ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactVI1467.1 good J KOG3436 Translation, ribosomal structure and biogenesis 60S ribosomal protein L35
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactVI1467.1 517797 518132 112
(112 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YDL191w [J] KOG3436 60S ribosomal protein L35 122 8e-29
YDL136w [J] KOG3436 60S ribosomal protein L35 122 8e-29
Hs6005860 [J] KOG3436 60S ribosomal protein L35 73 7e-14
At5g02610 [J] KOG3436 60S ribosomal protein L35 73 7e-14
SPCC613.05c [J] KOG3436 60S ribosomal protein L35 72 1e-13
At2g39390 [J] KOG3436 60S ribosomal protein L35 72 1e-13
At3g09500 [J] KOG3436 60S ribosomal protein L35 70 5e-13
At3g55170 [J] KOG3436 60S ribosomal protein L35 69 8e-13
7290609 [J] KOG3436 60S ribosomal protein L35 62 1e-10
CE00450 [J] KOG3436 60S ribosomal protein L35 58 2e-09
Hs22060847 [J] KOG3436 60S ribosomal protein L35 44 5e-05
Hs17476320 [J] KOG3436 60S ribosomal protein L35 42 1e-04
Hs20539638 [J] KOG3436 60S ribosomal protein L35 39 0.001
Hs18566413 [J] KOG3436 60S ribosomal protein L35 33 0.050
ECU11g2060 [J] KOG3436 60S ribosomal protein L35 31 0.25
ECU10g0070 [J] KOG3436 60S ribosomal protein L35 31 0.25
ECU07g1820 [J] KOG3436 60S ribosomal protein L35 31 0.25
>YDL191w [J] KOG3436 60S ribosomal protein L35
Length = 120
Score = 122 bits (306), Expect = 8e-29
Identities = 66/112 (58%), Positives = 73/112 (64%)
Query: 1 MRTKSKDXXXXXXXXXXXXXXXXXXXXXSRPSLPKINTVRKNIARVLTVISQNQRQAVRE 60
+RTKSK+ SRPSLPKI TVRK+IA VLTVI++ QR+AVR+
Sbjct: 9 LRTKSKEQLASQLVDLKKELAELKVQKLSRPSLPKIKTVRKSIACVLTVINEQQREAVRQ 68
Query: 61 LYKGKKYQPKDXXXXXXXXXXXXXXXFEASQVTEKQRKKQIAFPQRKYAIKA 112
LYKGKKYQPKD FEASQVTEKQRKKQIAFPQRKYAIKA
Sbjct: 69 LYKGKKYQPKDLRAKKTRALRRALTKFEASQVTEKQRKKQIAFPQRKYAIKA 120
>YDL136w [J] KOG3436 60S ribosomal protein L35
Length = 120
Score = 122 bits (306), Expect = 8e-29
Identities = 66/112 (58%), Positives = 73/112 (64%)
Query: 1 MRTKSKDXXXXXXXXXXXXXXXXXXXXXSRPSLPKINTVRKNIARVLTVISQNQRQAVRE 60
+RTKSK+ SRPSLPKI TVRK+IA VLTVI++ QR+AVR+
Sbjct: 9 LRTKSKEQLASQLVDLKKELAELKVQKLSRPSLPKIKTVRKSIACVLTVINEQQREAVRQ 68
Query: 61 LYKGKKYQPKDXXXXXXXXXXXXXXXFEASQVTEKQRKKQIAFPQRKYAIKA 112
LYKGKKYQPKD FEASQVTEKQRKKQIAFPQRKYAIKA
Sbjct: 69 LYKGKKYQPKDLRAKKTRALRRALTKFEASQVTEKQRKKQIAFPQRKYAIKA 120
>Hs6005860 [J] KOG3436 60S ribosomal protein L35
Length = 123
Score = 72.8 bits (177), Expect = 7e-14
Identities = 37/80 (46%), Positives = 51/80 (63%)
Query: 33 LPKINTVRKNIARVLTVISQNQRQAVRELYKGKKYQPKDXXXXXXXXXXXXXXXFEASQV 92
L KI VRK+IARVLTVI+Q Q++ +R+ YKGKKY+P D E +
Sbjct: 44 LSKIRVVRKSIARVLTVINQTQKENLRKFYKGKKYKPLDLRPKKTRAMRRRLNKHEENLK 103
Query: 93 TEKQRKKQIAFPQRKYAIKA 112
T+KQ++K+ +P RKYA+KA
Sbjct: 104 TKKQQRKERLYPLRKYAVKA 123
>At5g02610 [J] KOG3436 60S ribosomal protein L35
Length = 123
Score = 72.8 bits (177), Expect = 7e-14
Identities = 39/79 (49%), Positives = 49/79 (61%)
Query: 33 LPKINTVRKNIARVLTVISQNQRQAVRELYKGKKYQPKDXXXXXXXXXXXXXXXFEASQV 92
L KI VRK+IA+VLTVISQ Q+ A+RE YK KK P D +AS
Sbjct: 44 LSKIKVVRKSIAQVLTVISQKQKSALREAYKNKKLLPLDLRPKKTRAIRRRLTKHQASLK 103
Query: 93 TEKQRKKQIAFPQRKYAIK 111
TE+++KK++ FP RKYAIK
Sbjct: 104 TEREKKKEMYFPVRKYAIK 122
>SPCC613.05c [J] KOG3436 60S ribosomal protein L35
Length = 122
Score = 72.4 bits (176), Expect = 1e-13
Identities = 40/84 (47%), Positives = 49/84 (57%)
Query: 29 SRPSLPKINTVRKNIARVLTVISQNQRQAVRELYKGKKYQPKDXXXXXXXXXXXXXXXFE 88
S L KI T RK+IAR+LTVI+++ R A RE YK KKY P D +E
Sbjct: 39 SGSKLSKIKTTRKDIARILTVINESNRLAAREAYKNKKYIPLDLRQKKTRAIRRALTPYE 98
Query: 89 ASQVTEKQRKKQIAFPQRKYAIKA 112
S+ T KQ KK+ FP RKYA+KA
Sbjct: 99 QSRKTLKQIKKERYFPLRKYALKA 122
>At2g39390 [J] KOG3436 60S ribosomal protein L35
Length = 123
Score = 72.4 bits (176), Expect = 1e-13
Identities = 39/79 (49%), Positives = 49/79 (61%)
Query: 33 LPKINTVRKNIARVLTVISQNQRQAVRELYKGKKYQPKDXXXXXXXXXXXXXXXFEASQV 92
L KI VRK+IA+VLTVISQ Q+ A+RE YK KK P D +AS
Sbjct: 44 LSKIKVVRKSIAQVLTVISQKQKSALREAYKNKKLLPLDLRPKKTRAIRRRLTKHQASLK 103
Query: 93 TEKQRKKQIAFPQRKYAIK 111
TE+++KK++ FP RKYAIK
Sbjct: 104 TEREKKKEMYFPIRKYAIK 122
>At3g09500 [J] KOG3436 60S ribosomal protein L35
Length = 123
Score = 70.1 bits (170), Expect = 5e-13
Identities = 38/79 (48%), Positives = 48/79 (60%)
Query: 33 LPKINTVRKNIARVLTVISQNQRQAVRELYKGKKYQPKDXXXXXXXXXXXXXXXFEASQV 92
L KI VRK+IA+VLTV SQ Q+ A+RE YK KK P D +AS
Sbjct: 44 LSKIKVVRKSIAQVLTVSSQKQKSALREAYKNKKLLPLDLRPKKTRAIRRRLTKHQASLK 103
Query: 93 TEKQRKKQIAFPQRKYAIK 111
TE+++KK++ FP RKYAIK
Sbjct: 104 TEREKKKEMYFPIRKYAIK 122
>At3g55170 [J] KOG3436 60S ribosomal protein L35
Length = 123
Score = 69.3 bits (168), Expect = 8e-13
Identities = 38/79 (48%), Positives = 47/79 (59%)
Query: 33 LPKINTVRKNIARVLTVISQNQRQAVRELYKGKKYQPKDXXXXXXXXXXXXXXXFEASQV 92
L KI VRK+IA+VLTV SQ Q+ A+RE YK KK P D +AS
Sbjct: 44 LSKIKVVRKSIAQVLTVSSQKQKSALREAYKNKKLLPLDLRPKKTRAIRRRLTKHQASLK 103
Query: 93 TEKQRKKQIAFPQRKYAIK 111
TE+++KK + FP RKYAIK
Sbjct: 104 TEREKKKDMYFPIRKYAIK 122
>7290609 [J] KOG3436 60S ribosomal protein L35
Length = 121
Score = 62.4 bits (150), Expect = 1e-10
Identities = 32/80 (40%), Positives = 48/80 (60%)
Query: 33 LPKINTVRKNIARVLTVISQNQRQAVRELYKGKKYQPKDXXXXXXXXXXXXXXXFEASQV 92
L KI VRK IARV V+ Q Q++ +R+++K KKY+P D +A++
Sbjct: 42 LSKIRVVRKAIARVYIVMHQKQKENLRKVFKNKKYKPLDLRKKKTRAIRKALSPRDANRK 101
Query: 93 TEKQRKKQIAFPQRKYAIKA 112
T K+ +K+ FPQRK+A+KA
Sbjct: 102 TLKEIRKRSVFPQRKFAVKA 121
>CE00450 [J] KOG3436 60S ribosomal protein L35
Length = 123
Score = 57.8 bits (138), Expect = 2e-09
Identities = 33/80 (41%), Positives = 43/80 (53%)
Query: 33 LPKINTVRKNIARVLTVISQNQRQAVRELYKGKKYQPKDXXXXXXXXXXXXXXXFEASQV 92
L KI VRKNIAR+LTVI+Q Q+Q +R+ Y KY+P D E S
Sbjct: 44 LSKIRVVRKNIARLLTVINQTQKQELRKFYADHKYKPIDLRLKKTRAIRRRLTAHELSLR 103
Query: 93 TEKQRKKQIAFPQRKYAIKA 112
+ KQ+ K RK+A+KA
Sbjct: 104 SAKQQAKSRNQAVRKFAVKA 123
>Hs22060847 [J] KOG3436 60S ribosomal protein L35
Length = 94
Score = 43.5 bits (101), Expect = 5e-05
Identities = 19/63 (30%), Positives = 35/63 (55%)
Query: 50 ISQNQRQAVRELYKGKKYQPKDXXXXXXXXXXXXXXXFEASQVTEKQRKKQIAFPQRKYA 109
+++ Q++ +R+ YKG+ Y+P D E + T+KQ++K+ +P KYA
Sbjct: 32 VAKTQKENLRKFYKGRNYKPLDLRPKKTRAMRRRLNKHEENPKTKKQQRKERLYPLGKYA 91
Query: 110 IKA 112
+KA
Sbjct: 92 VKA 94
>Hs17476320 [J] KOG3436 60S ribosomal protein L35
Length = 101
Score = 42.0 bits (97), Expect = 1e-04
Identities = 19/37 (51%), Positives = 28/37 (75%)
Query: 33 LPKINTVRKNIARVLTVISQNQRQAVRELYKGKKYQP 69
L KI V K++ARVLTVI+Q Q++ +R+ KGK+ +P
Sbjct: 44 LSKIRVVCKSVARVLTVINQTQKENIRKFCKGKRCEP 80
>Hs20539638 [J] KOG3436 60S ribosomal protein L35
Length = 219
Score = 39.3 bits (90), Expect = 0.001
Identities = 19/63 (30%), Positives = 35/63 (55%)
Query: 50 ISQNQRQAVRELYKGKKYQPKDXXXXXXXXXXXXXXXFEASQVTEKQRKKQIAFPQRKYA 109
+++ Q++ +R+ YKGKKY+P D + + T+K+++K+ RKYA
Sbjct: 151 VAKTQKEKLRKFYKGKKYKPLDLWPKKTRAMCCRFNKHKENLKTKKRQRKERLCLLRKYA 210
Query: 110 IKA 112
+KA
Sbjct: 211 VKA 213
>Hs18566413 [J] KOG3436 60S ribosomal protein L35
Length = 99
Score = 33.5 bits (75), Expect = 0.050
Identities = 24/50 (48%), Positives = 30/50 (60%), Gaps = 11/50 (22%)
Query: 33 LPKINTVRKNIARVLTVISQNQR----QAVR-------ELYKGKKYQPKD 71
LPKI VRK+IA VLTVI+Q Q+ +A+R E K KK Q K+
Sbjct: 43 LPKILVVRKSIAHVLTVINQTQKAKKTRAMRRRLNKHEENLKTKKQQRKE 92
>ECU11g2060 [J] KOG3436 60S ribosomal protein L35
Length = 122
Score = 31.2 bits (69), Expect = 0.25
Identities = 20/76 (26%), Positives = 33/76 (43%), Gaps = 2/76 (2%)
Query: 36 INTVRKNIARVLTVISQNQRQAVRELYKGKKYQ--PKDXXXXXXXXXXXXXXXFEASQVT 93
I T +KN+AR LTV + + + E Y+G PK+ + + T
Sbjct: 44 IKTAKKNLARALTVRREKILEELVEAYRGTPVSKLPKELRPKLNRSKRRALTKTQLRRKT 103
Query: 94 EKQRKKQIAFPQRKYA 109
+QR + FP+ +A
Sbjct: 104 RRQRARMSKFPRVIFA 119
>ECU10g0070 [J] KOG3436 60S ribosomal protein L35
Length = 122
Score = 31.2 bits (69), Expect = 0.25
Identities = 20/76 (26%), Positives = 33/76 (43%), Gaps = 2/76 (2%)
Query: 36 INTVRKNIARVLTVISQNQRQAVRELYKGKKYQ--PKDXXXXXXXXXXXXXXXFEASQVT 93
I T +KN+AR LTV + + + E Y+G PK+ + + T
Sbjct: 44 IKTAKKNLARALTVRREKILEELVEAYRGTPVSKLPKELRPKLNRSKRRALTKTQLRRKT 103
Query: 94 EKQRKKQIAFPQRKYA 109
+QR + FP+ +A
Sbjct: 104 RRQRARMSKFPRVIFA 119
>ECU07g1820 [J] KOG3436 60S ribosomal protein L35
Length = 122
Score = 31.2 bits (69), Expect = 0.25
Identities = 20/76 (26%), Positives = 33/76 (43%), Gaps = 2/76 (2%)
Query: 36 INTVRKNIARVLTVISQNQRQAVRELYKGKKYQ--PKDXXXXXXXXXXXXXXXFEASQVT 93
I T +KN+AR LTV + + + E Y+G PK+ + + T
Sbjct: 44 IKTAKKNLARALTVRREKILEELVEAYRGTPVSKLPKELRPKLNRSKRRALTKTQLRRKT 103
Query: 94 EKQRKKQIAFPQRKYA 109
+QR + FP+ +A
Sbjct: 104 RRQRARMSKFPRVIFA 119
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.314 0.127 0.332
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,599,830
Number of Sequences: 60738
Number of extensions: 81301
Number of successful extensions: 208
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 190
Number of HSP's gapped (non-prelim): 17
length of query: 112
length of database: 30,389,216
effective HSP length: 88
effective length of query: 24
effective length of database: 25,044,272
effective search space: 601062528
effective search space used: 601062528
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)