ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactVI1472 good A KOG2953 RNA processing and modification mRNA-binding protein Encore
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= r_klactVI1472 522324  523598 425  
         (425 letters)

Database: KOG eukaryal database 04/03 
           60,738 sequences; 30,389,216 total letters

Searching..................................................done

Color Key for Alignment Scores:   


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

YDL189w [A] KOG2953 mRNA-binding protein Encore                       122   1e-27
Hs7661874 [A] KOG2953 mRNA-binding protein Encore                      55   3e-07
7292394 [A] KOG2953 mRNA-binding protein Encore                        54   3e-07
Hs7662442 [A] KOG2953 mRNA-binding protein Encore                      52   2e-06

>YDL189w [A] KOG2953 mRNA-binding protein Encore
          Length = 457

 Score =  122 bits (306), Expect = 1e-27
 Identities = 112/445 (25%), Positives = 182/445 (40%), Gaps = 74/445 (16%)

Query: 6   VTPALLIALFQKPQDRVFLIDLENSVLDFVESSAYTYQLKPMNSYYRLLSHQVAEYHGLQ 65
           +TPA+   LFQKPQDR+F+I+LENS++ F+ S+  ++QL+PMNSYYRLLSHQ+AEYH L 
Sbjct: 11  LTPAMETGLFQKPQDRIFIIELENSIVSFINSNTESFQLRPMNSYYRLLSHQIAEYHNLN 70

Query: 66  HTVSKDNDKCVIVYKQNDYEPNANLILLQELEPQVMYQFPPEYYALASMAAANNQQQLIH 125
           H +++  D CVI++K  +++      LLQEL+        PE  A +S +   +    I 
Sbjct: 71  HVLARTQDSCVILFKGENFQKIEGKPLLQELQ----LNKKPEECASSSESIEKSNNNRIF 126

Query: 126 KTIRQKPRQSSQHHTPVSAPEHVSDNQTTRDNAQVTDDKSAEGVSPAAAALRMSIKKKVK 185
           + +++K   +          ++  D  T   N+ +T + + +                  
Sbjct: 127 RILKRKEVGNE--------CDYKIDGNTRTPNSNLTANSNKD------------------ 160

Query: 186 ILKREVETDSGQSRDLSHEATTSTSIENTLEEEKGAGSNKDSTVIDLEEQRRIKEQQYNE 245
              +++E D   S DL  E      +    ++E     NK     D++          + 
Sbjct: 161 ---QKIEIDDKSSTDLEQERIEKERLYEQRKQEIFDKLNKSED--DVKSTNSSGSSDSDN 215

Query: 246 EKEKIFSGXXXXXXXXXXXXXXXXXXNSASGSNGEADDSPQPHQFETSRFNLNHQNEMKY 305
           E     +G                  NS+  +     + PQ  QF  SR     +     
Sbjct: 216 EWSDWLNGDDSNTQTSNGSVSSSSPFNSSVTT--IQVNKPQ-QQFYDSRRGRGGRRRGTN 272

Query: 306 MKKTQYQHNNKRQNSHNNRYNKPLNRQPVMHPYYGVPPPMAPMRPDSIPFGYQMVAPMEY 365
             K  Y+    R+N  N  Y    +      PY   PPP   M  +S+P    M  P   
Sbjct: 273 NYKDAYR-GQSRRNKENGGYQSGYS-----SPYLVYPPPQ--MGGNSLPTYPLMYNPAGP 324

Query: 366 MYYPIGAPMT--NNRMMI---------PGQPMYAMPPPVFQPYEKK-------------- 400
              P  +PM   NN + +          G   +  P P++ PY+ +              
Sbjct: 325 APGPAPSPMVMGNNTVFMNPYMYNMNPQGSCSFGTPIPMYPPYQYQYQYQYNTQYHSGPY 384

Query: 401 -NSGKNDSNGYKKNGKPINEARHFR 424
            N+   +SN Y ++    N+  HF+
Sbjct: 385 SNTPSYNSNNYTRSS--ANKYHHFQ 407


>Hs7661874 [A] KOG2953 mRNA-binding protein Encore
          Length = 971

 Score = 54.7 bits (130), Expect = 3e-07
 Identities = 30/75 (40%), Positives = 46/75 (61%), Gaps = 2/75 (2%)

Query: 10  LLIALFQKPQDRVFLIDLENSVLDFV-ESSAYTYQLKPMNSYYRLLSHQVAEYHGLQHTV 68
           L+  L   P+DR+ L+ LE  +LDF+  + +   +  PM SY+R+L H+VA Y GL H V
Sbjct: 113 LVNTLKNNPRDRMMLLKLEQEILDFIGNNESPRKKFPPMTSYHRMLLHRVAAYFGLDHNV 172

Query: 69  SKDNDKCVIVYKQND 83
            + + K VIV K ++
Sbjct: 173 DQ-SGKSVIVNKTSN 186


>7292394 [A] KOG2953 mRNA-binding protein Encore
          Length = 1805

 Score = 54.3 bits (129), Expect = 3e-07
 Identities = 25/67 (37%), Positives = 41/67 (60%), Gaps = 2/67 (2%)

Query: 14  LFQKPQDRVFLIDLENSVLDFVE--SSAYTYQLKPMNSYYRLLSHQVAEYHGLQHTVSKD 71
           L + P+DR  L+ +E  ++DFV+  S    Y+  P +SY R+L H+ A + G++H V  +
Sbjct: 437 LNKNPKDRNILLKIEKDLIDFVQENSRGCEYRFPPASSYNRMLIHRTAAFFGMEHNVDTE 496

Query: 72  NDKCVIV 78
             +CVIV
Sbjct: 497 TQQCVIV 503


>Hs7662442 [A] KOG2953 mRNA-binding protein Encore
          Length = 840

 Score = 52.0 bits (123), Expect = 2e-06
 Identities = 27/75 (36%), Positives = 46/75 (61%), Gaps = 2/75 (2%)

Query: 10 LLIALFQKPQDRVFLIDLENSVLDFVESSAYTYQLKP-MNSYYRLLSHQVAEYHGLQHTV 68
          L+  L + P+DR+ L+ LE  +L+F+  +   ++  P M SY+R+L H+VA Y G+ H V
Sbjct: 22 LVNTLKKNPRDRMMLLKLEQEILEFINDNNNQFKKFPQMTSYHRMLLHRVAAYFGMDHNV 81

Query: 69 SKDNDKCVIVYKQND 83
           +   K VI+ K ++
Sbjct: 82 DQ-TGKAVIINKTSN 95


  Database: KOG eukaryal database 04/03
    Posted date:  Apr 14, 2003  1:07 PM
  Number of letters in database: 30,389,216
  Number of sequences in database:  60,738
  
Lambda     K      H
   0.311    0.128    0.365 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,339,601
Number of Sequences: 60738
Number of extensions: 1266048
Number of successful extensions: 5076
Number of sequences better than 1.0e-05: 4
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 5066
Number of HSP's gapped (non-prelim): 9
length of query: 425
length of database: 30,389,216
effective HSP length: 109
effective length of query: 316
effective length of database: 23,768,774
effective search space: 7510932584
effective search space used: 7510932584
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)