ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactVI1308 good J KOG3204 Translation, ribosomal structure and biogenesis 60S ribosomal protein L13a
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactVI1308 Highly similar to YIL133c SP|P26784 RP22 60S
large subunit ribosomal protein {P2.174.f2.1} [INTRON]
(192 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YIL133c [J] KOG3204 60S ribosomal protein L13a 310 1e-84
YNL069c [J] KOG3204 60S ribosomal protein L13a 305 2e-83
SPBC839.13c [J] KOG3204 60S ribosomal protein L13a 247 8e-66
SPAC23A1.11 [J] KOG3204 60S ribosomal protein L13a 246 1e-65
SPBC2G2.05 [J] KOG3204 60S ribosomal protein L13a 238 3e-63
Hs6912634 [J] KOG3204 60S ribosomal protein L13a 219 1e-57
7296708 [J] KOG3204 60S ribosomal protein L13a 211 4e-55
Hs22052436 [J] KOG3204 60S ribosomal protein L13a 209 2e-54
At4g13170 [J] KOG3204 60S ribosomal protein L13a 194 5e-50
At3g24830 [J] KOG3204 60S ribosomal protein L13a 191 4e-49
At3g07110 [J] KOG3204 60S ribosomal protein L13a 188 4e-48
At5g48760 [J] KOG3204 60S ribosomal protein L13a 187 6e-48
CE01030 [J] KOG3204 60S ribosomal protein L13a 180 9e-46
Hs17476849 [J] KOG3204 60S ribosomal protein L13a 161 6e-40
ECU04g1380 [J] KOG3204 60S ribosomal protein L13a 107 1e-23
Hs22047599 [J] KOG3204 60S ribosomal protein L13a 103 1e-22
Hs20546806 [J] KOG3204 60S ribosomal protein L13a 97 1e-20
Hs22050223 [J] KOG3204 60S ribosomal protein L13a 89 5e-18
Hs18593018 [J] KOG3204 60S ribosomal protein L13a 89 5e-18
Hs17474185 [J] KOG3204 60S ribosomal protein L13a 85 7e-17
Hs22049410_2 [J] KOG3204 60S ribosomal protein L13a 69 4e-12
Hs22050721 [J] KOG3204 60S ribosomal protein L13a 59 4e-09
At1g78630 [J] KOG3203 Mitochondrial/chloroplast ribosomal protei... 50 1e-06
Hs18578388 [J] KOG3204 60S ribosomal protein L13a 49 6e-06
Hs20552096_3 [J] KOG3204 60S ribosomal protein L13a 44 2e-04
YOR150w [J] KOG3203 Mitochondrial/chloroplast ribosomal protein L13 41 0.001
CE17862 [B] KOG1245 Chromatin remodeling complex WSTF-ISWI large... 29 3.5
Hs5902044 [O] KOG0314 Predicted E3 ubiquitin ligase 29 4.5
Hs22068920 [O] KOG0314 Predicted E3 ubiquitin ligase 29 4.5
7300754 [I] KOG1890 Phosphoinositide phosphatase SAC1 28 7.7
>YIL133c [J] KOG3204 60S ribosomal protein L13a
Length = 199
Score = 310 bits (793), Expect = 1e-84
Identities = 156/189 (82%), Positives = 166/189 (87%), Gaps = 1/189 (0%)
Query: 5 GKGHLLGRLASTVAKQLLNGQKIVVVRAEALNISGEFFRNKLKYHDYLRKATAFNKTRGP 64
GKGHL+GRLAS VAKQLLNGQKIVVVRAE LNISGEFFRNKLKYHD+LRKATAFNKTRGP
Sbjct: 11 GKGHLVGRLASVVAKQLLNGQKIVVVRAEELNISGEFFRNKLKYHDFLRKATAFNKTRGP 70
Query: 65 FHFRAPSRIFYKAVRGMISHKTARGKAALERLKVFEGVPPPYDKKKRVVVPQALRVLRLK 124
FHFRAPSRIFYKA+RGM+SHKTARGKAALERLKVFEG+PPPYDKKKRVVVPQALRVLRLK
Sbjct: 71 FHFRAPSRIFYKALRGMVSHKTARGKAALERLKVFEGIPPPYDKKKRVVVPQALRVLRLK 130
Query: 125 PGRKYTTLGKLSTSVGWKYEDVVAKLEEKRKARSAEYYLXXXXXXXXXXXXXXTVG-TEV 183
PGRKYTTLGKLSTSVGWKYEDVVAKLE KRK SAEYY T ++V
Sbjct: 131 PGRKYTTLGKLSTSVGWKYEDVVAKLEAKRKVSSAEYYAKKRAFTKKVASANATAAESDV 190
Query: 184 SEKLAALGY 192
+++LAALGY
Sbjct: 191 AKQLAALGY 199
>YNL069c [J] KOG3204 60S ribosomal protein L13a
Length = 198
Score = 305 bits (782), Expect = 2e-83
Identities = 151/188 (80%), Positives = 165/188 (87%), Gaps = 1/188 (0%)
Query: 6 KGHLLGRLASTVAKQLLNGQKIVVVRAEALNISGEFFRNKLKYHDYLRKATAFNKTRGPF 65
K HLLGRLAST+AKQ+LNGQKIVVVRAEALNISGEFFRNKLKYHD+LRKATAFNKTRGPF
Sbjct: 11 KDHLLGRLASTIAKQVLNGQKIVVVRAEALNISGEFFRNKLKYHDFLRKATAFNKTRGPF 70
Query: 66 HFRAPSRIFYKAVRGMISHKTARGKAALERLKVFEGVPPPYDKKKRVVVPQALRVLRLKP 125
HFRAPSRI YKA+RGM+SHKTARGKAALERLK+FEG+PPPYDKKKRVVVPQALRVLRLKP
Sbjct: 71 HFRAPSRILYKAIRGMVSHKTARGKAALERLKIFEGIPPPYDKKKRVVVPQALRVLRLKP 130
Query: 126 GRKYTTLGKLSTSVGWKYEDVVAKLEEKRKARSAEYYLXXXXXXXXXXXXXXTVG-TEVS 184
GRKYTTLGKLSTSVGWKYEDVVAKLE+KRK RSAEYY ++V+
Sbjct: 131 GRKYTTLGKLSTSVGWKYEDVVAKLEDKRKVRSAEYYAKKRAFTKKVSSASAAASESDVA 190
Query: 185 EKLAALGY 192
++LA+ GY
Sbjct: 191 KQLASFGY 198
>SPBC839.13c [J] KOG3204 60S ribosomal protein L13a
Length = 197
Score = 247 bits (630), Expect = 8e-66
Identities = 124/187 (66%), Positives = 144/187 (76%), Gaps = 2/187 (1%)
Query: 6 KGHLLGRLASTVAKQLLNGQKIVVVRAEALNISGEFFRNKLKYHDYLRKATAFNKTRGPF 65
KGHLLGRLAS VAKQLL GQK+VVVR E LNISG FFRNKLKY YLRKA +N +RG F
Sbjct: 13 KGHLLGRLASVVAKQLLGGQKVVVVRCEELNISGHFFRNKLKYLAYLRKACRYNPSRGAF 72
Query: 66 HFRAPSRIFYKAVRGMISHKTARGKAALERLKVFEGVPPPYDKKKRVVVPQALRVLRLKP 125
HFRAPSRIF KAVRGM+ HKTARG+AALE L+ EG+PPP+DK+KRVVVP ALRVLRLKP
Sbjct: 73 HFRAPSRIFQKAVRGMLPHKTARGQAALEHLQAVEGIPPPFDKQKRVVVPAALRVLRLKP 132
Query: 126 GRKYTTLGKLSTSVGWKYEDVVAKLEEKRKARSAEYYLXXXXXXXXXXXXXXTVGTEVSE 185
GRKY T+G+LS+ VGWKY D+VAKLEE+RK +SA +Y + V++
Sbjct: 133 GRKYCTVGRLSSEVGWKYNDIVAKLEERRKVKSAAFY--QAKLAKQKKIASAKEASPVNQ 190
Query: 186 KLAALGY 192
KL+ GY
Sbjct: 191 KLSQFGY 197
>SPAC23A1.11 [J] KOG3204 60S ribosomal protein L13a
Length = 197
Score = 246 bits (629), Expect = 1e-65
Identities = 124/187 (66%), Positives = 143/187 (76%), Gaps = 2/187 (1%)
Query: 6 KGHLLGRLASTVAKQLLNGQKIVVVRAEALNISGEFFRNKLKYHDYLRKATAFNKTRGPF 65
KGHLLGRLAS VAKQLL GQK+VVVR E LNISG FFRNKLKY YLRKA +N +RG F
Sbjct: 13 KGHLLGRLASVVAKQLLGGQKVVVVRCEELNISGHFFRNKLKYLAYLRKACRYNPSRGAF 72
Query: 66 HFRAPSRIFYKAVRGMISHKTARGKAALERLKVFEGVPPPYDKKKRVVVPQALRVLRLKP 125
HFRAPSRIF KAVRGM+ HKTARG+AALE L+ EG+PPP+DK+KRVVVP ALRVLRLKP
Sbjct: 73 HFRAPSRIFQKAVRGMLPHKTARGQAALEHLQAVEGIPPPFDKQKRVVVPAALRVLRLKP 132
Query: 126 GRKYTTLGKLSTSVGWKYEDVVAKLEEKRKARSAEYYLXXXXXXXXXXXXXXTVGTEVSE 185
GRKY T+G+LS+ VGWKY D+V+KLEE+RK +SA +Y + V+
Sbjct: 133 GRKYCTVGRLSSEVGWKYSDIVSKLEERRKVKSAAFY--QAKLAKQKKIASAKAASSVNG 190
Query: 186 KLAALGY 192
KLA GY
Sbjct: 191 KLAEFGY 197
>SPBC2G2.05 [J] KOG3204 60S ribosomal protein L13a
Length = 197
Score = 238 bits (608), Expect = 3e-63
Identities = 119/187 (63%), Positives = 142/187 (75%), Gaps = 2/187 (1%)
Query: 6 KGHLLGRLASTVAKQLLNGQKIVVVRAEALNISGEFFRNKLKYHDYLRKATAFNKTRGPF 65
KGHL+GRLASTVAKQLL GQK+VVVR E LNISG FFRNKLKY YLRKA +N +RG F
Sbjct: 13 KGHLMGRLASTVAKQLLAGQKVVVVRCEELNISGHFFRNKLKYLAYLRKACRYNPSRGAF 72
Query: 66 HFRAPSRIFYKAVRGMISHKTARGKAALERLKVFEGVPPPYDKKKRVVVPQALRVLRLKP 125
HFRAPSRIF KAVRGM+ HKT RG AL+ L+ EG+PPP+DK+KR+VVP ALRVLRLKP
Sbjct: 73 HFRAPSRIFTKAVRGMLPHKTTRGNIALKNLQALEGIPPPFDKQKRLVVPAALRVLRLKP 132
Query: 126 GRKYTTLGKLSTSVGWKYEDVVAKLEEKRKARSAEYYLXXXXXXXXXXXXXXTVGTEVSE 185
RKY T+G+LS+ VGWKY+++V+KLEE+RK +SA +Y + V+E
Sbjct: 133 SRKYCTIGRLSSEVGWKYKNIVSKLEERRKIKSAAFY--QAKSANQKHINVAKTKSSVNE 190
Query: 186 KLAALGY 192
KLA GY
Sbjct: 191 KLAVFGY 197
>Hs6912634 [J] KOG3204 60S ribosomal protein L13a
Length = 203
Score = 219 bits (559), Expect = 1e-57
Identities = 104/158 (65%), Positives = 131/158 (82%)
Query: 5 GKGHLLGRLASTVAKQLLNGQKIVVVRAEALNISGEFFRNKLKYHDYLRKATAFNKTRGP 64
G+GHLLGRLA+ VAKQ+L G+K+VVVR E +NISG F+RNKLKY +LRK N +RGP
Sbjct: 11 GRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNPSRGP 70
Query: 65 FHFRAPSRIFYKAVRGMISHKTARGKAALERLKVFEGVPPPYDKKKRVVVPQALRVLRLK 124
+HFRAPSRIF++ VRGM+ HKT RG+AAL+RLKVF+G+PPPYDKKKR+VVP AL+V+RLK
Sbjct: 71 YHFRAPSRIFWRTVRGMLPHKTKRGQAALDRLKVFDGIPPPYDKKKRMVVPAALKVVRLK 130
Query: 125 PGRKYTTLGKLSTSVGWKYEDVVAKLEEKRKARSAEYY 162
P RK+ LG+L+ VGWKY+ V A LEEKRK ++ +Y
Sbjct: 131 PTRKFAYLGRLAHEVGWKYQAVTATLEEKRKEKAKIHY 168
>7296708 [J] KOG3204 60S ribosomal protein L13a
Length = 205
Score = 211 bits (538), Expect = 4e-55
Identities = 102/153 (66%), Positives = 121/153 (78%)
Query: 5 GKGHLLGRLASTVAKQLLNGQKIVVVRAEALNISGEFFRNKLKYHDYLRKATAFNKTRGP 64
G+GHLLGRLAS VAK LL G K+ VVR E LN+SG F+RNK+K+ YLRK N RGP
Sbjct: 13 GRGHLLGRLASVVAKYLLQGGKVAVVRCEELNLSGHFYRNKIKFLAYLRKRCNVNPARGP 72
Query: 65 FHFRAPSRIFYKAVRGMISHKTARGKAALERLKVFEGVPPPYDKKKRVVVPQALRVLRLK 124
FHFRAPSRIFYKAVRGMI HKT RG+AAL RL+VF+G+P PYDK++RVVVP A+RVL L+
Sbjct: 73 FHFRAPSRIFYKAVRGMIPHKTKRGQAALARLRVFDGIPSPYDKRRRVVVPIAMRVLTLR 132
Query: 125 PGRKYTTLGKLSTSVGWKYEDVVAKLEEKRKAR 157
RKY +G+LS VGW Y+DV+ LE KRKA+
Sbjct: 133 SDRKYCQVGRLSHEVGWHYQDVIKSLERKRKAK 165
>Hs22052436 [J] KOG3204 60S ribosomal protein L13a
Length = 203
Score = 209 bits (532), Expect = 2e-54
Identities = 99/158 (62%), Positives = 128/158 (80%)
Query: 5 GKGHLLGRLASTVAKQLLNGQKIVVVRAEALNISGEFFRNKLKYHDYLRKATAFNKTRGP 64
G+GHLLGRLA+ VAKQ+L G+K+VVV E +NISG F+RNKL Y +LRK + +RGP
Sbjct: 11 GRGHLLGRLAAIVAKQVLLGRKVVVVCCEGINISGNFYRNKLNYLAFLRKRMNTSPSRGP 70
Query: 65 FHFRAPSRIFYKAVRGMISHKTARGKAALERLKVFEGVPPPYDKKKRVVVPQALRVLRLK 124
+HFRAPSR+F++ VRGM+ HKT RG+AAL+RLKV +G+PPPYDKKKR+VVP AL+V+RLK
Sbjct: 71 YHFRAPSRVFWRTVRGMLPHKTKRGQAALDRLKVSDGIPPPYDKKKRMVVPAALKVVRLK 130
Query: 125 PGRKYTTLGKLSTSVGWKYEDVVAKLEEKRKARSAEYY 162
P RK+ LG+L+ VGWKY+ V A LEEKRK ++ +Y
Sbjct: 131 PTRKFAYLGRLAHEVGWKYQAVTATLEEKRKEKAKIHY 168
>At4g13170 [J] KOG3204 60S ribosomal protein L13a
Length = 206
Score = 194 bits (494), Expect = 5e-50
Identities = 94/158 (59%), Positives = 117/158 (73%)
Query: 5 GKGHLLGRLASTVAKQLLNGQKIVVVRAEALNISGEFFRNKLKYHDYLRKATAFNKTRGP 64
G+ H+LGRLAS AK+LLNGQ++VVVR E + +SG R K+KY +LRK + GP
Sbjct: 16 GRHHMLGRLASNTAKELLNGQEVVVVRCEEICLSGGLVRQKMKYMRFLRKRMNTKPSHGP 75
Query: 65 FHFRAPSRIFYKAVRGMISHKTARGKAALERLKVFEGVPPPYDKKKRVVVPQALRVLRLK 124
HFRAPS+IF++ VRGMI HKT RG AAL RLKVFEG+PPPYDK KR+V+P AL+VLRL+
Sbjct: 76 IHFRAPSKIFWRTVRGMIPHKTKRGAAALARLKVFEGIPPPYDKIKRMVIPDALKVLRLQ 135
Query: 125 PGRKYTTLGKLSTSVGWKYEDVVAKLEEKRKARSAEYY 162
G KY LG+LS+ VGW + D + +LE KRK RS Y
Sbjct: 136 SGHKYCLLGRLSSEVGWNHYDTIKELETKRKERSQVMY 173
>At3g24830 [J] KOG3204 60S ribosomal protein L13a
Length = 206
Score = 191 bits (486), Expect = 4e-49
Identities = 93/155 (60%), Positives = 114/155 (73%)
Query: 8 HLLGRLASTVAKQLLNGQKIVVVRAEALNISGEFFRNKLKYHDYLRKATAFNKTRGPFHF 67
H+ GRLAS +AK+LLNGQ +VVVR E + +SG R K+KY +LRK + GP HF
Sbjct: 19 HMCGRLASIIAKELLNGQSVVVVRCEEICLSGGLVRQKMKYMRFLRKRMNTKPSHGPIHF 78
Query: 68 RAPSRIFYKAVRGMISHKTARGKAALERLKVFEGVPPPYDKKKRVVVPQALRVLRLKPGR 127
RAPS+IF++ VRGMI HKT RG AAL RLKVFEGVPPPYDK KR+V+P AL+VLRL+ G
Sbjct: 79 RAPSKIFWRTVRGMIPHKTKRGAAALARLKVFEGVPPPYDKVKRMVIPDALKVLRLQAGH 138
Query: 128 KYTTLGKLSTSVGWKYEDVVAKLEEKRKARSAEYY 162
KY LG+LS+ VGW + D + +LE KRK RS Y
Sbjct: 139 KYCLLGRLSSEVGWNHYDTIKELEVKRKERSQALY 173
>At3g07110 [J] KOG3204 60S ribosomal protein L13a
Length = 206
Score = 188 bits (477), Expect = 4e-48
Identities = 94/155 (60%), Positives = 112/155 (71%)
Query: 8 HLLGRLASTVAKQLLNGQKIVVVRAEALNISGEFFRNKLKYHDYLRKATAFNKTRGPFHF 67
H+LGRLAS VAK LLNGQ IVVVR E + +SG R K+KY +LRK + GP HF
Sbjct: 19 HMLGRLASVVAKDLLNGQNIVVVRCEEICLSGGLVRQKMKYMRFLRKRMNTKPSHGPIHF 78
Query: 68 RAPSRIFYKAVRGMISHKTARGKAALERLKVFEGVPPPYDKKKRVVVPQALRVLRLKPGR 127
RAPS+IF++ VRGMI HKT RG AL RLKVFEGVP PYDK KR+VVP AL+VLRL+ G
Sbjct: 79 RAPSKIFWRTVRGMIPHKTKRGANALARLKVFEGVPTPYDKIKRMVVPDALKVLRLQAGH 138
Query: 128 KYTTLGKLSTSVGWKYEDVVAKLEEKRKARSAEYY 162
KY LG+LS+ VGW + D + +LE KRK R+ Y
Sbjct: 139 KYCLLGRLSSEVGWNHYDTIKELENKRKERAQAVY 173
>At5g48760 [J] KOG3204 60S ribosomal protein L13a
Length = 206
Score = 187 bits (476), Expect = 6e-48
Identities = 91/155 (58%), Positives = 114/155 (72%)
Query: 8 HLLGRLASTVAKQLLNGQKIVVVRAEALNISGEFFRNKLKYHDYLRKATAFNKTRGPFHF 67
H+LGRLAS AK+LLNGQK+V+VR E + +SG R K+KY +LRK + GP HF
Sbjct: 19 HMLGRLASITAKELLNGQKVVIVRCEEICLSGGLVRQKMKYMRFLRKRMNTKPSHGPIHF 78
Query: 68 RAPSRIFYKAVRGMISHKTARGKAALERLKVFEGVPPPYDKKKRVVVPQALRVLRLKPGR 127
RAPS+IF++ VRGMI HKT RG AAL RLKV+EGVP PYDK KR+V+P AL+VLRL+ G
Sbjct: 79 RAPSKIFWRTVRGMIPHKTKRGAAALARLKVYEGVPTPYDKIKRMVIPDALKVLRLQAGH 138
Query: 128 KYTTLGKLSTSVGWKYEDVVAKLEEKRKARSAEYY 162
KY LG+LS+ VGW + D + +LE KRK R+ Y
Sbjct: 139 KYCLLGRLSSEVGWNHYDTIKELETKRKERAHVVY 173
>CE01030 [J] KOG3204 60S ribosomal protein L13a
Length = 202
Score = 180 bits (457), Expect = 9e-46
Identities = 89/158 (56%), Positives = 113/158 (71%), Gaps = 1/158 (0%)
Query: 5 GKGHLLGRLASTVAKQLLNGQKIVVVRAEALNISGEFFRNKLKYHDYLRKATAFNKTRGP 64
GK HLLGRLAS VAK+LL G K+VV+RAE + ISG F R+KLKY +LRK N RG
Sbjct: 12 GKNHLLGRLASIVAKKLLQGDKVVVLRAEEIVISGNFHRSKLKYMSFLRKRCNINPARGA 71
Query: 65 FHFRAPSRIFYKAVRGMISHKTARGKAALERLKVFEGVPPPYDKKKRVVVPQALRVLRLK 124
FH+RAP +IF++ VRGM+ HKT RG AL+ L+ +EGVP Y K K + P A R RL+
Sbjct: 72 FHYRAPGKIFWRTVRGMLPHKTNRGNEALKNLRAYEGVPAKYQKTKSLHAPSASR-FRLQ 130
Query: 125 PGRKYTTLGKLSTSVGWKYEDVVAKLEEKRKARSAEYY 162
P RK+ +G+LS VGW+++DVVAKLE KRK + A Y+
Sbjct: 131 PRRKFCVVGRLSHEVGWQFQDVVAKLEAKRKVKGAAYF 168
>Hs17476849 [J] KOG3204 60S ribosomal protein L13a
Length = 359
Score = 161 bits (407), Expect = 6e-40
Identities = 81/144 (56%), Positives = 104/144 (71%), Gaps = 1/144 (0%)
Query: 20 QLLNGQKIVVVRAEALNISGEFFRNKLKYHDYLRKATAFNKTRGPFHFRAPSRIFYKAVR 79
+LL G+K+VVVR E +NISG F+RNKLK +L K N R +HFRAPSRIF+
Sbjct: 191 KLLLGRKVVVVRCEGINISGNFYRNKLKNLAFLGKRMNTNPFRSAYHFRAPSRIFWPTCE 250
Query: 80 G-MISHKTARGKAALERLKVFEGVPPPYDKKKRVVVPQALRVLRLKPGRKYTTLGKLSTS 138
M+ HKT RG A+L+ LKVF+G+PPPYDKKKR+VVP AL+V+RLKP RK+ LG+ +
Sbjct: 251 AYMLRHKTKRGHASLDCLKVFDGIPPPYDKKKRMVVPAALKVVRLKPTRKFALLGRQAQE 310
Query: 139 VGWKYEDVVAKLEEKRKARSAEYY 162
V WKY+ V A LEEKRK ++ +Y
Sbjct: 311 VRWKYQAVTATLEEKRKEKAKIHY 334
>ECU04g1380 [J] KOG3204 60S ribosomal protein L13a
Length = 198
Score = 107 bits (266), Expect = 1e-23
Identities = 62/153 (40%), Positives = 81/153 (52%), Gaps = 1/153 (0%)
Query: 7 GHLLGRLASTVAKQLLNGQKIVVVRAEALNISGEFFRNKLKYHDYLRKATAFNKTRGPFH 66
G + G+LA+ VAK LL G ++ VV AE G R K+ YL K N RGPFH
Sbjct: 13 GQVAGKLAAKVAKLLLEGVRVTVVCAEEAVFVGSLERAMDKFKQYLNKRCLVNPRRGPFH 72
Query: 67 FRAPSRIFYKAVRGMISHKTARGKAALERLKVFEGVPPPYDKKKRVVVPQALRVLRLKPG 126
FR P K +R MIS+K RGKAA+ RL +EG+P + + R V A P
Sbjct: 73 FREPRMHLAKIIRRMISYKKPRGKAAMSRLATYEGIPRELEGQPRYKVTCAFVKYTGNPN 132
Query: 127 RKYTTLGKLSTSVGWKYEDVVAKLEEKRKARSA 159
R Y TLGKL + GWK+ + L ++ K R +
Sbjct: 133 R-YVTLGKLLSMFGWKHAEAAKSLTDELKERES 164
>Hs22047599 [J] KOG3204 60S ribosomal protein L13a
Length = 162
Score = 103 bits (257), Expect = 1e-22
Identities = 55/105 (52%), Positives = 68/105 (64%), Gaps = 17/105 (16%)
Query: 5 GKGHLLGRLASTVAKQLLNGQKIVVVRAEALNISGEFFRNKLKYHDYLRKATAFNKTRGP 64
G+GHLLGRLA+ VAKQ++ G K+VVVR E +NISG F+RNKL
Sbjct: 11 GRGHLLGRLAAIVAKQVMLGWKVVVVRCEGINISGNFYRNKLN----------------- 53
Query: 65 FHFRAPSRIFYKAVRGMISHKTARGKAALERLKVFEGVPPPYDKK 109
FR PS IF VRGM+ HKT RG+A L+ L+VF+G+ P YDKK
Sbjct: 54 CSFRTPSCIFRWTVRGMLPHKTKRGQAVLDHLQVFDGISPLYDKK 98
>Hs20546806 [J] KOG3204 60S ribosomal protein L13a
Length = 303
Score = 97.1 bits (240), Expect = 1e-20
Identities = 62/157 (39%), Positives = 79/157 (49%), Gaps = 34/157 (21%)
Query: 7 GHLLGRLASTVAKQLLNGQKIVVVRAEALNISGEFFRNKLKYHDYLRKATAFNKTRGPFH 66
GHLLGRLA+ VAKQ+L G+K VVV E +NISG F RNKLKY +L K N +R P+H
Sbjct: 68 GHLLGRLAAIVAKQVLLGRKAVVVSCEGINISGSFCRNKLKYLAFLHKRMNTNPSRRPYH 127
Query: 67 FRAPSRIFYKAVRGMISHKTARGKAALERLKV-FEGVPPPYDKKKRVVVPQALRVLRLKP 125
F+ PSRIF++ + +G A+ KV G P
Sbjct: 128 FQVPSRIFWRQEKADGGSCCPQGHASEAYKKVCLSGAP---------------------- 165
Query: 126 GRKYTTLGKLSTSVGWKYEDVVAKLEEKRKARSAEYY 162
VGWKY+ V A LEEKRK ++ +Y
Sbjct: 166 -----------HEVGWKYQAVTATLEEKRKEKAEIHY 191
>Hs22050223 [J] KOG3204 60S ribosomal protein L13a
Length = 154
Score = 88.6 bits (218), Expect = 5e-18
Identities = 46/95 (48%), Positives = 64/95 (66%), Gaps = 1/95 (1%)
Query: 68 RAPSRIFYKAVRGMISHKTARGKAALERLKVFEGVPPPYDKKKRVVVPQALRVLRLKPGR 127
+A S IF + R S G+A+L+ LKVF+G PPPYDKKK++++P AL+V+RLK R
Sbjct: 26 QARSCIFQRIARHAASQDQG-GQASLDCLKVFDGTPPPYDKKKQMMIPAALKVMRLKLTR 84
Query: 128 KYTTLGKLSTSVGWKYEDVVAKLEEKRKARSAEYY 162
K+ LG L+ VGWK + V A LEEK K ++ +Y
Sbjct: 85 KFVYLGHLAHEVGWKCQTVTATLEEKSKEKAKIHY 119
>Hs18593018 [J] KOG3204 60S ribosomal protein L13a
Length = 105
Score = 88.6 bits (218), Expect = 5e-18
Identities = 42/66 (63%), Positives = 53/66 (79%)
Query: 5 GKGHLLGRLASTVAKQLLNGQKIVVVRAEALNISGEFFRNKLKYHDYLRKATAFNKTRGP 64
G+GHLL RLA+ VAKQ+L G+K+VVVR E +NISG F+RNKLKY +LRK + +RGP
Sbjct: 11 GRGHLLVRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLGFLRKRMNTHLSRGP 70
Query: 65 FHFRAP 70
+HFRAP
Sbjct: 71 YHFRAP 76
>Hs17474185 [J] KOG3204 60S ribosomal protein L13a
Length = 150
Score = 84.7 bits (208), Expect = 7e-17
Identities = 49/116 (42%), Positives = 67/116 (57%), Gaps = 28/116 (24%)
Query: 5 GKGHLLGRLASTVAKQLLNGQKIVVVRAEALNISGEFFRNKLKYHDYLRKATAFNKTRGP 64
G+GHLLG LA+ VAKQ+L G+K+V+VR E ++ISG F+ NKLKY +LRK + +RGP
Sbjct: 11 GRGHLLGCLAAIVAKQVLLGRKVVIVRCEGIDISGNFYGNKLKYLAFLRKRMNTSPSRGP 70
Query: 65 FHFRAPSRIFYKAVRGMISHKTARGKAALERLKVFEGVPPPYDKKKRVVVPQALRV 120
R +VF GVPPP ++KKR+V+P A +V
Sbjct: 71 TTCR----------------------------QVFGGVPPPRERKKRMVLPVAPKV 98
>Hs22049410_2 [J] KOG3204 60S ribosomal protein L13a
Length = 176
Score = 68.9 bits (167), Expect = 4e-12
Identities = 35/70 (50%), Positives = 46/70 (65%)
Query: 21 LLNGQKIVVVRAEALNISGEFFRNKLKYHDYLRKATAFNKTRGPFHFRAPSRIFYKAVRG 80
+L G K+VV+ E + ISG F+RNKLKY +L K N +RGP H RA S +F + RG
Sbjct: 1 VLLGWKVVVMYGEGIGISGNFYRNKLKYLAFLCKWMNTNPSRGPHHPRAASLLFRQTPRG 60
Query: 81 MISHKTARGK 90
M+ HKT RG+
Sbjct: 61 MLPHKTKRGQ 70
>Hs22050721 [J] KOG3204 60S ribosomal protein L13a
Length = 188
Score = 58.9 bits (141), Expect = 4e-09
Identities = 47/157 (29%), Positives = 69/157 (43%), Gaps = 46/157 (29%)
Query: 6 KGHLLGRLASTVAKQLLNGQKIVVVRAEALNISGEFFRNKLKYHDYLRKATAFNKTRGPF 65
+G+LLG LA+ V KQ+L G+K VVVR E++N+S F+RNKLKY + R+ + N P
Sbjct: 74 RGYLLGHLAAVVVKQVLLGRK-VVVRCESVNVSDNFYRNKLKYPAFFRRRMSTNPDEAP- 131
Query: 66 HFRAPSRIFYKAVRGMISHKTARGKAALERLKVFEGVPPPYDKKKRVVVPQALRVLRLKP 125
+IS PP ++ ++L
Sbjct: 132 ---------------VISW------------------PPAASSSRQCRARESL------- 151
Query: 126 GRKYTTLGKLSTSVGWKYEDVVAKLEEKRKARSAEYY 162
T G + KY+ V A LEEKRK ++ +Y
Sbjct: 152 ----PTWGAWLKRLAGKYQAVTATLEEKRKEKAETHY 184
>At1g78630 [J] KOG3203 Mitochondrial/chloroplast ribosomal protein L13
Length = 241
Score = 50.4 bits (119), Expect = 1e-06
Identities = 38/119 (31%), Positives = 56/119 (46%), Gaps = 13/119 (10%)
Query: 9 LLGRLASTVAKQLLN------------GQKIVVVRAEALNISGEFFRNKLKYHDYLRKAT 56
+LGRLAST+A + G ++VV AE + +SG+ KL R
Sbjct: 114 ILGRLASTIANHIRGKNLASYTPSVDMGAFVIVVNAEKVAVSGKKRNQKLYRRHSGRPGG 173
Query: 57 AFNKTRGPFHFRAPSRIFYKAVRGMISHKTARGKAALERLKVFEGVPPPYDKKKRVVVP 115
+T R P RI AVRGM+ K G+A LKV++G P++ +K + +P
Sbjct: 174 MTVETFDQLQQRIPERIVEHAVRGMLP-KGRLGRALFNHLKVYKGPDHPHEAQKPLDLP 231
>Hs18578388 [J] KOG3204 60S ribosomal protein L13a
Length = 208
Score = 48.5 bits (114), Expect = 6e-06
Identities = 22/43 (51%), Positives = 30/43 (69%)
Query: 120 VLRLKPGRKYTTLGKLSTSVGWKYEDVVAKLEEKRKARSAEYY 162
V+ LKP +K+ LG L+ VGWKY+ V A LEEKRK ++ +Y
Sbjct: 131 VVCLKPTKKFAYLGHLAHEVGWKYQAVTATLEEKRKEKAKTHY 173
Score = 35.8 bits (81), Expect = 0.037
Identities = 16/25 (64%), Positives = 21/25 (84%)
Query: 5 GKGHLLGRLASTVAKQLLNGQKIVV 29
G+GHLLG L + VAKQ+L G+K+VV
Sbjct: 108 GRGHLLGLLVAIVAKQVLLGRKVVV 132
>Hs20552096_3 [J] KOG3204 60S ribosomal protein L13a
Length = 139
Score = 43.5 bits (101), Expect = 2e-04
Identities = 36/133 (27%), Positives = 56/133 (42%), Gaps = 7/133 (5%)
Query: 31 RAEALNISGEFFRNKLKYHDYLRKATAFNKTRGPFHFRAPSRIFYKAVRGMISHKTARGK 90
+ E++NISG+F+RNKLKY +LRK N P HF A + + + + +
Sbjct: 1 QCESINISGKFYRNKLKYLGFLRK--RMNTFWRPCHFSALAASSGGWCKAHCPTRLTKAR 58
Query: 91 AALERLKVFEGVPPPYDKKK--RVVVPQALRVLRLKPGRKYTTLGKLSTSVGWKYEDVVA 148
+ P +K PQA K K G + V WKY+ V A
Sbjct: 59 PPSTTSRCLTAFHRPMTRKSFGGSCCPQACVSEAYK---KICPPGHRAYEVSWKYQAVTA 115
Query: 149 KLEEKRKARSAEY 161
L+++++ Y
Sbjct: 116 TLKKRKEKAKIHY 128
>YOR150w [J] KOG3203 Mitochondrial/chloroplast ribosomal protein L13
Length = 163
Score = 40.8 bits (94), Expect = 0.001
Identities = 36/113 (31%), Positives = 48/113 (41%), Gaps = 20/113 (17%)
Query: 10 LGRLASTVAKQLLN------------GQKIVVVRAEALNISGEFFRNKLKYHDYLR---- 53
LGRLAS +A L+ G +VV + + ++G+ F K + R
Sbjct: 28 LGRLASAIAITLIGRHKPVYHPSQDCGDYVVVTNCQKIRVTGKKFEQKTYWSHSGRPGQL 87
Query: 54 KATAFNKTRGPFHFRAPSRIFYKAVRGMISHKTARGKAALERLKVFEGVPPPY 106
K NK F I KAV GM+ R K L+RLKVF+G PY
Sbjct: 88 KLQTMNKVVADKGF---GEILKKAVSGMLPKNKLR-KQRLDRLKVFDGSENPY 136
>CE17862 [B] KOG1245 Chromatin remodeling complex WSTF-ISWI large subunit
(contains heterochromatin localization PHD and BROMO
domains)
Length = 1378
Score = 29.3 bits (64), Expect = 3.5
Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 11/58 (18%)
Query: 88 RGKAALERLKVFEGV------PPPYDKKKRVVVPQALRVL----RLKPGRKYTTLGKL 135
+ AA+ + FEGV PPP ++K VVVP+ L + R P R Y TL ++
Sbjct: 1233 KANAAMRDVLEFEGVLRQTPAPPPPKRQKTVVVPEVLELFNSIERANP-RLYKTLQQI 1289
>Hs5902044 [O] KOG0314 Predicted E3 ubiquitin ligase
Length = 948
Score = 28.9 bits (63), Expect = 4.5
Identities = 22/71 (30%), Positives = 35/71 (48%), Gaps = 8/71 (11%)
Query: 42 FRNKLKYHDYLRKATAFNKTRGPFHFRAPSRIFY-KAVRGMISHK--TARGKAALERLKV 98
+R++ + H Y R +++R P + R SR +A RG +K +G+ E
Sbjct: 568 YRSRSRSHGYHR-----SRSRSPPYRRYHSRSRSPQAFRGQSPNKRNVPQGETEREYFNR 622
Query: 99 FEGVPPPYDKK 109
+ VPPPYD K
Sbjct: 623 YREVPPPYDMK 633
>Hs22068920 [O] KOG0314 Predicted E3 ubiquitin ligase
Length = 1663
Score = 28.9 bits (63), Expect = 4.5
Identities = 22/71 (30%), Positives = 35/71 (48%), Gaps = 8/71 (11%)
Query: 42 FRNKLKYHDYLRKATAFNKTRGPFHFRAPSRIFY-KAVRGMISHK--TARGKAALERLKV 98
+R++ + H Y R +++R P + R SR +A RG +K +G+ E
Sbjct: 615 YRSRSRSHGYHR-----SRSRSPPYRRYHSRSRSPQAFRGQSPNKRNVPQGETEREYFNR 669
Query: 99 FEGVPPPYDKK 109
+ VPPPYD K
Sbjct: 670 YREVPPPYDMK 680
>7300754 [I] KOG1890 Phosphoinositide phosphatase SAC1
Length = 987
Score = 28.1 bits (61), Expect = 7.7
Identities = 32/116 (27%), Positives = 46/116 (39%), Gaps = 14/116 (12%)
Query: 85 KTARGKAALERLKVFEGVPPPYDKKKRVVVPQALR----VLRLKPG----RKYTTLGKLS 136
+TA GKA LE V G+ PPY +P+ L+ VL G R+Y L
Sbjct: 467 QTAIGKAVLESQLVKLGLSPPY-----TPIPEQLKSPFMVLWANNGDIISRQYAGTNALK 521
Query: 137 TSVGWKYEDVVAKLEEKRKARSAEYYLXXXXXXXXXXXXXXTVGTEV-SEKLAALG 191
E ++ + + + YYL +G +V SE L+ALG
Sbjct: 522 GDYTRTGERKISGMMKDGMNSANRYYLARFKDSYRQATIDLMLGNQVSSESLSALG 577
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.320 0.136 0.387
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,914,368
Number of Sequences: 60738
Number of extensions: 373592
Number of successful extensions: 840
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 802
Number of HSP's gapped (non-prelim): 37
length of query: 192
length of database: 30,389,216
effective HSP length: 100
effective length of query: 92
effective length of database: 24,315,416
effective search space: 2237018272
effective search space used: 2237018272
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)