ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactVI1554 good R KOG1674 General function prediction only Cyclin
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactVI1554 552056 552988 311
(311 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YDL179w [R] KOG1674 Cyclin 188 1e-47
YDL127w [R] KOG1674 Cyclin 182 4e-46
YNL289w [R] KOG1674 Cyclin 129 7e-30
>YDL179w [R] KOG1674 Cyclin
Length = 304
Score = 188 bits (477), Expect = 1e-47
Identities = 101/199 (50%), Positives = 134/199 (66%), Gaps = 11/199 (5%)
Query: 1 MSEHQALLQFNKQVVNLEMVHFLAATTASVISI--NDTDVRHGSTVSLVDFIKSLIRHSN 58
+S++ ALLQFNK+ V+ EM+ FLA +TAS+I I N+ ++ L FIK+++ SN
Sbjct: 2 ISDYDALLQFNKKPVSQEMIQFLATSTASIIKIRENNNPIQGCRPPDLSIFIKNVVIQSN 61
Query: 59 VQTPTLMATTVYLTKLRSILPHDVCGIETTRHRIFIGCLILAAKNLNDSSPLNKHWTNYT 118
VQTPTLMAT+VYL KL+S++P +V GI TTRHRIF+GCLILAAK LNDSSP NKHWT YT
Sbjct: 62 VQTPTLMATSVYLNKLKSVIPKNVYGINTTRHRIFLGCLILAAKTLNDSSPWNKHWTTYT 121
Query: 119 DGLFTLEDVNTIEREXXXXXXXXXXXXMQELVQALSHFLVPIQYQLSTKKSIQNQGANKN 178
+GL + +VNTIERE +L+ +LS+FL PI+ QL ++ +
Sbjct: 122 EGLLRIREVNTIERELLEYLNWDVRITTPDLIDSLSYFLGPIKEQLFLQRRQE------- 174
Query: 179 CSHLLFNAPVSGQTKNFLN 197
LLFNAP GQ K ++N
Sbjct: 175 --MLLFNAPSPGQLKEYIN 191
>YDL127w [R] KOG1674 Cyclin
Length = 279
Score = 182 bits (463), Expect = 4e-46
Identities = 96/164 (58%), Positives = 116/164 (70%), Gaps = 3/164 (1%)
Query: 1 MSEHQALLQFNKQVVNLEMVHFLAATTASVISINDTDVRHGSTVS---LVDFIKSLIRHS 57
MS ++ALL+FN++ V+ EMV +LA+TTAS+I I T+ + L FI LI+HS
Sbjct: 1 MSNYEALLKFNRKAVSKEMVQYLASTTASIIKIKKTNSMIDIALPAPPLTKFINRLIKHS 60
Query: 58 NVQTPTLMATTVYLTKLRSILPHDVCGIETTRHRIFIGCLILAAKNLNDSSPLNKHWTNY 117
NVQTPTLMAT+VYL KLRSI+P +V GIETTRHRIF+GCLILAAK LNDSSPLNKHW Y
Sbjct: 61 NVQTPTLMATSVYLAKLRSIIPSNVYGIETTRHRIFLGCLILAAKTLNDSSPLNKHWAEY 120
Query: 118 TDGLFTLEDVNTIEREXXXXXXXXXXXXMQELVQALSHFLVPIQ 161
TDGL L +VNTIERE +L+ LS FL PI+
Sbjct: 121 TDGLLILREVNTIERELLEYFDWDVTISTDDLITCLSPFLKPIK 164
>YNL289w [R] KOG1674 Cyclin
Length = 279
Score = 129 bits (323), Expect = 7e-30
Identities = 70/162 (43%), Positives = 94/162 (57%), Gaps = 8/162 (4%)
Query: 12 KQVVNLEMVHFLAATTASVISINDTDVRHGST--------VSLVDFIKSLIRHSNVQTPT 63
K V +++ FL TT V+ ++ GS SL+ FI L+R++NV TPT
Sbjct: 13 KSPVTDDIIKFLTDTTLRVVPSSNYPTPPGSPGEKHLTRLPSLMTFITRLVRYTNVYTPT 72
Query: 64 LMATTVYLTKLRSILPHDVCGIETTRHRIFIGCLILAAKNLNDSSPLNKHWTNYTDGLFT 123
L+ YL KL+ ILP D G+ +T HRIF+ CLIL+AK NDSSPLNKHW YTDGLFT
Sbjct: 73 LLTAACYLNKLKRILPRDATGLPSTIHRIFLACLILSAKFHNDSSPLNKHWARYTDGLFT 132
Query: 124 LEDVNTIEREXXXXXXXXXXXXMQELVQALSHFLVPIQYQLS 165
LED+N +ER+ ++L+ L L PI+ L+
Sbjct: 133 LEDINLMERQLLQLLNWDLRVNTEDLILDLQPLLEPIKQDLA 174
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.318 0.130 0.372
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,690,975
Number of Sequences: 60738
Number of extensions: 446853
Number of successful extensions: 993
Number of sequences better than 1.0e-05: 3
Number of HSP's better than 0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 987
Number of HSP's gapped (non-prelim): 3
length of query: 311
length of database: 30,389,216
effective HSP length: 106
effective length of query: 205
effective length of database: 23,950,988
effective search space: 4909952540
effective search space used: 4909952540
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)