ORF      STATUS       Function Best COG  Functional category                                          Pathways and functional systems
r_klactVI1611   suspect: LH   J     KOG1698  Translation, ribosomal structure and biogenesis                Mitochondrial/chloroplast ribosomal protein L19

BLASTP 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= r_klactVI1611 573009  573521 171  
         (171 letters)

Database: KOG eukaryal database 04/03 
           60,738 sequences; 30,389,216 total letters

Searching..................................................done

Color Key for Alignment Scores:   


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

YCR046c [J] KOG1698 Mitochondrial/chloroplast ribosomal protein L19   201   4e-52
SPAC343.02 [J] KOG1698 Mitochondrial/chloroplast ribosomal prote...    57   2e-08

>YCR046c [J] KOG1698 Mitochondrial/chloroplast ribosomal protein L19
          Length = 169

 Score =  201 bits (511), Expect = 4e-52
 Identities = 96/157 (61%), Positives = 127/157 (80%), Gaps = 1/157 (0%)

Query: 15  RSYQLPAKSGRKIIPVYPPVERISSPLVVKTLADHDLKQLDPTGVKTEMVSKKNPNRLRA 74
           RSY +PA   RK IPVYPPV+RI+S  ++K +A  +++ LDP  VK +++SKKN +RL+A
Sbjct: 14  RSYMVPATK-RKTIPVYPPVQRIASSQIMKQVALSEIESLDPGAVKRKLISKKNKDRLKA 72

Query: 75  GDVLRVVYDSKKCNYDSFTGYVLSVDRKPIVQDTSILLRDYIYKTCVEMRVPIFSPLVER 134
           GDV+R+VYDS KC+YD+F GY+LS+DRK +VQD S+LLR+ I KT VE+RVP+FSPL+ER
Sbjct: 73  GDVVRIVYDSSKCSYDTFVGYILSIDRKQLVQDASLLLRNQIAKTAVEIRVPLFSPLIER 132

Query: 135 IDLIRRADGKRRRSKHYYIRNTRLDVGDLEASMRKKK 171
           IDL+      R+R+KHYYIR TRLDVGDLEA +R+KK
Sbjct: 133 IDLLTPHVSSRQRNKHYYIRGTRLDVGDLEAGLRRKK 169


>SPAC343.02 [J] KOG1698 Mitochondrial/chloroplast ribosomal protein L19
          Length = 182

 Score = 56.6 bits (135), Expect = 2e-08
 Identities = 40/121 (33%), Positives = 65/121 (53%), Gaps = 7/121 (5%)

Query: 54  LDPTGVKTEMVSKKNPNRLRAGDVLRVVYDSKKCNYDS---FTGYVLSVDRKPIVQDTSI 110
           LD    + +M  +  PNR+R G VL V   SK  + DS   F GY+L +  +     +SI
Sbjct: 55  LDEQSERFKMFHRSQPNRVRPGAVLLVESYSKYPSKDSVNRFAGYLLRIRHRG--PKSSI 112

Query: 111 LLRDYIYKTCVEMRVPIFSPLVERIDLIRRADGKRRRSKHY--YIRNTRLDVGDLEASMR 168
           LLR+ +    VE  +PI+SP ++RI +++     +R  + Y  Y+R  R  +  +E+ +R
Sbjct: 113 LLRNVVMGVGVEYLLPIYSPQIKRIVVLKENGLSKRPRRAYLSYLRQPRFRLPPVESLVR 172

Query: 169 K 169
           K
Sbjct: 173 K 173


  Database: KOG eukaryal database 04/03
    Posted date:  Apr 14, 2003  1:07 PM
  Number of letters in database: 30,389,216
  Number of sequences in database:  60,738
  
Lambda     K      H
   0.321    0.139    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,921,845
Number of Sequences: 60738
Number of extensions: 398401
Number of successful extensions: 842
Number of sequences better than 1.0e-05: 2
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 840
Number of HSP's gapped (non-prelim): 2
length of query: 171
length of database: 30,389,216
effective HSP length: 99
effective length of query: 72
effective length of database: 24,376,154
effective search space: 1755083088
effective search space used: 1755083088
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)