ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactVI1535 good J KOG1762 Translation, ribosomal structure and biogenesis 60s acidic ribosomal protein P1
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactVI1535 544997 545308 104
(104 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YDL130w [J] KOG1762 60s acidic ribosomal protein P1 105 1e-23
SPCP1E11.09c [J] KOG1762 60s acidic ribosomal protein P1 72 1e-13
SPBC3B9.13c [J] KOG1762 60s acidic ribosomal protein P1 72 1e-13
SPAC644.15 [J] KOG1762 60s acidic ribosomal protein P1 72 1e-13
YDL081c [J] KOG1762 60s acidic ribosomal protein P1 69 1e-12
At1g01100 [J] KOG1762 60s acidic ribosomal protein P1 53 8e-08
At5g47700 [J] KOG1762 60s acidic ribosomal protein P1 52 2e-07
At5g24510 [J] KOG1762 60s acidic ribosomal protein P1 50 4e-07
CE26658 [J] KOG1762 60s acidic ribosomal protein P1 50 7e-07
7296207 [J] KOG1762 60s acidic ribosomal protein P1 49 2e-06
>YDL130w [J] KOG1762 60s acidic ribosomal protein P1
Length = 106
Score = 105 bits (262), Expect = 1e-23
Identities = 53/106 (50%), Positives = 66/106 (62%), Gaps = 2/106 (1%)
Query: 1 MSDAVISYASLILADAGLDVTADNLLTLTKAAGASIDNVWAETFAKALEGKDIKEILSGF 60
MSD++IS+A+ ILADAGL++T+DNLLT+TKAAGA++DNVWA+ +AKALEGKD+KEILSGF
Sbjct: 1 MSDSIISFAAFILADAGLEITSDNLLTITKAAGANVDNVWADVYAKALEGKDLKEILSGF 60
Query: 61 HXX--XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMGFGLFD 104
H MGFGLFD
Sbjct: 61 HNAGPVAGAGAASGAAAAGGDAAAEEEKEEEAAEESDDDMGFGLFD 106
>SPCP1E11.09c [J] KOG1762 60s acidic ribosomal protein P1
Length = 109
Score = 72.4 bits (176), Expect = 1e-13
Identities = 39/106 (36%), Positives = 51/106 (47%), Gaps = 3/106 (2%)
Query: 2 SDAVISYASLILADAGLDVTADNLLTLTKAAGASIDNVWAETFAKALEGKDIKEILSGFH 61
S+ SYA+LILAD G+++T+D LL+LTKA ++ +WA FAKALEGKD+KE+L
Sbjct: 4 SELATSYAALILADEGIEITSDKLLSLTKAGNVEVEPIWATIFAKALEGKDLKELLLNIG 63
Query: 62 XXXXXXXXXXXXXXXXX---XXXXXXXXXXXXXXXXXXXMGFGLFD 104
MGFGLFD
Sbjct: 64 SAGAASAPTAAGAGAAAPAEAAEEEKKEEAKEEEESDEDMGFGLFD 109
>SPBC3B9.13c [J] KOG1762 60s acidic ribosomal protein P1
Length = 110
Score = 72.4 bits (176), Expect = 1e-13
Identities = 32/56 (57%), Positives = 45/56 (80%)
Query: 2 SDAVISYASLILADAGLDVTADNLLTLTKAAGASIDNVWAETFAKALEGKDIKEIL 57
S+ SY++LILAD G+++T+D LL+LTKAA ++ +WA FAKALEGKD+KE+L
Sbjct: 4 SELATSYSALILADEGIEITSDKLLSLTKAANVDVEPIWATIFAKALEGKDLKELL 59
>SPAC644.15 [J] KOG1762 60s acidic ribosomal protein P1
Length = 109
Score = 72.4 bits (176), Expect = 1e-13
Identities = 32/56 (57%), Positives = 45/56 (80%)
Query: 2 SDAVISYASLILADAGLDVTADNLLTLTKAAGASIDNVWAETFAKALEGKDIKEIL 57
S+ SY++LILAD G+++T+D LL+LTKAA ++ +WA FAKALEGKD+KE+L
Sbjct: 4 SELATSYSALILADEGIEITSDKLLSLTKAANVDVEPIWATIFAKALEGKDLKELL 59
>YDL081c [J] KOG1762 60s acidic ribosomal protein P1
Length = 106
Score = 68.9 bits (167), Expect = 1e-12
Identities = 34/104 (32%), Positives = 56/104 (53%), Gaps = 1/104 (0%)
Query: 2 SDAVISYASLILADAGLDVTADNLLTLTKAAGASIDNVWAETFAKALEGKDIKEILSGFH 61
+++ +SYA+LILAD+ ++++++ LLTLT AA ++N+WA+ FAKAL+G+++K++L F
Sbjct: 3 TESALSYAALILADSEIEISSEKLLTLTNAANVPVENIWADIFAKALDGQNLKDLLVNFS 62
Query: 62 XXXXX-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMGFGLFD 104
MGFGLFD
Sbjct: 63 AGAAAPAGVAGGVAGGEAGEAEAEKEEEEAKEESDDDMGFGLFD 106
>At1g01100 [J] KOG1762 60s acidic ribosomal protein P1
Length = 112
Score = 52.8 bits (125), Expect = 8e-08
Identities = 23/57 (40%), Positives = 37/57 (64%)
Query: 1 MSDAVISYASLILADAGLDVTADNLLTLTKAAGASIDNVWAETFAKALEGKDIKEIL 57
+ + SYA +IL D G+ +TAD + TL KAAG SI++ W FAK E +++ +++
Sbjct: 4 VGELACSYAVMILEDEGIAITADKIATLVKAAGVSIESYWPMLFAKMAEKRNVTDLI 60
>At5g47700 [J] KOG1762 60s acidic ribosomal protein P1
Length = 113
Score = 51.6 bits (122), Expect = 2e-07
Identities = 22/57 (38%), Positives = 37/57 (64%)
Query: 1 MSDAVISYASLILADAGLDVTADNLLTLTKAAGASIDNVWAETFAKALEGKDIKEIL 57
+ + SYA +IL D G+ +TAD + TL KAAG +I++ W FAK E +++ +++
Sbjct: 4 VGELACSYAVMILEDEGIAITADKIATLVKAAGVTIESYWPMLFAKMAEKRNVTDLI 60
>At5g24510 [J] KOG1762 60s acidic ribosomal protein P1
Length = 111
Score = 50.4 bits (119), Expect = 4e-07
Identities = 21/56 (37%), Positives = 37/56 (65%)
Query: 2 SDAVISYASLILADAGLDVTADNLLTLTKAAGASIDNVWAETFAKALEGKDIKEIL 57
S+ +YA+LIL D G+++TA+N+ L K A ++++ W FAK E K+I +++
Sbjct: 4 SELACTYAALILHDDGIEITAENISKLVKTANVNVESYWPSLFAKLCEKKNIDDLI 59
>CE26658 [J] KOG1762 60s acidic ribosomal protein P1
Length = 111
Score = 49.7 bits (117), Expect = 7e-07
Identities = 31/101 (30%), Positives = 40/101 (38%), Gaps = 4/101 (3%)
Query: 8 YASLILADAGLDVTADNLLTLTKAAGASIDNVWAETFAKALEGKDIKEIL----SGFHXX 63
YA+LIL D + +T + + TL KAA + W FAKALEG D+K ++ SG
Sbjct: 11 YAALILQDDEVAITGEKIATLLKAANVEFEPYWPGLFAKALEGVDVKNLITSVSSGAGSG 70
Query: 64 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMGFGLFD 104
MGFGLFD
Sbjct: 71 PAPAAAAAAPAAGGAAPAAETKKKEEPKEESDDDMGFGLFD 111
>7296207 [J] KOG1762 60s acidic ribosomal protein P1
Length = 112
Score = 48.5 bits (114), Expect = 2e-06
Identities = 22/51 (43%), Positives = 34/51 (66%)
Query: 8 YASLILADAGLDVTADNLLTLTKAAGASIDNVWAETFAKALEGKDIKEILS 58
YASLIL D + VT + + T+ KAA ++ W FAKALEG ++K++++
Sbjct: 11 YASLILVDDDVAVTGEKINTILKAANVEVEPYWPGLFAKALEGINVKDLIT 61
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.319 0.135 0.377
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,174,949
Number of Sequences: 60738
Number of extensions: 72715
Number of successful extensions: 238
Number of sequences better than 1.0e-05: 10
Number of HSP's better than 0.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 228
Number of HSP's gapped (non-prelim): 10
length of query: 104
length of database: 30,389,216
effective HSP length: 80
effective length of query: 24
effective length of database: 25,530,176
effective search space: 612724224
effective search space used: 612724224
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)