ORF      STATUS       Function Best COG  Functional category                                          Pathways and functional systems
r_klactVI1149   suspect: LH   R     KOG0017  General function prediction only                               FOG: Transposon-encoded proteins with TYA, reverse transcriptase, integrase domains in various combinations

BLASTP 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= r_klactVI1149 400673  402976 768  
         (768 letters)

Database: KOG eukaryal database 04/03 
           60,738 sequences; 30,389,216 total letters

Searching..................................................done

Color Key for Alignment Scores:   


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

YDR034c [R] KOG0017 FOG: Transposon-encoded proteins with TYA re...   806   0.0  

>YDR034c [R] KOG0017 FOG: Transposon-encoded proteins with TYA reverse
           transcriptase integrase domains in various combinations
          Length = 790

 Score =  806 bits (2082), Expect = 0.0
 Identities = 408/674 (60%), Positives = 503/674 (74%), Gaps = 30/674 (4%)

Query: 120 SMSPASGISSVDASGATPST--DADGKIVKRKYSRNGCLECKKRRMKCDEGKPTCWQCAR 177
           S +  +G SS+  + A  ST  D  G  VKRKYSRNGC ECK+RRMKCDE KPTCWQCAR
Sbjct: 122 SQADDNGHSSLTPNPAVTSTVTDKKGNTVKRKYSRNGCSECKRRRMKCDETKPTCWQCAR 181

Query: 178 LNRKCVYILXXXXXXXXXXXXXSAGAC---ATCTEDGDEKGKVKNDATMKSETNFSLNSH 234
           LNR+CVY+L                     +T  ++     + +  ++ K+E    +  +
Sbjct: 182 LNRQCVYVLNPKNKKRRTSNAQRVKEFRKHSTSLDNDHNNARKRQHSSCKAEKKKKVRQN 241

Query: 235 VN------------------DSLVNSGLPNLIPAGSINAMDANLLIQNLNDIVSMKLNDS 276
           ++                  D + +  +PNL    ++N  D NLL+QNLND+V+MKL+DS
Sbjct: 242 LSEDTTDPKPITDNGKNVPLDEIESLEIPNLDLTTTMNGYDVNLLMQNLNDMVNMKLHDS 301

Query: 277 -LVSDELKDLEFNDLDLPDLNFPMLNTASEFSSVPISFLVDNTITFNTSLESFKLGGLHD 335
            L+++ELK L+  DLD+P+L    L  ++  SSVPISFLV+N ITFNT L SFKLGG+HD
Sbjct: 302 YLLNEELKGLDLPDLDIPEL----LPASNVNSSVPISFLVNNVITFNTKLSSFKLGGIHD 357

Query: 336 KYLRTFYHDCLDSITPFFQDQNNPLRDILLSFGRNEPYLLSAILAVGASIVHRKSNKMED 395
           KYL+ FY+DCLDSI PFFQ+Q NPLRDILLSF +NE YLLS+ILA GASI +RKSN +ED
Sbjct: 358 KYLKIFYYDCLDSIAPFFQNQGNPLRDILLSFAKNEAYLLSSILATGASIAYRKSNNLED 417

Query: 396 EKAYCGYLSHCLQLLGDQFKNETNVINKLEPIILTVILLTWDCIYTMNSQWRSHLKGITE 455
           E+ YC YLSHCL LLG+QFKNE+NV+N++EPIILTVI+L WDCIY+MNSQWRSHLKG+T+
Sbjct: 418 ERNYCAYLSHCLSLLGEQFKNESNVLNRIEPIILTVIMLAWDCIYSMNSQWRSHLKGVTD 477

Query: 456 LFKKINSGNSSKVLNVAKCWFKVMETFASISTVLGGALVEETDLDAIFDPYDFQYVESLK 515
           LFKKIN+GNSSKVLNVAKCWFKVMETFASISTV GG+L++  DLDAIFDPYD+QYV+SLK
Sbjct: 478 LFKKINAGNSSKVLNVAKCWFKVMETFASISTVFGGSLIDNNDLDAIFDPYDYQYVDSLK 537

Query: 516 SLNITTSLNEFNLLRGHNEEFDLVIKEVFKSLNLIRSLEKTSMDGNKGGMINKNIDYLLF 575
            LNI T LNEFNLLRGH E+FDLVIKEVFKSLN IRS EK      + G+  K +DYLL 
Sbjct: 538 FLNIMTPLNEFNLLRGHKEDFDLVIKEVFKSLNTIRSTEKNYF-SKEEGLFTKKLDYLLL 596

Query: 576 -FDSHSEAYMNKLSYFKIQKIIVEIDKQLEYQFIDKSGVIPADNQSHPSNSKILDHAIDL 634
              + SE   +++SYF  QKI+VEIDKQL+Y+FIDKSG+IP+DNQSHP  S I D+AID+
Sbjct: 597 SSQTSSEKSKDQISYFNTQKILVEIDKQLDYEFIDKSGIIPSDNQSHPRISNIHDNAIDM 656

Query: 635 VTLKNGDVIAISWYDISHQTQVXXXXXXXXXXXXGIPKESIAVQQVVKRIMSLFRFLDSD 694
           VTLKNG+ +AISWYDISHQTQV            G+PKES  +QQVVK+IMS F+FLDSD
Sbjct: 657 VTLKNGEEVAISWYDISHQTQVLSFLLIVLLKLLGMPKESSTIQQVVKKIMSFFKFLDSD 716

Query: 695 QPPVNLRTCYSNFAVLIAGLNAIEEETKYLVRKYYEVNGSRFRRLTEHNLNRLEKVWSGN 754
            PP N RTCYSNFAVLIAGLNA++EET+ +V++YY++NG +F++LTEHNLNRLEKVW G 
Sbjct: 717 SPPQNSRTCYSNFAVLIAGLNAMDEETRAIVKRYYKINGGKFQKLTEHNLNRLEKVWYGK 776

Query: 755 AGKFNLEDQDVLTW 768
              + LE+QDVLTW
Sbjct: 777 NQNYRLEEQDVLTW 790


  Database: KOG eukaryal database 04/03
    Posted date:  Apr 14, 2003  1:07 PM
  Number of letters in database: 30,389,216
  Number of sequences in database:  60,738
  
Lambda     K      H
   0.317    0.134    0.387 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,498,302
Number of Sequences: 60738
Number of extensions: 2005283
Number of successful extensions: 6756
Number of sequences better than 1.0e-05: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 6750
Number of HSP's gapped (non-prelim): 2
length of query: 768
length of database: 30,389,216
effective HSP length: 114
effective length of query: 654
effective length of database: 23,465,084
effective search space: 15346164936
effective search space used: 15346164936
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)