ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactVI1414 good K KOG0260 Transcription RNA polymerase II, large subunit
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactVI1414 501533 496374 -1720
(1720 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YDL140c [K] KOG0260 RNA polymerase II large subunit 2665 0.0
SPBC28F2.12 [K] KOG0260 RNA polymerase II large subunit 1937 0.0
At4g35800 [K] KOG0260 RNA polymerase II large subunit 1580 0.0
7292659 [K] KOG0260 RNA polymerase II large subunit 1508 0.0
CE28300 [K] KOG0260 RNA polymerase II large subunit 1506 0.0
Hs4505939 [K] KOG0260 RNA polymerase II large subunit 1504 0.0
ECU03g0290 [K] KOG0260 RNA polymerase II large subunit 1256 0.0
SPBC651.08c [K] KOG0261 RNA polymerase III large subunit 725 0.0
Hs5902062 [K] KOG0261 RNA polymerase III large subunit 714 0.0
YOR116c [K] KOG0261 RNA polymerase III large subunit 708 0.0
CE04196 [K] KOG0261 RNA polymerase III large subunit 693 0.0
ECU07g0090 [K] KOG0261 RNA polymerase III large subunit 541 e-153
At5g60040 [K] KOG0261 RNA polymerase III large subunit 499 e-140
7303170 [K] KOG0262 RNA polymerase I large subunit 441 e-123
ECU04g1400 [K] KOG0262 RNA polymerase I large subunit 387 e-107
YOR341w [K] KOG0262 RNA polymerase I large subunit 351 7e-96
Hs7661686 [K] KOG0262 RNA polymerase I large subunit 344 6e-94
SPBC4C3.05c [K] KOG0262 RNA polymerase I large subunit 343 1e-93
CE22157 [K] KOG0262 RNA polymerase I large subunit 339 3e-92
7293125 [K] KOG0261 RNA polymerase III large subunit 339 3e-92
At3g57660 [K] KOG0262 RNA polymerase I large subunit 335 5e-91
At1g63020_1 [K] KOG0260 RNA polymerase II large subunit 197 1e-49
At2g40030 [K] KOG0260 RNA polymerase II large subunit 165 7e-40
>YDL140c [K] KOG0260 RNA polymerase II large subunit
Length = 1733
Score = 2665 bits (6909), Expect = 0.0
Identities = 1317/1537 (85%), Positives = 1427/1537 (92%), Gaps = 2/1537 (0%)
Query: 1 MVDFPYSSAPLRTIKEVQFGLFSPEEVRGISVAKIEFPETMDESQMKAKIGGLNDPRLGS 60
MV YSSAPLRT+KEVQFGLFSPEEVR ISVAKI FPETMDE+Q +AKIGGLNDPRLGS
Sbjct: 1 MVGQQYSSAPLRTVKEVQFGLFSPEEVRAISVAKIRFPETMDETQTRAKIGGLNDPRLGS 60
Query: 61 IDRNYKCQTCGEGMAECPGHFGHIELAKPVFHIGFLSKIKKVCESVCMHCGKLLLDEYNE 120
IDRN KCQTC EGM ECPGHFGHI+LAKPVFH+GF++KIKKVCE VCMHCGKLLLDE+NE
Sbjct: 61 IDRNLKCQTCQEGMNECPGHFGHIDLAKPVFHVGFIAKIKKVCECVCMHCGKLLLDEHNE 120
Query: 121 QMRQAIKIKDPKRRFNAVWTLCKAKMVCETEVPSPDDPTVFLSRGGCGHIQPSIRKDGLS 180
MRQA+ IKD K+RF A+WTLCK KMVCET+VPS DDPT +SRGGCG+ QP+IRKDGL
Sbjct: 121 LMRQALAIKDSKKRFAAIWTLCKTKMVCETDVPSEDDPTQLVSRGGCGNTQPTIRKDGLK 180
Query: 181 LVGTWKKDKNADDSDQPEKRIISAEEILNVFKHISPEDGWRLGFNEDFSRPEWMILTXXX 240
LVG+WKKD+ D+D+PE R++S EEILN+FKHIS +D LGFNE FSRPEWMILT
Sbjct: 181 LVGSWKKDRATGDADEPELRVLSTEEILNIFKHISVKDFTSLGFNEVFSRPEWMILTCLP 240
Query: 241 XXXXXXXXSISFNESQRGEDDLTYKLGDILKANINVQKLEINGSPQHVIQESESLLQFHV 300
SISFNESQRGEDDLT+KL DILKANI+++ LE NG+P H I+E+ESLLQFHV
Sbjct: 241 VPPPPVRPSISFNESQRGEDDLTFKLADILKANISLETLEHNGAPHHAIEEAESLLQFHV 300
Query: 301 ATYMDNDIAGQPQAVQKSGRPIKSIRARLKGKEGRIRGNLMGKRVDFSARTVISGDPNLD 360
ATYMDNDIAGQPQA+QKSGRP+KSIRARLKGKEGRIRGNLMGKRVDFSARTVISGDPNL+
Sbjct: 301 ATYMDNDIAGQPQALQKSGRPVKSIRARLKGKEGRIRGNLMGKRVDFSARTVISGDPNLE 360
Query: 361 LDQVGVPKSIAKTLTYPEVVTPYNIDRLTQLVRNGPNEHPGAKYVIRESGDRIDLRYSKR 420
LDQVGVPKSIAKTLTYPEVVTPYNIDRLTQLVRNGPNEHPGAKYVIR+SGDRIDLRYSKR
Sbjct: 361 LDQVGVPKSIAKTLTYPEVVTPYNIDRLTQLVRNGPNEHPGAKYVIRDSGDRIDLRYSKR 420
Query: 421 AGDIQLQYGWKVERHITDNDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNA 480
AGDIQLQYGWKVERHI DNDPVLFNRQPSLHKMSMMAHRVKV+PYSTFRLNLSVTSPYNA
Sbjct: 421 AGDIQLQYGWKVERHIMDNDPVLFNRQPSLHKMSMMAHRVKVIPYSTFRLNLSVTSPYNA 480
Query: 481 DFDGDEMNLHVPQSEETRAELSQLCAVPLQIVSPQSNKPCMGIVQDTLCGIRKMTLRDTF 540
DFDGDEMNLHVPQSEETRAELSQLCAVPLQIVSPQSNKPCMGIVQDTLCGIRK+TLRDTF
Sbjct: 481 DFDGDEMNLHVPQSEETRAELSQLCAVPLQIVSPQSNKPCMGIVQDTLCGIRKLTLRDTF 540
Query: 541 IELDQVLNMLYWIPDWDGIIPTPAILKPVPLWSGKQVLSMAIPNGIHLQRFDDGTTFLSP 600
IELDQVLNMLYW+PDWDG+IPTPAI+KP PLWSGKQ+LS+AIPNGIHLQRFD+GTT LSP
Sbjct: 541 IELDQVLNMLYWVPDWDGVIPTPAIIKPKPLWSGKQILSVAIPNGIHLQRFDEGTTLLSP 600
Query: 601 KDNGMLIIDGKIIFGVVDKKTVGSSSGGLIHVVTREKGPEICARLFSNIQKVVNYWLLHN 660
KDNGMLIIDG+IIFGVV+KKTVGSS+GGLIHVVTREKGP++CA+LF NIQKVVN+WLLHN
Sbjct: 601 KDNGMLIIDGQIIFGVVEKKTVGSSNGGLIHVVTREKGPQVCAKLFGNIQKVVNFWLLHN 660
Query: 661 GFSIGIGDTIADEKTMREITEAIAVAKKKVEDVTKEAQANLLTAKHGMTLRESFEDNVVR 720
GFS GIGDTIAD TMREITE IA AKKKV DVTKEAQANLLTAKHGMTLRESFEDNVVR
Sbjct: 661 GFSTGIGDTIADGPTMREITETIAEAKKKVLDVTKEAQANLLTAKHGMTLRESFEDNVVR 720
Query: 721 YLNEARDKAGRSAEVNLKDLNNVKQMVSAGSKGSFINIAQMSACVGQQSVEGKRIAFGFA 780
+LNEARDKAGR AEVNLKDLNNVKQMV AGSKGSFINIAQMSACVGQQSVEGKRIAFGF
Sbjct: 721 FLNEARDKAGRLAEVNLKDLNNVKQMVMAGSKGSFINIAQMSACVGQQSVEGKRIAFGFV 780
Query: 781 DRTLPHFSKDDYSPESKGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTAETGYIQRR 840
DRTLPHFSKDDYSPESKGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTAETGYIQRR
Sbjct: 781 DRTLPHFSKDDYSPESKGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTAETGYIQRR 840
Query: 841 LVKALEDIMVHYDGTTRNSLGNVIQFIYGEDGMDAAHIEKQSIDTIPGSDSAFERRYRID 900
LVKALEDIMVHYD TTRNSLGNVIQFIYGEDGMDAAHIEKQS+DTI GSD+AFE+RYR+D
Sbjct: 841 LVKALEDIMVHYDNTTRNSLGNVIQFIYGEDGMDAAHIEKQSLDTIGGSDAAFEKRYRVD 900
Query: 901 LLNEEYALDPSLLESGSEIIGDSKLQLLLNDEYKQLVDDRQILRRVFVDGEHNWPLPVNI 960
LLN ++ LDPSLLESGSEI+GD KLQ+LL++EYKQLV DR+ LR VFVDGE NWPLPVNI
Sbjct: 901 LLNTDHTLDPSLLESGSEILGDLKLQVLLDEEYKQLVKDRKFLREVFVDGEANWPLPVNI 960
Query: 961 KRIIQNSQQTFRIDQTKPTDLTIEDVISGVRKLQEKLLVVRGKSDILKEAQQNAITLFCC 1020
+RIIQN+QQTF ID TKP+DLTI+D++ GV+ LQE LLV+RGK++I++ AQ++A+TLFCC
Sbjct: 961 RRIIQNAQQTFHIDHTKPSDLTIKDIVLGVKDLQENLLVLRGKNEIIQNAQRDAVTLFCC 1020
Query: 1021 LLRSRLATRRVIEEYRLNRQTFDWVLNNIEAQFLRSIVHPGEMVGVLAAQSIGEPATQMT 1080
LLRSRLATRRV++EYRL +Q FDWVL+NIEAQFLRS+VHPGEMVGVLAAQSIGEPATQMT
Sbjct: 1021 LLRSRLATRRVLQEYRLTKQAFDWVLSNIEAQFLRSVVHPGEMVGVLAAQSIGEPATQMT 1080
Query: 1081 LNTFHFAGVASKKVTSGVPRLKEILNVAKNMKTPSLTVYLDPEYAADQEKAKEIRSAIEH 1140
LNTFHFAGVASKKVTSGVPRLKEILNVAKNMKTPSLTVYL+P +AADQE+AK IRSAIEH
Sbjct: 1081 LNTFHFAGVASKKVTSGVPRLKEILNVAKNMKTPSLTVYLEPGHAADQEQAKLIRSAIEH 1140
Query: 1141 TTLKSVTVASEIYYDPDPRSTVIEDDEEIIQLHFSLMDEETEKSLDYQSPWLLRLELDRA 1200
TTLKSVT+ASEIYYDPDPRSTVI +DEEIIQLHFSL+DEE E+S D QSPWLLRLELDRA
Sbjct: 1141 TTLKSVTIASEIYYDPDPRSTVIPEDEEIIQLHFSLLDEEAEQSFDQQSPWLLRLELDRA 1200
Query: 1201 AMTDKDLTMGQVGEKIKETFKNDLFVIWSEDNAEKLIIRCRVIRDPKTLDADVEAEEDHM 1260
AM DKDLTMGQVGE+IK+TFKNDLFVIWSEDN EKLIIRCRV+R PK+LDA+ EAEEDHM
Sbjct: 1201 AMNDKDLTMGQVGERIKQTFKNDLFVIWSEDNDEKLIIRCRVVR-PKSLDAETEAEEDHM 1259
Query: 1261 LKKIENSMLEKITLRGVEDITRVVMMKYDRKVPSETGEYHKVPEWVLETDGVNLSEVMTV 1320
LKKIEN+MLE ITLRGVE+I RVVMMKYDRKVPS TGEY K PEWVLETDGVNLSEVMTV
Sbjct: 1260 LKKIENTMLENITLRGVENIERVVMMKYDRKVPSPTGEYVKEPEWVLETDGVNLSEVMTV 1319
Query: 1321 SGVDGSRIYTNSFIDIMNVLGIEAGRAALYREVYNVIASDGSYVNYRHMALLVDVMTSQG 1380
G+D +RIYTNSFIDIM VLGIEAGRAALY+EVYNVIASDGSYVNYRHMALLVDVMT+QG
Sbjct: 1320 PGIDPTRIYTNSFIDIMEVLGIEAGRAALYKEVYNVIASDGSYVNYRHMALLVDVMTTQG 1379
Query: 1381 FLMSVTRHGFNRADTGALMRCSFEETVEILFEAGAAAELDDCRGVSENVILGQMAPIGTG 1440
L SVTRHGFNR++TGALMRCSFEETVEILFEAGA+AELDDCRGVSENVILGQMAPIGTG
Sbjct: 1380 GLTSVTRHGFNRSNTGALMRCSFEETVEILFEAGASAELDDCRGVSENVILGQMAPIGTG 1439
Query: 1441 AFDVMIDDESLVKYMPEHKEVKTE-GQEGGATPYSNESGLANAEINVKDELMFSPLVESG 1499
AFDVMID+ESLVKYMPE K + E GQ+GG TPYSNESGL NA+++VKDELMFSPLV+SG
Sbjct: 1440 AFDVMIDEESLVKYMPEQKITEIEDGQDGGVTPYSNESGLVNADLDVKDELMFSPLVDSG 1499
Query: 1500 GADALAGGFTAYGGADYGSATSPFSGYGNGPTSPGFG 1536
DA+AGGFTAYGGADYG ATSPF YG PTSPGFG
Sbjct: 1500 SNDAMAGGFTAYGGADYGEATSPFGAYGEAPTSPGFG 1536
>SPBC28F2.12 [K] KOG0260 RNA polymerase II large subunit
Length = 1752
Score = 1937 bits (5019), Expect = 0.0
Identities = 971/1568 (61%), Positives = 1196/1568 (75%), Gaps = 40/1568 (2%)
Query: 2 VDFPYSSAPLRTIKEVQFGLFSPEEVRGISVAKIEFPETMDESQMKAKIGGLNDPRLGSI 61
+ F SS PLR ++EVQFG+ SPEE+R +SVAKIEFPETMDES + ++GGL DPRLG+I
Sbjct: 4 IQFSPSSVPLRRVEEVQFGILSPEEIRSMSVAKIEFPETMDESGQRPRVGGLLDPRLGTI 63
Query: 62 DRNYKCQTCGEGMAECPGHFGHIELAKPVFHIGFLSKIKKVCESVCMHCGKLLLDEYNEQ 121
DR +KCQTCGE MA+CPGHFGHIELAKPVFHIGFLSKIKK+ E VC +CGKL +D N +
Sbjct: 64 DRQFKCQTCGETMADCPGHFGHIELAKPVFHIGFLSKIKKILECVCWNCGKLKIDSSNPK 123
Query: 122 MRQAIKIKDPKRRFNAVWTLCKAKMVCETEVPSPDD------PTVFLSRGGCGHIQPSIR 175
+ +DPK R NAVW +CK KMVC+T + + D P+ + GGCG QP+IR
Sbjct: 124 FNDTQRYRDPKNRLNAVWNVCKTKMVCDTGLSAGSDNFDLSNPSANMGHGGCGAAQPTIR 183
Query: 176 KDGLSLVGTWKKDKNADDSDQPEKRIISAEEILNVFKHISPEDGWRLGFNEDFSRPEWMI 235
KDGL L G+WK+ K D+SD PEKR++S E+ +F HIS ED LG NE ++RP+WMI
Sbjct: 184 KDGLRLWGSWKRGK--DESDLPEKRLLSPLEVHTIFTHISSEDLAHLGLNEQYARPDWMI 241
Query: 236 LTXXXXXXXXXXXSISFNESQRGEDDLTYKLGDILKANINVQKLEINGSPQHVIQESESL 295
+T SIS + + RGEDDLT+KL DI+KAN NV++ E G+P H++ E E L
Sbjct: 242 ITVLPVPPPSVRPSISVDGTSRGEDDLTHKLSDIIKANANVRRCEQEGAPAHIVSEYEQL 301
Query: 296 LQFHVATYMDNDIAGQPQAVQKSGRPIKSIRARLKGKEGRIRGNLMGKRVDFSARTVISG 355
LQFHVATYMDN+IAGQPQA+QKSGRP+KSIRARLKGKEGR+RGNLMGKRVDFSARTVI+G
Sbjct: 302 LQFHVATYMDNEIAGQPQALQKSGRPLKSIRARLKGKEGRLRGNLMGKRVDFSARTVITG 361
Query: 356 DPNLDLDQVGVPKSIAKTLTYPEVVTPYNIDRLTQLVRNGPNEHPGAKYVIRESGDRIDL 415
DPNL LD++GVP+SIAKTLTYPE VTPYNI +L +LVRNGP+EHPGAKY+IR++G+RIDL
Sbjct: 362 DPNLSLDELGVPRSIAKTLTYPETVTPYNIYQLQELVRNGPDEHPGAKYIIRDTGERIDL 421
Query: 416 RYSKRAGDIQLQYGWKVERHITDNDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRLNLSVT 475
RY KRAGDI L+YGW+VERHI D D V+FNRQPSLHKMSMM HR++VMPYSTFRLNLSVT
Sbjct: 422 RYHKRAGDIPLRYGWRVERHIRDGDVVIFNRQPSLHKMSMMGHRIRVMPYSTFRLNLSVT 481
Query: 476 SPYNADFDGDEMNLHVPQSEETRAELSQLCAVPLQIVSPQSNKPCMGIVQDTLCGIRKMT 535
SPYNADFDGDEMN+HVPQSEETRAE+ ++ VP QIVSPQSNKP MGIVQDTL G+RK +
Sbjct: 482 SPYNADFDGDEMNMHVPQSEETRAEIQEITMVPKQIVSPQSNKPVMGIVQDTLAGVRKFS 541
Query: 536 LRDTFIELDQVLNMLYWIPDWDGIIPTPAILKPVPLWSGKQVLSMAIPNGIHLQRFDDGT 595
LRD F+ + V+N++ W+PDWDGI+P P ILKP LW+GKQ+LS+ IP GI+L R DD
Sbjct: 542 LRDNFLTRNAVMNIMLWVPDWDGILPPPVILKPKVLWTGKQILSLIIPKGINLIRDDDKQ 601
Query: 596 TFLSPKDNGMLIIDGKIIFGVVDKKTVGSSSGGLIHVVTREKGPEICARLFSNIQKVVNY 655
+ +P D+GMLI +G+II+GVVDKKTVG+S GGL+H + +EKGPEIC F+ IQ+VVNY
Sbjct: 602 SLSNPTDSGMLIENGEIIYGVVDKKTVGASQGGLVHTIWKEKGPEICKGFFNGIQRVVNY 661
Query: 656 WLLHNGFSIGIGDTIADEKTMREITEAIAVAKKKVEDVTKEAQANLLTAKHGMTLRESFE 715
WLLHNGFSIGIGDTIAD TM+E+T + A+++V + ++AQ N L + GMTLRESFE
Sbjct: 662 WLLHNGFSIGIGDTIADADTMKEVTRTVKEARRQVAECIQDAQHNRLKPEPGMTLRESFE 721
Query: 716 DNVVRYLNEARDKAGRSAEVNLKDLNNVKQMVSAGSKGSFINIAQMSACVGQQSVEGKRI 775
V R LN+ARD AGRSAE +LKD NNVKQMV+AGSKGSFINI+QMSACVGQQ VEGKRI
Sbjct: 722 AKVSRILNQARDNAGRSAEHSLKDSNNVKQMVAAGSKGSFINISQMSACVGQQIVEGKRI 781
Query: 776 AFGFADRTLPHFSKDDYSPESKGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTAETG 835
FGF RTLPHF KDD SPES+GF+ENSYLRGLTPQEFFFHAM GREGLIDTAVKTAETG
Sbjct: 782 PFGFKYRTLPHFPKDDDSPESRGFIENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETG 841
Query: 836 YIQRRLVKALEDIMVHYDGTTRNSLGNVIQFIYGEDGMDAAHIEKQSIDTIPGSDSAFER 895
YIQRRLVKA+ED+MV YDGT RN++G++IQF YGEDG+DA +E Q D++ S FE+
Sbjct: 842 YIQRRLVKAMEDVMVRYDGTVRNAMGDIIQFAYGEDGLDATLVEYQVFDSLRLSTKQFEK 901
Query: 896 RYRIDLLNEEYALDPSLLESGSEIIGDSKLQLLLNDEYKQLVDDRQIL-RRVFVDGEHNW 954
+YRIDL+ E+ +L L + I DS +Q LL++EY QLV DR++L + +F G+ W
Sbjct: 902 KYRIDLM-EDRSLS---LYMENSIENDSSVQDLLDEEYTQLVADRELLCKFIFPKGDARW 957
Query: 955 PLPVNIKRIIQNSQQTFRIDQTKPTDLTIEDVISGVRKLQEKLLVVRGKSDILKEAQQNA 1014
PLPVN++RIIQN+ Q F ++ KPTDL D+I+G+ +L KL + RG I ++ Q NA
Sbjct: 958 PLPVNVQRIIQNALQIFHLEAKKPTDLLPSDIINGLNELIAKLTIFRGSDRITRDVQNNA 1017
Query: 1015 ITLFCCLLRSRLATRRVIEEYRLNRQTFDWVLNNIEAQFLRSIVHPGEMVGVLAAQSIGE 1074
LF LLRS+ A +RVI EYRLN+ F+W++ +EA+F +++V PGEMVG LAAQSIGE
Sbjct: 1018 TLLFQILLRSKFAVKRVIMEYRLNKVAFEWIMGEVEARFQQAVVSPGEMVGTLAAQSIGE 1077
Query: 1075 PATQMTLNTFHFAGVASKKVTSGVPRLKEILNVAKNMKTPSLTVYLDPEYAADQEKAKEI 1134
PATQMTLNTFH+AGV+SK VT GVPRLKEILNVAKN+KTPSLT+YL P AA+ + AK +
Sbjct: 1078 PATQMTLNTFHYAGVSSKNVTLGVPRLKEILNVAKNIKTPSLTIYLMPWIAANMDLAKNV 1137
Query: 1135 RSAIEHTTLKSVTVASEIYYDPDPRSTVIEDDEEIIQLHFSLMDEETEKSLDYQSPWLLR 1194
++ IEHTTL +VT A+EI+YDPDP+ TVIE+D++ ++ F++ DEE E++L QSPWLLR
Sbjct: 1138 QTQIEHTTLSTVTSATEIHYDPDPQDTVIEEDKDFVEAFFAIPDEEVEENLYKQSPWLLR 1197
Query: 1195 LELDRAAMTDKDLTMGQVGEKIKETFKNDLFVIWSEDNAEKLIIRCRVIRDP--KTLDAD 1252
LELDRA M DK L+M V KI E+F+ DLF IWSEDNA+KLIIRCR+IRD K D D
Sbjct: 1198 LELDRAKMLDKKLSMSDVAGKIAESFERDLFTIWSEDNADKLIIRCRIIRDDDRKAEDDD 1257
Query: 1253 VEAEEDHMLKKIENSMLEKITLRGVEDITRVVMMKYDRKVPSETGEYHKVPEWVLETDGV 1312
EED LK IE MLE I+LRGV +ITRV MM++ E G + + EWVLETDG+
Sbjct: 1258 NMIEEDVFLKTIEGHMLESISLRGVPNITRVYMMEHKIVRQIEDGTFERADEWVLETDGI 1317
Query: 1313 NLSEVMTVSGVDGSRIYTNSFIDIMNVLGIEAGRAALYREVYNVIASDGSYVNYRHMALL 1372
NL+E MTV GVD +R Y+NSF++I+ +LGIEA R+AL +E+ NVI DGSYVNYRH+ALL
Sbjct: 1318 NLTEAMTVEGVDATRTYSNSFVEILQILGIEATRSALLKELRNVIEFDGSYVNYRHLALL 1377
Query: 1373 VDVMTSQGFLMSVTRHGFNRADTGALMRCSFEETVEILFEAGAAAELDDCRGVSENVILG 1432
DVMTS+G LM++TRHG NRA+TGALMRCSFEETVEIL +A A+ E DDC+G+SEN++LG
Sbjct: 1378 CDVMTSRGHLMAITRHGINRAETGALMRCSFEETVEILMDAAASGEKDDCKGISENIMLG 1437
Query: 1433 QMAPIGTGAFDVMIDDESLVKYMPEHKEVKTEGQ--------EGGATPYSNESGLANAEI 1484
Q+AP+GTGAFD+ +D + L+ Y G EG TPY + + +
Sbjct: 1438 QLAPMGTGAFDIYLDQDMLMNYSLGTAVPTLAGSGMGTSQLPEGAGTPYERSPMVDSGFV 1497
Query: 1485 NVKDELMFSPLVESG-------GADALAGGFTAYGGADYGSATSPFS-----GYG----- 1527
D FSPLV+ G G L G + Y G TSPFS GYG
Sbjct: 1498 GSPDAAAFSPLVQGGSEGREGFGDYGLLGAASPYKGVQSPGYTSPFSSAMSPGYGLTSPS 1557
Query: 1528 NGPTSPGF 1535
P+SPG+
Sbjct: 1558 YSPSSPGY 1565
>At4g35800 [K] KOG0260 RNA polymerase II large subunit
Length = 1840
Score = 1580 bits (4091), Expect = 0.0
Identities = 833/1561 (53%), Positives = 1104/1561 (70%), Gaps = 42/1561 (2%)
Query: 4 FPYSSAPLRTIKEVQFGLFSPEEVRGISVAKIEFPETMDESQMKAKIGGLNDPRLGSIDR 63
FP+S A + ++ VQFG+ SP+E+R +SV +E ET ++ K K+GGL+D RLG+IDR
Sbjct: 5 FPFSPAEVSKVRVVQFGILSPDEIRQMSVIHVEHSETTEKG--KPKVGGLSDTRLGTIDR 62
Query: 64 NYKCQTCGEGMAECPGHFGHIELAKPVFHIGFLSKIKKVCESVCMHCGKLLLDEYNEQM- 122
KC+TC MAECPGHFG++ELAKP++H+GF+ + + VC +C K+L DE +
Sbjct: 63 KVKCETCMANMAECPGHFGYLELAKPMYHVGFMKTVLSIMRCVCFNCSKILADEVCRSLF 122
Query: 123 RQAIKIKDPKRRFNAVWTLCKAKMVCE-------TEVPSPDDPTVFLSRGGCGHIQPSIR 175
RQA+KIK+PK R + CK K C+ + S D+P V SRGGCG QP +
Sbjct: 123 RQAMKIKNPKNRLKKILDACKNKTKCDGGDDIDDVQSHSTDEP-VKKSRGGCGAQQPKLT 181
Query: 176 KDGLSLVGTWK--KDKNADDSDQPE----KRIISAEEILNVFKHISPEDGWRLGFNEDFS 229
+G+ ++ +K + KN + PE K+ + A+ +L+V K IS D LGFN F+
Sbjct: 182 IEGMKMIAEYKIQRKKNDEPDQLPEPAERKQTLGADRVLSVLKRISDADCQLLGFNPKFA 241
Query: 230 RPEWMILTXXXXXXXXXXXSISFNESQRGEDDLTYKLGDILKANINVQKLEINGSPQHVI 289
RP+WMIL S+ + + R EDDLT++L I++ N N+++ E NG+P H+I
Sbjct: 242 RPDWMILEVLPIPPPPVRPSVMMDATSRSEDDLTHQLAMIIRHNENLKRQEKNGAPAHII 301
Query: 290 QESESLLQFHVATYMDNDIAGQPQAVQKSGRPIKSIRARLKGKEGRIRGNLMGKRVDFSA 349
E LLQFH+ATY DN++ GQP+A QKSGRPIKSI +RLK KEGRIRGNLMGKRVDFSA
Sbjct: 302 SEFTQLLQFHIATYFDNELPGQPRATQKSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA 361
Query: 350 RTVISGDPNLDLDQVGVPKSIAKTLTYPEVVTPYNIDRLTQLVRNGPNEHPG---AKYVI 406
RTVI+ DP +++D++GVP SIA LTYPE VTPYNI+RL +LV GP+ PG AKY+I
Sbjct: 362 RTVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVDYGPHPPPGKTGAKYII 421
Query: 407 RESGDRIDLRYSKRAGDIQLQYGWKVERHITDNDPVLFNRQPSLHKMSMMAHRVKVMPYS 466
R+ G R+DLRY K++ D L+ G+KVERH+ D D VLFNRQPSLHKMS+M HR+++MPYS
Sbjct: 422 RDDGQRLDLRYLKKSSDQHLELGYKVERHLQDGDFVLFNRQPSLHKMSIMGHRIRIMPYS 481
Query: 467 TFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAELSQLCAVPLQIVSPQSNKPCMGIVQD 526
TFRLNLSVTSPYNADFDGDEMN+HVPQS ETRAE+ +L VP IVSPQ+N+P MGIVQD
Sbjct: 482 TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQD 541
Query: 527 TLCGIRKMTLRDTFIELDQVLNMLYWIPDWDGIIPTPAILKPVPLWSGKQVLSMAIPNGI 586
TL G RK+T RDTFIE D +N L W D+DG +P PAILKP PLW+GKQV ++ IP I
Sbjct: 542 TLLGCRKITKRDTFIEKDVFMNTLMWWEDFDGKVPAPAILKPRPLWTGKQVFNLIIPKQI 601
Query: 587 HLQRF-----DDGTTFLSPKDNGMLIIDGKIIFGVVDKKTVGSSSGGLIHVVTREKGPEI 641
+L R+ D T F++P D + I G+++ G + KKT+G+S+G L+HV+ E GP+
Sbjct: 602 NLLRYSAWHADTETGFITPGDTQVRIERGELLAGTLCKKTLGTSNGSLVHVIWEEVGPDA 661
Query: 642 CARLFSNIQKVVNYWLLHNGFSIGIGDTIADEKTMREITEAIAVAKKKVEDVTKEAQANL 701
+ + Q +VNYWLL NGF+IGIGDTIAD TM +I E I+ AK V+D+ ++ Q
Sbjct: 662 ARKFLGHTQWLVNYWLLQNGFTIGIGDTIADSSTMEKINETISNAKTAVKDLIRQFQGKE 721
Query: 702 LTAKHGMTLRESFEDNVVRYLNEARDKAGRSAEVNLKDLNNVKQMVSAGSKGSFINIAQM 761
L + G T+R++FE+ V + LN+ARD AG SA+ +L + NN+K MV+AGSKGSFINI+QM
Sbjct: 722 LDPEPGRTMRDTFENRVNQVLNKARDDAGSSAQKSLAETNNLKAMVTAGSKGSFINISQM 781
Query: 762 SACVGQQSVEGKRIAFGFADRTLPHFSKDDYSPESKGFVENSYLRGLTPQEFFFHAMGGR 821
+ACVGQQ+VEGKRI FGF RTLPHF+KDDY PES+GFVENSYLRGLTPQEFFFHAMGGR
Sbjct: 782 TACVGQQNVEGKRIPFGFDGRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGR 841
Query: 822 EGLIDTAVKTAETGYIQRRLVKALEDIMVHYDGTTRNSLGNVIQFIYGEDGMDAAHIEKQ 881
EGLIDTAVKT+ETGYIQRRLVKA+EDIMV YDGT RNSLG+VIQF+YGEDGMDA IE Q
Sbjct: 842 EGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQ 901
Query: 882 SIDTIPGSDSAFERRYRIDLLNEEYALDPSLL--ESGSEIIGDSKLQLLLNDEYKQLVDD 939
+D++ S F+R ++ ++ +E + +P+ L E ++ G +L+ + + EY +L D
Sbjct: 902 KLDSLKMKKSEFDRTFKYEIDDENW--NPTYLSDEHLEDLKGIRELRDVFDAEYSKLETD 959
Query: 940 R-QILRRVFVDGEHNWPLPVNIKRIIQNSQQTFRIDQTKPTDLTIEDVISGVRKLQEKLL 998
R Q+ + +G+ WPLPVNIKR I N+Q+TF+ID K +D+ +++ V KLQE+LL
Sbjct: 960 RFQLGTEIATNGDSTWPLPVNIKRHIWNAQKTFKIDLRKISDMHPVEIVDAVDKLQERLL 1019
Query: 999 VVRGKSDILKEAQQNAITLFCCLLRSRLATRRVIEEYRLNRQTFDWVLNNIEAQFLRSIV 1058
VV G + EAQ+NA F LLRS LA++RV+EEY+L+R+ F+WV+ IE++FL+S+V
Sbjct: 1020 VVPGDDALSVEAQKNATLFFNILLRSTLASKRVLEEYKLSREAFEWVIGEIESRFLQSLV 1079
Query: 1059 HPGEMVGVLAAQSIGEPATQMTLNTFHFAGVASKKVTSGVPRLKEILNVAKNMKTPSLTV 1118
PGEM+G +AAQSIGEPATQMTLNTFH+AGV++K VT GVPRL+EI+NVAK +KTPSL+V
Sbjct: 1080 APGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSV 1139
Query: 1119 YLDPEYAADQEKAKEIRSAIEHTTLKSVTVASEIYYDPDPRSTVIEDDEEIIQLHFSLMD 1178
YL PE + +E AK ++ A+E+TTL+SVT A+E++YDPDP ST+IE+D E ++ ++ + D
Sbjct: 1140 YLTPEASKSKEGAKTVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDFEFVRSYYEMPD 1199
Query: 1179 EETEKSLDYQSPWLLRLELDRAAMTDKDLTMGQVGEKIKETFKNDLFVIWSEDNAEKLII 1238
E+ S D SPWLLR+EL+R M DK L+M + EKI F +DL I+++DNA+KLI+
Sbjct: 1200 EDV--SPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAQKLIL 1257
Query: 1239 RCRVIRD--PKTLDADVEAEEDHMLKKIENSMLEKITLRGVEDITRVVMMKYDRKVPSET 1296
R R++ D PK D AE+D LKKIE++ML ++ LRG+ DI +V + + + E
Sbjct: 1258 RIRIMNDEGPKGELQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKQVRKSRFDEE 1317
Query: 1297 GEYHKVPEWVLETDGVNLSEVMTVSGVDGSRIYTNSFIDIMNVLGIEAGRAALYREVYNV 1356
G + EW+L+T+GVNL VM VD R +N I+I+ VLGIEA R AL E+ V
Sbjct: 1318 GGFKTSEEWMLDTEGVNLLAVMCHEDVDPKRTTSNHLIEIIEVLGIEAVRRALLDELRVV 1377
Query: 1357 IASDGSYVNYRHMALLVDVMTSQGFLMSVTRHGFNRADTGALMRCSFEETVEILFEAGAA 1416
I+ DGSYVNYRH+A+L D MT +G LM++TRHG NR DTG LMRCSFEETV+IL +A A
Sbjct: 1378 ISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILLDAAAY 1437
Query: 1417 AELDDCRGVSENVILGQMAPIGTGAFDVMIDDESLVKYMPEHKEVKTEGQEGGATP-YSN 1475
AE D RGV+EN++LGQ+APIGTG ++ ++DE L + +G E G TP S
Sbjct: 1438 AETDCLRGVTENIMLGQLAPIGTGDCELYLNDEMLKNAIELQLPSYMDGLEFGMTPARSP 1497
Query: 1476 ESGLANAEINVKDELMFSPLVE-SGGADALAGGFTAYGGADYGSATSPFSGYGNGPTSPG 1534
SG E + + SP + S +DA F+ Y G G A SP S G P+SPG
Sbjct: 1498 VSGTPYHEGMMSPNYLLSPNMRLSPMSDA---QFSPYVG---GMAFSPSSSPGYSPSSPG 1551
Query: 1535 F 1535
+
Sbjct: 1552 Y 1552
>7292659 [K] KOG0260 RNA polymerase II large subunit
Length = 1887
Score = 1508 bits (3904), Expect = 0.0
Identities = 787/1569 (50%), Positives = 1071/1569 (68%), Gaps = 54/1569 (3%)
Query: 7 SSAPLRTIKEVQFGLFSPEEVRGISVAK--IEFPETMDESQMKAKIGGLNDPRLGSIDRN 64
S APLR +K VQFG+ SP+E+R +SV + ++F ETM+ + K+GGL DPR G IDR
Sbjct: 7 SKAPLRQVKRVQFGILSPDEIRRMSVTEGGVQFAETMEGG--RPKLGGLMDPRQGVIDRT 64
Query: 65 YKCQTCGEGMAECPGHFGHIELAKPVFHIGFLSKIKKVCESVCMHCGKLLLDEYNEQMRQ 124
+CQTC M ECPGHFGHI+LAKPVFHIGF++K K+ VC +C K+L+ +N ++++
Sbjct: 65 SRCQTCAGNMTECPGHFGHIDLAKPVFHIGFITKTIKILRCVCFYCSKMLVSPHNPKIKE 124
Query: 125 AIKIK--DPKRRFNAVWTLCKAKMVCE-------TEVPSPDDPTVFLSRGGCGHIQPSIR 175
+ P++R V+ LCK K +CE T+ DP GGCGH QPSIR
Sbjct: 125 IVMKSRGQPRKRLAYVYDLCKGKTICEGGEDMDLTKENQQPDPNKKPGHGGCGHYQPSIR 184
Query: 176 KDGLSLVGTWKKDKNADDSDQPEKRIISAEEILNVFKHISPEDGWRLGFNEDFSRPEWMI 235
+ GL L WK + ++ Q +K ++SAE + + KHI+ E+ + LG + ++RP+WMI
Sbjct: 185 RTGLDLTAEWK---HQNEDSQEKKIVVSAERVWEILKHITDEECFILGMDPKYARPDWMI 241
Query: 236 LTXXXXXXXXXXXSISFNESQRGEDDLTYKLGDILKANINVQKLEINGSPQHVIQESESL 295
+T ++ + + +DDLT+KL DI+KAN ++K E +G+ HVIQE+ +
Sbjct: 242 VTVLPVPPLAVRPAVVMFGAAKNQDDLTHKLSDIIKANNELRKNEASGAAAHVIQENIKM 301
Query: 296 LQFHVATYMDNDIAGQPQAVQKSGRPIKSIRARLKGKEGRIRGNLMGKRVDFSARTVISG 355
LQFHVAT +DND+ G P+A+QKSG+P+K+I+ARLKGKEGRIRGNLMGKRVDFSARTVI+
Sbjct: 302 LQFHVATLVDNDMPGMPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITP 361
Query: 356 DPNLDLDQVGVPKSIAKTLTYPEVVTPYNIDRLTQLVRNGPNEHPGAKYVIRESGDRIDL 415
DPNL +DQVGVP+SIA+ LT+PE+VTP+NIDR+ +LVR G +++PGAKY++R++G+RIDL
Sbjct: 362 DPNLRIDQVGVPRSIAQNLTFPELVTPFNIDRMQELVRRGNSQYPGAKYIVRDNGERIDL 421
Query: 416 RYSKRAGDIQLQYGWKVERHITDNDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRLNLSVT 475
R+ ++ D+ LQ G+KVERH+ D+D V+FNRQP+LHKMSMM HRVKV+P+STFR+NLS T
Sbjct: 422 RFHPKSSDLHLQCGYKVERHLRDDDLVIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSCT 481
Query: 476 SPYNADFDGDEMNLHVPQSEETRAELSQLCAVPLQIVSPQSNKPCMGIVQDTLCGIRKMT 535
SPYNADFDGDEMNLHVPQS ETRAE+ + P QI++PQ+NKP MGIVQDTL +RKMT
Sbjct: 482 SPYNADFDGDEMNLHVPQSMETRAEVENIHITPRQIITPQANKPVMGIVQDTLTAVRKMT 541
Query: 536 LRDTFIELDQVLNMLYWIPDWDGIIPTPAILKPVPLWSGKQVLSMAIPNGIHLQRF---- 591
RD FI +QV+N+L ++P WD +P P ILKP PLW+GKQ+ S+ IP +++ R
Sbjct: 542 KRDVFITREQVMNLLMFLPTWDAKMPQPCILKPRPLWTGKQIFSLIIPGNVNMIRTHSTH 601
Query: 592 ----DDGT-TFLSPKDNGMLIIDGKIIFGVVDKKTVGSSSGGLIHVVTREKGPEICARLF 646
D+G ++SP D +++ G++I G++ KK++G+S+G L+H+ E G +I R +
Sbjct: 602 PDEEDEGPYKWISPGDTKVMVEHGELIMGILCKKSLGTSAGSLLHICFLELGHDIAGRFY 661
Query: 647 SNIQKVVNYWLLHNGFSIGIGDTIADEKTMREITEAIAVAKKKVEDVTKEAQANLLTAKH 706
NIQ V+N WLL G SIGIGDTIAD +T EI +AI AK V +V ++A L
Sbjct: 662 GNIQTVINNWLLFEGHSIGIGDTIADPQTYNEIQQAIKKAKDDVINVIQKAHNMELEPTP 721
Query: 707 GMTLRESFEDNVVRYLNEARDKAGRSAEVNLKDLNNVKQMVSAGSKGSFINIAQMSACVG 766
G TLR++FE+ V R LN+ARDK G SA+ +L + NN+K MV +GSKGS INI+Q+ ACVG
Sbjct: 722 GNTLRQTFENKVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVG 781
Query: 767 QQSVEGKRIAFGFADRTLPHFSKDDYSPESKGFVENSYLRGLTPQEFFFHAMGGREGLID 826
QQ+VEGKRI +GF RTLPHF KDDY PES+GFVENSYL GLTP EF+FHAMGGREGLID
Sbjct: 782 QQNVEGKRIPYGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLID 841
Query: 827 TAVKTAETGYIQRRLVKALEDIMVHYDGTTRNSLGNVIQFIYGEDGMDAAHIEKQSIDTI 886
TAVKTAETGYIQRRL+KA+E +MV+YDGT RNS+G +IQ YGEDG+ +E Q++ T+
Sbjct: 842 TAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSVGQLIQLRYGEDGLCGELVEFQNMPTV 901
Query: 887 PGSDSAFERRYRIDLLNEEYALDPSLLESGSEIIGDSKLQLLLNDEYKQLVDDRQILRRV 946
S+ +FE+R++ D NE + E+ S+ L E+ +LV DR LR++
Sbjct: 902 KLSNKSFEKRFKFDWSNERLMKKVFTDDVIKEMTDSSEAIQELEAEWDRLVSDRDSLRQI 961
Query: 947 FVDGEHNWPLPVNIKRIIQNSQQTFRIDQTKPTDLTIEDVISGVRKLQEKLLVVRGKSDI 1006
F +GE LP N++R+I N Q+ F I++ PTDL+ VI GV+ L E+ ++V G I
Sbjct: 962 FPNGESKVVLPCNLQRMIWNVQKIFHINKRLPTDLSPIRVIKGVKTLLERCVIVTGNDRI 1021
Query: 1007 LKEAQQNAITLFCCLLRSRLATRRVIEEYRLNRQTFDWVLNNIEAQFLRSIVHPGEMVGV 1066
K+A +NA LF CL+RS L T+ V EE+RL+ + F+W++ IE +F ++ +PGEMVG
Sbjct: 1022 SKQANENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEWLVGEIETRFQQAQANPGEMVGA 1081
Query: 1067 LAAQSIGEPATQMTLNTFHFAGVASKKVTSGVPRLKEILNVAKNMKTPSLTVYLDPEYAA 1126
LAAQS+GEPATQMTLNTFHFAGV+SK VT GVPRLKEI+N++K K PSLTV+L A
Sbjct: 1082 LAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGGAAR 1141
Query: 1127 DQEKAKEIRSAIEHTTLKSVTVASEIYYDPDPRSTVIEDDEEIIQLHFSLMDEETEKSLD 1186
D EKAK + +EHTTL+ VT + IYYDPDP+ TVI +D+E + +++ + D + +
Sbjct: 1142 DAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQRTVISEDQEFVNVYYEMPDFDPTRI-- 1199
Query: 1187 YQSPWLLRLELDRAAMTDKDLTMGQVGEKIKETFKNDLFVIWSEDNAEKLIIRCRVIRDP 1246
SPWLLR+ELDR MTDK LTM Q+ EKI F DL I+++DNA+KL++R R++ +
Sbjct: 1200 --SPWLLRIELDRKRMTDKKLTMEQIAEKINVGFGEDLNCIFNDDNADKLVLRIRIMNNE 1257
Query: 1247 KTLDADVE-----AEEDHMLKKIENSMLEKITLRGVEDITRVVMM-----KYDRKVPSET 1296
+ D + E+D L+ IE +ML +TL+G+E I +V M R V +ET
Sbjct: 1258 ENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIVITET 1317
Query: 1297 GEYHKVPEWVLETDGVNLSEVMTVSGVDGSRIYTNSFIDIMNVLGIEAGRAALYREVYNV 1356
GE+ + EW+LETDG ++ +V++ VD R +N +I VLGIEA R ++ +E+ V
Sbjct: 1318 GEFKAIGEWLLETDGTSMMKVLSERDVDPIRTSSNDICEIFQVLGIEAVRKSVEKEMNAV 1377
Query: 1357 IASDGSYVNYRHMALLVDVMTSQGFLMSVTRHGFNRADTGALMRCSFEETVEILFEAGAA 1416
+ G YVNYRH+ALL DVMT++G LM++TRHG NR DTGALMRCSFEETV++L +A A
Sbjct: 1378 LQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAH 1437
Query: 1417 AELDDCRGVSENVILGQMAPIGTGAFDVMIDDESLVKYMPEHKEVKTEGQEGGATPYSNE 1476
AE D RGVSEN+I+GQ+ +GTG FD+++D E ++ E GGA +
Sbjct: 1438 AETDPMRGVSENIIMGQLPKMGTGCFDLLLDAEK-CRFGIEIPNTLGNSMLGGAAMFIGG 1496
Query: 1477 SGLANAE------INVKDELMFSPLVESGGADALAGGFTAY--GGADYGSATSPF---SG 1525
+ N FSP G A+ G ++ A S SP +
Sbjct: 1497 GSTPSMTPPMTPWANCNTPRYFSP---PGHVSAMTPGGPSFSPSAASDASGMSPSWSPAH 1553
Query: 1526 YGNGPTSPG 1534
G+ P+SPG
Sbjct: 1554 PGSSPSSPG 1562
>CE28300 [K] KOG0260 RNA polymerase II large subunit
Length = 1852
Score = 1506 bits (3900), Expect = 0.0
Identities = 792/1566 (50%), Positives = 1066/1566 (67%), Gaps = 50/1566 (3%)
Query: 2 VDFPYSSAPLRTIKEVQFGLFSPEEVRGISVAKIEFPETMDESQMKAKIGGLNDPRLGSI 61
VDF APLR + VQFG+ PEE++ +SVA +EFPE + K K+GGL DPR G I
Sbjct: 6 VDF---QAPLRIVSRVQFGILGPEEIKRMSVAHVEFPEVYENG--KPKLGGLMDPRQGVI 60
Query: 62 DRNYKCQTCGEGMAECPGHFGHIELAKPVFHIGFLSKIKKVCESVCMHCGKLLLDEYNEQ 121
DR +C TC + +CPGHFGH+ELAKPVFHIGFL+K K+ VC +CG+LL+D+ +
Sbjct: 61 DRRGRCMTCAGNLTDCPGHFGHLELAKPVFHIGFLTKTLKILRCVCFYCGRLLIDKSAPR 120
Query: 122 MRQAIKIK--DPKRRFNAVWTLCKAKMVCE----TEVPSPDDPTVFLS-----RGGCGHI 170
+ + +K + K+R ++ LCKAK VCE E PDDP ++ GGCG
Sbjct: 121 VLEILKKTGTNSKKRLTMIYDLCKAKSVCEGAAEKEEGMPDDPDDPMNDGKKVAGGCGRY 180
Query: 171 QPSIRKDGLSLVGTWKKDKNADDSDQPEKRIISAEEILNVFKHISPEDGWRLGFNEDFSR 230
QPS R+ G+ + WKK+ N D Q K +++AE +L VF+ I+ ED +G + F+R
Sbjct: 181 QPSYRRVGIDINAEWKKNVNEDT--QERKIMLTAERVLEVFQQITDEDILVIGMDPQFAR 238
Query: 231 PEWMILTXXXXXXXXXXXSISFNESQRGEDDLTYKLGDILKANINVQKLEINGSPQHVIQ 290
PEWMI T ++ S + +DDLT+KL DI+K N +Q+ E NG+ HV+
Sbjct: 239 PEWMICTVLPVPPLAVRPAVVTFGSAKNQDDLTHKLSDIIKTNQQLQRNEANGAAAHVLT 298
Query: 291 ESESLLQFHVATYMDNDIAGQPQAVQKSGRPIKSIRARLKGKEGRIRGNLMGKRVDFSAR 350
+ LLQFHVAT +DN I G P A QK GRP+KSI+ RLKGKEGRIRGNLMGKRVDFSAR
Sbjct: 299 DDVRLLQFHVATLVDNCIPGLPTATQKGGRPLKSIKQRLKGKEGRIRGNLMGKRVDFSAR 358
Query: 351 TVISGDPNLDLDQVGVPKSIAKTLTYPEVVTPYNIDRLTQLVRNGPNEHPGAKYVIRESG 410
TVI+ DPNL +D VGVP++IA+ LT+PE+VTP+N+D+L +LV G ++PGAK E+G
Sbjct: 359 TVITADPNLPIDTVGVPRTIAQNLTFPEIVTPFNVDKLQELVNRGDTQYPGAK----ENG 414
Query: 411 DRIDLRYSKRAGDIQLQYGWKVERHITDNDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRL 470
R+DLRY RA D+ LQ G++VERH+ D D ++FNRQP+LHKMSMM HRVK++P+STFR+
Sbjct: 415 ARVDLRYHPRAADLHLQPGYRVERHMKDGDIIVFNRQPTLHKMSMMGHRVKILPWSTFRM 474
Query: 471 NLSVTSPYNADFDGDEMNLHVPQSEETRAELSQLCAVPLQIVSPQSNKPCMGIVQDTLCG 530
NLSVTSPYNADFDGDEMNLH+PQS ETRAE+ ++ VP Q+++PQ+NKP MGIVQDTLC
Sbjct: 475 NLSVTSPYNADFDGDEMNLHLPQSLETRAEIEEIAMVPRQLITPQANKPVMGIVQDTLCA 534
Query: 531 IRKMTLRDTFIELDQVLNMLYWIPDWDGIIPTPAILKPVPLWSGKQVLSMAIPNGIHLQR 590
+R MT RD FI+ ++++L ++P WDG +P PAILKP PLW+GKQV S+ IP +++ R
Sbjct: 535 VRMMTKRDVFIDWPFMMDLLMYLPTWDGKVPQPAILKPKPLWTGKQVFSLIIPGNVNVLR 594
Query: 591 F--------DDGT-TFLSPKDNGMLIIDGKIIFGVVDKKTVGSSSGGLIHVVTREKGPEI 641
D G ++SP D ++I G+++ G+V KTVG S+G L+HVVT E G EI
Sbjct: 595 THSTHPDSEDSGPYKWISPGDTKVIIEHGELLSGIVCSKTVGKSAGNLLHVVTLELGYEI 654
Query: 642 CARLFSNIQKVVNYWLLHNGFSIGIGDTIADEKTMREITEAIAVAKKKVEDVTKEAQANL 701
A +S+IQ V+N WL+ G +IGIGDTIAD+ T +I I AK+ V DV ++A +
Sbjct: 655 AANFYSHIQTVINAWLIREGHTIGIGDTIADQATYLDIQNTIRKAKQDVVDVIEKAHNDD 714
Query: 702 LTAKHGMTLRESFEDNVVRYLNEARDKAGRSAEVNLKDLNNVKQMVSAGSKGSFINIAQM 761
L G TLR++FE+ V + LN+ARD+ G SA+ +L + NN K MV +GSKGS INI+Q+
Sbjct: 715 LEPTPGNTLRQTFENKVNQILNDARDRTGSSAQKSLSEFNNFKSMVVSGSKGSKINISQV 774
Query: 762 SACVGQQSVEGKRIAFGFADRTLPHFSKDDYSPESKGFVENSYLRGLTPQEFFFHAMGGR 821
ACVGQQ+VEGKRI FGF RTLPHF KDDY PESKGFVENSYL GLTP EFFFHAMGGR
Sbjct: 775 IACVGQQNVEGKRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPSEFFFHAMGGR 834
Query: 822 EGLIDTAVKTAETGYIQRRLVKALEDIMVHYDGTTRNSLGNVIQFIYGEDGMDAAHIEKQ 881
EGLIDTAVKTAETGYIQRRL+KA+E +MV+YDGT RNSL ++Q YGEDG+D +E Q
Sbjct: 835 EGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSLAQMVQLRYGEDGLDGMWVENQ 894
Query: 882 SIDTIPGSDSAFERRYRIDLLNEEYALDPSLLESGSEIIGDSKLQLLLNDEYKQLVDDRQ 941
++ T+ +++ FER +R+DL + ++ + EI L+ E+ QL +DR+
Sbjct: 895 NMPTMKPNNAVFERDFRMDLTDNKFLRKNYSEDVVREIQESEDGISLVESEWSQLEEDRR 954
Query: 942 ILRRVFVDGEHNWPLPVNIKRIIQNSQQTFRIDQTKPTDLTIEDVISGVRKLQEKLLVVR 1001
+LR++F G+ LP N++R+I N+Q+ F++D KP +L+ VISGVR+L +KL++V
Sbjct: 955 LLRKIFPRGDAKIVLPCNLQRLIWNAQKIFKVDLRKPVNLSPLHVISGVRELSKKLIIVS 1014
Query: 1002 GKSDILKEAQQNAITLFCCLLRSRLATRRVIEEYRLNRQTFDWVLNNIEAQFLRSIVHPG 1061
G +I K+AQ NA L LLRS L T+ + + +LN + FDW+L IE++F ++I PG
Sbjct: 1015 GNDEISKQAQYNATLLMNILLRSTLCTKNMCTKSKLNSEAFDWLLGEIESRFQQAIAQPG 1074
Query: 1062 EMVGVLAAQSIGEPATQMTLNTFHFAGVASKKVTSGVPRLKEILNVAKNMKTPSLTVYLD 1121
EMVG LAAQS+GEPATQMTLNTFH+AGV++K VT GVPRLKEI+NV+K +KTPSLTV+L
Sbjct: 1075 EMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKTLKTPSLTVFLT 1134
Query: 1122 PEYAADQEKAKEIRSAIEHTTLKSVTVASEIYYDPDPRSTVIEDDEEIIQLHFSLMDEET 1181
A D EKAK++ +EHTTLK VT + IYYDPDP++TVI +DEE + + + + D +
Sbjct: 1135 GAAAKDPEKAKDVLCKLEHTTLKKVTCNTAIYYDPDPKNTVIAEDEEWVSIFYEMPDHDL 1194
Query: 1182 EKSLDYQSPWLLRLELDRAAMTDKDLTMGQVGEKIKETFKNDLFVIWSEDNAEKLIIRCR 1241
++ SPWLLR+ELDR M DK LTM + ++I F ND+ I+++DNAEKL+ R R
Sbjct: 1195 SRT----SPWLLRIELDRKRMVDKKLTMEMIADRIHGGFGNDVHTIYTDDNAEKLVFRLR 1250
Query: 1242 VIRDPKTLDADVEA---EEDHMLKKIENSMLEKITLRGVEDITRVVMMKYD-----RKVP 1293
+ + K + + E+D L+ IE +ML +TL+G+ I++V M + + R +
Sbjct: 1251 IAGEDKGEAQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKKRIII 1310
Query: 1294 SETGEYHKVPEWVLETDGVNLSEVMTVSGVDGSRIYTNSFIDIMNVLGIEAGRAALYREV 1353
+ G + V +W+LETDG L V++ +D R +N +I VLGIEA R A+ RE+
Sbjct: 1311 TPEGGFKSVADWILETDGTALLRVLSERQIDPVRTTSNDICEIFEVLGIEAVRKAIEREM 1370
Query: 1354 YNVIASDGSYVNYRHMALLVDVMTSQGFLMSVTRHGFNRADTGALMRCSFEETVEILFEA 1413
NVI+ DGSYVNYRH+ALL DVMT++G LM++TRHG NR + GALMRCSFEETV+IL EA
Sbjct: 1371 DNVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINRQEVGALMRCSFEETVDILMEA 1430
Query: 1414 GAAAELDDCRGVSENVILGQMAPIGTGAFDVMIDDESLVKYMPEHKEVKTEGQEGGA--- 1470
AE D +GVSEN++LGQ+A GTG FD+++D E M + V G G+
Sbjct: 1431 AVHAEEDPVKGVSENIMLGQLARCGTGCFDLVLDVEKCKYGMEIPQNVVMGGGFYGSFAG 1490
Query: 1471 TPYSNESGLANAEIN--VKDELMFSPLVESGGADALAGGFTAYGGADYGSATSPFSGYGN 1528
+P + E A++ N V + + G + GF+ G D G+ SPF+ G
Sbjct: 1491 SPSNREFSPAHSPWNSGVTPTYAGAAWSPTTGGMSPGAGFSPAGNTDGGA--SPFNEGGW 1548
Query: 1529 GPTSPG 1534
P SPG
Sbjct: 1549 SPASPG 1554
>Hs4505939 [K] KOG0260 RNA polymerase II large subunit
Length = 1970
Score = 1504 bits (3894), Expect = 0.0
Identities = 800/1582 (50%), Positives = 1081/1582 (67%), Gaps = 67/1582 (4%)
Query: 7 SSAPLRTIKEVQFGLFSPEEVRGISVAK--IEFPETMDESQMKAKIGGLNDPRLGSIDRN 64
S+ PLRTIK VQFG+ SP+E++ +SV + I++PET + + K+GGL DPR G I+R
Sbjct: 11 SACPLRTIKRVQFGVLSPDELKRMSVTEGGIKYPETTEGG--RPKLGGLMDPRQGVIERT 68
Query: 65 YKCQTCGEGMAECPGHFGHIELAKPVFHIGFLSKIKKVCESVCMHCGKLLLDEYNEQMRQ 124
+CQTC M ECPGHFGHIELAKPVFH+GFL K KV VC C KLL+D N +++
Sbjct: 69 GRCQTCAGNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKD 128
Query: 125 AI-KIK-DPKRRFNAVWTLCKAKMVCE----------TEVPSPD-DPTVFLSRGGCGHIQ 171
+ K K PK+R V+ LCK K +CE E P D D T GGCG Q
Sbjct: 129 ILAKSKGQPKKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPEGDEDLTKEKGHGGCGRYQ 188
Query: 172 PSIRKDGLSLVGTWKKDKNADDSDQPEKRIISAEEILNVFKHISPEDGWRLGFNEDFSRP 231
P IR+ GL L WK + ++ Q +K ++S E + +FK IS E+ + LG ++RP
Sbjct: 189 PRIRRSGLELYAEWK---HVNEDSQEKKILLSPERVHEIFKRISDEECFVLGMEPRYARP 245
Query: 232 EWMILTXXXXXXXXXXXSISFNESQRGEDDLTYKLGDILKANINVQKLEINGSPQHVIQE 291
EWMI+T ++ S R +DDLT+KL DI+K N +++ E NG+ HVI E
Sbjct: 246 EWMIVTVLPVPPLSVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQNGAAAHVIAE 305
Query: 292 SESLLQFHVATYMDNDIAGQPQAVQKSGRPIKSIRARLKGKEGRIRGNLMGKRVDFSART 351
LLQFHVAT +DN++ G P+A+QKSGRP+KS++ RLKGKEGR+RGNLMGKRVDFSART
Sbjct: 306 DVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFSART 365
Query: 352 VISGDPNLDLDQVGVPKSIAKTLTYPEVVTPYNIDRLTQLVRNGPNEHPGAKYVIRESGD 411
VI+ DPNL +DQVGVP+SIA +T+ E+VTP+NIDRL +LVR G +++PGAKY+IR++GD
Sbjct: 366 VITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYIIRDNGD 425
Query: 412 RIDLRYSKRAGDIQLQYGWKVERHITDNDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRLN 471
RIDLR+ + D+ LQ G+KVERH+ D D V+FNRQP+LHKMSMM HRV+++P+STFRLN
Sbjct: 426 RIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLN 485
Query: 472 LSVTSPYNADFDGDEMNLHVPQSEETRAELSQLCAVPLQIVSPQSNKPCMGIVQDTLCGI 531
LSVT+PYNADFDGDEMNLH+PQS ETRAE+ +L VP IV+PQSN+P MGIVQDTL +
Sbjct: 486 LSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAV 545
Query: 532 RKMTLRDTFIELDQVLNMLYWIPDWDGIIPTPAILKPVPLWSGKQVLSMAIPNGI----- 586
RK T RD F+E +V+N+L ++ WDG +P PAILKP PLW+GKQ+ S+ IP I
Sbjct: 546 RKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIIPGHINCIRT 605
Query: 587 HLQRFDDGTT----FLSPKDNGMLIIDGKIIFGVVDKKTVGSSSGGLIHVVTREKGPEIC 642
H DD + +SP D +++ +G++I G++ KK++G+S+G L+H+ E G +I
Sbjct: 606 HSTHPDDEDSGPYKHISPGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDIT 665
Query: 643 ARLFSNIQKVVNYWLLHNGFSIGIGDTIADEKTMREITEAIAVAKKKVEDVTKEAQANLL 702
+SNIQ V+N WLL G +IGIGD+IAD KT ++I I AK+ V +V ++A N L
Sbjct: 666 RLFYSNIQTVINNWLLIEGHTIGIGDSIADSKTYQDIQNTIKKAKQDVIEVIEKAHNNEL 725
Query: 703 TAKHGMTLRESFEDNVVRYLNEARDKAGRSAEVNLKDLNNVKQMVSAGSKGSFINIAQMS 762
G TLR++FE+ V R LN+ARDK G SA+ +L + NN K MV +G+KGS INI+Q+
Sbjct: 726 EPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVI 785
Query: 763 ACVGQQSVEGKRIAFGFADRTLPHFSKDDYSPESKGFVENSYLRGLTPQEFFFHAMGGRE 822
A VGQQ+VEGKRI FGF RTLPHF KDDY PES+GFVENSYL GLTP EFFFHAMGGRE
Sbjct: 786 AVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGRE 845
Query: 823 GLIDTAVKTAETGYIQRRLVKALEDIMVHYDGTTRNSLGNVIQFIYGEDGMDAAHIEKQS 882
GLIDTAVKTAETGYIQRRL+K++E +MV YD T RNS+ V+Q YGEDG+ +E Q+
Sbjct: 846 GLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGESVEFQN 905
Query: 883 IDTIPGSDSAFERRYRIDLLNEEYALDPSLLES-GSEIIGDSKLQLLLNDEYKQLVDDRQ 941
+ T+ S+ AFE+++R D NE AL +L E +++ ++ +Q L E++++ +DR+
Sbjct: 906 LATLKPSNKAFEKKFRFDYTNER-ALRRTLQEDLVKDVLSNAHIQNELEREFERMREDRE 964
Query: 942 ILRRVFVDGEHNWPLPVNIKRIIQNSQQTFRIDQTKPTDLTIEDVISGVRKLQEKLLVVR 1001
+LR +F G+ LP N+ R+I N+Q+ F I+ P+DL V+ GV++L +KL++V
Sbjct: 965 VLRVIFPTGDSKVVLPCNLLRMIWNAQKIFHINPRLPSDLHPIKVVEGVKELSKKLVIVN 1024
Query: 1002 GKSDILKEAQQNAITLFCCLLRSRLATRRVIEEYRLNRQTFDWVLNNIEAQFLRSIVHPG 1061
G + ++AQ+NA LF LRS L +RR+ EE+RL+ + FDW+L IE++F ++I HPG
Sbjct: 1025 GDDPLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPG 1084
Query: 1062 EMVGVLAAQSIGEPATQMTLNTFHFAGVASKKVTSGVPRLKEILNVAKNMKTPSLTVYLD 1121
EMVG LAAQS+GEPATQMTLNTFH+AGV++K VT GVPRLKE++N++K KTPSLTV+L
Sbjct: 1085 EMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVFLL 1144
Query: 1122 PEYAADQEKAKEIRSAIEHTTLKSVTVASEIYYDPDPRSTVIEDDEEIIQLHFSLMDEET 1181
+ A D E+AK+I +EHTTL+ VT + IYYDP+P+STV+ +D+E + +++ + D +
Sbjct: 1145 GQSARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQSTVVAEDQEWVNVYYEMPDFDV 1204
Query: 1182 EKSLDYQSPWLLRLELDRAAMTDKDLTMGQVGEKIKETFKNDLFVIWSEDNAEKLIIRCR 1241
+ SPWLLR+ELDR MTD+ LTM Q+ EKI F +DL I+++DNAEKL++R R
Sbjct: 1205 ARI----SPWLLRVELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIR 1260
Query: 1242 VIR-DPKTLDADVEA----EEDHMLKKIENSMLEKITLRGVEDITRVVM--MKYDRK--- 1291
++ D + + E ++D L+ IE++ML +TL+G+E I++V M + D K
Sbjct: 1261 IMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKI 1320
Query: 1292 VPSETGEYHKVPEWVLETDGVNLSEVMTVSGVDGSRIYTNSFIDIMNVLGIEAGRAALYR 1351
+ +E GE+ + EW+LETDGV+L V++ VD R +N ++I VLGIEA R AL R
Sbjct: 1321 IITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALER 1380
Query: 1352 EVYNVIASDGSYVNYRHMALLVDVMTSQGFLMSVTRHGFNRADTGALMRCSFEETVEILF 1411
E+Y+VI+ DGSYVNYRH+ALL D MT +G LM++TRHG NR DTG LM+CSFEETV++L
Sbjct: 1381 ELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETVDVLM 1440
Query: 1412 EAGAAAELDDCRGVSENVILGQMAPIGTGAFDVMIDDESLVKYMPEHKEVKTEGQEG--- 1468
EA A E D +GVSEN++LGQ+AP GTG FD+++D E M + G G
Sbjct: 1441 EAAAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGLGAAGPTG 1500
Query: 1469 ---GATPYSNESGLANAEINVKDEL-----MFSPLVESGGADALAGGFTAYGGAD----- 1515
G+ P S G++ A +SP V SG A GF+ +D
Sbjct: 1501 MFFGSAP-SPMGGISPAMTPWNQGATPAYGAWSPSVGSGMTPG-AAGFSPSAASDASGFS 1558
Query: 1516 --YGSATSPFSGY--GNGPTSP 1533
Y A SP G GP+SP
Sbjct: 1559 PGYSPAWSPTPGSPGSPGPSSP 1580
>ECU03g0290 [K] KOG0260 RNA polymerase II large subunit
Length = 1599
Score = 1256 bits (3249), Expect = 0.0
Identities = 709/1495 (47%), Positives = 957/1495 (63%), Gaps = 134/1495 (8%)
Query: 12 RTIKEVQFGLFSPEEVRGISVAKIEFPETMDESQMKAKIGGLNDPRLGSIDRNYKCQTCG 71
+ IK +QFGLFSP+EVR SVA I PE M+ K GGL D R+G+ DR Y CQ+CG
Sbjct: 8 KQIKSIQFGLFSPDEVRNGSVALIVHPEVMEGGVPKT--GGLIDLRMGTTDRMYLCQSCG 65
Query: 72 EGMAECPGHFGHIELAKPVFHIGFLSKIKKVCESVCMHCGKLLLDEYNEQMRQAIKIKDP 131
CPGHFGHIEL KP+FH+G++SKIKKV E VC +C K+ + K
Sbjct: 66 GDNFSCPGHFGHIELTKPMFHVGYISKIKKVLECVCFYCSKIKIPR-----------KGI 114
Query: 132 KRRFNAVWTLCKAKMVCETEVPSPDDPTVFLSRGGCGHIQPSIRKDGLSLVGTWKKDKNA 191
K + VW + K + VCE EV R GCG+ QP I+++GL+LV K +++
Sbjct: 115 KSTLSNVWGMSKGRSVCEGEVLDN-------GRSGCGNKQPVIKREGLTLVAFMKGEESN 167
Query: 192 DDSDQPEKRIISAEEILNVFKHISPEDGWRLGFNEDFSRPEWMILTXXXXXXXXXXXSIS 251
+ K +++ E + ++FK IS ED +GF+ +SRPEWMILT SI
Sbjct: 168 EG-----KVMLNGERVYSIFKKISDEDSVYMGFDLKYSRPEWMILTVLLVPPPAVRPSIV 222
Query: 252 FNESQRGEDDLTYKLGDILKANINVQKLEINGSPQHVIQESESLLQFHVATYMDNDIAGQ 311
S RGEDDLT+KL DI+K+N ++K E G+P H++++ E LLQFHVAT++DNDI G
Sbjct: 223 MEGSLRGEDDLTHKLADIIKSNGYLKKYEQEGAPGHIVRDYEQLLQFHVATFIDNDIGGL 282
Query: 312 PQAVQKSGRPIKSIRARLKGKEGRIRGNLMGKRVDFSARTVISGDPNLDLDQVGVPKSIA 371
PQA+QKSGRP+KS+ ARLKGKEGRIRGNLMGKRVDFSARTVI+ DPN+ L++VGVP IA
Sbjct: 283 PQALQKSGRPLKSLSARLKGKEGRIRGNLMGKRVDFSARTVITPDPNISLEEVGVPLEIA 342
Query: 372 KTLTYPEVVTPYNIDRLTQLVRNGPNEHPGAKYVIRESGDRIDLRYSKRAGDIQLQYGWK 431
K T+PE VT +NIDRL +LVR GPNEHPGA YV+R G +IDL +++ DI+L+ G+
Sbjct: 343 KIHTFPEKVTSFNIDRLEKLVRAGPNEHPGANYVLRSDGQKIDLNFNR--SDIRLEEGYV 400
Query: 432 VERHITDNDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHV 491
VERH+ D VLFNRQPSLHKMSMMAH +VM TFRLNLSVTSPYNADFDGDEMNLH+
Sbjct: 401 VERHMQSGDVVLFNRQPSLHKMSMMAHYARVMGNKTFRLNLSVTSPYNADFDGDEMNLHM 460
Query: 492 PQSEETRAELSQLCAVPLQIVSPQSNKPCMGIVQDTLCGIRKMTLRDTFIELDQVLNMLY 551
PQS ++AEL +L V QI+SPQSNKP MGIVQDTL G+R TLRDTF+ +V+++LY
Sbjct: 461 PQSYTSKAELEELALVSRQIISPQSNKPVMGIVQDTLTGLRLFTLRDTFLNEREVMSLLY 520
Query: 552 WI--------------------PDWD--GIIPTPAILKPVPLWSGKQVLSMAIPN----G 585
+ D+D I+ PAI KP+ LW+GKQVLS +PN G
Sbjct: 521 AVNLEFCDIPLGDAVQTGLRKGKDYDIMKILRKPAIAKPMRLWTGKQVLSFVLPNLNYIG 580
Query: 586 IHLQRFDDGTTFLSPKDNGMLIIDGKIIFGVVDKKTVGSSSGGLIHVVTREKGPEICARL 645
+ + DD + D ++I DG I GV+DKK G++ GGL+H++ + GP+ A+
Sbjct: 581 LSSEHDDDDKENIG--DTRVIIQDGYIHSGVIDKKAAGATQGGLVHIIFNDFGPKRAAQF 638
Query: 646 FSNIQKVVNYWL--LHNGFSIGIGDTIADEKTMREITEAIAVAKKKVEDVTKEAQANLLT 703
F +Q+++N ++ +H FS+GIGDTIAD KT++ + AI AK++V + + A+ N L
Sbjct: 639 FDGVQRMINAFMTGIHT-FSMGIGDTIADPKTVKVVESAIRKAKEEVSALIENARQNRLE 697
Query: 704 AKHGMTLRESFEDNVVRYLNEARDKAGRSAEVNLKDLNNVKQMVSAGSKGSFINIAQMSA 763
GMT++ESFE ++ LN ARD +G SA+ +L + NN+K MV AGSKGSFINI+Q++A
Sbjct: 698 RLPGMTMKESFESHLNLVLNRARDVSGTSAQRSLSENNNMKTMVLAGSKGSFINISQVTA 757
Query: 764 CVGQQSVEGKRIAFGFADRTLPHFSKDDYSPESKGFVENSYLRGLTPQEFFFHAMGGREG 823
CVGQQ+VEGKRI FGF+ RTLPHF KDDY+ +S+GFVENSYL GL P+EFFFHAMGGREG
Sbjct: 758 CVGQQNVEGKRIPFGFSHRTLPHFVKDDYTGKSRGFVENSYLTGLDPEEFFFHAMGGREG 817
Query: 824 LIDTAVKTAETGYIQRRLVKALEDIMVHYDGTTRNSLGNVIQFIYGEDGMDAAHIEKQSI 883
LIDTA+KTAETGYIQRRLVKALED +V D + R+ G V Q YGEDG DA +E Q +
Sbjct: 818 LIDTAIKTAETGYIQRRLVKALEDAIVRQDESVRSGNGLVYQIKYGEDGFDATFLESQKV 877
Query: 884 DTIPGSDSAFERRYRIDLLNEEYALDPSLLESGSEIIG----DSKLQLLLNDEYKQLV-- 937
D F +RY ID+ E L+ + E+ G D LQ LL+ EY+ LV
Sbjct: 878 DV-----KNFTKRYYIDMFGTE-ELEIKHGQVSEEVYGMLSSDVDLQKLLDQEYEWLVGE 931
Query: 938 --DDRQILRRVFVDGEHNWPL----------PVNIKRIIQNSQQTFRIDQTKPTDLTIED 985
+ IL VD E ++ + P N RI+ +++TF L+ D
Sbjct: 932 IFEGPPILSVGEVDIERDYKVRDIYQSAVMSPCNFTRILATAKRTFH--------LSTGD 983
Query: 986 VISGVRKLQEKLLVVRGKSDILKEAQQNAIT---LFCCLLRSRLATRRVIEEYRLNRQTF 1042
V + EA ++ T + L+R+ L+ +RV+ E+RLN + F
Sbjct: 984 V----------------SPYYILEAHKHLTTSNRILNVLIRTNLSVKRVLLEHRLNTEAF 1027
Query: 1043 DWVLNNIEAQFLRSIVHPGEMVGVLAAQSIGEPATQMTLNTFHFAGVASKKVTSGVPRLK 1102
+WV+ I+A+ L++ + P EMVG LAAQS+GEPATQMTLNTFH AGVAS VT GVPRLK
Sbjct: 1028 NWVVEVIDAKILKAKITPNEMVGTLAAQSVGEPATQMTLNTFHLAGVAS-TVTMGVPRLK 1086
Query: 1103 EILNVAKNMKTPSLTVYLDPEYAADQEKAKEIRSAIEHTTLKSVTVASEIYYDPDPRSTV 1162
EI NV KN+KTPS+ +YLD E+ E AK I++ IE T+K + + SEIYYDP+ T
Sbjct: 1087 EIFNVTKNLKTPSMKIYLDREHGKSIEAAKTIQNEIECLTVKDLCLFSEIYYDPEITGTE 1146
Query: 1163 IEDDEEIIQLHFSLMDEETEKSLDYQSPWLLRLELDRAAMTDKDLTMGQVGEKIKETFKN 1222
I DD++ ++ +F DE+ + S SP+L+RL +DRA + + + + V I++
Sbjct: 1147 ISDDKDFVEAYFEFPDEDVDFSC--LSPFLMRLVVDRAKLVGRGINLEYVAMFIRKELGG 1204
Query: 1223 DLFVIWSEDNAEKLIIRCRVIRDPKTLDADVEAEEDHMLKKIENSMLEKITLRGVEDITR 1282
VI S++NA +++R R + E E + NS+L ++ L G +++ +
Sbjct: 1205 GAHVICSDENAVNMVVRVRTTKS--------EDESLNFYTTALNSLL-RLQLGGYKNVKK 1255
Query: 1283 VVMMK-YDRKVPSETGEYHKVPEWVLETDGVNLSEVMTVSGVDGSRIYTNSFIDIMNVLG 1341
V + + DRK EW L+TDG+ LS+++ V+ +N ++I LG
Sbjct: 1256 VYISEDKDRK------------EWYLQTDGICLSQILGNPAVNSRLTISNDLVEIAETLG 1303
Query: 1342 IEAGRAALYREVYNVIASDGSYVNYRHMALLVDVMTSQGFLMSVTRHGFNRADTGALMRC 1401
IEA R ++ RE+ VI +GSYVNYRHM+LL DVMT +G+L +TRHG N+ GAL R
Sbjct: 1304 IEAARESILRELTIVIDGNGSYVNYRHMSLLADVMTMRGYLCGITRHGVNKVGAGALKRS 1363
Query: 1402 SFEETVEILFEAGAAAELDDCRGVSENVILGQMAPIGTGAFDVMIDDESLVKYMP 1456
SFEETVEIL +A +E + CRG++EN+++GQ+AP+GTG ++M+D + L K +P
Sbjct: 1364 SFEETVEILLDAALVSEKNICRGITENIMMGQLAPMGTGNIEIMLDMKKLDKAIP 1418
>SPBC651.08c [K] KOG0261 RNA polymerase III large subunit
Length = 1405
Score = 725 bits (1871), Expect = 0.0
Identities = 505/1508 (33%), Positives = 756/1508 (49%), Gaps = 191/1508 (12%)
Query: 12 RTIKEVQFGLFSPEEVRGISVAKIEFPETMDESQMKAKIGGLNDPRLGSIDRNYKCQTCG 71
+ IK +QFG+ PEE ++ + + G D +G+ ++ C TCG
Sbjct: 11 KRIKHLQFGINGPEEFVKDGTVEVSRRDLYTMTDRSPAEHGALDLHMGTSNKQINCATCG 70
Query: 72 EGMAECPGHFGHIELAKPVFHIGFLSKIKKVCESVCMHCGKLLLDEYNEQMRQAIKIK-- 129
E MA+C GHFG+++LA PVFHIG+ + +++C C +LL + ++ RQ +K
Sbjct: 71 ESMADCMGHFGYVKLALPVFHIGYFKATLTILQNICKDCSSVLLSD--QEKRQFLKDLRR 128
Query: 130 ---DPKRRFNAVWTL---CKAKMVCETEVPSPDDPTVFLSRGGCGHIQPSIRKDG-LSLV 182
D RR + CK C C +Q ++K G L ++
Sbjct: 129 PGIDNLRRSQICKRINDHCKKMRRCSK----------------CDAMQGVVKKAGPLKII 172
Query: 183 GTWKK--DKNADDSDQ------------PEKRI--------ISAEEILNVFKHISPEDGW 220
+ K+ DD + PE ++ ++ ++LN+FK I+P D
Sbjct: 173 HERFRYVRKSQDDEENFRHSFDEALKTIPELKMHLSKAHDDLNPLKVLNLFKQITPVDCE 232
Query: 221 RLGFNEDFSRPEWMILTXXXXXXXXXXXSISFNESQRGEDDLTYKLGDILKANINVQKLE 280
LG + + RPE ++ S++ E EDDLT K+ +I+ + ++
Sbjct: 233 LLGMDPEHGRPENLLWRYVPAPPVCIRPSVA-QEGATTEDDLTVKITEIIWTSSLIRAAL 291
Query: 281 INGSPQHVIQESESLLQFHVATYMDNDIAGQPQAVQKSGRPIKSIRARLKGKEGRIRGNL 340
G+P + E +Q +A Y+++++ G + S +PI+ RLKGK+GR RGNL
Sbjct: 292 SKGTPISNLMEQWEFMQLSIAMYINSEMPGLRPSDMPS-KPIRGFCQRLKGKQGRFRGNL 350
Query: 341 MGKRVDFSARTVISGDPNLDLDQVGVPKSIAKTLTYPEVVTPYNIDRLTQLVRNGPNEHP 400
GKRVDFS RTVIS DPNL +DQV VP IAK LT+PE VT N L +RNGP+ HP
Sbjct: 351 SGKRVDFSGRTVISPDPNLRIDQVAVPYRIAKILTFPERVTTQNKKHLQDCIRNGPDVHP 410
Query: 401 GAKYVI-RESGDRIDLRYSKR---AGDIQLQYGWKVERHITDNDPVLFNRQPSLHKMSMM 456
GA YVI RESG + LR+ R A D+++ G VERH+ DND VLFNRQPSLHK+S+M
Sbjct: 411 GANYVIDRESGFKRFLRFGNRNRIADDLKI--GDIVERHLHDNDVVLFNRQPSLHKLSIM 468
Query: 457 AHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAELSQLCAVPLQIVSPQS 516
AH VKV P+ T R N V PYNADFDGDEMNLHVPQ+EE + E +L + +VSP++
Sbjct: 469 AHLVKVRPWRTLRFNECVCGPYNADFDGDEMNLHVPQTEEAKTEALELMGIKNNLVSPRN 528
Query: 517 NKPCMGIVQDTLCGIRKMTLRDTFIELDQVLNMLYWIPDWDGII--PTPAILKPVPLWSG 574
+P + QD + ++L+DTF++ + N+ ++ D I P PAI+KP LW+G
Sbjct: 529 GEPIIAATQDFITAAYLLSLKDTFLDRKSISNICCYMMDASTHIDLPPPAIIKPRCLWTG 588
Query: 575 KQVLSMAI-PNGIH------------LQRFDDGTTFLSPKDNGMLIIDGKIIFGVVDKKT 621
KQV ++ + PN R T + PKD ++I + +II GVVDK
Sbjct: 589 KQVFTVLMKPNRFSKVLVNLDAKTRSFSRIKSKTPEMCPKDGYLMIRNSEIIAGVVDKSV 648
Query: 622 VGSSS-GGLIHVVTREKGPEICARLFSNIQKVVNYWLLHNGFSIGIGDTIADEKTMREIT 680
VG L +V+ R+ G A + + K+ +L + GFSIGI D + +
Sbjct: 649 VGDGKKDSLFYVILRDYGALEAAEAITRLSKMCARFLGNRGFSIGIEDVQPGKSLSSQKE 708
Query: 681 EAIAVAKKKVEDVTKEAQANLLTAKHGMTLRESFEDNVVRYLNEARDKAGRSAEVNLKDL 740
+ A +D + +L + GM + E + L++ RD G L
Sbjct: 709 ILVNKAYATSDDFIMQYAKGILECQPGMDQEATLEAKISSTLSKVRDDVGEICMDELGPA 768
Query: 741 NNVKQMVSAGSKGSFINIAQMSACVGQQSVEGKRIAFGFADRTLPHFSKDDYSPESKGFV 800
N+ M + GSKGS IN++QM ACVGQQ + GKR+ GF DR+LPHF K+ P +KGFV
Sbjct: 769 NSPLIMATCGSKGSKINVSQMVACVGQQIISGKRVPDGFQDRSLPHFHKNSKHPLAKGFV 828
Query: 801 ENSYLRGLTPQEFFFHAMGGREGLIDTAVKTAETGYIQRRLVKALEDIMVHYDGTTRNSL 860
NS+ GLTP EF FHA+ GREGL+DTAVKTAETGY+ RRL+K+LED+ YDGT R+S
Sbjct: 829 SNSFYSGLTPTEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDLSSAYDGTVRSSN 888
Query: 861 GNVIQFIYGEDGMDAAHIEKQSIDTIPGSDSAFE-RRYRIDLLNEEYALDPSLLESGSEI 919
+V+QF+YG+DG+D ++E G A E +R I +N Y S +
Sbjct: 889 SDVVQFVYGDDGLDPTYME--------GDGQAVEFKRTWIHSVNLNYDRHDSAM------ 934
Query: 920 IGDSKLQLLLNDEYKQLVDDRQILRRVFVDGEHNWPLPVNIKRIIQNSQQTFRIDQTKPT 979
L + D + +DD + L N R + +TF
Sbjct: 935 -----LPYEIIDYVNRALDDPKFL--------------TNCNRDFIETIRTF-------- 967
Query: 980 DLTIEDVISGVRKLQEKLLVVRGKSDILKEAQQNAITLFCCLLRSRLATRRVIEE-YRLN 1038
IE++ + ++E+ R + +L+E + + + +A R+ +E R+
Sbjct: 968 --VIENIAKYLASVRER----RDLAPMLEEPDMDDLDDMEGDEFAPVAKRKSVENIIRVT 1021
Query: 1039 RQTFDWVLNNIEAQFLRSIVHPGEMVGVLAAQSIGEPATQMTLNTFHFAGVASKKVTSGV 1098
+ ++ +++R+ V PG VG + AQSIGEP TQMTL TFHFAGVA+ + T GV
Sbjct: 1022 EKQLRSFVDRCWEKYMRAKVEPGTAVGAIGAQSIGEPGTQMTLKTFHFAGVAA-QTTLGV 1080
Query: 1099 PRLKEILNVAKNMKTPSLTVYLDPEYAADQEKAKEIRSAIEHTTLKSVTVASEIYYDPDP 1158
PR+KEI+N AK + TP +T L + D+ A+ ++ IE T LK VT E Y P
Sbjct: 1081 PRIKEIINAAKTISTPIITGQLIND--RDERSARVVKGRIEKTYLKDVTSYIEEVYGP-- 1136
Query: 1159 RSTVIEDDEEIIQLHFSLMDEETEKSLDYQSPWLLRLELDRAAMTDKDLTMGQVGEKIKE 1218
+ + S +++ D + D+T+ +
Sbjct: 1137 -----------VTTYLS-----------------IQVNFDTISKLQLDITLADIAA---- 1164
Query: 1219 TFKNDLFVIWSEDNAEKLIIRCRVIRDPKTL-------DADVEAEEDHMLKKIE--NSML 1269
IW N KL I + + TL +D ++ E + +++ +L
Sbjct: 1165 -------AIW---NTPKLKIPSQQVTVNNTLQQIHVHTSSDGKSSETEVYYRLQTYKRVL 1214
Query: 1270 EKITLRGVEDITRVVMMKYDRKVPSETGEYHKVPEWVLETDGVNLSEVMTVSGVDGSRIY 1329
+ + G+ I R V+ + K+ L +G L VM G+ G++
Sbjct: 1215 PDVVVAGIPTINRSVINQESGKIE-------------LFMEGTGLQAVMNTEGIVGTKTS 1261
Query: 1330 TNSFIDIMNVLGIEAGRAALYREVYNVIASDGSYVNYRHMALLVDVMTSQGFLMSVTRHG 1389
TN +++ +VLGIEA R ++ E+ +A G V+ RH+ LL DVMT +G ++ +TR G
Sbjct: 1262 TNHVMEMKDVLGIEAARYSIISEIGYTMAKHGLTVDPRHIMLLGDVMTCKGEVLGITRFG 1321
Query: 1390 FNRADTGALMRCSFEETVEILFEAGAAAELDDCRGVSENVILGQMAPIGTGAFDVMIDDE 1449
+ L SFE+T + LF A A D G+SE ++LG++APIGT F ++ E
Sbjct: 1322 VAKMKDSVLALASFEKTTDHLFNAAARFAKDSIEGISECIVLGKLAPIGTNVFQLIRRTE 1381
Query: 1450 SLVKYMPE 1457
+ P+
Sbjct: 1382 EEEEQKPK 1389
>Hs5902062 [K] KOG0261 RNA polymerase III large subunit
Length = 1391
Score = 714 bits (1842), Expect = 0.0
Identities = 488/1480 (32%), Positives = 753/1480 (49%), Gaps = 188/1480 (12%)
Query: 19 FGLFSPEEVRGISVAKIEFPETMDESQMKAKI-GGLNDPRLGSIDRNYKCQTCGEGMAEC 77
FG+ SPEE+R + ++ + A + G+ D R+G+ +++ C+TCG+ +A+C
Sbjct: 20 FGMKSPEEMRQQAHIQVVSKNLYSQDNQHAPLLYGVLDHRMGTSEKDRPCETCGKNLADC 79
Query: 78 PGHFGHIELAKPVFHIGFLSKIKKVCESVCMHCGKLLLDEYNEQM------RQAIKIKDP 131
GH+G+I+L P FH+G+ + + + +C C ++L + ++ R +
Sbjct: 80 LGHYGYIDLELPCFHVGYFRAVIGILQMICKTCCHIMLSQEEKKQFLDYLKRPGLTYLQK 139
Query: 132 KRRFNAVWTLCKAKMVCETEVPSPDDPTVFLSRGGCGHIQPSIRKDGLSLV--GTWKKDK 189
+ + C+ K +C CG +++K GL + +K +K
Sbjct: 140 RGLKKKISDKCRKKNICHH----------------CGAFNGTVKKCGLLKIIHEKYKTNK 183
Query: 190 NADD----------------SDQPEKRIISAEE------ILNVFKHISPEDGWRLGFNED 227
D + + E + A+E +LN+FK I ED L N +
Sbjct: 184 KVVDPIVSNFLQSFETAIEHNKEVEPLLGRAQENLNPLVVLNLFKRIPAEDVPLLLMNPE 243
Query: 228 FSRPEWMILTXXXXXXXXXXXSI-SFNESQRGEDDLTYKLGDILKANINVQKLEINGSPQ 286
+P +ILT S+ S +S EDDLT KL +I+ N ++K I+G+
Sbjct: 244 AGKPSDLILTRLLVPPLCFRPSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRISGAKT 303
Query: 287 HVIQESESLLQFHVATYMDNDIAGQPQAVQKSGRPIKSIRARLKGKEGRIRGNLMGKRVD 346
+I E LQ A Y++++++G P + + + RLKGK+GR RGNL GKRVD
Sbjct: 304 QMIMEDWDFLQLQCALYINSELSGIPLNMAPK-KWTRGFVQRLKGKQGRFRGNLSGKRVD 362
Query: 347 FSARTVISGDPNLDLDQVGVPKSIAKTLTYPEVVTPYNIDRLTQLVRNGPNEHPGAKYVI 406
FS RTVIS DPNL +D+V VP +AK LT+PE V NI+ L +LV+NGP HPGA ++
Sbjct: 363 FSGRTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANINFLRKLVQNGPEVHPGANFIQ 422
Query: 407 -RESGDRIDLRYSKRAGDIQ-LQYGWKVERHITDNDPVLFNRQPSLHKMSMMAHRVKVMP 464
R + + L+Y R Q L+YG VERH+ D D VLFNRQPSLHK+S+MAH +V P
Sbjct: 423 QRHTQMKRFLKYGNREKMAQELKYGDIVERHLIDGDVVLFNRQPSLHKLSIMAHLARVKP 482
Query: 465 YSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAELSQLCAVPLQIVSPQSNKPCMGIV 524
+ TFR N V +PYNADFDGDEMNLH+PQ+EE +AE L +V+P++ +P + +
Sbjct: 483 HRTFRFNECVCTPYNADFDGDEMNLHLPQTEEAKAEALVLMGTKANLVTPRNGEPLIAAI 542
Query: 525 QDTLCGIRKMTLRDTFIELDQVLNMLYWI-----PDWDGIIPTPAILKPVPLWSGKQVLS 579
QD L G +TL+DTF + + ++ I +P P ILKPV LW+GKQ+ S
Sbjct: 543 QDFLTGAYLLTLKDTFFDRAKACQIIASILVGKDEKIKVRLPPPTILKPVTLWTGKQIFS 602
Query: 580 MAI----PNGIHLQRFDDGTTF------LSPKDNGMLIIDGKIIFGVVDKKTVGSSS-GG 628
+ + N + G + L D+ + I + +++ G +DK T+GS S
Sbjct: 603 VILRPSDDNPVRANLRTKGKQYCGKGEDLCANDSYVTIQNSELMSGSMDKGTLGSGSKNN 662
Query: 629 LIHVVTREKGPEICARLFSNIQKVVNYWLLHNGFSIGIGDTIADEKTMREITEAIAVAKK 688
+ +++ R+ G A S + ++ +L + GFSIGIGD + ++ E + K
Sbjct: 663 IFYILLRDWGQNEAADAMSRLARLAPVYLSNRGFSIGIGDVTPGQGLLKAKYELLNAGYK 722
Query: 689 KVEDVTKEAQANLLTAKHGMTLRESFEDNVVRYLNEARDKAGRSAEVNLKDLNNVKQMVS 748
K ++ + L + G T E+ E +++ L+ RD AG + L N+ M
Sbjct: 723 KCDEYIEALNTGKLQQQPGCTAEETLEALILKELSVIRDHAGSACLRELDKSNSPLTMAL 782
Query: 749 AGSKGSFINIAQMSACVGQQSVEGKRIAFGFADRTLPHFSKDDYSPESKGFVENSYLRGL 808
GSKGSFINI+QM ACVGQQ++ G R+ GF +R+LPHF K P +KGFV NS+ GL
Sbjct: 783 CGSKGSFINISQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKLPAAKGFVANSFYSGL 842
Query: 809 TPQEFFFHAMGGREGLIDTAVKTAETGYIQRRLVKALEDIMVHYDGTTRNSLGNVIQFIY 868
TP EFFFH M GREGL+DTAVKTAETGY+QRRLVK+LED+ YD T R+S G++IQFIY
Sbjct: 843 TPTEFFFHTMAGREGLVDTAVKTAETGYMQRRLVKSLEDLCSQYDLTVRSSTGDIIQFIY 902
Query: 869 GEDGMDAAHIEKQSIDTIPGSDSAFERRYRIDLLNEEYAL--DPSLLESGSEIIGDSKLQ 926
G DG+D A +E G D E + +D + + +P+L SK +
Sbjct: 903 GGDGLDPAAME--------GKDEPLEFKRVLDNIKAVFPCPSEPAL----------SKNE 944
Query: 927 LLLNDEYKQLVDDRQILRRVFVDGEHNWPLPVNIKRIIQNSQQTFRIDQTKPTDLTIEDV 986
L+L E I++ S+ F Q D ++++
Sbjct: 945 LILTTE-----------------------------SIMKKSE--FLCCQ----DSFLQEI 969
Query: 987 ISGVRKLQEKLLVVRGKSDILKEAQQNAITLFCCLLRSRLATRRVIEEYRLNRQTFDWVL 1046
++ + EK+ R K I N T L + T +E++ L
Sbjct: 970 KKFIKGVSEKIKKTRDKYGI----NDNGTTEPRVLYQLDRITPTQVEKF----------L 1015
Query: 1047 NNIEAQFLRSIVHPGEMVGVLAAQSIGEPATQMTLNTFHFAGVASKKVTSGVPRLKEILN 1106
+++R+ + PG VG L AQSIGEP TQMTL TFHF GVAS +T GVPR+KEI+N
Sbjct: 1016 ETCRDKYMRAQMEPGSAVGALCAQSIGEPGTQMTLKTFHFGGVASMNITLGVPRIKEIIN 1075
Query: 1107 VAKNMKTPSLTVYLDPEYAADQEKAKEIRSAIEHTTLKSVTVASEIYYDPDPRSTVIEDD 1166
+K + TP +T LD + AD A+ ++ IE T L ++ E + PD +++
Sbjct: 1076 ASKAISTPIITAQLDKDDDADY--ARLVKGRIEKTLLGEISEYIEEVFLPDDCFILVKLS 1133
Query: 1167 EEIIQLHFSLMDEETEKSLDYQSPWLLRLELDRAAMTDKDLTMGQVGEKIKETFKNDLFV 1226
E I+L ++ ET +R + + + K + GE + + V
Sbjct: 1134 LERIRLLRLEVNAET-----------VRYSICTSKLRVKPGDVAVHGEAV-------VCV 1175
Query: 1227 IWSEDNAEKLIIRCRVIRDPKTLDADVEAEEDHMLKKIENSMLEKITLRGVEDITRVVMM 1286
E++ + + +++ L K+ ++G+ +++R V+
Sbjct: 1176 TPRENSKSSMYYVLQFLKED----------------------LPKVVVQGIPEVSRAVI- 1212
Query: 1287 KYDRKVPSETGEYHKVPEWVLETDGVNLSEVMTVSGVDGSRIYTNSFIDIMNVLGIEAGR 1346
+ ++G+ ++ L +G NL VM GV G+R +N+ ++ LGIEA R
Sbjct: 1213 ----HIDEQSGK----EKYKLLVEGDNLRAVMATHGVKGTRTTSNNTYEVEKTLGIEAAR 1264
Query: 1347 AALYREV-YNVIASDGSYVNYRHMALLVDVMTSQGFLMSVTRHGFNRADTGALMRCSFEE 1405
+ E+ Y ++ + G ++ RH+ LL D+MT +G ++ +TR G + LM SFE+
Sbjct: 1265 TTIINEIQYTMVVNHGMSIDRRHVMLLSDLMTYKGEVLGITRFGLAKMKESVLMLASFEK 1324
Query: 1406 TVEILFEAGAAAELDDCRGVSENVILGQMAPIGTGAFDVM 1445
T + LF+A + D GVSE +I+G IGTG F ++
Sbjct: 1325 TADHLFDAAYFGQKDSVCGVSECIIMGIPMNIGTGLFKLL 1364
>YOR116c [K] KOG0261 RNA polymerase III large subunit
Length = 1460
Score = 708 bits (1828), Expect = 0.0
Identities = 507/1512 (33%), Positives = 771/1512 (50%), Gaps = 148/1512 (9%)
Query: 1 MVDFPYSSAPLRTIKEVQFGLFSPEEVRGISVAKIEFPETMD-ESQMKAKIGGLNDPRLG 59
M + S P R IK ++F S ++ S ++ + D E K G DP++G
Sbjct: 1 MKEVVVSETPKR-IKGLEFSALSAADIVAQSEVEVSTRDLFDLEKDRAPKANGALDPKMG 59
Query: 60 SIDRNYKCQTCGEGMAECPGHFGHIELAKPVFHIGFLSKIKKVCESVCMHCGKLLLDE-- 117
+ +C TC +A C GHFGH++LA PVFHIG+ ++ + +C +C +LL E
Sbjct: 60 VSSSSLECATCHGNLASCHGHFGHLKLALPVFHIGYFKATIQILQGICKNCSAILLSETD 119
Query: 118 ----YNEQMRQAIKIKDPKRRFNAVWTL---CKAKMVCETEVPSPDDPTVFLSRGGCGHI 170
+E R + D RR + + CK + C + V + G G
Sbjct: 120 KRQFLHELRRPGV---DNLRRMGILKKILDQCKKQRRCLH--CGALNGVVKKAAAGAGSA 174
Query: 171 QPSIRKDGLSLVGTWKKDKNADDSD------------QPE-----KRI---ISAEEILNV 210
I D VG K+A + D PE KR ++ + LN+
Sbjct: 175 ALKIIHDTFRWVGK----KSAPEKDIWVGEWKEVLAHNPELERYVKRCMDDLNPLKTLNL 230
Query: 211 FKHISPEDGWRLGFNEDF--SRPEWMILTXXXXXXXXXXXSISFNESQRG-EDDLTYKLG 267
FK I D LG + RPE I S+ +S EDDLT KL
Sbjct: 231 FKQIKSADCELLGIDATVPSGRPETYIWRYLPAPPVCIRPSVMMQDSPASNEDDLTVKLT 290
Query: 268 DILKANINVQKLEINGSPQHVIQESESLLQFHVATYMDNDIAGQPQAVQKSG-----RPI 322
+I+ + ++ G + + E LQ VA Y+++D S +PI
Sbjct: 291 EIVWTSSLIKAGLDKGISINNMMEHWDYLQLTVAMYINSDSVNPAMLPGSSNGGGKVKPI 350
Query: 323 KSIRARLKGKEGRIRGNLMGKRVDFSARTVISGDPNLDLDQVGVPKSIAKTLTYPEVVTP 382
+ RLKGK+GR RGNL GKRVDFS RTVIS DPNL +D+V VP +AK LTYPE VT
Sbjct: 351 RGFCQRLKGKQGRFRGNLSGKRVDFSGRTVISPDPNLSIDEVAVPDRVAKVLTYPEKVTR 410
Query: 383 YNIDRLTQLVRNGPNEHPGAKYVIRESGD-RIDLRYSKRAGDIQ-LQYGWKVERHITDND 440
YN +L +L+ NGPN HPGA Y+++ + D R +LRY R + LQ G VERH+ D D
Sbjct: 411 YNRHKLQELIVNGPNVHPGANYLLKRNEDARRNLRYGDRMKLAKNLQIGDVVERHLEDGD 470
Query: 441 PVLFNRQPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAE 500
VLFNRQPSLH++S+++H K+ P+ TFRLN V +PYNADFDGDEMNLHVPQ+EE RAE
Sbjct: 471 VVLFNRQPSLHRLSILSHYAKIRPWRTFRLNECVCTPYNADFDGDEMNLHVPQTEEARAE 530
Query: 501 LSQLCAVPLQIVSPQSNKPCMGIVQDTLCGIRKMTLRDTFIE---LDQVLNMLYWIPDWD 557
L V +++P+S +P + QD + G ++ +D+F + L Q+L+M+ D
Sbjct: 531 AINLMGVKNNLLTPKSGEPIIAATQDFITGSYLISHKDSFYDRATLTQLLSMMS-----D 585
Query: 558 GI----IPTPAILKPVPLWSGKQVLSMAI-PNG---IHLQRFDDGTTFLSPK-------- 601
GI IP PAI+KP LW+GKQV S+ I PN + + F+ PK
Sbjct: 586 GIEHFDIPPPAIMKPYYLWTGKQVFSLLIKPNHNSPVVINLDAKNKVFVPPKSKSLPNEM 645
Query: 602 --DNGMLIIDG-KIIFGVVDKKTVGSSSG-GLIHVVTREKGPEICARLFSNIQKVVNYWL 657
++G +II G +I+ GV+DK +G + + + R+ GP+ A + + K+ +L
Sbjct: 646 SQNDGFVIIRGSQILSGVMDKSVLGDGKKHSVFYTILRDYGPQEAANAMNRMAKLCARFL 705
Query: 658 LHNGFSIGIGDTIADEKTMREITEAIAVAKKKVEDVTKEAQANLLTAKHGMTLRESFEDN 717
+ GFSIGI D + ++ E + +A K +++ L + G ++ E
Sbjct: 706 GNRGFSIGINDVTPADDLKQKKEELVEIAYHKCDELITLFNKGELETQPGCNEEQTLEAK 765
Query: 718 VVRYLNEARDKAGRSAEVNLKDLNNVKQMVSAGSKGSFINIAQMSACVGQQSVEGKRIAF 777
+ L++ R++ G L + N M + GSKGS +N++QM A VGQQ + G R+
Sbjct: 766 IGGLLSKVREEVGDVCINELDNWNAPLIMATCGSKGSTLNVSQMVAVVGQQIISGNRVPD 825
Query: 778 GFADRTLPHFSKDDYSPESKGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTAETGYI 837
GF DR+LPHF K+ +P+SKGFV NS+ GL+P EF FHA+ GREGL+DTAVKTAETGY+
Sbjct: 826 GFQDRSLPHFPKNSKTPQSKGFVRNSFFSGLSPPEFLFHAISGREGLVDTAVKTAETGYM 885
Query: 838 QRRLVKALEDIMVHYDGTTRNSLGNVIQFIYGEDGMDAAHIEKQSIDTIPGSDSAFERRY 897
RRL+K+LED+ YD T R S ++QF YG DG+D +E + + +++ Y
Sbjct: 886 SRRLMKSLEDLSCQYDNTVRTSANGIVQFTYGGDGLDPLEMEGNAQPV--NFNRSWDHAY 943
Query: 898 RIDLLNEEYALDP-SLLESGSEIIGDSKLQLLLNDEYKQLVDDRQILRRVFVDGEHNWPL 956
I N++ L P +++E+ +EI+G + +L+ D LV + + +VD
Sbjct: 944 NITFNNQDKGLLPYAIMETANEILGPLEERLVRYDNSGCLVKREDLNKAEYVD------- 996
Query: 957 PVNIKRIIQNSQQTFRIDQTKPTDLTIEDVISGVRKLQEKLLVVRGKSDILKEAQQNAIT 1016
+ D + ++ + I+G L RG +L+ +
Sbjct: 997 ---------------QYDAERDFYHSLREYINGKATALANLRKSRGMLGLLEPPAKELQG 1041
Query: 1017 LFCCLLRSRLATRRVIEEYRLNRQTFDWVLNNIEAQFLRSIVHPGEMVGVLAAQSIGEPA 1076
+ V + YR++ ++ L ++ ++ + PG +G + AQSIGEP
Sbjct: 1042 IDPDETVPDNVKTSVSQLYRISEKSVRKFLEIALFKYRKARLEPGTAIGAIGAQSIGEPG 1101
Query: 1077 TQMTLNTFHFAGVASKKVTSGVPRLKEILNVAKNMKTPSLTVYLDPEYAADQEKAKEIRS 1136
TQMTL TFHFAGVAS VT GVPR+KEI+N +K + TP + L + D+ A+ ++
Sbjct: 1102 TQMTLKTFHFAGVASMNVTLGVPRIKEIINASKVISTPIINAVLVND--NDERAARVVKG 1159
Query: 1137 AIEHTTLKSVTVASEIYYDPDPRSTVIEDDEEIIQLHFSLMDEETEKSLDYQSPWLLRLE 1196
+E T L V +Y D V +D+ IQ+ L ++D +L+
Sbjct: 1160 RVEKTLLSDVA-----FYVQD----VYKDNLSFIQVRIDL------GTID-------KLQ 1197
Query: 1197 LDRAAMTDKDLTMGQVGEKIKETFKNDLFVIWSEDNAEKLIIRCRVIRDPKTLDADVEAE 1256
L+ +T +D+ + + +D+ +I + A + + T A +E
Sbjct: 1198 LE---LTIEDIAVAITRASKLKIQASDVNIIGKDRIAINVFPEGYKAKSIST-SAKEPSE 1253
Query: 1257 ED--HMLKKIENSMLEKITLRGVEDITR-VVMMKYDRKVPSETGEYHKVPEWVLETDGVN 1313
D + ++++ + L + ++G+ DI+R V+ ++ D K L +G
Sbjct: 1254 NDVFYRMQQLRRA-LPDVVVKGLPDISRAVINIRDDGKRE-------------LLVEGYG 1299
Query: 1314 LSEVMTVSGVDGSRIYTNSFIDIMNVLGIEAGRAALYREVYNVIASDGSYVNYRHMALLV 1373
L +VM GV GSR TN +++ +VLGIEA R ++ RE+ +++ G V+ RH+ LL
Sbjct: 1300 LRDVMCTDGVIGSRTTTNHVLEVFSVLGIEAARYSIIREINYTMSNHGMSVDPRHIQLLG 1359
Query: 1374 DVMTSQGFLMSVTRHGFNRADTGALMRCSFEETVEILFEAGAAAELDDCRGVSENVILGQ 1433
DVMT +G ++ +TR G ++ L SFE+T + LF+A + D GVSE +ILGQ
Sbjct: 1360 DVMTYKGEVLGITRFGLSKMRDSVLQLASFEKTTDHLFDAAFYMKKDAVEGVSECIILGQ 1419
Query: 1434 MAPIGTGAFDVM 1445
IGTG+F V+
Sbjct: 1420 TMSIGTGSFKVV 1431
>CE04196 [K] KOG0261 RNA polymerase III large subunit
Length = 1388
Score = 693 bits (1788), Expect = 0.0
Identities = 481/1455 (33%), Positives = 731/1455 (50%), Gaps = 187/1455 (12%)
Query: 43 ESQMKAKIGGLNDPRLGSIDRNYKCQTCGEGMAECPGHFGHIELAKPVFHIGFLSKIKKV 102
E +++ G DP++G + C TCG G+ +C GHFG+ +L PVFHIGF ++
Sbjct: 46 EGKLQPANYGPLDPKMGVSTKTGTCSTCGLGLTDCVGHFGYFDLDVPVFHIGFFKLTIQL 105
Query: 103 CESVCMHCGKLLLDEYNEQ------MRQAIKIKDPKRRFNAVWTLCKAKMVCE------- 149
+ +C +C +LL + M + K + CK C
Sbjct: 106 LQCICKNCSSILLTPEQHRVFSRQVMNPNLDYLHRKALHKRIVAACKKGSTCSHCGLKNG 165
Query: 150 --------------TEVPSPDD----PTVFLSRGGCGHIQPSIRKDGLSLVGTWKKDKNA 191
S D+ T+F S G ++ L+ + K N
Sbjct: 166 TVKKAVGAVLKIAFASPVSVDELGKFATMFSSNQEVGDHVRKMKFTLLNPLFVQKLFSNI 225
Query: 192 DDSDQPEKRIISAEEILNVFKHISPEDGWRLGFNEDFSRPEWMILTXXXXXXXXXXXSIS 251
+ D P + S EE KH P ++LT S+
Sbjct: 226 KEGDIPVLMVRSGEE-----KH-----------------PNDLLLTRMPVPPVCIRPSV- 262
Query: 252 FNESQRG--EDDLTYKLGDILKANINVQKLEINGSPQHVIQESESLLQFHVATYMDNDIA 309
+E + G EDD+T KL +I+ N ++K + +G+P + E+ LQ A Y++++++
Sbjct: 263 VSEVKAGTTEDDVTMKLMEIMLTNDVLKKHKRDGAPSKTLFETWEHLQIQCALYINSEMS 322
Query: 310 GQPQAVQKSGRPIKSIRARLKGKEGRIRGNLMGKRVDFSARTVISGDPNLDLDQVGVPKS 369
G P +Q R +++ RLKGK+GR RGNL GKRVDFS RTVIS DPNL +DQVGVP
Sbjct: 323 GLPPDMQPK-RAMRAFTQRLKGKQGRFRGNLCGKRVDFSGRTVISPDPNLRIDQVGVPIH 381
Query: 370 IAKTLTYPEVVTPYNIDRLTQLVRNGPNEHPGAKYVI-RESGDRIDLRYSKRAGDIQ-LQ 427
+A TLT+PE+V NI+++ QLV NG + HPGA Y++ +++G++ L+Y KR + L+
Sbjct: 382 VAMTLTFPEIVNASNIEKMRQLVINGSDVHPGANYLVEKKTGNKKLLKYGKRDELAKNLR 441
Query: 428 YGWKVERHITDNDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFDGDEM 487
G +ERH+ DND VLFNRQPSLHK+S+M+HR KVMP TFR N +PYNADFDGDEM
Sbjct: 442 MGDTIERHLDDNDVVLFNRQPSLHKISIMSHRAKVMPGRTFRFNECACTPYNADFDGDEM 501
Query: 488 NLHVPQSEETRAELSQLCAVPLQIVSPQSNKPCMGIVQDTLCGIRKMTLRDTFIELDQVL 547
NLH+PQ+ E +AE S+L V +++P+S +P + +QD + G +T +DTF+ +V
Sbjct: 502 NLHLPQTYEAKAEASELMNVKNNLITPRSGEPLVAAIQDFITGGYLLTHKDTFLPRAEVY 561
Query: 548 NMLYWIPDWDGI------IPTPAILKPVPLWSGKQVLSMAIP---------NGIHLQRFD 592
+ D IP PAI +PV LW+GKQ++ + I N +
Sbjct: 562 RFAAALIDASAKKQTKIRIPPPAIRRPVELWTGKQLIELIIRPDKGSDVSLNLTAKNKSY 621
Query: 593 DGTTFLSPKDNGMLIIDGKIIFGVVDKKTVGSSSG-GLIHVVTREKGPEICARLFSNIQK 651
G L KD+ ++I + ++ G +DK +GSSS + +++ R+ G + + +
Sbjct: 622 TGNLELCSKDSYVIIRNSVLLAGCLDKSLLGSSSKVNIFYMLMRDYGEDAAVDAMWRLAR 681
Query: 652 VVNYWLLHNGFSIGIGDTIADEKTMREITEAIAVAKKKVEDVTKEAQANLLTAKHGMTLR 711
+ +L + GFSIGIGD E+ +RE + + K KE + L A+ G T
Sbjct: 682 MAPVFLSNRGFSIGIGDVRPSEQLLREKGQLVDNGYSKCSQYIKELEEGKLKAQPGCTEE 741
Query: 712 ESFEDNVVRYLNEARDKAGRSAEVNLKDLNNVKQMVSAGSKGSFINIAQMSACVGQQSVE 771
E+ E ++R L+ RD AG+ NL N M GSKGSFINI+QM ACVGQQ++
Sbjct: 742 ETLESIILRELSTIRDHAGQVCLRNLSKYNAPLTMAVCGSKGSFINISQMIACVGQQAIS 801
Query: 772 GKRIAFGFADRTLPHFSKDDYSPESKGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKT 831
G R GF +R+LPHF + +PE+KGFV NS+ GLTP EFFFH MGGREGL+DTAVKT
Sbjct: 802 GHRPPDGFEERSLPHFERKKKTPEAKGFVANSFYSGLTPTEFFFHTMGGREGLVDTAVKT 861
Query: 832 AETGYIQRRLVKALEDIMVHYDGTTRNSLGNVIQFIYGEDGMDAAHIEKQSIDTIPGSDS 891
AETGY+QRRLVK LED+ YDGT R+S+G+VI+F++GEDG+D A +E + ++
Sbjct: 862 AETGYMQRRLVKCLEDLCASYDGTVRSSVGDVIEFVFGEDGLDPAMMEAKD-GSVVDFTH 920
Query: 892 AFERRYRIDLLNEEYALDPSLLESGSEIIGDSKLQLLLNDEYKQLVDD-RQILRRVFVDG 950
E I E+ P ++ E++ +++Q +Y D + + + +
Sbjct: 921 VLEHAKNIQTTKEQ----PIPVDKLDEVL-KAEIQKKFKGKYVHFADKLSEYITQTEIKK 975
Query: 951 EHNWPLPVNIKRIIQNSQQTFRIDQTKPTDLTIEDVISGVRKLQEKLLVVRGKSDILKEA 1010
W QN + +T DL ++ + L EA
Sbjct: 976 SKKW----------QNGKAHCGNHET--ADLKTKESCKICKNL---------------EA 1008
Query: 1011 QQNAITLFCCLLRSRLATRRVIEEYRLNRQTFDWVLNNIEAQFLRSIVHPGEMVGVLAAQ 1070
+ ++ CL +++L + + Y++ R+I P
Sbjct: 1009 YKTSLLANSCLTKTQLCSFIELCYYKV----------------ARAITEP---------- 1042
Query: 1071 SIGEPATQMTLNTFHFAGVASKKVTSGVPRLKEILNVAKNMKTPSLTVYLDPEYAADQEK 1130
GEP+TQMTL TFHFAGVAS +T GVPR+KEI+N K + TP +T L Y D+
Sbjct: 1043 --GEPSTQMTLKTFHFAGVASMNITQGVPRIKEIINAVKTISTPIITAALLDPY--DESL 1098
Query: 1131 AKEIRSAIEHTTLKSVTVASEIYYDPDPRSTVIEDDEEIIQLHFSLMDEETEKSLDYQSP 1190
A+ +++ IE TTL + E Y PD +++ + + I+L L E +S+ Y
Sbjct: 1099 ARRVKARIEKTTLGEICDYIEEVYLPDDYFLLVKLNSKRIRL---LQLEVCMESISY--- 1152
Query: 1191 WLLRLELDRAAMTDKDLTMGQVGEKIKETFKNDLFVIWSEDNAEKLIIRCRVIRDPKTLD 1250
A+ + G KI K + IR P T
Sbjct: 1153 ----------AIATSKVCPQMRGCKIVAHGKTMM-----------------AIRPPST-- 1183
Query: 1251 ADVEAEEDHMLKKIENSMLEKITLRGVEDITRVVMMKYDRKVPSETGEYHKVPEWVLETD 1310
M +I L + ++G+ + R V+ ++K G+++ L +
Sbjct: 1184 ---SKLSKTMTMQILKYSLANVVVKGIPSVNRCVIHADEKK-----GDFYS-----LLVE 1230
Query: 1311 GVNLSEVMTVSGVDGSRIYTNSFIDIMNVLGIEAGRAALYREVYNVIASDGSYVNYRHMA 1370
G + V++ GVD + N+ + + +VLGIEA R+ + E+ + + G ++ RH+
Sbjct: 1231 GTDFRSVLSSVGVDPRKTNFNNALVVADVLGIEAARSCIINEIIATMDAHGIGLDRRHVM 1290
Query: 1371 LLVDVMTSQGFLMSVTRHGFNRADTGALMRCSFEETVEILFEAGAAAELDDCRGVSENVI 1430
LL DVMT +G ++ +TR+G + L+ SFE+T++ LFEA ++ D GVSE +I
Sbjct: 1291 LLADVMTYRGEVLGITRNGLVKMKDSVLLLASFEKTMDHLFEAAFFSQRDVIHGVSECII 1350
Query: 1431 LGQMAPIGTGAFDVM 1445
+G +GTG F +M
Sbjct: 1351 MGTPMTVGTGTFKLM 1365
>ECU07g0090 [K] KOG0261 RNA polymerase III large subunit
Length = 1349
Score = 541 bits (1394), Expect = e-153
Identities = 346/905 (38%), Positives = 489/905 (53%), Gaps = 79/905 (8%)
Query: 14 IKEVQFGLFSPEEVRGISVAKIEFPETMDESQMKAKIGGLNDPRLGSIDRNYKCQTCGEG 73
I+ + F L SP+E+ +SV +I + D S G D RLG ++ KC TCGEG
Sbjct: 47 IRRISFSLLSPQEISDLSVHEISSKDLYDISTRAPLPNGPLDLRLGVGNKKDKCATCGEG 106
Query: 74 MAECPGHFGHIELAKPVFHIGFLSKIKKVCESVCMHCGKLLLDE-----YNEQMRQAIKI 128
+A C GHFG + L PVF++G + +C CG +LL+E + +++R++
Sbjct: 107 LATCIGHFGEVRLVLPVFNVGLIKNTISTLNCLCKSCGSILLNEKKKIYFKKKLRESSGG 166
Query: 129 KDPKRRFNAVWTLCKAKMVCETEVPSPDDPTVFLSRGGCGHIQPSIRKD-GLSLVGTW-- 185
D K + CK VC C I+K G +V
Sbjct: 167 NDTKLILRRIVAECKKVNVCFV----------------CSFRNGQIKKTFGFRIVHEVED 210
Query: 186 ----KKDKNADDSDQPEKRIISAEEI-----LNVFKHISPEDGWRLGFNEDFSRPEWMIL 236
KKD+ + SD EEI LNVF + +D LGF E SR +I+
Sbjct: 211 LEKRKKDRGSKGSDGVHSSC--CEEINPLVALNVFNMMKEDDYELLGFLESPSR---LII 265
Query: 237 TXXXXXXXXXXXSISFNESQRGEDDLTYKLGDILKANINVQKLEINGSPQHVIQESESLL 296
S+S ++ EDD+T K+ +I+ N +++ G+P ++I E L
Sbjct: 266 QNVIVPPSCIRPSVSMDDEGTNEDDITIKISEIVHTNKVLREGIEKGNPLNLINEDWDHL 325
Query: 297 QFHVATYMDNDIAGQPQAVQKSGRPIKSIRARLKGKEGRIRGNLMGKRVDFSARTVISGD 356
Q A +++++ PQ + G+P++ I RLKGK GR R NL GKRVDFS RTVIS D
Sbjct: 326 QLQCALLINSEL---PQ-IGIPGQPVRGIVQRLKGKNGRFRCNLSGKRVDFSGRTVISPD 381
Query: 357 PNLDLDQVGVPKSIAKTLTYPEVVTPYNIDRLTQLVRNGPNEHPGAKYVIRESGDRIDLR 416
PNL +++VG+P+ +AK LT E VT N +L LV NGP +PGA YV+ E R L
Sbjct: 382 PNLSIEEVGIPERMAKILTISERVTRLNRRKLQALVLNGPENYPGANYVVGEKFKRF-LM 440
Query: 417 YSKRAGDIQLQYGWKVERHITDNDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRLNLSVTS 476
Y KR DI+L+YG VERH+ D D VLFNRQPSLH+MS+M+H+V+V T R N V +
Sbjct: 441 YGKR--DIELKYGEVVERHLMDGDMVLFNRQPSLHRMSIMSHKVRVHRNKTLRFNECVCT 498
Query: 477 PYNADFDGDEMNLHVPQSEETRAELSQLCAVPLQIVSPQSNKPCMGIVQDTLCGIRKMTL 536
PYNADFDGDEMN+HVPQ+E+ RAE S L +V IV+P+ +P + QD + G+ +T
Sbjct: 499 PYNADFDGDEMNVHVPQTEKARAEASVLMSVSNNIVTPRHGEPIVAATQDFITGLYLITG 558
Query: 537 RDTFIELDQVLNMLYWIPDWDGIIPTPAILKPVPLWSGKQVLSM-------------AIP 583
+DTF + ++ ++ + + + PAI KPV L++GKQ++ + A+
Sbjct: 559 KDTFFDRERFGQLVSYFSE-ARVGVKPAIRKPVELFTGKQLIEVLIKDSFTASIERNAVT 617
Query: 584 NGIHLQRFDDGTTFLS---PKDNGMLIIDGKIIFGVVDKKTVGSSS--GGLIHVVTREKG 638
+ + +F + P D + I+D FG +DK VG + LI+ + +
Sbjct: 618 GNMAVSLVGKNRSFKTHDDPNDGSVAILDNSYYFGRLDKSIVGGENKRDSLIYAIMKVSS 677
Query: 639 PEICARLFSNIQKVVNYWLLHNGFSIGIGDT----IADEKTMREITEAIAVAKKKVEDVT 694
R ++I K+ + +L GFSIG+ D I +K + A + K+ + +
Sbjct: 678 MA-AVRAMNSITKLCSRYLGETGFSIGLDDVQPGPILRQKKEMVVRRGYAECESKILEYS 736
Query: 695 KEAQANLLTAKHGMTLRESFEDNVVRYLNEARDKAGRSAEVNLKDLNNVKQMVSAGSKGS 754
K+ +AN E E + LN R++ G L N+ M + GSKGS
Sbjct: 737 KKPEAN----------EEMLEMEISSILNRIREECGSICIKELGIRNSPNIMQACGSKGS 786
Query: 755 FINIAQMSACVGQQSVEGKRIAFGFADRTLPHFSKDDYSPESKGFVENSYLRGLTPQEFF 814
IN++QM ACVGQQ V G RI G +R LPHF + +PESKGFV NS+ GLT EFF
Sbjct: 787 KINVSQMVACVGQQIVSGTRIPNGMDERCLPHFKRGSRTPESKGFVLNSFFDGLTSPEFF 846
Query: 815 FHAMGGREGLIDTAVKTAETGYIQRRLVKALEDIMVHYDGTTRNSLGNVIQFIYGEDGMD 874
FHA+ GREGL+DTAVKTAETGY+QRRL+KALED+ + YDG+ RNS V+QF YGED +D
Sbjct: 847 FHAVSGREGLVDTAVKTAETGYMQRRLMKALEDLSIQYDGSVRNSNMEVVQFAYGEDQID 906
Query: 875 AAHIE 879
A E
Sbjct: 907 PAMSE 911
Score = 174 bits (441), Expect = 1e-42
Identities = 128/410 (31%), Positives = 196/410 (47%), Gaps = 62/410 (15%)
Query: 1035 YRLNRQTFDWVLNNIEAQFLRSIVHPGEMVGVLAAQSIGEPATQMTLNTFHFAGVASKKV 1094
Y L++ + + + + + IV PG VG +A QSIGEP TQMTL TFHFAGVAS +
Sbjct: 996 YFLSKDFIETFFSMVSQKMMNLIVEPGTTVGAIAGQSIGEPGTQMTLKTFHFAGVASMNI 1055
Query: 1095 TSGVPRLKEILNVAKNMKTPSLTVYLDPEYAADQEKAKEIRSAIEHTTLKSVTVASEIYY 1154
T GVPRLKEI+N N+ TP + LD + D + + I+ ++ +LK V +
Sbjct: 1056 TLGVPRLKEIINAVCNISTPIINAELDDPH--DLFRTEVIKGRLDRISLKDVCSSL---- 1109
Query: 1155 DPDPRSTVIEDDEEIIQLHFSLMDEETEKSLDYQSPWLLRLELDRAAMTDKDLTMGQVGE 1214
+ VI DE + + +D +S L+L LD
Sbjct: 1110 -----TEVISKDEIFLDIR-----------VDLESLSRLKLNLDI--------------H 1139
Query: 1215 KIKETFKNDLFVIWSEDNAEKLIIRCRVIRDPKTLDADVEAEEDHMLKKIENSMLEKITL 1274
KI++ N V +N ++ I+ + + L++I+ +L +
Sbjct: 1140 KIEKLLNNHDQVRVVNENTLRVSIK------------KITDQSYFNLQRIKKKLLNT-KI 1186
Query: 1275 RGVEDITRVVMMKYDRKVPSETGEYHKVPEWVLETDGVNLSEVMTVSGVDGSRIYTNSFI 1334
G + RV+ + S G Y V E G L V+ + GV +NS
Sbjct: 1187 CGAPQVNRVI-------INSSRGLYSLVIE------GRGLLNVINIDGVKAINTTSNSIT 1233
Query: 1335 DIMNVLGIEAGRAALYREVYNVIASDGSYVNYRHMALLVDVMTSQGFLMSVTRHGFNRAD 1394
++ VLGIEA RA + E+ I++ G ++ RH+ LL D MT +G + +TR G ++
Sbjct: 1234 EVEEVLGIEAARAQIIHEIEYTISNHGIKIDPRHIMLLADTMTYRGEVFGITRFGISKMS 1293
Query: 1395 TGALMRCSFEETVEILFEAGAAAELDDCRGVSENVILGQMAPIGTGAFDV 1444
LM SFE+T + LFEA ++ D+ GVSE++ILG IGTG+ D+
Sbjct: 1294 RSTLMLASFEQTSDYLFEAAVQSKSDEICGVSESIILGIPICIGTGSMDL 1343
>At5g60040 [K] KOG0261 RNA polymerase III large subunit
Length = 1328
Score = 499 bits (1285), Expect = e-140
Identities = 332/923 (35%), Positives = 479/923 (50%), Gaps = 105/923 (11%)
Query: 10 PLRTIKEVQFGLFSPEEVRGISVAKIEFPETMDESQMKAKIGGLNDPRLGSIDRNYKCQT 69
PL+ IK + F + S EV + ++ D S K GL DPR+G ++ C T
Sbjct: 20 PLK-IKSINFSVLSDLEVMKAAEVQVWNIGLYDHS-FKPYENGLLDPRMGPPNKKSICTT 77
Query: 70 CGEGMAECPGHFGHIELAKPVFHIGFLSKIKKVCESVCMHCGKLLLDE--YNEQMRQAIK 127
C CPGH+G+++L PV+++G+ + I + + +C C +LLDE Y + +R K
Sbjct: 78 CEGNFQNCPGHYGYLKLDLPVYNVGYFNFILDILKCICKRCSNMLLDEKLYEDHLR---K 134
Query: 128 IKDPKRRFNAVWTLCKAKMV-CETEVPSPDDPTVFLSRGGCGHIQPSIRKD----GLSLV 182
+++P+ L KA + C T ++ CG++ ++K G+ +
Sbjct: 135 MRNPRMEPLKKTELAKAVVKKCSTMASQR-----IITCKKCGYLNGMVKKIAAQFGIGIS 189
Query: 183 GTWKK---------------DKNADDSDQPEKRIISAEEILNVFKHISPEDGWRLGFNED 227
K K + + P ++ +L +FK +S +D L
Sbjct: 190 HDRSKIHGGEIDECKSAISHTKQSTAAINPLTYVLDPNLVLGLFKRMSDKDCELLYIAY- 248
Query: 228 FSRPEWMILTXXXXXXXXXXXSISFNESQRGEDDLTYKLGDILKANINVQKL--EINGSP 285
RPE +I+T S+ Q E+DLT +L I+ N ++ K+ + SP
Sbjct: 249 --RPENLIITCMLVPPLSIRPSVMIGGIQSNENDLTARLKQIILGNASLHKILSQPTSSP 306
Query: 286 QHVIQESESLLQFHVATYMDNDIAGQPQAVQKSGRPIKSIRARLKGKEGRIRGNLMGKRV 345
+++ + +Q VA Y+++++ G Q P+ I RLKGK GR R NL GKRV
Sbjct: 307 KNM--QVWDTVQIEVARYINSEVRGCQN--QPEEHPLSGILQRLKGKGGRFRANLSGKRV 362
Query: 346 DFSARTVISGDPNLDLDQVGVPKSIAKTLTYPEVVTPYNIDRLTQLVRNGPNEHPGAKYV 405
+F+ RTVIS DPNL + +VG+P +A+ LT+PE V+ +NI++L Q VRNGPN++PGA+ V
Sbjct: 363 EFTGRTVISPDPNLKITEVGIPILMAQILTFPECVSRHNIEKLRQCVRNGPNKYPGARNV 422
Query: 406 IRESGDRIDL--RYSKRAGDIQLQYGWKVERHITDNDPVLFNRQPSLHKMSMMAHRVKVM 463
G L Y KR D +L G V+RH+ + D VLFNRQPSLH+MS+M HR ++M
Sbjct: 423 RYPDGSSRTLVGDYRKRIAD-ELAIGCIVDRHLQEGDVVLFNRQPSLHRMSIMCHRARIM 481
Query: 464 PYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAELSQLCAVPLQIVSPQSNKPCMGI 523
P+ T R N SV +PYNADFDGDEMN+HVPQ+EE R E L
Sbjct: 482 PWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEAITL------------------- 522
Query: 524 VQDTLCGIRKMTLRDTFIELDQVLNMLYWIPD-WDGI-IPTPAILKPVPLWSGKQVLSMA 581
+ DTF + + ++ D D I +PTP ILKP+ LW+GKQ+ S+
Sbjct: 523 ------------MGDTFYDRAAFSLICSYMGDGMDSIDLPTPTILKPIELWTGKQIFSVL 570
Query: 582 I-PNG---------IHLQRFDDGTTFLSPKDNGMLIIDGKIIF-------GVVDKKTVG- 623
+ PN + + F G D M I DG + F G + K T+
Sbjct: 571 LRPNASIRVYVTLNVKEKNFKKGEHGF---DETMCINDGWVYFRNSELISGQLGKATLAL 627
Query: 624 -------SSSGGLIHVVTREKGPEICARLFSNIQKVVNYWLLHNGFSIGIGDTIADEKTM 676
+ GL ++ R+ A + + K+ W+ +GFSIGI D E+
Sbjct: 628 DIFPLGNGNKDGLYSILLRDYNSHAAAVCMNRLAKLSARWIGIHGFSIGIDDVQPGEELS 687
Query: 677 REITEAIAVAKKKVEDVTKEAQANLLTAKHGMTLRESFEDNVVRYLNEARDKAGRSAEVN 736
+E ++I + +E L K G+ +S E + LN R+ G++
Sbjct: 688 KERKDSIQFGYDQCHRKIEEFNRGNLQLKAGLDGAKSLEAEITGILNTIREATGKACMSG 747
Query: 737 LKDLNNVKQMVSAGSKGSFINIAQMSACVGQQSVEGKRIAFGFADRTLPHFSKDDYSPES 796
L N+ M GSKGS INI+QM ACVGQQ+V G R GF DR+LPHF + SP +
Sbjct: 748 LHWRNSPLIMSQCGSKGSPINISQMVACVGQQTVNGHRAPDGFIDRSLPHFPRMSKSPAA 807
Query: 797 KGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTAETGYIQRRLVKALEDIMVHYDGTT 856
KGFV NS+ GLT EFFFH MGGREGL+DTAVKTA TGY+ RRL+KALED++VHYD T
Sbjct: 808 KGFVANSFYSGLTATEFFFHTMGGREGLVDTAVKTASTGYMSRRLMKALEDLLVHYDNTV 867
Query: 857 RNSLGNVIQFIYGEDGMDAAHIE 879
RN+ G ++QF YG+DGMD A +E
Sbjct: 868 RNASGCILQFTYGDDGMDPALME 890
Score = 181 bits (460), Expect = 7e-45
Identities = 129/403 (32%), Positives = 195/403 (48%), Gaps = 65/403 (16%)
Query: 1061 GEMVGVLAAQSIGEPATQMTLNTFHFAGVASKKVTSGVPRLKEILNVAKNMKTPSLTVYL 1120
G +G + AQSIGEP TQMTL TFHFAGVAS +T GVPR+ EI+N +KN+ TP ++ L
Sbjct: 981 GTAIGTIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRINEIINASKNISTPVISAEL 1040
Query: 1121 DPEYAADQEKAKEIRSAIEHTTLKSVTVASEIYYDPDPRSTVIEDDEEIIQLHFSLMDEE 1180
E + A+ ++ IE TTL V + E+ S I D +II EE
Sbjct: 1041 --ENPLELTSARWVKGRIEKTTLGQVAESIEVLMTSTSASVRIILDNKII--------EE 1090
Query: 1181 TEKSLDYQSPWLLR---LELDRAAMTDKDLTMGQVGEKIKETFKNDLFVIWSEDNAEKLI 1237
S+ +PW ++ L+ R + D D+
Sbjct: 1091 ACLSI---TPWSVKNSILKTPRIKLNDNDI------------------------------ 1117
Query: 1238 IRCRVIRDPKTLDADVEAEEDHM-LKKIENSMLEKITLRGVEDITRVVMMKYDRKVPSET 1296
RV+ + V+ H L ++N G++ + RVV+ + K
Sbjct: 1118 ---RVLDTGLDITPVVDKSRAHFNLHNLKN---------GIKTVERVVVAEDMDKSKQID 1165
Query: 1297 GEYHKVPEWVLETDGVNLSEVMTVSGVDGSRIYTNSFIDIMNVLGIEAGRAALYREVYNV 1356
G+ +W L +G NL VM G++G +N+ +++ LGIEA R + E+ V
Sbjct: 1166 GK----TKWKLFVEGTNLLAVMGTPGINGRTTTSNNVVEVSKTLGIEAARTTIIDEIGTV 1221
Query: 1357 IASDGSYVNYRHMALLVDVMTSQGFLMSVTRHGFNRADTGALMRCSFEETVEILFEAGAA 1416
+ + G ++ RHM LL DVMT +G ++ + R G + D LM+ SFE T + LF A A+
Sbjct: 1222 MGNHGMSIDIRHMMLLADVMTYRGEVLGIQRTGIQKMDKSVLMQASFERTGDHLFSAAAS 1281
Query: 1417 AELDDCRGVSENVILGQMAPIGTGAFDVM--IDDESLVKYMPE 1457
++D+ GV+E VI+G +GTG V+ DD +KY P+
Sbjct: 1282 GKVDNIEGVTECVIMGIPMKLGTGILKVLQRTDDLPKLKYGPD 1324
>7303170 [K] KOG0262 RNA polymerase I large subunit
Length = 1642
Score = 441 bits (1135), Expect = e-123
Identities = 307/940 (32%), Positives = 492/940 (51%), Gaps = 121/940 (12%)
Query: 296 LQFHVATYMDNDIAGQPQAVQKSGRPIKSIRARLKGKEGRIRGNLMGKRVDFSARTVISG 355
LQ V +D +++ + KSG +K I ++ K G IR ++MGKRV+++ARTVI+
Sbjct: 377 LQMSVDVLLDVNMSRE----MKSGEGLKQI---IEKKSGLIRSHMMGKRVNYAARTVITP 429
Query: 356 DPNLDLDQVGVPKSIAKTLTYPEVVTPYNIDRLTQLVRNGPNEHPGAKYVIRESGDRIDL 415
DPN+++D++G+P AK L+YP VT +N+ L ++V NGP+ HPGA Y+ ++G +
Sbjct: 430 DPNINVDEIGIPDIFAKKLSYPVPVTEWNVTELRKMVMNGPDVHPGANYIQDKNGFTTYI 489
Query: 416 ---RYSKRAGDIQL-----QYGWK-VERHITDNDPVLFNRQPSLHKMSMMAHRVKVMP-Y 465
SKR +L + G K V RH+ + D +L NRQPSLHK S+M H+ +++
Sbjct: 490 PADNASKRESLAKLLLSNPKDGIKIVHRHVLNGDVLLLNRQPSLHKPSIMGHKARILHGE 549
Query: 466 STFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAELSQLCAVPLQIVSPQSNKPCMGIVQ 525
TFRL+ S YNADFDGDEMN H PQSE RAE L V + P+ P G++Q
Sbjct: 550 KTFRLHYSNCKAYNADFDGDEMNAHYPQSEVARAEAYNLVNVASNYLVPKDGTPLGGLIQ 609
Query: 526 DTLCGIRKMTLRDTFIELDQVLNMLYW----IPDWDGIIPTPAILKPVPLWSGKQVLSMA 581
D + K+++R F + +++ + ++P P ILKP LWSGKQ+LS
Sbjct: 610 DHVISGVKLSIRGRFFNREDYQQLVFQGLSQLKKDIKLLP-PTILKPAVLWSGKQILSTI 668
Query: 582 I----PNGIHLQRFDDGTTFL----------------SPKDNGML-----IIDGKIIFGV 616
I P G D +P+ N + I +G+++ GV
Sbjct: 669 IINIIPEGYERINLDSFAKIAGKNWNVSRPRPPICGTNPEGNDLSESQVQIRNGELLVGV 728
Query: 617 VDKKTVGSSSGGLIHVVTREKGPEICARLFSNIQKVVNYWLLHNGFSIGIGDT----IAD 672
+DK+ G+++ GLIH + G ++ L + KV ++L GF++G+ D +AD
Sbjct: 729 LDKQQYGATTYGLIHCMYELYGGDVSTLLLTAFTKVFTFFLQLEGFTLGVKDILVTDVAD 788
Query: 673 EKTMREITEAIAVAKKKV-------------EDVTKEAQANLLTAKHGMTLRESFEDNVV 719
K + I E V V E V K A + +K + L ++ +
Sbjct: 789 RKRRKIIRECRNVGNSAVAAALELEDEPPHDELVEKMEAAYVKDSKFRVLLDRKYKSLLD 848
Query: 720 RYLNEARDKAGRSAEVNLKDLNNVKQMVSAGSKGSFINIAQMSACVGQQSVEGKRIAFGF 779
Y N+ + NN++ MV +G+KGS +N Q+S +GQ +EGKR
Sbjct: 849 GYTNDINSTCLPRGLITKFPSNNLQLMVLSGAKGSMVNTMQISCLLGQIELEGKRPPLMI 908
Query: 780 ADRTLPHFSKDDYSPESKGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTAETGYIQR 839
+ ++LP F+ + SP+S GF++ ++ G+ PQ+FFFH M GREGLIDTAVKT+ +GY+QR
Sbjct: 909 SGKSLPSFTSFETSPKSGGFIDGRFMTGIQPQDFFFHCMAGREGLIDTAVKTSRSGYLQR 968
Query: 840 RLVKALEDIMVHYDGTTRNSLGNVIQFIYGEDGMDAAHIEKQSIDTIPGSDSAFERRYRI 899
L+K LE + VHYD T R+S +V+QF+YGEDG+D +
Sbjct: 969 CLIKHLEGLSVHYDLTVRDSDNSVVQFLYGEDGLDI---------------------LKS 1007
Query: 900 DLLNEEYALDPSLLESGSEIIGDSKLQLLLNDEYKQLVDDRQILRRVFVDGEHNW--PLP 957
N+++ D L ++ + I+ ++LQL+ ++E QL ++ + + +W P
Sbjct: 1008 KFFNDKFCAD-FLTQNATAILRPAQLQLMKDEE--QLAKVQRHEKHI-----RSWEKKKP 1059
Query: 958 VNIKRIIQNSQQTFR--IDQTKPTDLTIEDVISGVRKLQEKLLVVRGKSDILKEAQQNAI 1015
++ + + R ++ +P ++ + +G R+ E LL + K+D +A
Sbjct: 1060 AKLRAAFTHFSEELREEVEVKRPNEINSK---TGRRRFDEGLLKLWKKADAEDKALYRKK 1116
Query: 1016 TLFC-----CLLRSRL-------ATRRVIEEYRLNRQTF-DWVLNNIEAQFLRSIVHPGE 1062
C + + L TR++I +Y + + + + + + ++S+ PGE
Sbjct: 1117 YARCPDPTVAVYKQDLYYGSVSERTRKLITDYAKRKPALKETIADIMRVKTIKSLAAPGE 1176
Query: 1063 MVGVLAAQSIGEPATQMTLNTFHFAGVASKKVTSGVPRLKEILNVA-KNMKTPSLTVYLD 1121
VG++AAQSIGEP+TQMTLNTFHFAG VT G+PRL+EIL +A N+KTPS+ + +
Sbjct: 1177 PVGLIAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMLASSNIKTPSMDIPIK 1236
Query: 1122 PEYAADQEKAKEIRSAIEHTTLKS----VTVASEIYYDPD 1157
P Q +A+++R + TL + V V++ + DP+
Sbjct: 1237 P---GQQHQAEKLRINLNSVTLANLLEYVHVSTGLTLDPE 1273
Score = 79.7 bits (195), Expect = 4e-14
Identities = 84/353 (23%), Positives = 150/353 (41%), Gaps = 36/353 (10%)
Query: 1101 LKEILNVAKNMKTPSLTVYLDPEYAADQEKAKEIRSAIEHTTLKSVTVASEIYYDPDPRS 1160
++ IL V+ +T + V +D + AD+E ++ + E K+ + D D
Sbjct: 1314 IRAILKVSNASRTTKIVV-IDDKKDADKEDDNDLDNGDEVGRSKAKANDDDSSDDND--- 1369
Query: 1161 TVIEDDEEIIQLHFSLMDEETEKSLDYQSPWLLRLELDRAAMTDKDLTMGQVG------- 1213
+DD ++L DE+ D + D A + D GQ G
Sbjct: 1370 ---DDDATGVKLKQRKTDEKDYDDPDDVEELHDANDDDDEAEDEDDEEKGQDGNDNDGDD 1426
Query: 1214 EKIKETFKNDLFVIWSEDNAEKLIIRCRVIRDPKTLDADVEAEEDHMLKKIENSMLEKIT 1273
+ ++ ND+ ++ D L C+V L+ V ++ L I + K
Sbjct: 1427 KAVERLLSNDMVKAYTYDKENHLW--CQV-----KLNLSVRYQKPD-LTSIIRELAGKSV 1478
Query: 1274 LRGVEDITRVVMMKYDRKVPSETGEYHKVPEWVLETDGVNLSEVMTVSGV-DGSRIYTNS 1332
+ V+ I R ++ K + +L+TDG+N+ E+ + + D +R+Y+N
Sbjct: 1479 VHQVQHIKRAIIYKGTDD------------DQLLKTDGINIGEMFQHNKILDLNRLYSND 1526
Query: 1333 FIDIMNVLGIEAGRAALYREVYNVIASDGSYVNYRHMALLVDVMTSQGFLMSVTRHGFNR 1392
I GIEA + +EV NV G V+ RH++L+ D MT G ++R G
Sbjct: 1527 IHAIARTYGIEAASQVIVKEVSNVFKVYGITVDRRHLSLIADYMTFDGTFQPLSRKGMEH 1586
Query: 1393 ADTGALMRCSFEETVEILFEAGAAAELDDCRGVSENVILGQMAPIGTGAFDVM 1445
+ + L + SFE +++ L A D+ S +++G GTGAF+++
Sbjct: 1587 S-SSPLQQMSFESSLQFLKSAAGFGRADELSSPSSRLMVGLPVRNGTGAFELL 1638
Score = 68.6 bits (166), Expect = 9e-11
Identities = 38/104 (36%), Positives = 63/104 (60%), Gaps = 3/104 (2%)
Query: 16 EVQFGLFSPEEVRGISVAKIEFPETMDESQMKAKIGGLNDPRLGSIDRNYK-CQTCGEGM 74
+++F +F+ +E+R +SV K+ T D + A GGL D R+GS R C TC + +
Sbjct: 15 DLEFAVFTDQEIRKLSVVKVITGITFD-ALGHAIPGGLYDIRMGSYGRCMDPCGTCLK-L 72
Query: 75 AECPGHFGHIELAKPVFHIGFLSKIKKVCESVCMHCGKLLLDEY 118
+CPGH GHIEL PV++ F+ ++++ C+HC KL + ++
Sbjct: 73 QDCPGHMGHIELGTPVYNPFFIKFVQRLLCIFCLHCYKLQMKDH 116
>ECU04g1400 [K] KOG0262 RNA polymerase I large subunit
Length = 1395
Score = 387 bits (994), Expect = e-107
Identities = 292/981 (29%), Positives = 481/981 (48%), Gaps = 86/981 (8%)
Query: 15 KEVQFGLFSPEEVRGISVAKIEFPETMDESQMKAKIGGLNDPRLGSIDRNYKCQTCGEGM 74
K + FG +S EE+ S ++ P D+ + GGL D R+G +D + C+TC
Sbjct: 8 KNISFGSYSDEEIERNSCMEVVVPGCFDKFGHPIR-GGLYDLRMGPLDLSSNCKTCNLSF 66
Query: 75 AECPGHFGHIELAKPVFHIGFLSKIKKVCESVCMHCGKLLLDEYN--------------- 119
CPGHFGHI+L++ V + F + + C C + Y+
Sbjct: 67 LNCPGHFGHIKLSRIVLNPMFFDSLFSIVRCYCFQCKHFRITNYDRLILFCKFSLLLNGE 126
Query: 120 --EQMRQAIKIKDPKRRFNAVWTLCKAKMVCETEVPSPDDPTV---FLSRGG-------C 167
E + + + + + + V + +E V FL G C
Sbjct: 127 EAEDLDRLYMVSEEEELYKIVSERIENAKKNRSEPLMESHQEVVHRFLQNAGSRRKCVRC 186
Query: 168 GHIQPSIRKDGLSLVGTWKKDKNADDSDQPEKRIISAEEILNVFKHISPEDGWRLGFNED 227
GH P I K V + N D D + +S + + + + + L +
Sbjct: 187 GHSNPKIVKGAKMKVLKDLRKGNEKDEDGKDLEFLSPDAVRELMDDLFSNEA-DLIESIF 245
Query: 228 FSRPEWMILTXXXXXXXXXXXSISFNESQRGEDDLTYKLGDILKANINVQKLEINGSPQH 287
F R M + + ++ E+ T L DIL+ ++ V K +++ P+
Sbjct: 246 FRRDPGMFFISNLPVIPNRFRPMIVLDGKKAENFQTLYLNDILRVSVLVTK-DLSYWPE- 303
Query: 288 VIQESESLLQFHVATYMDNDIAGQPQAVQKSGRPIKSIRARLKGKEGRIRGNLMGKRVDF 347
LQ + + DN + + K I L+ K+G R N+MGKRV+F
Sbjct: 304 --------LQAAILSSFDNKNISKWSRTRMVPPGHKQI---LERKDGLFRRNIMGKRVNF 352
Query: 348 SARTVISGDPNLDLDQVGVPKSIAKTLTYPEVVTPYNIDRLTQLVRNGPNEHPGAKYVIR 407
+ARTVIS DPNL+ ++G+P A+ LT+PE +N+DRL + V NGP +PG+ Y+
Sbjct: 353 AARTVISPDPNLETREIGIPLVFAEALTFPERAASFNVDRLKKAVVNGPT-YPGSLYL-- 409
Query: 408 ESGD-RIDLRY----SKRAGDIQLQYGWKVE-RHITDNDPVLFNRQPSLHKMSMMAHRVK 461
+ GD + L + + A QL G KV RH+ D D VL NRQP+LH+ S+MAH+ +
Sbjct: 410 QDGDVMLSLAHMPDEKRYALANQLLDGKKVVWRHLVDGDVVLMNRQPTLHRPSIMAHKCR 469
Query: 462 VMPYS-TFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAELSQLCAVPLQIVSPQSNKPC 520
V+ T R++ + YNADFDGDEMN+H PQ+ + AE + + P + KP
Sbjct: 470 VLRKERTLRMHYANCKSYNADFDGDEMNVHFPQNYASEAESRHIVMNDSNYLVPTNGKPI 529
Query: 521 MGIVQDTLCGIRKMTLRDTFIELDQVLNMLY-WIPDWDGIIPTPAILKPVPLWSGKQVLS 579
G+VQD + + +T++D+F + ++ + D ++ P I+KP L+SG+QV+S
Sbjct: 530 RGLVQDHIVIVTVLTMKDSFFSEEDYFTLVNAGLSDRRIVLDRPCIVKPARLYSGRQVIS 589
Query: 580 MAIPN-----GIHLQRFDDGTTFLSPKDNGMLII-DGKIIFGVVDKKTVGSSSGGLIHVV 633
+ N I ++ + + +L I +G I+ G++DK ++G + LIH
Sbjct: 590 TILKNLGLVVNIEIETNVPKNAWREHSEERILRIREGNIVTGILDKNSLGPTFKSLIHAC 649
Query: 634 TREKGPEICARLFSNIQKVVNYWLLHNGFSIGIGDTIADEKTMREITEAIAVAKKKVEDV 693
KG L + I V N +LL GF+IGI D + D++ ++ E + V ++
Sbjct: 650 GEIKGFATSNDLLTYIGWVGNRYLLMYGFTIGIDDLLLDKEADKKRREVVRVKDQEA--- 706
Query: 694 TKEAQANLLTAKHGMTL---RESFEDNVVRYLNEARDKAGRSAEVNLKD-------LNNV 743
KE Q + A L ++++ D+V+R E +V++ NN+
Sbjct: 707 -KELQRRYVEANPDFYLYADKKAYLDSVMR--TEMNSVTSEIVKVSVPSGLQKSFPENNM 763
Query: 744 KQMVSAGSKGSFINIAQMSACVGQQSVEGKRIAFGFADRTLPHFSKDDYSPESKGFVENS 803
+ +++ GSKGS +N++Q+S +GQQ +EG+R+ + +TLP F+ D SP S G++ +
Sbjct: 764 ELIIATGSKGSIVNLSQISGALGQQELEGQRVPIMASGKTLPCFAALDPSPSSGGYIYHR 823
Query: 804 YLRGLTPQEFFFHAMGGREGLIDTAVKTAETGYIQRRLVKALEDIMVHYDGTTRNSLGNV 863
+L G+ ++FFH M GREGLIDTA+KTA +GY+QR L+K +E+ V YD + R V
Sbjct: 824 FLTGIDLPQYFFHCMAGREGLIDTAIKTANSGYLQRCLIKHMEEAKVEYDMSVRIG-KRV 882
Query: 864 IQFIYGEDGMDAAHIEKQSIDTIPGSDSAFERRYRIDLLNEEYALDPSLLESGSEIIG-D 922
IQF+YGEDG+D + +D D+ F +R + L + ++ L + + +
Sbjct: 883 IQFMYGEDGLDCT--KSSYLD-----DAEFFKR-NVLLFGKSASIVSKLEDRYKDFLSLK 934
Query: 923 SKLQL-LLNDEYKQLVDDRQI 942
+ Q+ LL+DE ++ + DR I
Sbjct: 935 FRKQIDLLDDELRRFLADRYI 955
Score = 124 bits (311), Expect = 1e-27
Identities = 115/452 (25%), Positives = 196/452 (42%), Gaps = 76/452 (16%)
Query: 1052 QFLRSIVHPGEMVGVLAAQSIGEPATQMTLNTFHFAGVASKKVTSGVPRLKEIL-NVAKN 1110
+++ S+ PGE VGV+AAQS+GEP+TQMTLNTFH AGV +K VT GVPRL+EIL +K+
Sbjct: 953 RYICSLADPGESVGVIAAQSVGEPSTQMTLNTFHLAGVGAKNVTLGVPRLREILITASKS 1012
Query: 1111 MKTPSLTVYLDPEYAADQEKAKEIRSAIEHTTLK----------SVTVASEIYYDPDPRS 1160
++TP +TV + + D I + TLK + + S ++ +
Sbjct: 1013 IRTPLITVPIKRRVSFD------ITECLRRVTLKDCVKRFGVTEEIVMVSGVF---QKKV 1063
Query: 1161 TVIEDDEEIIQLHFSLMDEETEKSLDYQSPWLLR----LELDRAAMTD------------ 1204
++ + + + L ++D + K L + L + L + A D
Sbjct: 1064 KIMFELDNFVDLAGEVLDRKFLKLLGNKMKGLAKAKYTLGMSEAPKDDCKEVDENKENEG 1123
Query: 1205 ------------------KDLTMGQVGEKIKETFKNDLFVIWSE----------DNAEKL 1236
+ T G+ G+K E E + E
Sbjct: 1124 EDESDSDKESDPEGDNVCLEATTGENGDKDSEDHSTSYLEATDETDQTDDSGNTEEEEDF 1183
Query: 1237 IIRCRVIRDPKTLDADVEAEEDHMLKKIENSMLEKITLRGVEDITRVVMMKYDRKVPSET 1296
+ + ++ T + + + M+ + S+L I +R V+ + + + V S +
Sbjct: 1184 MNFAKKSKNVLTFEILYPSGFNEMISSVVESILPTIVVREVKGMEKASVSGSQLFVKSSS 1243
Query: 1297 GEYHKVPEWVLETDGV--NLSEVMTVSGVDGSRIYTNSFIDIMNVLGIEAGRAALYREVY 1354
+ + + + GV +L +++ + + + IY D+ LG+EA R A+ EV
Sbjct: 1244 --IYSLTRMIEVSPGVYEDLLDILDIYNAESNDIY-----DVYLTLGVEAARHAIINEVV 1296
Query: 1355 NVIASDGSYVNYRHMALLVDVMTSQGFLMSVTRHGFNRADTGALMRCSFEETVEILFEAG 1414
V G ++ RH+ L+ D MT +G +RHG AD + R SFE F+
Sbjct: 1297 KVFDVYGISIDIRHLLLIADYMTRKGSYSPFSRHGLG-ADDSPIQRISFESCYS-NFKTA 1354
Query: 1415 AAAELDD-CRGVSENVILGQMAPIGTGAFDVM 1445
A L+D S ++ +G GTG FD++
Sbjct: 1355 ATFHLEDKLSNPSASLTVGNPVRCGTGCFDLI 1386
>YOR341w [K] KOG0262 RNA polymerase I large subunit
Length = 1664
Score = 351 bits (900), Expect = 7e-96
Identities = 218/627 (34%), Positives = 343/627 (53%), Gaps = 56/627 (8%)
Query: 304 MDNDIAGQPQAVQKSGR-----PIKSIRARLKGKEGRIRGNLMGKRVDFSARTVISGDPN 358
+ ND+ + + GR PI ++ L+ KEG R ++MGKRV+++AR+VIS DPN
Sbjct: 430 IQNDVNAFIDSTKAQGRTSGKVPIPGVKQALEKKEGLFRKHMMGKRVNYAARSVISPDPN 489
Query: 359 LDLDQVGVPKSIAKTLTYPEVVTPYNIDRLTQLVRNGPNEHPGAKYVIRESGDRIDLR-- 416
++ +++GVP A LTYPE VT YNI L Q V NGP++ PGA + E G + L
Sbjct: 490 IETNEIGVPPVFAVKLTYPEPVTAYNIAELRQAVINGPDKWPGATQIQNEDGSLVSLIGM 549
Query: 417 --YSKRAGDIQL----------QYGWKVERHITDNDPVLFNRQPSLHKMSMMAHRVKVMP 464
++A QL KV RHI + D VL NRQP+LHK SMM H+V+V+P
Sbjct: 550 SVEQRKALANQLLTPSSNVSTHTLNKKVYRHIKNRDVVLMNRQPTLHKASMMGHKVRVLP 609
Query: 465 YS-TFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAELSQLCAVPLQIVSPQSNKPCMGI 523
T RL+ + T YNADFDGDEMN+H PQ+E RAE L Q ++P S P G+
Sbjct: 610 NEKTLRLHYANTGAYNADFDGDEMNMHFPQNENARAEALNLANTDSQYLTPTSGSPVRGL 669
Query: 524 VQDTLCGIRKMTLRDTFIELDQVLNMLYW-IPDWDG-------IIPTPAILKPVPLWSGK 575
+QD + +T +D+F +Q +Y I DG + P I KP PLW+GK
Sbjct: 670 IQDHISAGVWLTSKDSFFTREQYQQYIYGCIRPEDGHTTRSKIVTLPPTIFKPYPLWTGK 729
Query: 576 QVLSMAIPN-------GIHL---QRFDDGTTFLSPKDNGMLIIDGKIIFGVVDKKTVGSS 625
Q+++ + N GI+L + + +N +L DG ++ G++DK G+S
Sbjct: 730 QIITTVLLNVTPPDMPGINLISKNKIKNEYWGKGSLENEVLFKDGALLCGILDKSQYGAS 789
Query: 626 SGGLIHVVTREKGPEICARLFSNIQKVVNYWLLHNGFSIGIGD---TIADEKTMREITEA 682
G++H + GPE+ A++ S + ++ ++ F+ G+ D T K +I +
Sbjct: 790 KYGIVHSLHEVYGPEVAAKVLSVLGRLFTNYITATAFTCGMDDLRLTAEGNKWRTDILKT 849
Query: 683 IA----VAKKKVEDVTKEAQAN--LLTAKHGMTLRESFEDNVVRYLNEARDKAGRSAEVN 736
A +V ++ K+ A+ L + LR++ + ++ + ++ A S V+
Sbjct: 850 SVDTGREAAAEVTNLDKDTPADDPELLKRLQEILRDNNKSGILDAVTSSKVNAITSQVVS 909
Query: 737 -------LKDL--NNVKQMVSAGSKGSFINIAQMSACVGQQSVEGKRIAFGFADRTLPHF 787
+K N+++ M +G+KGS +N++Q+ +GQQ++EG+R+ + +TLP F
Sbjct: 910 KCVPDGTMKKFPCNSMQAMALSGAKGSNVNVSQIMCLLGQQALEGRRVPVMVSGKTLPSF 969
Query: 788 SKDDYSPESKGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTAETGYIQRRLVKALED 847
+ + G+V+ + G+ PQE++FH M GREGLIDTAVKT+ +GY+QR L K LE
Sbjct: 970 KPYETDAMAGGYVKGRFYSGIKPQEYYFHCMAGREGLIDTAVKTSRSGYLQRCLTKQLEG 1029
Query: 848 IMVHYDGTTRNSLGNVIQFIYGEDGMD 874
+ V YD + R++ G ++QF+YG D +D
Sbjct: 1030 VHVSYDNSIRDADGTLVQFMYGGDAID 1056
Score = 114 bits (285), Expect = 1e-24
Identities = 118/492 (23%), Positives = 215/492 (42%), Gaps = 99/492 (20%)
Query: 1049 IEAQFLRSIVHPGEMVGVLAAQSIGEPATQMTLNTFHFAGVASKKVTSGVPRLKEILNVA 1108
++ +++RS+++PGE VG++A+QS+GEP+TQMTLNTFHFAG + VT G+PRL+EI+ A
Sbjct: 1170 MQLKYMRSLINPGEAVGIIASQSVGEPSTQMTLNTFHFAGHGAANVTLGIPRLREIVMTA 1229
Query: 1109 K-NMKTPSLTVYLDPEYAADQEK--AKEI-----RSAIEHTTLKSVTVASEIYYDPDPRS 1160
+KTP +T+ + + + +Q K I I+ + T S RS
Sbjct: 1230 SAAIKTPQMTLPIWNDVSDEQADTFCKSISKVLLSEVIDKVIVTETTGTSNTAGGNAARS 1289
Query: 1161 TVIE----DDEEIIQLHFSLMDEETEKSLDYQSPWLL----------------------- 1193
VI D+ E + + + EE + + Q LL
Sbjct: 1290 YVIHMRFFDNNEYSE-EYDVSKEELQNVISNQFIHLLEAAIVKEIKKQKRTTGPDIGVAV 1348
Query: 1194 -RLELDRAAMTDKDLTMGQVGEKIKETFKNDLFVIWSEDNAEKL--IIRCRVIRDPKTLD 1250
RL+ D A + + + ++ + K V + E + +++ + D + +D
Sbjct: 1349 PRLQTDVANSSSNSKRLEEDNDEEQSHKKTKQAVSYDEPDEDEIETMREAEKSSDEEGID 1408
Query: 1251 ADVEAEEDHMLKKIENSMLEKITLRGVEDITRVVMMKYDRK--------------VPSET 1296
+D E++ D + ++ M E+I VE + ++ DR+ E+
Sbjct: 1409 SDKESDSDSEDEDVD--MNEQINKSIVEANNNMNKVQRDRQSAIISHHRFITKYNFDDES 1466
Query: 1297 GEYHKVP-EWVLETDG---VNLSEVMTVSGV----------------DGSRIYTNSFID- 1335
G++ + E +T+ VN+ E + + +G R+ ++
Sbjct: 1467 GKWCEFKLELAADTEKLLMVNIVEEICRKSIIRQIPHIDRCVHPEPENGKRVLVTEGVNF 1526
Query: 1336 --------IMNVLGIEAGRAALYREVYNVIASDGSYVN--------------YRHMALLV 1373
++V GI + A + Y V A+ + VN +RH+ L+
Sbjct: 1527 QAMWDQEAFIDVDGITSNDVAAVLKTYGVEAARNTIVNEINNVFSRYAISVSFRHLDLIA 1586
Query: 1374 DVMTSQGFLMSVTRHGFNRADTGALMRCSFEETVEILFEAGAAAELDDCRGVSENVILGQ 1433
D+MT QG ++ R G T + M+ S+E T + L +A E + S +++G+
Sbjct: 1587 DMMTRQGTYLAFNRQGM-ETSTSSFMKMSYETTCQFLTKAVLDNEREQLDSPSARIVVGK 1645
Query: 1434 MAPIGTGAFDVM 1445
+ +GTG+FDV+
Sbjct: 1646 LNNVGTGSFDVL 1657
Score = 63.5 bits (153), Expect = 3e-09
Identities = 40/116 (34%), Positives = 57/116 (48%), Gaps = 3/116 (2%)
Query: 14 IKEVQFGLFSPEEVRGISVAKIEFPETMDESQMKAKIGGLNDPRLGSIDRNYKCQTCGEG 73
I V FG+ + +E+R +S +I P +D GGL D LG+ RN C TCG
Sbjct: 11 ITSVDFGILTAKEIRNLSAKQITNPTVLDNLGHPVS-GGLYDLALGAFLRNL-CSTCGLD 68
Query: 74 MAECPGHFGHIELAKPVFHIGFLSKIKKVCESVCMHCGKLLLDEYNEQMRQAIKIK 129
CPGH GHIEL P ++ F +++ + C+ C L E R A K++
Sbjct: 69 EKFCPGHQGHIELPVPCYNPLFFNQLYIYLRASCLFCHHFRLKSV-EVHRYACKLR 123
>Hs7661686 [K] KOG0262 RNA polymerase I large subunit
Length = 1717
Score = 344 bits (883), Expect = 6e-94
Identities = 222/638 (34%), Positives = 336/638 (51%), Gaps = 65/638 (10%)
Query: 296 LQFHVATYMDNDIAGQPQAVQKSGRPIKSIRARLKGKEGRIRGNLMGKRVDFSARTVISG 355
LQ HV D+++ + + P IR L+ KEG R ++MGKRVD +AR+VI
Sbjct: 394 LQSHVNIVFDSEM----DKLMRDKYP--GIRQILEKKEGLFRKHMMGKRVDSTARSVICP 447
Query: 356 DPNLDLDQVGVPKSIAKTLTYPEVVTPYNIDRLTQLVRNGPNEHPGAKYVIRESGDR--- 412
D ++ +++G+P A LTYP+ VTP+N+ L Q V NGPN HPGA VI E G R
Sbjct: 448 DMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVINGPNVHPGASMVINEDGSRTAL 507
Query: 413 --IDLRYSKRAGDIQLQ--------YGWKVE-RHITDNDPVLFNRQPSLHKMSMMAHRVK 461
+D+ + L G K+ RH+ + D +L NRQP+LH+ S+ AHR +
Sbjct: 508 SAVDMTQREAVAKQLLTPATGAPKPQGTKIVCRHVKNGDILLLNRQPTLHRPSIQAHRAR 567
Query: 462 VMPYS-TFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAELSQLCAVPLQIVSPQSNKPC 520
++P RL+ + YNADFDGDEMN H PQSE RAE L Q + P+ +P
Sbjct: 568 ILPEEKVLRLHYANCKAYNADFDGDEMNAHFPQSELGRAEAYVLACTDQQYLVPKDGQPL 627
Query: 521 MGIVQDTLCGIRKMTLRDTFIELDQVLNMLY-WIPDWDGIIP--TPAILKPVPLWSGKQV 577
G++QD + MT R F + + ++Y + D G + +P+ILKP PLW+GKQV
Sbjct: 628 AGLIQDHMVSGASMTTRGCFFTREHYMELVYRGLTDKVGRVKLLSPSILKPFPLWTGKQV 687
Query: 578 LSMAIPNGI---HLQRFDDGTTFLSPK-------------------DNGMLIIDGKIIFG 615
+S + N I H+ G ++ K ++ ++I +G+++ G
Sbjct: 688 VSTLLINIIPEDHIPLNLSGKAKITGKAWVKETPRSVPGFNPDSMCESQVIIREGELLCG 747
Query: 616 VVDKKTVGSSSGGLIHVVTREKGPEICARLFSNIQKVVNYWL-LHNGFSIGIGDTIA--- 671
V+DK GSS+ GL+H G E ++ + + ++ +L L+ GF++G+ D +
Sbjct: 748 VLDKAHYGSSAYGLVHCCYEIYGGETSGKVLTCLARLFTAYLQLYRGFTLGVEDILVKPK 807
Query: 672 -DEKTMREITEAIAVAKKKVEDVTK--------EAQANLLTAKHGMTLRE------SFED 716
D K R I E+ + V E + A G R+ F++
Sbjct: 808 RDVKRQRIIEESTHCGPQAVRAALNLPEAASYDEVRGKWQDAHLGKDQRDFNMIDLKFKE 867
Query: 717 NVVRYLNEARDKAGRSAEVNLKDLNNVKQMVSAGSKGSFINIAQMSACVGQQSVEGKRIA 776
V Y NE N ++ MV +G+KGS +N Q+S +GQ +EG+
Sbjct: 868 EVNHYSNEINKACMPFGLHRQFPENTLQLMVQSGAKGSTVNTMQISCLLGQIELEGRSTP 927
Query: 777 FGFADRTLPHFSKDDYSPESKGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTAETGY 836
+ ++LP F +++P + GFV +L G+ P EFFFH M GREGL+DTAVKT+ +GY
Sbjct: 928 LMASGKSLPCFEPYEFTPRAGGFVTGRFLTGIKPPEFFFHCMAGREGLVDTAVKTSRSGY 987
Query: 837 IQRRLVKALEDIMVHYDGTTRNSLGNVIQFIYGEDGMD 874
+QR ++K LE ++V YD T R+S G+V+QF+YGEDG+D
Sbjct: 988 LQRCIIKHLEGLVVQYDLTVRDSDGSVVQFLYGEDGLD 1025
Score = 90.1 bits (222), Expect = 3e-17
Identities = 46/87 (52%), Positives = 62/87 (70%), Gaps = 1/87 (1%)
Query: 1033 EEYRLNRQTFDWVLNNIEAQFLRSIVHPGEMVGVLAAQSIGEPATQMTLNTFHFAGVASK 1092
+ Y + + D + ++ ++ RS+ PGE VG+LAAQSIGEP+TQMTLNTFHFAG
Sbjct: 1181 KSYEKSELSLDRLRTLLQLKWQRSLCEPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEM 1240
Query: 1093 KVTSGVPRLKEILNVAK-NMKTPSLTV 1118
VT G+PRL+EIL VA N+KTP ++V
Sbjct: 1241 NVTLGIPRLREILMVASANIKTPMMSV 1267
Score = 73.9 bits (180), Expect = 2e-12
Identities = 49/152 (32%), Positives = 82/152 (53%), Gaps = 3/152 (1%)
Query: 1294 SETGEYHKVPEWVLETDGVNLSEVMTVSGV-DGSRIYTNSFIDIMNVLGIEAGRAALYRE 1352
+ET E VL T+G+NL E+ + V D R+Y+N I N GIEA R + +E
Sbjct: 1563 NETTNNKNEKELVLNTEGINLPELFKYAEVLDLRRLYSNDIHAIANTYGIEALRV-IEKE 1621
Query: 1353 VYNVIASDGSYVNYRHMALLVDVMTSQGFLMSVTRHGFNRADTGALMRCSFEETVEILFE 1412
+ +V A G V+ RH++L+ D M +G + R G R+++ L + +FE + + L +
Sbjct: 1622 IKDVFAVYGIAVDPRHLSLVADYMCFEGVYKPLNRFGI-RSNSSPLQQMTFETSFQFLKQ 1680
Query: 1413 AGAAAELDDCRGVSENVILGQMAPIGTGAFDV 1444
A D+ R S +++G++ GTG F++
Sbjct: 1681 ATMLGSHDELRSPSACLVVGKVVRGGTGLFEL 1712
Score = 66.6 bits (161), Expect = 3e-10
Identities = 35/104 (33%), Positives = 52/104 (49%), Gaps = 1/104 (0%)
Query: 10 PLRTIKEVQFGLFSPEEVRGISVAKIEFPETMDESQMKAKIGGLNDPRLGSIDRNYKCQT 69
P R ++ + FG++S EE++ +SV I P +D S GL D LG D C T
Sbjct: 8 PWRRLQGISFGMYSAEELKKLSVKSITNPRYLD-SLGNPSANGLYDLALGPADSKEVCST 66
Query: 70 CGEGMAECPGHFGHIELAKPVFHIGFLSKIKKVCESVCMHCGKL 113
C + + C GH GHIEL V++ K+ + C++C L
Sbjct: 67 CVQDFSNCSGHLGHIELPLTVYNPLLFDKLYLLLRGSCLNCHML 110
>SPBC4C3.05c [K] KOG0262 RNA polymerase I large subunit
Length = 1689
Score = 343 bits (881), Expect = 1e-93
Identities = 241/729 (33%), Positives = 385/729 (52%), Gaps = 90/729 (12%)
Query: 296 LQFHVATYMDNDIAGQPQAVQKSGRPIKSIRARLKGKEGRIRGNLMGKRVDFSARTVISG 355
LQ V + +D++ P + +S I+ L+ KEG R ++MGKRV+++AR+VIS
Sbjct: 437 LQHDVNSLIDSN--RNPSSGGQSRTVPPGIKQILEKKEGLFRKHMMGKRVNYAARSVISP 494
Query: 356 DPNLDLDQVGVPKSIAKTLTYPEVVTPYNIDRLTQLVRNGPNEHPGAKYVIRESGDRIDL 415
DPN++ +++GVP A LTYPE VT YN + + V NGP++ PGA ++ E G I L
Sbjct: 495 DPNIETNEIGVPPVFATKLTYPEPVTLYNFNEMRNAVINGPHKWPGASHIQNEDGTLISL 554
Query: 416 R--------------YSKRAGDIQLQYGW--------KVERHITDNDPVLFNRQPSLHKM 453
+ ++ I Y + KV RH+ + D ++ NRQP+LHK
Sbjct: 555 MPLTIEQRTALANQLLTPQSNLISSPYSYSRLINTNKKVYRHVRNGDMLILNRQPTLHKP 614
Query: 454 SMMAHRVKVMP-YSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAELSQLCAVPLQIV 512
SMMAH+ +++P T R++ + + YNADFDGDEMN+H PQS R+E + Q +
Sbjct: 615 SMMAHKARILPGEKTIRMHYANCNSYNADFDGDEMNMHFPQSTNARSEAQFIANTDSQYL 674
Query: 513 SPQSNKPCMGIVQDTLCGIRKMTLRDTFIELDQVLNMLYWI--PDWDGI---IPT--PAI 565
P S P G++QD + +T +DTF D+ +L+ PD G+ I T PAI
Sbjct: 675 VPTSGDPLRGLIQDHVVMGVWLTCKDTFYTRDEYQQLLFQALKPDETGMYGRIKTLPPAI 734
Query: 566 LKPVPLWSGKQVLSMAIPN-------GIHLQ-RFDDGTTFLSP--KDNGMLIIDGKIIFG 615
+P W+GKQ++S + N G++L+ + + SP ++ +L DG+++ G
Sbjct: 735 QRPGIYWTGKQIISSVLLNLKPSDRPGLNLKSKAKVPGKYWSPDSEEGSVLFDDGELLCG 794
Query: 616 VVDKKTVGSSSGGLIHVVTREKGPEICARLFSNIQKVVNYWLLHNGFSIGIGDTIADEK- 674
++DK + G+S+ GL+H V GP+I RL S + ++ + GF+ + D DE+
Sbjct: 795 ILDKSSFGASAFGLVHSVHELYGPDIAGRLLSVLSRLFTAYAQMRGFTCRMDDLRLDEQG 854
Query: 675 --TMREITE-----AIAVAKKKVEDVTKEAQANLLTAKHGMTLRESFEDNVVRYLNEARD 727
R++ E + A + V ++ ++ LL A L E + D+ +A
Sbjct: 855 DNWRRQLLENGKSFGLEAASEYV-GLSTDSPIALLNA----NLEEVYRDDEKLQGLDAAM 909
Query: 728 KA---GRSAEVNLKDL----------NNVKQMVSAGSKGSFINIAQMSACVGQQSVEGKR 774
K G ++ + K + N+++ M +G+KGS +N++Q+S +GQQ +EG+R
Sbjct: 910 KGKMNGLTSSIINKCIPDGLLTKFPYNHMQTMTVSGAKGSNVNVSQISCLLGQQELEGRR 969
Query: 775 IAFGFADRTLPHFSKDDYSPESKGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTAET 834
+ + ++LP F + S +S GF+ + +L G+ PQE++FH M GREGLIDTAVKT+ +
Sbjct: 970 VPLMVSGKSLPSFVPYETSAKSGGFIASRFLTGIAPQEYYFHCMAGREGLIDTAVKTSRS 1029
Query: 835 GYIQRRLVKALEDIMVHYDGTTRNSLGNVIQFIYGEDGMDAAH----------------- 877
GY+QR L+K LE + V YD T R+S G+++QF YGED +D
Sbjct: 1030 GYLQRCLMKHLEGLCVQYDHTVRDSDGSIVQFHYGEDSLDVTKQKHLTQFEFSAKNYKSL 1089
Query: 878 IEKQSIDTIPGS-DSAFERRYRIDLLNEEYALDPSLLE-SGSEIIG--DSKLQLLLNDEY 933
I+K + ++ + DS Y L + Y DP L + S +G K Q + DEY
Sbjct: 1090 IQKYKVKSVLSAVDSETASSYAKKALKKPYKYDPVLDKYPPSRYLGSVSEKFQRAV-DEY 1148
Query: 934 KQLVDDRQI 942
Q D+ I
Sbjct: 1149 TQKNPDKLI 1157
Score = 148 bits (373), Expect = 8e-35
Identities = 139/520 (26%), Positives = 233/520 (44%), Gaps = 112/520 (21%)
Query: 1032 IEEYRLNRQTFDWVLNNIEAQFLRSIVHPGEMVGVLAAQSIGEPATQMTLNTFHFAGVAS 1091
+++ LN F ++ + ++ +S+V PGE VGVLA+QSIGEP+TQMTLNTFHFAG +
Sbjct: 1165 LDDSLLNESKFKALM---QLRYQQSLVDPGESVGVLASQSIGEPSTQMTLNTFHFAGFGA 1221
Query: 1092 KKVTSGVPRLKEILNVAK-NMKTPSLTVYLDPEYAADQEKA--KEIRSAIEHTTLKSVTV 1148
K VT G+PRL+EI+ A N++TP++T+ L+ + + A KE+ + ++ V V
Sbjct: 1222 KNVTLGIPRLREIIMTASANIQTPTMTLRLNDGVSDKRASAFCKEVNKLVLSEVVRQVRV 1281
Query: 1149 ASEIY---YDPDPRSTVIEDD---EEIIQLHFSLMDEETEKSLDYQSPWLLR-------L 1195
+I D ++ I D + Q + ++ EE E + + +L
Sbjct: 1282 TEKISGQGSDEQSKTYAIRLDLYSRDEYQDEYGVLQEEIESTFSNRFLKILNRIIKSYLA 1341
Query: 1196 ELDRAAMTDKDLTMGQVGEKIK----------------------ETFKNDLFVIWSE--- 1230
+ + KD T+ +VG+ +K N+ V S+
Sbjct: 1342 KSKQRKSGGKDDTVPEVGQALKPLEDIDEAPIEGRAQEALEDEDNDATNEKMVSRSKQHA 1401
Query: 1231 -----DNAEKLIIRCRVIRDPKTLDADVEAEEDHMLKKIEN-------SMLEK------- 1271
D A+K+ +R ++ K D +++ EED K E+ +LEK
Sbjct: 1402 SYEGPDEADKVALR-QLKGSNKVEDVNMDEEEDEGFKSDESVSDFKERKLLEKQNTVSIS 1460
Query: 1272 ----ITLRGVEDI---------------------------TRVVMMKYDRKVPSE----- 1295
+ L+ ++I +++M+ K SE
Sbjct: 1461 ERRELQLKTAKEILSNCKHLDFDYVNGEWATVELVFPINTEKLLMVSLVEKACSETVIHE 1520
Query: 1296 ----TGEYHKVPEWVLE------TDGVNLSEVMT-VSGVDGSRIYTNSFIDIMNVLGIEA 1344
T + K P+ L+ T+GVNL + + + + IYTN I+ + G+EA
Sbjct: 1521 IPGITRCFSKPPDSALDTVPKVITEGVNLKAIWEFYNEISMNDIYTNDIAAILRIYGVEA 1580
Query: 1345 GRAALYREVYNVIASDGSYVNYRHMALLVDVMTSQGFLMSVTRHGFNRADTGALMRCSFE 1404
R A+ EV +V G V+ RH++L+ D MT +G + R G +T + SFE
Sbjct: 1581 ARNAIVHEVSSVFGVYGIAVDPRHLSLIADYMTFEGGYKAFNRMGI-EYNTSPFAKMSFE 1639
Query: 1405 ETVEILFEAGAAAELDDCRGVSENVILGQMAPIGTGAFDV 1444
T L EA ++DD S +++G++ GTG+FD+
Sbjct: 1640 TTCHFLTEAALRGDVDDLSNPSSRLVVGRVGNFGTGSFDI 1679
Score = 72.0 bits (175), Expect = 8e-12
Identities = 38/97 (39%), Positives = 52/97 (53%), Gaps = 1/97 (1%)
Query: 14 IKEVQFGLFSPEEVRGISVAKIEFPETMDESQMKAKIGGLNDPRLGSIDRNYKCQTCGEG 73
IK V+FG++ ++V ISV +I P +D GGL D LG +N C TC
Sbjct: 11 IKSVKFGIYDVDDVEKISVKQIVNPVLLDNLNHPTN-GGLYDLALGPYLKNSVCATCHLD 69
Query: 74 MAECPGHFGHIELAKPVFHIGFLSKIKKVCESVCMHC 110
CPGHFGHI L P +H F S++ + S C++C
Sbjct: 70 ERYCPGHFGHIVLPIPAYHPLFFSQMYNLLRSTCLYC 106
>CE22157 [K] KOG0262 RNA polymerase I large subunit
Length = 1737
Score = 339 bits (869), Expect = 3e-92
Identities = 208/622 (33%), Positives = 329/622 (52%), Gaps = 56/622 (9%)
Query: 322 IKSIRARLKGKEGRIRGNLMGKRVDFSARTVISGDPNLDLDQVGVPKSIAKTLTYPEVVT 381
I I+ L+ K+G R ++MGKRV+F+ R+VI+ DP LD+D++G+P AK LT+ E V
Sbjct: 453 IAGIKQILEKKQGLFRMHMMGKRVNFACRSVITPDPYLDIDEIGIPDIFAKKLTFTEPVN 512
Query: 382 PYNIDRLTQLVRNGPNEHPGAKYVIRESGDRIDL--------------RYSKRAGDIQLQ 427
+N++ + L+R GP++HPGA + + SG + L + A L+
Sbjct: 513 AFNVNEMKGLLRQGPHQHPGANFFVEPSGKKTMLGDKPEEKKRRMQMAKTLNAATTENLR 572
Query: 428 YGWKVERHITDNDPVLFNRQPSLHKMSMMAHRVKVMP-YSTFRLNLSVTSPYNADFDGDE 486
KV RH+ + D ++ NRQPSLHK S++ HR +V+ R+N + YNADFDGDE
Sbjct: 573 QTPKVLRHMKNGDMIMMNRQPSLHKPSILGHRARVLTGQRALRMNYAPCKAYNADFDGDE 632
Query: 487 MNLHVPQSEETRAELSQLCAVPLQIVSPQSNKPCMGIVQDTLCGIRKMTLRDTFIELDQV 546
MN H+ QS + E+ ++ V + P+ P +G++QD + +++RD F+ +
Sbjct: 633 MNGHLVQSHIAQTEVREIANVGSNFLVPKDATPLLGLIQDHVVSGVLLSVRDRFLNKEDF 692
Query: 547 LNM-LYWIPDWDGII--PTPAILKPVPLWSGKQVLSM----AIPNGIHLQRFDDGTT--- 596
+++ L + I P P IL P LW+GKQV++ IP+G L D
Sbjct: 693 MHLVLASFAQYSKRIEIPPPTILYPKRLWTGKQVITTIVKNCIPDGKPLINLDGKAKTPL 752
Query: 597 -------FLSPK----DNGMLIIDGKIIFGVVDKKTVGSSSGGLIHVVTREKGPEICARL 645
F +P+ ++ ++ G+++ GV+DK G++ GL H G +L
Sbjct: 753 SCWIVPGFDAPQFDMSESHVVFRQGELLVGVLDKAHFGATQFGLAHCAFELYGHRCGVQL 812
Query: 646 FSNIQKVVNYWLLHNGFSIGIGDTI----ADEKTMREITEAIAVAKKKVE---------- 691
S ++ +L +GF++G+ D + AD K + E+ + + V+
Sbjct: 813 LSCFSRLFTTYLQFHGFTLGVADILVVKDADGKRKEAVMESRTIGNQVVKTAFGLPDTAT 872
Query: 692 --DVTKEAQANLLTAKHGMT----LRESFEDNVVRYLNEARDKAGRSAEVNLKDLNNVKQ 745
++ + A + T L + + +Y + + + L N ++
Sbjct: 873 PAEIKRTLAATYCNPRGQGTDVKMLDFGMKQGIAKYNDAITKSCVPTGLLRLFPQNALQL 932
Query: 746 MVSAGSKGSFINIAQMSACVGQQSVEGKRIAFGFADRTLPHFSKDDYSPESKGFVENSYL 805
M+ +G+KGS +N Q+S C+GQ +EGKR+A A RTLP F D SP + G+++ +L
Sbjct: 933 MIQSGAKGSAVNAIQISGCLGQIELEGKRMAVTIAGRTLPSFRCFDPSPRAGGYIDQRFL 992
Query: 806 RGLTPQEFFFHAMGGREGLIDTAVKTAETGYIQRRLVKALEDIMVHYDGTTRNSLGNVIQ 865
G+ PQE FFH M GREGLIDTAVKT+ +GY+QR ++K LE I VHYD T R+ G+VIQ
Sbjct: 993 TGMNPQELFFHTMAGREGLIDTAVKTSRSGYLQRCIIKHLEGIRVHYDSTVRDHDGSVIQ 1052
Query: 866 FIYGEDGMDAAHIEKQSIDTIP 887
F YGEDGMD + T+P
Sbjct: 1053 FRYGEDGMDTTKATFLNKKTMP 1074
Score = 84.3 bits (207), Expect = 2e-15
Identities = 45/94 (47%), Positives = 63/94 (66%), Gaps = 3/94 (3%)
Query: 1054 LRSIVHPGEMVGVLAAQSIGEPATQMTLNTFHFAGVASKKVTSGVPRLKEILNVA-KNMK 1112
+RS+ PGE VG+LAAQSIGEP+TQMTLNTFHFAG VT G+PRL+EIL A K++
Sbjct: 1225 MRSLADPGENVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMTASKSIA 1284
Query: 1113 TPSLTVYLDPEYAADQEKAKEIRSAIEHTTLKSV 1146
TPS ++ + +++ I+ ++ LK +
Sbjct: 1285 TPSASIAVIA--GTSRDRIDSIKRELDRVYLKQL 1316
Score = 73.6 bits (179), Expect = 3e-12
Identities = 47/143 (32%), Positives = 76/143 (52%), Gaps = 2/143 (1%)
Query: 1306 VLETDGVNLSEVMTVSGV-DGSRIYTNSFIDIMNVLGIEAGRAALYREVYNVIASDGSYV 1364
+L+T GVNL+ + V D + +Y+N I+ G+EA A+ E+ NV A G V
Sbjct: 1572 ILQTQGVNLAAFFKHADVLDVNSVYSNDLNLILENYGVEACSKAITTEMNNVFAVYGIEV 1631
Query: 1365 NYRHMALLVDVMTSQGFLMSVTRHGFNRADTGALMRCSFEETVEILFEAGAAAELDDCRG 1424
+ RH++L D MT G + R G + + L + +FE T+ L EA E D+
Sbjct: 1632 SKRHLSLTADYMTFTGQIQPFNR-GAMSSSSSPLQKMTFETTMAFLREALLHGEEDNVNS 1690
Query: 1425 VSENVILGQMAPIGTGAFDVMID 1447
S +++G + GTG+FD+++D
Sbjct: 1691 PSARLVMGALPRGGTGSFDLLLD 1713
Score = 63.9 bits (154), Expect = 2e-09
Identities = 35/92 (38%), Positives = 47/92 (51%), Gaps = 1/92 (1%)
Query: 22 FSPEEVRGISVAKIEFPETMDESQMKAKIGGLNDPRLGSIDRNYKCQTCGEGMAECPGHF 81
+ P E+ +SV KI +T DE GGL DP LG + C TC + CPGH
Sbjct: 23 YFPHEIDKLSVLKITQTKTFDEVGHPIA-GGLYDPILGPDNTFDMCMTCNQYERHCPGHM 81
Query: 82 GHIELAKPVFHIGFLSKIKKVCESVCMHCGKL 113
GHI+LA PVF+ + + C+HC +L
Sbjct: 82 GHIQLAVPVFNPLLFQFTYNLLKGSCVHCHRL 113
>7293125 [K] KOG0261 RNA polymerase III large subunit
Length = 1259
Score = 339 bits (869), Expect = 3e-92
Identities = 226/608 (37%), Positives = 332/608 (54%), Gaps = 38/608 (6%)
Query: 7 SSAPLRTIKEVQFGLFSPEEVRGISVAKIEFPETMDESQMKAKIGGLNDPRLGSIDRNYK 66
+SA + I VQFG+ +E++ ++ +I + + ++Q + G+ D R+G ++
Sbjct: 8 ASALNKKISHVQFGISGADEIQQEALVRI-ISKNLYQAQRQPVPYGVLDRRMGISTKDAM 66
Query: 67 CQTCGEGMAECPGHFGHIELAKPVFHIGFLSKIKKVCESVCMHCGKLLLDEYNEQMRQAI 126
C+TCG+G+ EC GHFG+++LA PVFHIG + + +C C ++L + Q+ +
Sbjct: 67 CETCGQGLNECIGHFGYLDLALPVFHIGHFRSTINILQMICKVCAHVMLKPEDRQLYEK- 125
Query: 127 KIKDPK-----RRFNAVWTLCKAKMVCETEVPSPDDPTVFLSRGGC----------GHIQ 171
K+ +P ++ V L KAK V T+ P P + +G G
Sbjct: 126 KLHNPNFSYLGKKALHVQMLAKAKKV--TKCPHCGSPNGGVKKGPGLLKILHDPYKGRKM 183
Query: 172 PSIRKDGLSLV---GTWKKDKNADDSDQPEKRIISAEEILNVFKHISPEDGWRLGFNEDF 228
S+ ++ + +D N+ + ++ +L++F+ I D LG
Sbjct: 184 DSLFTSNMNEMLRSTQTNRDLNSTLGNYSTAEELTPLMVLDLFEQIPQRDVALLGMCSHD 243
Query: 229 SRPEWMILTXXXXXXXXXXXSISFNESQRG--EDDLTYKLGDILKANINVQKLEINGSPQ 286
+ P+ +I+T S+ +E + G EDDLT K +IL N +Q+ G
Sbjct: 244 AHPKHLIVTRVFVPPACIRPSV-LSEVKAGTTEDDLTMKQSEILLINDVIQRHMATGGKI 302
Query: 287 HVIQESESLLQFHVATYMDNDIAGQP--QAVQKSGRPIKSIRARLKGKEGRIRGNLMGKR 344
+I E LQ HVA Y ++I+G P A +K+ R I RLKGK+GR R NL GKR
Sbjct: 303 ELIHEDWDFLQLHVALYFHSEISGIPINMAPKKTTRGIVQ---RLKGKQGRFRCNLSGKR 359
Query: 345 VDFSARTVISGDPNLDLDQVGVPKSIAKTLTYPEVVTPYNIDRLTQLVRNGPNEHPGAKY 404
VDFS RTVIS DPNL ++QVGVP +AK LTYPE V P NI + +LVRNGP+ HPGA Y
Sbjct: 360 VDFSGRTVISPDPNLMINQVGVPVRVAKILTYPERVNPANIRHMRELVRNGPSMHPGANY 419
Query: 405 VI-RESGDRIDLRYSKRAGDIQ-LQYGWKVERHITDNDPVLFNRQPSLHKMSMMAHRVKV 462
V R S + L Y R Q L+ G VERH+ D D VLFNRQPSLHKMS+M HR KV
Sbjct: 420 VQQRGSSFKKYLAYGNREKVAQELKCGDVVERHLRDGDIVLFNRQPSLHKMSIMCHRAKV 479
Query: 463 MPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAELSQLCAVPLQIVSPQSNKPCMG 522
P TFR N +PYNADFDGDEMNLH+PQ+EE RAE L +V+P++ + +
Sbjct: 480 QPQRTFRFNECACTPYNADFDGDEMNLHLPQTEEARAEALILMGNQSNLVTPKNGEILIA 539
Query: 523 IVQDTLCGIRKMTLRDTFIELDQVLNM-LYWIPDWDGI----IPTPAILKPVPLWSGKQV 577
QD + G +T ++ F+ ++ + + ++ + D +P PA+LKP LW+GKQ+
Sbjct: 540 ATQDFITGGYLLTQKEVFLTKEEAMQLAACFLANEDSTMHIKLPPPALLKPRRLWTGKQM 599
Query: 578 LSMAI-PN 584
S+ + PN
Sbjct: 600 FSLLMRPN 607
Score = 290 bits (741), Expect = 2e-77
Identities = 224/746 (30%), Positives = 346/746 (46%), Gaps = 129/746 (17%)
Query: 708 MTLRESFEDNVVRYLNEARDKAGRSAEVNLKDLNNVKQMVSAGSKGSFINIAQMSACVGQ 767
M +E+ E ++R L+ R++A ++ L N+ M +GSKGS INI+QM ACVGQ
Sbjct: 616 MVNKETLESVMLRELSAIREQAAKTCFAELHPTNSALIMALSGSKGSNINISQMIACVGQ 675
Query: 768 QSVEGKRIAFGFADRTLPHFSKDDYSPESKGFVENSYLRGLTPQEFFFHAMGGREGLIDT 827
Q++ GKR+ GF +R LPHF + P ++GFV+NS+ GLTP EFFFH M GREGL+DT
Sbjct: 676 QAISGKRVPNGFENRALPHFERHSAIPAARGFVQNSFYSGLTPTEFFFHTMAGREGLVDT 735
Query: 828 AVKTAETGYIQRRLVKALEDIMVHYDGTTRNSLGNVIQFIYGEDGMDAAHIEKQS--IDT 885
AVKTAETGY+QRRLVK LED++VHYDGT RN++ ++ IYG DG+D +E ++ +D
Sbjct: 736 AVKTAETGYLQRRLVKCLEDLVVHYDGTVRNAVNEMVDTIYGGDGLDPVSMETRNKPVDL 795
Query: 886 IPGSDSAFERRYRIDLLNEEYALDPSLLESGSEIIGDSKLQLLLNDEYKQLVDDRQILRR 945
+ ++ D L ++ +E + ++ LL E+ + DD
Sbjct: 796 V----------HQYDNLRAQHPQGKD-RPLNAEEMSEALETLLRTPEFAEARDD------ 838
Query: 946 VFVDGEHNWPLPVNIKRIIQNSQQTFRIDQTKPTDLTIEDVISGVRKLQEKLLVVRGKSD 1005
F++D + T+ I ++K EK + D
Sbjct: 839 -------------------------FKLDVRNHIN-TVSKRIGQLQKRYEKCI------D 866
Query: 1006 ILKEAQQNAITLFCCLLRSRLA--TRRVIEEYRLNRQTFDWVLNNIEAQFLRSIVHPGEM 1063
+ + + CL +L RR+ + Y + I AQ SI PG
Sbjct: 867 LCHQIE--------CLTTEQLLQFVRRINDRYNRAVTEPGTAVGAIAAQ---SIGEPGTQ 915
Query: 1064 VGVLAAQSIGEPATQMTLNTFHFAGVASKKVTSGVPRLKEILNVAKNMKTPSLTVYLDPE 1123
+ + G + +T GVPR+ EI+N K + TP +T L E
Sbjct: 916 MTLKTFHFAGVASMNIT---------------QGVPRIVEIINATKTISTPIITAEL--E 958
Query: 1124 YAADQEKAKEIRSAIEHTTLKSVTVASEIYYDPDPRSTVIEDDEEIIQLHFSLMDEETEK 1183
E A+++++ IE TTL ++ E+ P I D I+L
Sbjct: 959 NCHSMEFARQVKARIEKTTLAELSSYVEVVCGPYSCYLAIGVDMARIKL----------- 1007
Query: 1184 SLDYQSPWLLRLELDRAAMTDKDLTMGQVGEKIKETFKNDLFVIWSEDNAEKLIIRCRVI 1243
L ++LD + M ++K T + V+ S+ V+
Sbjct: 1008 -------LGLHIDLDTIVFSILKSRM-----RVKPT---QVEVVASQSRI--------VV 1044
Query: 1244 RDPKTLDADVEAEEDHMLKKIENSMLEKITLRGVEDITRVVMMKYDRKVPSETGEYHKVP 1303
R T + + AE + ++N + + G+ +I R V+ D + P P
Sbjct: 1045 RVEATRTSTINAELARLALSLQN-----VVVAGLPNINRAVIAVDDARQP---------P 1090
Query: 1304 EWVLETDGVNLSEVMTVSGVDGSRIYTNSFIDIMNVLGIEAGRAALYREVYNVIASDGSY 1363
+ L +G L +V+ GV G R +N+ +I LGIEA R + E+ V+ G
Sbjct: 1091 TYKLCIEGYGLRDVIATYGVVGKRTRSNNICEIYQTLGIEAARTIIMSEITEVMEGHGMS 1150
Query: 1364 VNYRHMALLVDVMTSQGFLMSVTRHGFNRADTGALMRCSFEETVEILFEAGAAAELDDCR 1423
V++RH+ LL MT++G ++ +TRHG + SFE+T + LF+A + D
Sbjct: 1151 VDWRHIMLLASQMTARGEVLGITRHGLAKMRESVFNLASFEKTADHLFDAAYYGQTDAIN 1210
Query: 1424 GVSENVILGQMAPIGTGAFDVMIDDE 1449
GVSE +ILG A IGTG F ++ E
Sbjct: 1211 GVSERIILGMPACIGTGIFKLLQQHE 1236
>At3g57660 [K] KOG0262 RNA polymerase I large subunit
Length = 1670
Score = 335 bits (858), Expect = 5e-91
Identities = 248/846 (29%), Positives = 396/846 (46%), Gaps = 133/846 (15%)
Query: 191 ADDSDQPEKRIISAEEILNVFKHISPEDGWRLGFNEDFSRPEWMILTXXXXXXXXXXXSI 250
A+ + KR + E+ N+ KH+ + F D W + S+
Sbjct: 291 AEFEEHNSKRDLLPSEVRNILKHLWQNEHEFCSFIGDL----WQSGSEKIDYSMFFLESV 346
Query: 251 -----SFNESQRGEDDL-----TYKLGDILKANINVQKLEINGSPQHVIQESESLLQFHV 300
F G D + T L ++++N N+ + + + + +S+ + ++
Sbjct: 347 LVPPTKFRPPTTGGDSVMEHPQTVGLNKVIESN-NI----LGNACTNKLDQSKVIFRWRN 401
Query: 301 ATYMDNDIAGQPQAVQKSGRPIKSIRARLKGKEGRIRGNLMGKRVDFSARTVISGDPNLD 360
N + A +S R I L+ KEG R +MGKRV+ + R+VIS DP +
Sbjct: 402 LQESVNVLFDSKTATVQSQRDSSGICQLLEKKEGLFRQKMMGKRVNHACRSVISPDPYIA 461
Query: 361 LDQVGVPKSIAKTLTYPEVVTPYNIDRLTQLVRNGPNEHPGA----------KYVIRESG 410
++ +G+P A LTYPE VTP+N+++L + + NGP+ HPGA K E
Sbjct: 462 VNDIGIPPCFALKLTYPERVTPWNVEKLREAIINGPDIHPGATHYSDKSSTMKLPSTEKA 521
Query: 411 DRIDLR--YSKRAGDIQLQ-------YGWKVERHITDNDPVLFNRQPSLHKMSMMAHRVK 461
R R S R +L G V RH+ D D VL NRQP+LHK S+MAH+V+
Sbjct: 522 RRAIARKLLSSRGATTELGKTCDINFEGKTVHRHMRDGDIVLVNRQPTLHKPSLMAHKVR 581
Query: 462 VMP-YSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAELSQLCAVPLQIVSPQSNKPC 520
V+ T RL+ + S YNADFDGDEMN+H PQ E +RAE + Q P + +P
Sbjct: 582 VLKGEKTLRLHYANCSTYNADFDGDEMNVHFPQDEISRAEAYNIVNANNQYARPSNGEPL 641
Query: 521 MGIVQDTLCGIRKMTLRDTFIELDQVLNMLY----------------------WIPDWDG 558
++QD + +T RDTF++ D +L+ D +
Sbjct: 642 RALIQDHIVSSVLLTKRDTFLDKDHFNQLLFSSGVTDMVLSTFSGRSGKKVMVSASDAEL 701
Query: 559 IIPTPAILKPVPLWSGKQVLSMAI-------------------------------PNGIH 587
+ TPAILKPVPLW+GKQV++ + PN
Sbjct: 702 LTVTPAILKPVPLWTGKQVITAVLNQITKGHPPFTVEKATKLPVDFFKCRSREVKPNSGD 761
Query: 588 L--QRFDDGTTFLSPKDNGMLIIDGKIIFGVVDKKTVGSSSGGLIHVVTREKGPEICARL 645
L ++ D + + ++ + I + + GV+DK + GL+H V G L
Sbjct: 762 LTKKKEIDESWKQNLNEDKLHIRKNEFVCGVIDKAQF--ADYGLVHTVHELYGSNAAGNL 819
Query: 646 FSNIQKVVNYWLLHNGFSIGIGDTI----ADEKTMREITEAIAVAKK------------K 689
S ++ +L +GF+ G+ D I DE+ +++ E V ++ +
Sbjct: 820 LSVFSRLFTVFLQTHGFTCGVDDLIILKDMDEERTKQLQECENVGERVLRKTFGIDVDVQ 879
Query: 690 VEDVTKEAQANLLTAKHGMTLRESFEDNVVRYLNEARDKAGRS-----AEVNLKDLNNVK 744
++ ++ + + G + S + ++V YLN+ K + + N +
Sbjct: 880 IDPQDMRSRIERILYEDGESALASLDRSIVNYLNQCSSKGVMNDLLSDGLLKTPGRNCIS 939
Query: 745 QMVSAGSKGSFINIAQMSACVGQQSVEGKRIAFGFADRTLPHFSKDDYSPESKGFVENSY 804
M +G+KGS +N Q+S+ +GQQ +EGKR+ + +TLP F D+SP + GF+ + +
Sbjct: 940 LMTISGAKGSKVNFQQISSHLGQQDLEGKRVPRMVSGKTLPCFHPWDWSPRAGGFISDRF 999
Query: 805 LRGLTPQEFFFHAMGGREGLIDTAVKTAETGYIQRRLVKALEDIMVHYDGTTRNSLGNVI 864
L GL PQE++FH M GREGL+DTAVKT+ +GY+QR L+K LE + V+YD T R++ G++I
Sbjct: 1000 LSGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLMKNLESLKVNYDCTVRDADGSII 1059
Query: 865 QFIYGEDGMDAAHIEKQSIDTIPGSDSAFERRYRIDLLNEEYAL---DPSLLESGSEIIG 921
QF YGEDG+D S+F +++ +N++ L +L S I
Sbjct: 1060 QFQYGEDGVDVHR-------------SSFIEKFKELTINQDMVLQKCSEDMLSGASSYIS 1106
Query: 922 DSKLQL 927
D + L
Sbjct: 1107 DLPISL 1112
Score = 89.7 bits (221), Expect = 4e-17
Identities = 55/130 (42%), Positives = 77/130 (58%), Gaps = 8/130 (6%)
Query: 1045 VLNNIEAQFLRSIVHPGEMVGVLAAQSIGEPATQMTLNTFHFAGVASKKVTSGVPRLKEI 1104
+L ++++F S+ PGE VGVLAAQS+GEP+TQMTLNTFH AG VT G+PRL+EI
Sbjct: 1139 LLKLVKSKFFASLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEI 1198
Query: 1105 L-NVAKNMKTPSLTVYLDPEYAADQEKAKEIRSAIEHTTLKSVTVASEIYYDPDPRSTVI 1163
L A N+KTP +T L +E A +I + T+ + + E+ P TV
Sbjct: 1199 LMTAAANIKTPIMTCPL--LKGKTKEDANDITDRLRKITVADIIKSMELSVVP---YTVY 1253
Query: 1164 EDDEEIIQLH 1173
E+ E+ +H
Sbjct: 1254 EN--EVCSIH 1261
Score = 79.7 bits (195), Expect = 4e-14
Identities = 60/203 (29%), Positives = 93/203 (45%), Gaps = 4/203 (1%)
Query: 1245 DPKTLDADVEAEEDHMLKKIENS-MLEKITLRGVEDITRVVMMKYDRKVPSETGEYHKVP 1303
DP L A + A++ I+NS +E+ T+ D +V+ + K E K
Sbjct: 1465 DPHILLAQI-AQQTAQKVYIQNSGKIERCTVANCGD-PQVIYHGDNPKERREISNDEKKA 1522
Query: 1304 EWVLETDGVNLSEVMTVSG-VDGSRIYTNSFIDIMNVLGIEAGRAALYREVYNVIASDGS 1362
L GV+ + +D +Y+NS D++N+ G+EA R + RE+ +V S G
Sbjct: 1523 SPALHASGVDFPALWEFQDKLDVRYLYSNSIHDMLNIFGVEAARETIIREINHVFKSYGI 1582
Query: 1363 YVNYRHMALLVDVMTSQGFLMSVTRHGFNRADTGALMRCSFEETVEILFEAGAAAELDDC 1422
V+ RH+ L+ D MT G ++R G T R +FE + + +A E D
Sbjct: 1583 SVSIRHLNLIADYMTFSGGYRPMSRMGGIAESTSPFCRMTFETATKFIVQAATYGEKDTL 1642
Query: 1423 RGVSENVILGQMAPIGTGAFDVM 1445
S + LG A GTG FD+M
Sbjct: 1643 ETPSARICLGLPALSGTGCFDLM 1665
Score = 60.8 bits (146), Expect = 2e-08
Identities = 54/234 (23%), Positives = 96/234 (40%), Gaps = 32/234 (13%)
Query: 4 FPYSSAPLRTIKEVQFGLFSPEEVRGISVAKIEFPETMDESQMKAKIGGLNDPRLGSIDR 63
FP ++ + ++ V+F + ++VR S K+ P + ++ GGL D +LG D
Sbjct: 19 FPMGAS--QVVESVRFSFMTEQDVRKHSFLKVTSP-ILHDNVGNPFPGGLYDLKLGPKDD 75
Query: 64 NYKCQTCGEGMAECPGHFGHIELAKPVFHIGFLSKIKKVCESVCMHCGKLLLDEYNEQMR 123
C +CG+ CPGH GHIEL P++H + + + C C +
Sbjct: 76 KQACNSCGQLKLACPGHCGHIELVFPIYHPLLFNLLFNFLQRACFFCHHFM--------- 126
Query: 124 QAIKIKDPKRRFNAVWTLCKAKMVCETEVPSPDDPTVFLSRGGCGHIQPSIRKDGLSLVG 183
K +D +R + + + K +V ++ S + PT + + V
Sbjct: 127 --AKPEDVERAVSQLKLIIKGDIVSAKQLES-NTPT-----------KSKSSDESCESVV 172
Query: 184 TWKKDKNADDSDQPEKRIISAE-----EILNVFKHISPEDGWRL-GFNEDFSRP 231
T + +DSD ++R S + +L F +S + R G N +P
Sbjct: 173 TTDSSEECEDSDVEDQRWTSLQFAEVTAVLKNFMRLSSKSCSRCKGINPKLEKP 226
>At1g63020_1 [K] KOG0260 RNA polymerase II large subunit
Length = 1316
Score = 197 bits (501), Expect = 1e-49
Identities = 171/581 (29%), Positives = 280/581 (47%), Gaps = 74/581 (12%)
Query: 340 LMGKRVDFSARTVISGDPNLDLDQVGVPKSIAKTLTYPEVVTPYNIDRL-TQLVRNGPNE 398
L+GKR D + RTV+ GDP+L L+++G+P+SIAK L E + N +RL T V P
Sbjct: 313 LLGKRSDHTFRTVVVGDPSLKLNEIGIPESIAKRLQVSEHLNQCNKERLVTSFV---PTL 369
Query: 399 HPGAKYVIRESGDRIDLRYSKRAGDIQLQYGWKVERHITDNDPVLFNRQPSLHKMSMMAH 458
+ +R GDR+ + + D LQ G K+ R + D D VL NR PS+H+ S++A
Sbjct: 370 LDNKEMHVRR-GDRL---VAIQVND--LQTGDKIFRSLMDGDTVLMNRPPSIHQHSLIAM 423
Query: 459 RVKVMP-YSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAELSQLCAVPLQIVSPQSN 517
V+++P S LN P+ DFDGD ++ +VPQS + + EL +L A+ Q+++ Q+
Sbjct: 424 TVRILPTTSVVSLNPICCLPFRGDFDGDCLHGYVPQSIQAKVELDELVALDKQLINRQNG 483
Query: 518 KPCMGIVQDTLCGIRKMTL-RDTFIELDQVLNMLYWIPDWDGIIPTPAILK-----PVPL 571
+ + + QD+L + + ++ ++ Q+ + + P +P PAI+K P
Sbjct: 484 RNLLSLGQDSLTAAYLVNVEKNCYLNRAQMQQLQMYCPFQ---LPPPAIIKASPSSTEPQ 540
Query: 572 WSGKQVLSMAIPNGIHLQRFDDGTTFLSPKDNGMLIIDGKIIFGVVDKKTVGSSSGGLIH 631
W+G Q+ M P G FD + P +N +++ +G+++ + G I
Sbjct: 541 WTGMQLFGMLFPPG-----FD----YTYPLNN-VVVSNGELLSFSEGSAWLRDGEGNFIE 590
Query: 632 VVTREKGPEICARLFSNIQKVVNYWLLHNGFSIGIGDTI--ADEKTMREITEAIAVAKKK 689
+ + ++ ++S Q++++ WLL G S+ + D +D ++ + +TE I+ ++
Sbjct: 591 RLLKHDKGKVLDIIYS-AQEMLSQWLLMRGLSVSLADLYLSSDLQSRKNLTEEISYGLRE 649
Query: 690 VEDVTKEAQANL-----LTAKHGMTLRESFEDNVVRYLNEARDKAGRS--AEVNLKDL-- 740
E V + Q + A +G E ++ R+ E + A S A KD
Sbjct: 650 AEQVCNKQQLMVESWRDFLAVNGEDKEEDSVSDLARFCYERQKSATLSELAVSAFKDAYR 709
Query: 741 -------------NNVKQMVSAGSKGSFINIAQMSACVGQQSVEGKRIAFGFA------- 780
N+ M AGSKG+ + Q S C+G Q+ ++FGF
Sbjct: 710 DVQALAYRYGDQSNSFLIMSKAGSKGNIGKLVQHSMCIGLQN-SAVSLSFGFPRELTCAA 768
Query: 781 --DRTLP---HFSKDDYSPES---KGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTA 832
D P KD + ES G +ENS+L GL P E F H++ R+
Sbjct: 769 WNDPNSPLRGAKGKDSTTTESYVPYGVIENSFLTGLNPLESFVHSVTSRDSSFSGNADL- 827
Query: 833 ETGYIQRRLVKALEDIMVHYDGTTRNSLGN-VIQFIYGEDG 872
G + RRL+ + DI YDGT RNS GN ++QF Y DG
Sbjct: 828 -PGTLSRRLMFFMRDIYAAYDGTVRNSFGNQLVQFTYETDG 867
>At2g40030 [K] KOG0260 RNA polymerase II large subunit
Length = 888
Score = 165 bits (417), Expect = 7e-40
Identities = 166/625 (26%), Positives = 283/625 (44%), Gaps = 57/625 (9%)
Query: 260 DDLTYKLGDILKANINVQKLEINGSPQHVIQESESLLQFHVA-TYMDNDIAGQPQAVQ-- 316
D +L D+LK I + K +G ++E+ F V TY+ + G +A +
Sbjct: 184 DPSRIELKDVLKKVIAI-KSSRSGETNFESHKAEASEMFRVVDTYLQ--VRGTAKAARNI 240
Query: 317 --KSGRPIKSIRARLKGKEGRIRGNLMGKRVDFSARTVISGDPNLDLDQVGVPKSIAKTL 374
+ G S + K ++R + K FS+R+VI+GD +++VG+P IA+ +
Sbjct: 241 DMRYGVSKISDSSSSKAWTEKMRTLFIRKGSGFSSRSVITGDAYRHVNEVGIPIEIAQRI 300
Query: 375 TYPEVVTPYNIDRLTQLVRNGPNEHPGAKYVIRESGDRIDLRYSKRAGDIQLQYGWKVER 434
T+ E V+ +N L +LV ++ Y + LR + G +L+ G V R
Sbjct: 301 TFEERVSVHNRGYLQKLV----DDKLCLSYT--QGSTTYSLRDGSK-GHTELKPGQVVHR 353
Query: 435 HITDNDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQS 494
+ D D V NR P+ HK S+ A RV V +T ++N + SP +ADFDGD ++L PQS
Sbjct: 354 RVMDGDVVFINRPPTTHKHSLQALRVYVHEDNTVKINPLMCSPLSADFDGDCVHLFYPQS 413
Query: 495 EETRAELSQLCAVPLQIVSPQSNKPCMGIVQDTLCGIRKMTLRDTFIELDQVLNMLYWIP 554
+AE+ +L +V Q++S + + + + D+L +R M L F++ + +
Sbjct: 414 LSAKAEVMELFSVEKQLLSSHTGQLILQMGSDSLLSLRVM-LERVFLDKATAQQLAMY-- 470
Query: 555 DWDGIIPTPAILKPV---PLWSGKQVLSMAIPNGIHLQRFDDGTTFLSPKDNGMLIIDGK 611
+P PA+ K P W+ Q+L +A P + + G FL D L+ K
Sbjct: 471 -GSLSLPPPALRKSSKSGPAWTVFQILQLAFPERLSCK----GDRFL--VDGSDLL---K 520
Query: 612 IIFGVVDKKTVGSSSGGLIHVVTREKGPEICARLFSNIQKVVNYWLLHNGFSIGIGDTIA 671
FGV +GS ++ + EKGP+ F ++Q ++ L GFS+ + D
Sbjct: 521 FDFGV---DAMGSIINEIVTSIFLEKGPKETLGFFDSLQPLLMESLFAEGFSLSLEDLSM 577
Query: 672 DEKTMREITEAIAVAKKKVEDVTKEAQANLLTAKHGMTLRESFEDNVVRYLNEARDKAGR 731
M I I + +++ L+ + + L +N + + E
Sbjct: 578 SRADMDVIHNLI------IREISPMVSRLRLSYRDELQL-----ENSIHKVKEV------ 620
Query: 732 SAEVNLKDLNNVKQMVSAGSKGSFINIAQMSACVGQQSVEGKRIAFGFADRTLPHFSKDD 791
+A LK +++ ++ S + + Q + +G Q + K+ + F K
Sbjct: 621 AANFMLKSY-SIRNLIDIKSNSAITKLVQQTGFLGLQLSDKKKFYTKTLVEDMAIFCKRK 679
Query: 792 YSPESK----GFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTAETGYIQRRLVKALED 847
Y S G V+ + GL P E H++ RE ++ ++ AE G + + L+ L D
Sbjct: 680 YGRISSSGDFGIVKGCFFHGLDPYEEMAHSIAAREVIVRSSRGLAEPGTLFKNLMAVLRD 739
Query: 848 IMVHYDGTTRNSLGN-VIQFIYGED 871
I++ DGT RN+ N VIQF YG D
Sbjct: 740 IVITNDGTVRNTCSNSVIQFKYGVD 764
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.317 0.135 0.391
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 94,018,655
Number of Sequences: 60738
Number of extensions: 4228501
Number of successful extensions: 12870
Number of sequences better than 1.0e-05: 23
Number of HSP's better than 0.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 12619
Number of HSP's gapped (non-prelim): 81
length of query: 1720
length of database: 30,389,216
effective HSP length: 120
effective length of query: 1600
effective length of database: 23,100,656
effective search space: 36961049600
effective search space used: 36961049600
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)