ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactVI0999 good C KOG4075 Energy production and conversion Cytochrome c oxidase, subunit IV/COX5b
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactVI0999 346699 347208 170
(170 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YNL052w [C] KOG4075 Cytochrome c oxidase subunit IV/COX5b 209 1e-54
YIL111w [C] KOG4075 Cytochrome c oxidase subunit IV/COX5b 191 4e-49
SPCC338.10c [C] KOG4075 Cytochrome c oxidase subunit IV/COX5b 91 6e-19
>YNL052w [C] KOG4075 Cytochrome c oxidase subunit IV/COX5b
Length = 153
Score = 209 bits (532), Expect = 1e-54
Identities = 98/134 (73%), Positives = 113/134 (84%)
Query: 37 FAQTQALSKASIVDLPNRWEDLPATEQQDIVLKLAERQKLPWTELTNVEKQAAWYISYGA 96
FAQT ALS A+++DL +RWE++P+TEQQDIV KL+ERQKLPW +LT EKQA WYISYG
Sbjct: 20 FAQTHALSNAAVMDLQSRWENMPSTEQQDIVSKLSERQKLPWAQLTEPEKQAVWYISYGE 79
Query: 97 WGPRRPVHGKGDAAFIAKGVAAGLIASLLIFAGIRQLSGDPPKTMTKEWQLKSDEYLKSK 156
WGPRRPV KGD++FIAKGVAAGL+ S+ +FA +R G KTM KEWQLKSDEYLKSK
Sbjct: 80 WGPRRPVLNKGDSSFIAKGVAAGLLFSVGLFAVVRMAGGQDAKTMNKEWQLKSDEYLKSK 139
Query: 157 NANPWGGYSQVQSK 170
NANPWGGYSQVQSK
Sbjct: 140 NANPWGGYSQVQSK 153
>YIL111w [C] KOG4075 Cytochrome c oxidase subunit IV/COX5b
Length = 151
Score = 191 bits (485), Expect = 4e-49
Identities = 92/135 (68%), Positives = 105/135 (77%), Gaps = 1/135 (0%)
Query: 37 FAQTQALSKASIVDLPNRWEDLPATEQQDIVLKLAERQKLPWTELTNVEKQAAWYISYGA 96
F QT+ALSKA++ DLP RWE++P EQ++I L ERQKLPW L N E +AAWYISYG
Sbjct: 17 FVQTKALSKATLTDLPERWENMPNLEQKEIADNLTERQKLPWKTLNNEEIKAAWYISYGE 76
Query: 97 WGPRRPVHGKGDAAFIAKGVAAGLIASLLIFAGIRQLSG-DPPKTMTKEWQLKSDEYLKS 155
WGPRRPVHGKGD AFI KGV GL S +F +R L+ + PKTM +EWQLKSDEYLKS
Sbjct: 77 WGPRRPVHGKGDVAFITKGVFLGLGISFGLFGLVRLLANPETPKTMNREWQLKSDEYLKS 136
Query: 156 KNANPWGGYSQVQSK 170
KNANPWGGYSQVQSK
Sbjct: 137 KNANPWGGYSQVQSK 151
>SPCC338.10c [C] KOG4075 Cytochrome c oxidase subunit IV/COX5b
Length = 174
Score = 91.3 bits (225), Expect = 6e-19
Identities = 47/121 (38%), Positives = 69/121 (56%), Gaps = 2/121 (1%)
Query: 43 LSKASIVDLPNRWEDLPATEQQDIVLKLAERQKLPWTELTNVEKQAAWYISYGAWGPRRP 102
+++ +VDL RW + E+ ++ L RQK PWT L+ EK+AA++I++G GPR
Sbjct: 31 IARPRLVDLDKRWGIMSQEEKDGLITDLYARQKQPWTTLSIEEKKAAYWIAFGEHGPRAF 90
Query: 103 VHGKGDAAFIAKGVAAGLIASLLIFAGIRQLSGDPPKTMTKEWQLKSDEYLKSKNANPWG 162
H F G AGL +++F IR + P+TMT+EWQ KS+EY+K NP
Sbjct: 91 SHISQKTVF--WGTVAGLTIGVVLFGLIRTQAAPSPRTMTREWQEKSNEYMKENKINPIS 148
Query: 163 G 163
G
Sbjct: 149 G 149
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.318 0.133 0.410
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,910,784
Number of Sequences: 60738
Number of extensions: 312611
Number of successful extensions: 663
Number of sequences better than 1.0e-05: 3
Number of HSP's better than 0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 658
Number of HSP's gapped (non-prelim): 3
length of query: 170
length of database: 30,389,216
effective HSP length: 99
effective length of query: 71
effective length of database: 24,376,154
effective search space: 1730706934
effective search space used: 1730706934
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)