ORF      STATUS       Function Best COG  Functional category                                          Pathways and functional systems
r_klactVI0982   suspect: LH   R     KOG0017  General function prediction only                               FOG: Transposon-encoded proteins with TYA, reverse transcriptase, integrase domains in various combinations

BLASTP 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= r_klactVI0982  337386  340502 1039 
         (1039 letters)

Database: KOG eukaryal database 04/03 
           60,738 sequences; 30,389,216 total letters

Searching..................................................done

Color Key for Alignment Scores:   


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

YNL054w [R] KOG0017 FOG: Transposon-encoded proteins with TYA re...   348   3e-95

>YNL054w [R] KOG0017 FOG: Transposon-encoded proteins with TYA reverse
            transcriptase integrase domains in various combinations
          Length = 1165

 Score =  348 bits (892), Expect = 3e-95
 Identities = 267/816 (32%), Positives = 382/816 (46%), Gaps = 130/816 (15%)

Query: 298  NNPTVQVQSASANLTPNGQISLPTVTDSESVRKLNKESSSKADFFAARLATAVGENEISD 357
            N     +++++A+L+ +   +     DS    + N E  +KADFFAARLATAVGENEISD
Sbjct: 388  NKTNADIKNSNADLSASTSNNNAINDDSH---ESNSEKPTKADFFAARLATAVGENEISD 444

Query: 358  SEETFVYQSTANSVKNASINDVSATPXXXXXXXXXXXXXXKSYGIPAKLSAPQLKQNDKL 417
            SEETFVY+S ANS KN    D S+                +++GI +K+SAP L  N KL
Sbjct: 445  SEETFVYESAANSTKNLIFPDSSSQQQQQQQQPPKQQQQQQNHGITSKISAPLLNNNKKL 504

Query: 418  LNRLKNTRHTSIAAIPN------SQGPPSSNSEQDDVASLRSINRNTMQEMQSIKS---H 468
            L+RLKN+RH S  AI N      S  P  +++   +  +L S   N + E+ SIK    H
Sbjct: 505  LSRLKNSRHISTGAILNNTIATISTNPNLNSNVMQNNNNLMS-GHNHLDELSSIKQEPPH 563

Query: 469  RTQMSASPKKRLSITSLXXXXXXXXXXXXXSVITNGAXXXXXXXXXXXXXFAFGQPKSGK 528
            + Q    P    S+ S               +  +                      S  
Sbjct: 564  QLQQQQPPMDVQSVDSYTSDNPDSNV-----IAKSPDKRSSLVSLSKVSPHLLSSTSSNG 618

Query: 529  TTSSIPK---NSKQHFPQPMLPLAQ---NKVMHQNHRRTSSKPGDSKKSALRTRSSKVFD 582
             T S P    NS++  P   +   +   N  +  +    +S  GD+K+  LRT  SK+FD
Sbjct: 619  NTISCPNVATNSQELEPNNDISTKKSLSNSTLRHSSANRNSNYGDNKRP-LRTTVSKIFD 677

Query: 583  --PNGSSLRRYSGVPDDVNLEDFVDQYDGEFDIKMHRPSRTTEKKXXXXXXXXXXXXXRG 640
              PNG+ LRRYSGVPD VNLED+++Q         +   + + KK               
Sbjct: 678  SNPNGAPLRRYSGVPDHVNLEDYIEQPHN------YPTMQNSVKKDEF------------ 719

Query: 641  TYSSDNHIQYEPNDNHSGYGDDEIDLDNNDIQSNSDISDIHGLTYHNQTNYDEHSYADED 700
             Y+S N+ ++    N   YGD+ +  + N    N D S+++   + N     +H +  ED
Sbjct: 720  -YNSRNN-KFPHGLNF--YGDNNVIEEEN----NGDSSNVNRPQHTNL----QHEFIPED 767

Query: 701  GD----DIESMFYYNGGSIVPNNARVG--RRFSELDDGTEDVESQGFFYGDPNNA-ERSN 753
             +    DI SMFYYN  + +     +       ++DD      +   +YG  +N  E   
Sbjct: 768  NESDENDIHSMFYYNHKNDLETKPLISDYGEDEDVDDYDRPNATFNSYYGSASNTHELPL 827

Query: 754  EGKGLGSSQLPYF-----------NQASEYTPLKNKRVSR-------------------- 782
             G+    S   Y+           NQ +EYTPL+ KR  R                    
Sbjct: 828  HGRMPSRSNNDYYDFMVGNNTGNNNQLNEYTPLRMKRGQRHLSRTNNSIMNGSIHMNGND 887

Query: 783  -------KRSDFYGDFSPHNFYTKKGSWSKFKNFVYFSFIVASLLTLGFISGFLLATNKE 835
                     +D  G +SPHNFY++K  + K KNF+Y +F+++SLL  GFI GFLLATNKE
Sbjct: 888  DVTHSNINNNDIVG-YSPHNFYSRKSPFVKVKNFLYLAFVISSLLMTGFILGFLLATNKE 946

Query: 836  LHDFQLLAMDNVLVSLDELVFDITATAFNPSLFTIGIKDVELDIFAKTKHVDVSSNED-- 893
            L D  ++ MDNV+ S DEL+FDIT +AFNP  F+I +  V+LDIFAK+ ++   SN D  
Sbjct: 947  LQDVDVVVMDNVISSSDELIFDITVSAFNPGFFSISVSQVDLDIFAKSSYLKCDSNGDCT 1006

Query: 894  ------------------------KLYSTPYQTILLGTVYNLESELQFRGRLINRNYDVS 929
                                     +     +T+LLGT   LE+ L+F+G   NRNYDVS
Sbjct: 1007 VMEQERKILQITTNLSLVEESANNDISGGNIETVLLGTAKKLETPLKFQGGAFNRNYDVS 1066

Query: 930  VASVKLLNPGAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXQDE-KGNHKLENDIDRWKEL 988
            V+SVKLL+PG+                             + +       E+D  +WK L
Sbjct: 1067 VSSVKLLSPGSREAKHENDDDDDDDGDDGDDENNTNERQYKSKPNARDDKEDDTKKWKLL 1126

Query: 989  IKYEFELIVRGNMYYSIPFFNNQKVLPVQQQISVDP 1024
            IK+++ELIVRG+M Y +PFFN QK   +Q+   V P
Sbjct: 1127 IKHDYELIVRGSMKYEVPFFNTQKSTAIQKDSMVHP 1162


  Database: KOG eukaryal database 04/03
    Posted date:  Apr 14, 2003  1:07 PM
  Number of letters in database: 30,389,216
  Number of sequences in database:  60,738
  
Lambda     K      H
   0.310    0.128    0.355 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,774,471
Number of Sequences: 60738
Number of extensions: 2347473
Number of successful extensions: 5864
Number of sequences better than 1.0e-05: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 5852
Number of HSP's gapped (non-prelim): 5
length of query: 1039
length of database: 30,389,216
effective HSP length: 117
effective length of query: 922
effective length of database: 23,282,870
effective search space: 21466806140
effective search space used: 21466806140
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)