ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactVI1059 good U KOG3142 Intracellular trafficking, secretion, and vesicular transport Prenylated rab acceptor 1
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactVI1059 Highly similar to YNL044w SP|P53633 YIP3 protein
of unknown function singleton [INTRON]
(160 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YNL044w [U] KOG3142 Prenylated rab acceptor 1 221 3e-58
SPCC306.02c [U] KOG3142 Prenylated rab acceptor 1 122 3e-28
Hs5453960 [U] KOG3142 Prenylated rab acceptor 1 60 1e-09
7303822 [U] KOG3142 Prenylated rab acceptor 1 47 8e-06
At5g07110 [U] KOG3142 Prenylated rab acceptor 1 47 1e-05
At1g55190 [U] KOG3142 Prenylated rab acceptor 1 42 3e-04
At2g40380 [U] KOG3142 Prenylated rab acceptor 1 42 4e-04
At5g05380 [U] KOG3142 Prenylated rab acceptor 1 41 6e-04
At3g56110 [U] KOG3142 Prenylated rab acceptor 1 41 6e-04
At1g08770 [U] KOG3142 Prenylated rab acceptor 1 39 0.002
At1g55640 [U] KOG3142 Prenylated rab acceptor 1 39 0.004
At5g01640 [U] KOG3142 Prenylated rab acceptor 1 38 0.005
At2g38360 [U] KOG3142 Prenylated rab acceptor 1 37 0.009
At1g04260 [U] KOG3142 Prenylated rab acceptor 1 35 0.043
At3g13710 [U] KOG3142 Prenylated rab acceptor 1 35 0.056
At3g13720 [U] KOG3142 Prenylated rab acceptor 1 33 0.16
At1g17700 [U] KOG3142 Prenylated rab acceptor 1 32 0.28
At5g56230 [U] KOG3142 Prenylated rab acceptor 1 32 0.47
ECU02g1470 [U] KOG3142 Prenylated rab acceptor 1 30 1.4
7299846 [S] KOG4608 Uncharacterized conserved protein 28 4.0
>YNL044w [U] KOG3142 Prenylated rab acceptor 1
Length = 176
Score = 221 bits (563), Expect = 3e-58
Identities = 112/159 (70%), Positives = 127/159 (79%)
Query: 2 SVERIKSEFGSLQNRLASVRPPQEFFDFKRISKPQNFGEVQSRVGYNLGYFSTNYVLIIS 61
S+E IKSEF SLQ++LA++R PQEFF+FK+ISKPQNFGEVQSRV YNL YFS+NY LII
Sbjct: 18 SMENIKSEFQSLQSKLATLRTPQEFFNFKKISKPQNFGEVQSRVAYNLKYFSSNYGLIIG 77
Query: 62 ALSIYXXXXXXXXXXXXXXXXXXXMGINKLNGADLVTPFGSFKTSQLYTGLLCVAVPLGF 121
LSIY +GINKL G +LVTPFGSFKT+QLYTGL+CVAVP+GF
Sbjct: 78 CLSIYTLLTNLLLLFVIVLVVAGIVGINKLKGEELVTPFGSFKTNQLYTGLVCVAVPIGF 137
Query: 122 LASPISTLLWLIGASIVTVFSHASFMEKPIETVFEEETV 160
LASPISTLLWLIGAS V+VF HAS MEKPIETVF+EETV
Sbjct: 138 LASPISTLLWLIGASAVSVFGHASLMEKPIETVFDEETV 176
>SPCC306.02c [U] KOG3142 Prenylated rab acceptor 1
Length = 171
Score = 122 bits (305), Expect = 3e-28
Identities = 63/153 (41%), Positives = 81/153 (52%)
Query: 4 ERIKSEFGSLQNRLASVRPPQEFFDFKRISKPQNFGEVQSRVGYNLGYFSTNYVLIISAL 63
E + S L+ + EF D +RIS+P+NF E QSR+ +N FS+NY+ II+ L
Sbjct: 13 ETFSEIYASRAQYLSGFKSVGEFLDVRRISRPRNFSEAQSRISFNFSRFSSNYLAIIAML 72
Query: 64 SIYXXXXXXXXXXXXXXXXXXXMGINKLNGADLVTPFGSFKTSQLYTGLLCVAVPLGFLA 123
IY GI KL GADL LY L CV +PLG A
Sbjct: 73 VIYALIRNPLLLIVIGIGVGGVYGIRKLQGADLQLSHRVISNQNLYVILACVLIPLGLFA 132
Query: 124 SPISTLLWLIGASIVTVFSHASFMEKPIETVFE 156
SPI T++WL+GAS V VF HA+F E P+E+ FE
Sbjct: 133 SPIETIIWLVGASCVCVFGHAAFFEPPVESAFE 165
>Hs5453960 [U] KOG3142 Prenylated rab acceptor 1
Length = 185
Score = 60.1 bits (144), Expect = 1e-09
Identities = 41/147 (27%), Positives = 67/147 (44%), Gaps = 3/147 (2%)
Query: 13 LQNRLASVRPPQEFFDFKRISKPQNFGEVQSRVGYNLGYFSTNYVLIISALSIYXXXXXX 72
L+ R A++RP F D +R S+P+N GE+ R+ N+ Y+ +NYV + L +Y
Sbjct: 35 LERRRATIRPWSTFVDQQRFSRPRNLGELCQRLVRNVEYYQSNYVFVFLGLILYCVVTSP 94
Query: 73 XXXXXXXXXXXXXMGINKLNGADLVTPFG-SFKTSQLYTGLLCVAVPLGFLASPISTLLW 131
+ + FG Y ++ P +LA S + W
Sbjct: 95 MLLVALAVFFGACYILYLRTLESKLVLFGREVSPEHQYALAGGISFPFFWLAGAGSAVFW 154
Query: 132 LIGASIVTVFSHASFMEKPIETVFEEE 158
++GA++V + SHA+F + IE V EE
Sbjct: 155 VLGATLVVIGSHAAFHQ--IEAVDGEE 179
>7303822 [U] KOG3142 Prenylated rab acceptor 1
Length = 193
Score = 47.4 bits (111), Expect = 8e-06
Identities = 42/159 (26%), Positives = 58/159 (36%), Gaps = 7/159 (4%)
Query: 2 SVERIKSEFGSLQNRLASVRPPQEFFDFKRISKPQNFGEVQSRVGYNLGYFSTNYVLIIS 61
S+ + S Q S+RP FF+ + + SRV NL YF NYV I
Sbjct: 31 SLSNLPSPLQIFQMVRNSLRPWVVFFNINNFKTAISMQRLNSRVIRNLSYFQANYVFIFF 90
Query: 62 ALSIYXXXXXXXXXXXXXXXXXXXMGINKL--NGADLVTPFGSFKTSQLYTGLLCVAVPL 119
L IY G +KL +++ SQ L P+
Sbjct: 91 VLMIY---CLITAPCILLVILASAFGCHKLRVRNSNITIVGQQLTPSQQIIALNLATAPV 147
Query: 120 GFLASPISTLLWLIGASIVTVFSHASFMEKPIETVFEEE 158
FL + L W +GAS + HA F I+ + EE
Sbjct: 148 LFLVGAGAVLFWTLGASCFVIAMHAIFYN--IDAIVTEE 184
>At5g07110 [U] KOG3142 Prenylated rab acceptor 1
Length = 216
Score = 46.6 bits (109), Expect = 1e-05
Identities = 39/149 (26%), Positives = 62/149 (41%), Gaps = 4/149 (2%)
Query: 12 SLQNRLASVRPPQEFFDFKRISKPQNFGEVQSRVGYNLGYFSTNYVLIISALSIYXXXXX 71
++++ A RP E D S+P + E SRV N YF NY+ +++ L
Sbjct: 36 TVRHASADARPWAELVDRSAFSRPPSLSEATSRVRKNFSYFRANYITLVAILLAASLLTH 95
Query: 72 XXXXXXXXXXXXXXMGINKLNGADLVTPFGSFKTSQLYT-GLLCVA-VPLGFLASPISTL 129
+ + AD G S L T G+LC++ V + F+ S S L
Sbjct: 96 PFALFLLASLAASWLFLYFFRPADQPLVIGGRTFSDLETLGILCLSTVVVMFMTSVGSLL 155
Query: 130 LWLIGASIVTVFSHASFMEKPIETVFEEE 158
+ + I+ V H +F + E +F EE
Sbjct: 156 MSTLAVGIMGVAIHGAF--RAPEDLFLEE 182
>At1g55190 [U] KOG3142 Prenylated rab acceptor 1
Length = 189
Score = 42.4 bits (98), Expect = 3e-04
Identities = 25/68 (36%), Positives = 38/68 (55%), Gaps = 3/68 (4%)
Query: 1 MSVERIKSEFGSLQNRLASVRPPQEFFDFKRISKPQNFGEVQSRVGYNLGYFSTNY---V 57
+ +E I +++ LA+ RP + FDF+ ++ P F + SR+ NLGYF NY V
Sbjct: 17 IDLEYISRAKHRIKSGLATRRPWKSMFDFESMTLPHGFFDAISRIKTNLGYFRANYAIGV 76
Query: 58 LIISALSI 65
L I LS+
Sbjct: 77 LFILFLSL 84
>At2g40380 [U] KOG3142 Prenylated rab acceptor 1
Length = 213
Score = 42.0 bits (97), Expect = 4e-04
Identities = 34/137 (24%), Positives = 53/137 (37%), Gaps = 2/137 (1%)
Query: 12 SLQNRLASVRPPQEFFDFKRISKPQNFGEVQSRVGYNLGYFSTNYVLIISALSIYXXXXX 71
SL+ L+ RP E D ++P + + SR+ NL YF NY I+S + +
Sbjct: 38 SLRESLSQRRPWLELVDRSSFARPDSLTDSFSRIRKNLAYFKVNYSAIVSLVLAFSLLSH 97
Query: 72 XXXXXXXXXXXXXXMGINKLNGAD--LVTPFGSFKTSQLYTGLLCVAVPLGFLASPISTL 129
M + +D LV SF + GL+ + + F+ S S L
Sbjct: 98 PFSLLVLLSLLGSWMFLYLFRSSDQPLVLFGRSFSDRETLLGLVLTTIVVVFMTSVGSLL 157
Query: 130 LWLIGASIVTVFSHASF 146
+ I V H +F
Sbjct: 158 TSALTIGIAIVCLHGAF 174
>At5g05380 [U] KOG3142 Prenylated rab acceptor 1
Length = 217
Score = 41.2 bits (95), Expect = 6e-04
Identities = 20/50 (40%), Positives = 29/50 (58%)
Query: 12 SLQNRLASVRPPQEFFDFKRISKPQNFGEVQSRVGYNLGYFSTNYVLIIS 61
S++ L+ RP E D IS+P++ + SR+ NL YF NYV I+S
Sbjct: 39 SIRQSLSQRRPWLELVDRSAISRPESLTDAYSRIRRNLPYFKVNYVTIVS 88
>At3g56110 [U] KOG3142 Prenylated rab acceptor 1
Length = 209
Score = 41.2 bits (95), Expect = 6e-04
Identities = 34/140 (24%), Positives = 61/140 (43%), Gaps = 6/140 (4%)
Query: 12 SLQNRLASVRPPQEFFDFKRISKPQNFGEVQSRVGYNLGYFSTNYVLIISALSIYXXXXX 71
S+++ L+ RP E D +++P++ + SR+ NL YF NYV I+S + +
Sbjct: 36 SIRDGLSQRRPWTELIDRSSMARPESLTDALSRIRKNLAYFKVNYVAIVSLVLAFSLFSH 95
Query: 72 XXXXXXXXXXXXXXMGINKLNGAD--LVTPFGSFKTSQLYTGLLCVAVPLGFLAS--PIS 127
M + +D LV +F + L+ + + F+ S +
Sbjct: 96 PLSLLVLIGLLGGWMFLYLFRPSDQPLVVFGRTFSDRETLLALVLSTIVVVFMTSVGSLL 155
Query: 128 TLLWLIGASIVTVFSHASFM 147
T +IG +IV V H +F+
Sbjct: 156 TSALMIGVAIVCV--HGAFV 173
>At1g08770 [U] KOG3142 Prenylated rab acceptor 1
Length = 209
Score = 39.3 bits (90), Expect = 0.002
Identities = 15/50 (30%), Positives = 29/50 (58%)
Query: 14 QNRLASVRPPQEFFDFKRISKPQNFGEVQSRVGYNLGYFSTNYVLIISAL 63
Q+ + ++RP +E D +S P+ + E + + +N+ YF NY L + A+
Sbjct: 41 QSMITTLRPWREILDLSALSLPRGYDEAMAHLKHNISYFRGNYALAVLAI 90
>At1g55640 [U] KOG3142 Prenylated rab acceptor 1
Length = 187
Score = 38.5 bits (88), Expect = 0.004
Identities = 24/55 (43%), Positives = 32/55 (57%), Gaps = 4/55 (7%)
Query: 12 SLQNRLASV---RPP-QEFFDFKRISKPQNFGEVQSRVGYNLGYFSTNYVLIISA 62
S+ N +ASV RP EF F I +P +F SRV NL +F+ NYVL+ +A
Sbjct: 26 SVHNLIASVSSYRPWWSEFLAFGSIDRPSSFSPAVSRVKLNLHHFAVNYVLLTAA 80
>At5g01640 [U] KOG3142 Prenylated rab acceptor 1
Length = 223
Score = 38.1 bits (87), Expect = 0.005
Identities = 30/132 (22%), Positives = 50/132 (37%), Gaps = 2/132 (1%)
Query: 17 LASVRPPQEFFDFKRISKPQNFGEVQSRVGYNLGYFSTNYVLIISALSIYXXXXXXXXXX 76
L+ RP E D +KP + E +R N YF NYV I++ + +
Sbjct: 51 LSRSRPWSELLDRSAFTKPDSLSEAGTRFRKNSSYFRVNYVCIVALILGFSLLAHPFSLI 110
Query: 77 XXXXXXXXXMGINKLNGAD--LVTPFGSFKTSQLYTGLLCVAVPLGFLASPISTLLWLIG 134
+ + +D L+ SF + GL+ + + F S S L+ +
Sbjct: 111 LLLCLAASWLFLYLFRPSDRPLILFGRSFSEYETLGGLILSTIAVIFFTSVGSVLISALM 170
Query: 135 ASIVTVFSHASF 146
I T+ H +F
Sbjct: 171 IGIATICVHGAF 182
>At2g38360 [U] KOG3142 Prenylated rab acceptor 1
Length = 220
Score = 37.4 bits (85), Expect = 0.009
Identities = 16/52 (30%), Positives = 29/52 (55%)
Query: 12 SLQNRLASVRPPQEFFDFKRISKPQNFGEVQSRVGYNLGYFSTNYVLIISAL 63
+++N L+ RP E D +SKP++ + R+ N YF NY+ + +A+
Sbjct: 46 TVKNGLSKRRPWAELADRSALSKPESISDAAVRIRKNYSYFKVNYLTVATAI 97
>At1g04260 [U] KOG3142 Prenylated rab acceptor 1
Length = 182
Score = 35.0 bits (79), Expect = 0.043
Identities = 17/50 (34%), Positives = 26/50 (52%)
Query: 14 QNRLASVRPPQEFFDFKRISKPQNFGEVQSRVGYNLGYFSTNYVLIISAL 63
Q+ + RP +F D S P + + +RV NL +F NY +I+S L
Sbjct: 14 QSITGAARPWGDFLDLSAFSFPSSIADATTRVTQNLTHFRINYSIILSIL 63
>At3g13710 [U] KOG3142 Prenylated rab acceptor 1
Length = 188
Score = 34.7 bits (78), Expect = 0.056
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Query: 2 SVERIKSEFGSLQNRLASVRPPQEFFDFKRISKPQNFGEVQSRVGYNLGYFSTNYVLII 60
S+ R K +++ LA+ R + FD P +V SR+ NL YF +NY ++I
Sbjct: 21 SISRAKQR---IKDGLATRRSWRVMFDLHSTGLPHGVSDVFSRIKTNLAYFRSNYAIVI 76
>At3g13720 [U] KOG3142 Prenylated rab acceptor 1
Length = 188
Score = 33.1 bits (74), Expect = 0.16
Identities = 16/60 (26%), Positives = 29/60 (47%)
Query: 1 MSVERIKSEFGSLQNRLASVRPPQEFFDFKRISKPQNFGEVQSRVGYNLGYFSTNYVLII 60
+ VE + ++ LA+ R + FDF + P + +R+ NL YF NY +++
Sbjct: 17 VDVESLSRAKHRIKAGLATRRAWRVMFDFHSMGLPHGVSDAFTRIKTNLAYFRMNYAIVV 76
>At1g17700 [U] KOG3142 Prenylated rab acceptor 1
Length = 180
Score = 32.3 bits (72), Expect = 0.28
Identities = 14/44 (31%), Positives = 24/44 (53%)
Query: 17 LASVRPPQEFFDFKRISKPQNFGEVQSRVGYNLGYFSTNYVLII 60
LA+ RP ++ D + P+ V +R+ N YF TNY +++
Sbjct: 33 LATRRPWKQMLDLGSFNFPRKLATVITRIRANTVYFQTNYTIVV 76
>At5g56230 [U] KOG3142 Prenylated rab acceptor 1
Length = 186
Score = 31.6 bits (70), Expect = 0.47
Identities = 16/55 (29%), Positives = 26/55 (47%)
Query: 12 SLQNRLASVRPPQEFFDFKRISKPQNFGEVQSRVGYNLGYFSTNYVLIISALSIY 66
+L ++S RP E S P++F + R N YF NY +I+S + +
Sbjct: 27 NLTTAISSHRPWSELIFSGDFSLPESFSSLLLRSKTNFNYFFVNYTIIVSTCAAF 81
>ECU02g1470 [U] KOG3142 Prenylated rab acceptor 1
Length = 156
Score = 30.0 bits (66), Expect = 1.4
Identities = 13/42 (30%), Positives = 24/42 (56%)
Query: 24 QEFFDFKRISKPQNFGEVQSRVGYNLGYFSTNYVLIISALSI 65
++FF+ RI PQN + + RV NL F +Y+ + + ++
Sbjct: 26 RDFFNIGRICVPQNLNDAKRRVFANLDRFKFHYLAMTAIFTL 67
>7299846 [S] KOG4608 Uncharacterized conserved protein
Length = 261
Score = 28.5 bits (62), Expect = 4.0
Identities = 15/43 (34%), Positives = 26/43 (59%), Gaps = 3/43 (6%)
Query: 27 FDFKRISKPQ---NFGEVQSRVGYNLGYFSTNYVLIISALSIY 66
FD K+ + Q NF + + G+ +G F+T+Y II+ +S+Y
Sbjct: 110 FDAKKKLQDQFTVNFAKGGFKWGWRVGLFTTSYFGIITCMSVY 152
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.322 0.138 0.395
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,873,912
Number of Sequences: 60738
Number of extensions: 253317
Number of successful extensions: 550
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 526
Number of HSP's gapped (non-prelim): 21
length of query: 160
length of database: 30,389,216
effective HSP length: 98
effective length of query: 62
effective length of database: 24,436,892
effective search space: 1515087304
effective search space used: 1515087304
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)