ORF      STATUS       Function Best COG  Functional category                                          Pathways and functional systems
r_klactVI1652 good J KOG2334 Translation, ribosomal structure and biogenesis tRNA-dihydrouridine synthase

Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= r_klactVI1652 591377 590301 -359 
         (359 letters)

Database: KOG eukaryal database 04/03 
           60,738 sequences; 30,389,216 total letters

Searching..................................................done

Color Key for Alignment Scores:   
Score E Sequences producing significant alignments: (bits) Value YNR015w [J] KOG2334 tRNA-dihydrouridine synthase 422 e-118 SPBC1709.06 [J] KOG2334 tRNA-dihydrouridine synthase 259 3e-69 Hs8923374 [J] KOG2334 tRNA-dihydrouridine synthase 196 6e-50 7292971 [J] KOG2334 tRNA-dihydrouridine synthase 187 3e-47 CE20317 [J] KOG2334 tRNA-dihydrouridine synthase 184 1e-46 At3g49640 [J] KOG2334 tRNA-dihydrouridine synthase 158 1e-38 Hs5902026 [J] KOG2335 tRNA-dihydrouridine synthase 96 8e-20 SPCC777.15 [J] KOG2335 tRNA-dihydrouridine synthase 88 2e-17 YLR405w [J] KOG2335 tRNA-dihydrouridine synthase 84 4e-16 CE09942 [J] KOG2335 tRNA-dihydrouridine synthase 84 4e-16 At5g67220 [J] KOG2335 tRNA-dihydrouridine synthase 82 1e-15 CE01854 [J] KOG2335 tRNA-dihydrouridine synthase 82 2e-15 ECU07g1610 [J] KOG2335 tRNA-dihydrouridine synthase 78 2e-14 7298533 [J] KOG2335 tRNA-dihydrouridine synthase 77 4e-14 7296234 [J] KOG2335 tRNA-dihydrouridine synthase 77 4e-14 SPBC36B7.04 [J] KOG2335 tRNA-dihydrouridine synthase 74 4e-13 YML080w [J] KOG2335 tRNA-dihydrouridine synthase 62 2e-09 YLR401c [R] KOG2333 Uncharacterized conserved protein 60 5e-09 At4g38890 [R] KOG2333 Uncharacterized conserved protein 58 2e-08 Hs22052882 [R] KOG2333 Uncharacterized conserved protein 57 3e-08 SPAC16.04 [R] KOG2333 Uncharacterized conserved protein 49 9e-06 >YNR015w [J] KOG2334 tRNA-dihydrouridine synthase Length = 384 Score = 422 bits (1086), Expect = e-118 Identities = 210/352 (59%), Positives = 266/352 (74%), Gaps = 6/352 (1%) Query: 1 MVQYAGKLVLAPMVRAGELPTRLLALKHGADLVWSPEIIDKKLIQCQRQVNDTLKTVDFI 60 MV YAGKLVLAPMVRAGELPTRL+AL HGADLVWSPEIIDKKLIQC R+ N L+TVD++ Sbjct: 1 MVTYAGKLVLAPMVRAGELPTRLMALAHGADLVWSPEIIDKKLIQCVRKENTALQTVDYV 60 Query: 61 IPAKREGTEPGVVFRTVPEVEHGKLIFQIGTSTPSLAVEAALKVIEDVAGIDVNAGCPKH 120 +P+K + +VFRT P++E KLIFQIG+++P+LA +AALKVI DV+GID+NAGCPKH Sbjct: 61 VPSKVQTRPETLVFRTYPKLESSKLIFQIGSASPALATQAALKVINDVSGIDINAGCPKH 120 Query: 121 FSIHSGMGAALLQTPDKLCSILIELVEKVGKIYGKPISVKIRILKDEEDTLTLVEKLCAT 180 FSIHSGMG+ALL+TPD LC IL ELV+ VG + KPISVKIR+L ++DTL LV++LCAT Sbjct: 121 FSIHSGMGSALLRTPDTLCLILKELVKNVGNPHSKPISVKIRLLDTKQDTLQLVKRLCAT 180 Query: 181 GITNLTVHCRTTPMRNRESPIRAYIPKIYEICERNKVSLIMNGAIRDKEHFEQLRSDLNL 240 GITNLTVHCR T MRNRE PI YI +IYEIC+ N VSLI+NGAIRD+ HF L+++ Sbjct: 181 GITNLTVHCRKTEMRNREQPITDYIAEIYEICQANNVSLIVNGAIRDRSHFHDLQANHWK 240 Query: 241 PKTIGGMMADCAERNPTVFSESPLP------WFKAVKEYLDIANQYNHHPANVKYMMNRM 294 IGGM+A+CAER+PTVF + P W A +E++ A ++++H N KYM++R+ Sbjct: 241 NTNIGGMIAECAERDPTVFDHTSKPSEDGPSWVVACREFIQWATKFDNHIGNTKYMLSRI 300 Query: 295 TPGKSPFYQYFTQCRKLSDFAHVCQQLGSSGGALNDPIPFLIQEREKEMAEK 346 PGKS F+QYF +C+ + + V +QL G A DP +L R +E A K Sbjct: 301 VPGKSVFFQYFARCKSPEEVSFVLKQLNDDGSAQTDPSEYLENCRAQEKALK 352 >SPBC1709.06 [J] KOG2334 tRNA-dihydrouridine synthase Length = 479 Score = 259 bits (663), Expect = 3e-69 Identities = 141/301 (46%), Positives = 198/301 (64%), Gaps = 13/301 (4%) Query: 1 MVQYAGKLVLAPMVRAGELPTRLLALKHGADLVWSPEIIDKKLIQ---CQRQVNDTLKTV 57 ++ Y+ K+ LAPMVR GELP RLLAL++GA+LVW PEI+DK L+ +R VND + + Sbjct: 3 LLNYSNKVCLAPMVRIGELPMRLLALRYGANLVWGPEIVDKALLSGTPVERVVNDRINCI 62 Query: 58 DFIIPAKREGTEPGVVFRTVPEVEHGKLIFQIGTSTPSLAVEAALKVIEDVAGIDVNAGC 117 DF+ P + V+FR P +E +LIFQ+G+++P LAVEAA V DVAGID+N GC Sbjct: 63 DFVKPPSNK-----VLFRVHP-LEANRLIFQLGSASPELAVEAAKLVANDVAGIDLNCGC 116 Query: 118 PKHFSIHSGMGAALLQTPDKLCSILIELVEKVGKIYGKPISVKIRILKDEEDTLTLVEKL 177 PKHFS+H+GMGA LL+ D+L SIL LV ++GK Y IS KIR+L+ +EDTL LVE++ Sbjct: 117 PKHFSVHAGMGAGLLKNQDRLVSILDALVNEIGKPYKISISCKIRLLETKEDTLKLVERI 176 Query: 178 CATGITNLTVHCRTTPMRNRESPIRAYIPKIYEICERNKVSLIMNGAIRDKEHFEQLRSD 237 C TG+ +TVHCRTTPMRN E R+Y+ +I +C VS+++NG D + Sbjct: 177 CDTGVRAITVHCRTTPMRNTEPADRSYLSEIVGVCRNKDVSILVNG---DVLSYNDGLDV 233 Query: 238 LNLPKTIGGMMADCAERNPTVFS-ESPLPWFKAVKEYLDIANQYNHHPANVKYMMNRMTP 296 + G ++A AERN + F E PL FK +E+L +A + +++ N KY +N++ Sbjct: 234 IEKYGVDGVLIARAAERNVSCFRIEGPLSSFKVAEEFLKMALEVDNNFGNTKYCLNQIMQ 293 Query: 297 G 297 G Sbjct: 294 G 294 >Hs8923374 [J] KOG2334 tRNA-dihydrouridine synthase Length = 493 Score = 196 bits (497), Expect = 6e-50 Identities = 124/293 (42%), Positives = 170/293 (57%), Gaps = 16/293 (5%) Query: 4 YAGKLVLAPMVRAGELPTRLLALKHGADLVWSPEIIDKKLIQCQRQVNDTLKTVDFIIPA 63 Y KL+LAPMVR G LP RLLAL +GAD+V+ E+ID K+IQC+R VN+ L TVDF+ P Sbjct: 10 YHNKLILAPMVRVGTLPMRLLALDYGADIVYCEELIDLKMIQCKRVVNEVLSTVDFVAPD 69 Query: 64 KREGTEPGVVFRTVPEVEHGKLIFQIGTSTPSLAVEAALKVIEDVAGIDVNAGCPKHFSI 123 R VVFRT E E +++FQ+GTS A+ A V DVAGIDVN GCPK +S Sbjct: 70 DR------VVFRTC-EREQNRVVFQMGTSDAERALAVARLVENDVAGIDVNMGCPKQYST 122 Query: 124 HSGMGAALLQTPDKLCSILIELVEKVGKIYGKPISVKIRILKDEEDTLTLVEKLCATGIT 183 GMGAALL PDK+ IL LV K +P++ KIRIL EDTL+LV+++ TGI Sbjct: 123 KGGMGAALLSDPDKIEKILSTLV----KGTRRPVTCKIRILPSLEDTLSLVKRIERTGIA 178 Query: 184 NLTVHCRTTPMRNRESPIRAYIPKIYEICERNKVSLIMNGAIRDK-EHFEQLRSDLNLPK 242 + VH R R + P+ + I I + + +I NG D + + + Sbjct: 179 AIAVHGRKREER-PQHPVSCEV--IKAIADTLSIPVIANGGSHDHIQQYSDIEDFRQATA 235 Query: 243 TIGGMMADCAERNPTVFSESPL-PWFKAVKEYLDIANQYNHHPANVKYMMNRM 294 M+A A NP++F + L P + +++Y+ A QY++H N KY + +M Sbjct: 236 ASSVMVARAAMWNPSIFLKEGLRPLEEVMQKYIRYAVQYDNHYTNTKYCLCQM 288 >7292971 [J] KOG2334 tRNA-dihydrouridine synthase Length = 460 Score = 187 bits (474), Expect = 3e-47 Identities = 127/356 (35%), Positives = 195/356 (54%), Gaps = 30/356 (8%) Query: 2 VQYAGKLVLAPMVRAGELPTRLLALKHGADLVWSPEIIDKKLIQCQRQVNDTLKTVDFII 61 + Y KL+LAPMVR G LP RLLAL+ GAD+V++ E++D KLI+ R+ N L TVDF+ Sbjct: 7 LDYRNKLILAPMVRVGTLPMRLLALEMGADIVYTEELVDIKLIKSIRRPNPALGTVDFVD 66 Query: 62 PAKREGTEPGVVFRTVPEVEHGKLIFQIGTSTPSLAVEAALKVIEDVAGIDVNAGCPKHF 121 P+ +GT +VFRT + E +L+ Q+GTS A+ + D++G+D+N GCPK F Sbjct: 67 PS--DGT---IVFRTCAQ-ETSRLVLQMGTSDAGRALAVGKLLQRDISGLDINMGCPKEF 120 Query: 122 SIHSGMGAALLQTPDKLCSILIELVEKVGKIYGKPISVKIRILKDEEDTLTLVEKLCATG 181 SI GMGAALL PDK IL L + P++ KIRIL D E T+ LV+KL ATG Sbjct: 121 SIKGGMGAALLADPDKAAHILRTLCSGL----DIPVTCKIRILPDVEGTIDLVQKLAATG 176 Query: 182 ITNLTVHCRTTPMRNRESPIRAYIPKIYEICERNKVSLIMNGAIRDKEHFEQLRSDLNLP 241 I + +H RT R+ A+ + + + + +I NG ++ ++ LR Sbjct: 177 IAAIGIHART---RDERPQHPAHPEVLRAVAQAVDIPIIANGGSKNMHCYDDLRKFQMEC 233 Query: 242 KTIGGMMADCAERNPTVF-SESPLPWFKAVKEYLDIANQYNHHPANVKYMMNRMTP--GK 298 M+A A+ N ++F E LP + +++YL + Y++ P N KY + + + Sbjct: 234 GADSVMVARAAQINVSIFRPEGLLPMDELIEKYLRLCVDYDNAPHNAKYCVQSILRELQE 293 Query: 299 SPFYQYFTQCRKLSDFAHV------CQQ-------LGSSGGALNDPIPFLIQEREK 341 +P + F QC+ L + C++ +G+SG A +P P + +R+K Sbjct: 294 TPRGKRFLQCQTLQQICEIWELGDYCRRKQRELKTMGNSGRAEVEP-PEALAKRQK 348 >CE20317 [J] KOG2334 tRNA-dihydrouridine synthase Length = 436 Score = 184 bits (468), Expect = 1e-46 Identities = 123/346 (35%), Positives = 186/346 (53%), Gaps = 22/346 (6%) Query: 4 YAGKLVLAPMVRAGELPTRLLALKHGADLVWSPEIIDKKLIQCQRQVNDTLKTVDFIIPA 63 Y K +LAPMVRAG P RLL LK+GADL ++ EI+DKKLI+ R VN+ L T+D+ Sbjct: 5 YRNKKILAPMVRAGRTPLRLLCLKYGADLCYTEEIVDKKLIEATRVVNEALGTIDY---- 60 Query: 64 KREGTEPGVVFRTVPEVEHGKLIFQIGTSTPSLAVEAALKVIEDVAGIDVNAGCPKHFSI 123 R G + ++ R PE E G+ I QIGT++ A + A V +DVAGIDVN GCPK FSI Sbjct: 61 -RNGDD--IILRLAPE-EKGRCILQIGTNSGEKAAKIAQIVGDDVAGIDVNMGCPKPFSI 116 Query: 124 HSGMGAALLQTPDKLCSILIELVEKVGKIYGKPISVKIRILKDEEDTLTLVEKLCATGIT 183 H GMGAALL +K+ IL L + K+ P++ KIR+L D EDTL LV+++ ++ Sbjct: 117 HCGMGAALLTQTEKIVDILTSL-KSAAKV---PVTCKIRVLDDPEDTLKLVQEIEKCRVS 172 Query: 184 NLTVHCRTTPMRNRESPIRAYIPKIYEICER-NKVSLIMNGAIRDKEHFEQLRSDLNLPK 242 L VH R R+ P + I +I ++ + + +I NG + E + L + Sbjct: 173 ALGVHGR---RRDERQPDKCRIDEIRDVAQAVQSIPVISNGLSDEIEQYSDFEKYQLLTE 229 Query: 243 TIGGMMADCAERNPTVF-SESPLPWFKAVKEYLDIANQYNHHPANVKYMMNRMTPGKSPF 301 T M+A A P++F E L ++ ++ +L++A QY+ KY++ R+ + Sbjct: 230 TSSTMIARKALSTPSIFRREGCLDKYEDIRNFLELACQYDESYTMTKYVVQRILGADQEY 289 Query: 302 YQYFTQCRKLSDFAHVCQQLGSSGGALNDPIPFLIQEREKEMAEKQ 347 +C+ G + D ER+K+ ++K+ Sbjct: 290 DPRGKATVAAGSVLQICKAFG-----MEDVYDKWRDERKKKQSKKR 330 >At3g49640 [J] KOG2334 tRNA-dihydrouridine synthase Length = 519 Score = 158 bits (399), Expect = 1e-38 Identities = 105/294 (35%), Positives = 161/294 (54%), Gaps = 17/294 (5%) Query: 2 VQYAGKLVLAPMVRAGELPTRLLALKHGADLVWSPEIIDKKLIQCQRQVNDTLKTVDFII 61 + Y KLVLAPMVR G L R+LA ++GAD+ + EIID KL++C+R++N T +F+ Sbjct: 217 MDYQNKLVLAPMVRVGTLSFRMLAAEYGADITYGEEIIDHKLVKCERRLNVASGTSEFV- 275 Query: 62 PAKREGTEPGVVFRTVPEVEHGKLIFQIGTSTPSLAVEAALKVIEDVAGIDVNAGCPKHF 121 +GT+ VVF T E E +++FQ+GTS A++A+ V DVA ID+N GCPK F Sbjct: 276 ---EKGTD-NVVFSTCDE-EKSRVVFQMGTSDAVRALKASEIVCNDVATIDINMGCPKAF 330 Query: 122 SIHSGMGAALLQTPDKLCSILIELVEKVGKIYGKPISVKIRILKDEEDTLTLVEKLCATG 181 SI GMGAALL P+ + IL L + P++ KIR+LK DT+ L ++ G Sbjct: 331 SIQGGMGAALLSKPELIHDILATLKRNL----DVPVTCKIRLLKSPADTVELARRIEKLG 386 Query: 182 ITNLTVHCRTTPMRNRESPIRAYIPKIYEICERNKVSLIMNGAIRDKEHFEQLRSDLNLP 241 + L VH R R R+ A +I ++ + +I NG + + + F ++++ Sbjct: 387 VPALAVHGRKIADRPRDP---AKWDEIADVVAALSIPVIANGDVLEYDDFSRIKTATGAA 443 Query: 242 KTIGGMMADCAERNPTVFS-ESPLPWFKAVKEYLDIANQYNHHPANVKYMMNRM 294 M+A A N ++FS + W K+YL + +N+ + KY + M Sbjct: 444 SV---MVARGAMWNASIFSPKGKSHWEDVKKKYLRKSILWNNDVKSTKYTIKEM 494 >Hs5902026 [J] KOG2335 tRNA-dihydrouridine synthase Length = 307 Score = 95.9 bits (237), Expect = 8e-20 Identities = 90/301 (29%), Positives = 140/301 (45%), Gaps = 42/301 (13%) Query: 4 YAGKLV--LAPMVRAGELPTRLLALKHGADLVWSPEIIDKKLIQCQRQVNDTLKTVDFII 61 ++G+LV APMVR +L R L K+ DL ++P I+ DF+ Sbjct: 13 HSGQLVKVCAPMVRYSKLAFRTLVRKYSCDLCYTPMIV----------------AADFVK 56 Query: 62 PAKREGTEPGVVFRTVPEVEHGKLIFQIGTSTPSLAVEAALKVIEDVAGIDVNAGCPKHF 121 K +E P LI Q + L +AA V GID+N GCP+ + Sbjct: 57 SIKARDSEFTTNQGDCP------LIVQFAANDARLLSDAARIVCPYANGIDINCGCPQRW 110 Query: 122 SIHSGMGAALLQTPDKLCSILIELVEKVGKIYGKPISVKIRILKDEEDTLTLVEKLCATG 181 ++ G GA L+ P+ L +++ V + G +S+KIRI D + T+ L +K ATG Sbjct: 111 AMAEGYGACLINKPE-LVQDMVKQVRNQVETPGFSVSIKIRINDDLKRTVDLCQKAEATG 169 Query: 182 ITNLTVHCRTTPMRNRESPIRAYIPKIYEICERNKVSLIMNGAIRDKEHFEQLRSDLNLP 241 ++ +TVH RT R P+ + I I E + +I NG IR + E + + Sbjct: 170 VSWITVHGRTA--EERHQPV--HYDSIKIIKENMCIPVIANGDIRSLKEAENV---WRIT 222 Query: 242 KTIGGMMADCAERNPTVFS---ESPLPWFKAVKEYLDIA----NQYNHHPANVKYMMNRM 294 T G M+A NP +F+ E+PL K + +++DIA Y ++ YMM ++ Sbjct: 223 GTDGVMVARGLLANPAMFAGYEETPL---KCIWDWVDIALELGTPYMCFHQHLMYMMEKI 279 Query: 295 T 295 T Sbjct: 280 T 280 >SPCC777.15 [J] KOG2335 tRNA-dihydrouridine synthase Length = 326 Score = 87.8 bits (216), Expect = 2e-17 Identities = 85/298 (28%), Positives = 132/298 (43%), Gaps = 49/298 (16%) Query: 9 VLAPMVRAGELPTRLLALKHGADLVWSPEIIDKKLIQCQRQVNDTLKTVDFIIPAKREGT 68 + APMVR +LP R L + D+V++P I+ K +F+ P R Sbjct: 23 IAAPMVRYSKLPFRQLVRDYNTDIVYTPMILAK----------------EFLHPKGR--- 63 Query: 69 EPGVVFRTVPEVEHGKLIFQIGTSTPSLAVEAALKVIEDVAGIDVNAGCPKHFSIHSGMG 128 F LI Q G P + +AA V V GI +N GCP+ ++I G+G Sbjct: 64 ----YFDFSTNDADASLILQFGVDDPVILEKAAQLVGPYVDGIGINCGCPQTWAIQEGIG 119 Query: 129 AALLQTPDKLCSILIELVEKVGKIYGKPISVKIRILKDEEDTLTLVEKLCATGITNLTVH 188 +ALL P+K+ ++ + +G+ + VKIRI KD T L++ + +G +TVH Sbjct: 120 SALLDEPEKVHKLVRAVKSTLGESF--CTEVKIRIAKDLNKTRHLMQVIEKSGADIITVH 177 Query: 189 CRTTPMRNRESPIRAYIPKIYEICERNKVSLIMNGAIRDKEHFEQLRSDLNLPK---TIG 245 RT R S + I E+ ++ ++ NG ++ LR L + K T G Sbjct: 178 GRT---RQDRSSFPVNLDAIREVRPCVQIPVVANGDVK------SLRKGLEIAKYTETQG 228 Query: 246 GMMADCAERNPTVFS-ESPLPWFKAVKEYLDIANQYN-------HHPANVKYMMNRMT 295 M A NP +F+ PW V+ +L + Y+ HH + MM +MT Sbjct: 229 IMSARGLLENPALFAGYEETPW-GCVERFLWYSTSYSLNFHLFYHH---LTTMMGQMT 282 >YLR405w [J] KOG2335 tRNA-dihydrouridine synthase Length = 367 Score = 83.6 bits (205), Expect = 4e-16 Identities = 66/219 (30%), Positives = 99/219 (45%), Gaps = 32/219 (14%) Query: 9 VLAPMVRAGELPTRLLALKHGADLVWSPEIIDKKLIQCQRQVNDTLKTVDFIIPAKREGT 68 + PMVR +LP R L ++ D+V+SP I+ ++ ++ + L T + Sbjct: 42 IAGPMVRYSKLPFRQLCREYNVDIVYSPMILAREYVRNEHARISDLSTNN---------- 91 Query: 69 EPGVVFRTVPEVEHGKLIFQIGTSTPSLAVEAALKVIEDVA----GIDVNAGCPKHFSIH 124 E LI Q+G + V LK +E VA GI +N GCP I Sbjct: 92 ------------EDTPLIVQVGVNN----VADLLKFVEMVAPYCDGIGINCGCPIKEQIR 135 Query: 125 SGMGAALLQTPDKLCSILIELVEKVGKIYGKPISVKIRILKDEEDTLTLVEKLCATGITN 184 G+G AL+ D LCS++ + +K G I KIRI + ++T+ L KLC G+ Sbjct: 136 EGIGCALIYNSDLLCSMVHAVKDKYGD--KLRIETKIRIHEALDETVELCRKLCDAGVDW 193 Query: 185 LTVHCRTTPMRNRESPIRAYIPKIYEICERNKVSLIMNG 223 +T+H RT R+ + I I E V +I NG Sbjct: 194 ITIHGRTRRTRSSQPANLDAIKYIIENISDKNVPVIANG 232 >CE09942 [J] KOG2335 tRNA-dihydrouridine synthase Length = 527 Score = 83.6 bits (205), Expect = 4e-16 Identities = 78/278 (28%), Positives = 127/278 (45%), Gaps = 36/278 (12%) Query: 9 VLAPMVRAGELPTRLLALKHGADLVWSPEIIDKKLIQCQRQVNDTLKTVDFIIPAKREGT 68 VLAPMV EL R+ K+GA L ++P +I VND + + K + Sbjct: 76 VLAPMVDQSELAFRMFTRKYGAQLTFTP------MIHAHLFVNDGTYRRNSLALVKAD-- 127 Query: 69 EPGVVFRTVPEVEHGKLIFQIGTSTPSLAVEAALKVIEDVA-GIDVNAGCPKHFSIHSGM 127 P VV +V+ AA +++EDV G+D+N GCP+ + Sbjct: 128 RPLVVQFCANKVD---------------TFLAACRLVEDVCDGVDLNLGCPQMVAKRGRY 172 Query: 128 GAALLQTPDKLCSILIELVEKVGKIYGKPISVKIRILKDEEDTLTLVEKLCATGITNLTV 187 G+ L D +C E+V V PIS KIR+ D + T+ ++L G T LTV Sbjct: 173 GSWLQDEVDLIC----EMVSAVRDYCRLPISCKIRVRDDRQQTVEYAKRLVDAGATMLTV 228 Query: 188 HCRTTPMRNRESPIRAYIPKIYEICER--NKVSLIMNGAIRDKEHFEQLRSDLNLPKTIG 245 H RT M+ E+ + + +I ++ E ++V ++ NG I+ E+ + + Sbjct: 229 HGRTRDMKGAETGLADW-SRIRDVVEAVGSRVPVMANGNIQFPGDVERC---MQATGAVA 284 Query: 246 GMMADCAERNPTVFSE--SPLPWFKAVKEYLDIANQYN 281 M A+ NP +F + + + +K EYL+ A ++N Sbjct: 285 IMSAEGLLYNPLIFDDANAHVDTWKIAAEYLEYAKKFN 322 >At5g67220 [J] KOG2335 tRNA-dihydrouridine synthase Length = 423 Score = 82.0 bits (201), Expect = 1e-15 Identities = 67/254 (26%), Positives = 108/254 (42%), Gaps = 30/254 (11%) Query: 7 KLVLAPMVRAGELPTRLLALKHGADLVWSPEIIDKKLIQCQRQVNDTLKTVDFIIPAKRE 66 K ++APMV ELP RLL K+GA ++P + + + ++ N T Sbjct: 89 KYIVAPMVDNSELPFRLLCQKYGAQAAYTPMLHSRIFTETEKYRNQEFTTCK-------- 140 Query: 67 GTEPGVVFRTVPEVEHGKLIFQIGTSTPSLAVEAALKVIEDVAGIDVNAGCPKHFSIHSG 126 E L Q + P +EAA +V +D+N GCP+ + Sbjct: 141 --------------EDRPLFVQFCANDPDTLLEAAKRVEPYCDYVDINLGCPQRIARRGN 186 Query: 127 MGAALLQTPDKLCSILIELVEKVGKIYGKPISVKIRILKDEEDTLTLVEKLCATGITNLT 186 GA L+ ++ LVEK+ + P+S KIRI + EDTL + L G + L Sbjct: 187 YGAFLMDN----LPLVKSLVEKLAQNLNVPVSCKIRIFPNLEDTLKYAKMLEDAGCSLLA 242 Query: 187 VHCRTTPMRNRESPIRAYIPKIYEICERNKVSLIMNGAIRDKEHFEQLRSDLNLPKTIGG 246 VH RT ++ + RA I E+ ++ ++ NG +R E + + + G Sbjct: 243 VHGRTRDEKDGKK-FRADWSAIKEVKNAMRIPVLANGNVRCIEDVDNCIKETGVE---GV 298 Query: 247 MMADCAERNPTVFS 260 + A+ NP F+ Sbjct: 299 LSAETLLENPAAFA 312 >CE01854 [J] KOG2335 tRNA-dihydrouridine synthase Length = 290 Score = 81.6 bits (200), Expect = 2e-15 Identities = 75/265 (28%), Positives = 114/265 (42%), Gaps = 36/265 (13%) Query: 19 LPTRLLALKHGADLVWSPEIIDKKLIQCQRQVNDTLKTVDFIIPAKREGTEPGVVFRTVP 78 L R L + D+ ++P I K I+ ++ + L EG P Sbjct: 13 LAFRQLVRVYDVDVCFTPMIYAKNFIESEKCRSSELSVC--------EGDSP-------- 56 Query: 79 EVEHGKLIFQIGTSTPSLAVEAALKVIEDVAGIDVNAGCPKHFSIHSGMGAALLQTPDKL 138 LI Q T P + EAA V + G+D+N GCPKH G G+ALL P+ Sbjct: 57 ------LIVQFATDDPFVLSEAAEMVYKCSTGVDLNCGCPKHDVRSKGFGSALLSKPE-- 108 Query: 139 CSILIELVEKVGKIYGKP---ISVKIRILKDEEDTLTLVEKLCATGITNLTVHCRTTPMR 195 +L ++V + P +S+KIRI D E T+ L K A G+T+LTVH RT R Sbjct: 109 --LLADMVRQTRARIPDPDFSVSLKIRINHDIEKTVDLCRKAEAAGVTHLTVHGRTPSQR 166 Query: 196 NRESPIRAYIPKIYEICERNKVSLIMNGAIRDKEHFEQLRSDLNLPKTIGGMMADCAERN 255 I+A + + + V +I NG I +E L + G M A+ N Sbjct: 167 AEPIDIQA----LRIVKDSVSVPIIANGGITTREEALFLAEQTGVD---GIMAANGLLDN 219 Query: 256 PTVFSESPLPWFKAVKEYLDIANQY 280 P +F+ V+ ++ ++ +Y Sbjct: 220 PALFAGHEHTPSDCVENFMRLSREY 244 >ECU07g1610 [J] KOG2335 tRNA-dihydrouridine synthase Length = 341 Score = 77.8 bits (190), Expect = 2e-14 Identities = 78/300 (26%), Positives = 124/300 (41%), Gaps = 37/300 (12%) Query: 10 LAPMVRAGELPTRLLALKHGADLVWSPEIIDKKLIQCQRQVNDTLKTVDFIIPAKREGTE 69 +APMV E R L+ +HGA++ ++ +++ C + + V EG Sbjct: 15 VAPMVGNSEEAWRRLSKRHGANIFYT------EMVHCDSFLRGSRNPVKNRWYTTSEGDR 68 Query: 70 PGVVFRTVPEVEHGKLIFQIGTSTPSLAVEAALKVIEDVAGIDVNAGCPKHFSIHSGMGA 129 P L+ QI ++P + +EAAL + + IDVN GCP+ + G G Sbjct: 69 P--------------LVVQICGNSPEVMLEAALIIQDHCDAIDVNFGCPQKVARKGGYG- 113 Query: 130 ALLQTPDKLCSILIELVEKVGKIYGKPISVKIRILKDEEDTLTLVEKLCATGITNLTVHC 189 A LQ KL E+V+ + P+ KIR+ E T+ + + G + L VH Sbjct: 114 AYLQENWKLTG---EIVKVLSSGLNVPVFCKIRVFGSIEKTVEYAKMIEEAGCSLLAVHG 170 Query: 190 RTTPMRNRESPIRAYIPKIYEICERNKVSLIMNGAIRDKEHFEQLRSDLNLPKTIGGMMA 249 RT R ++ I I E ++ ++ NG I H + R L G M+ Sbjct: 171 RTRDQRGAAMGFASW-KHIRAIKENLRIPVLSNGNI--MTHHDVWRC-LEYTGCDGVMVG 226 Query: 250 DCAERNPTVFSESPLPWFKAVKEYLDIANQY---------NHHPANVKYMMNRMTPGKSP 300 + NP +F+ + + EYLDI ++ H + Y M PGK P Sbjct: 227 EAHLHNPLIFTGEDRSCLEIIGEYLDICMEFPGSADVRHIKSHMFRLLYNYFSMNPGKQP 286 >7298533 [J] KOG2335 tRNA-dihydrouridine synthase Length = 396 Score = 77.0 bits (188), Expect = 4e-14 Identities = 69/280 (24%), Positives = 126/280 (44%), Gaps = 42/280 (15%) Query: 9 VLAPMVRAGELPTRLLALKHGADLVWSPEIIDKKLIQCQRQVNDTLKTVDFIIPAKREGT 68 V APMVR +L R L +G L ++P +I + ++ + T Sbjct: 26 VSAPMVRYSKLEFRRLVRLNGVQLAFTPMMISDSINNSEKARQNEFST------------ 73 Query: 69 EPGVVFRTVPEVEHGKLIFQIGTSTPSLAVEAALKVIEDVAGIDVNAGCPKHFSIHSGMG 128 + LI Q P+ V +A + V GID+N GCP+ +++ G G Sbjct: 74 ----------GADDQPLIAQFAAKDPTEFVTSAQLIYPYVDGIDLNCGCPQSWAMAKGYG 123 Query: 129 AALLQTPDKLCSILIELVEKVGKIYGKPISVKIRILKDEED---TLTLVEKLCATGITNL 185 +L+ P+ + ++ E+ + + +SVK+R+L EE T+ L +L + G+T L Sbjct: 124 CGMLRQPELVHQVVQEVRRTLPGDFS--VSVKMRLLGGEESLQRTIDLARQLESAGVTFL 181 Query: 186 TVHCRTTPMRNRESPIRAYIPKIYEICERNKVSLIMNGAIRDKEHFEQLRSDLNLPKTIG 245 T+H RT ++ + + IP + ++ + ++ LI+NG + E R ++ + G Sbjct: 182 TLHGRTPAQKHSKDTLD--IPAMSQVRQSLQIPLIVNGNV------ESYRDACDMHEQTG 233 Query: 246 G---MMADCAERNPTVFS----ESPLPWFKAVKEYLDIAN 278 M A NP +F+ + V+++LDIA+ Sbjct: 234 AAGVMAARGLLANPALFNSNYPDGKTTPLSCVQQWLDIAS 273 >7296234 [J] KOG2335 tRNA-dihydrouridine synthase Length = 358 Score = 77.0 bits (188), Expect = 4e-14 Identities = 81/331 (24%), Positives = 131/331 (39%), Gaps = 56/331 (16%) Query: 7 KLVLAPMVRAGELPTRLLALKHGADLVWSPEIIDKKLIQCQRQVNDTLKTVDFIIPAKRE 66 + V+APMV EL R+L ++GA+L +SP + D L+T Sbjct: 29 RYVVAPMVDQSELAWRMLCRRYGAELCYSPMYHANLFATDPKYRKDALQTCP-------- 80 Query: 67 GTEPGVVFRTVPEVEHGKLIFQIGTSTPSLAVEAALKVIEDVAGIDVNAGCPKHFSIHSG 126 E LI Q + ++AAL + +D+N GCP+ + Sbjct: 81 --------------EDRPLIIQFCGNDAQQILDAALLAQDHCDAVDINLGCPQAIAKRGH 126 Query: 127 MGAALLQTPDKLCSILIELVEKVGKIYGKPISVKIRILKDEEDTLTLVEKLCATGITNLT 186 G+ L + L I+ L K+ P++ KIRI +D E T+ + L A G LT Sbjct: 127 YGSFLQDEWELLTEIVSTLHAKLAV----PVTCKIRIFEDLEKTIRYAKMLEAAGCQLLT 182 Query: 187 VHCRTTPMRNRESPIR--AYIPKIYEICERNKVSLIMNGAIRDKEHFEQLRSDLNLPKTI 244 VH RT R ++ P+ A I + + K+ ++ NG I + + ++ + Sbjct: 183 VHGRT---REQKGPLTGVANWNYIKNVRQHIKIPMLANGNILALDDVHRCLTETGVD--- 236 Query: 245 GGMMADCAERNPTVFSESPLPWFKAVKEYLDIANQYN--------------HHPANVKYM 290 G M A+ NP +F P ++ EYL++ + HH N++ Sbjct: 237 GVMSAEGNLHNPAIFKGVSPPVWQMAHEYLELVQLHPCPSSFIRGHLFKLFHHIMNIRQ- 295 Query: 291 MNRMTPGKSPFYQYFTQCRKLSDFAHVCQQL 321 S QY +L F V QQ+ Sbjct: 296 -------NSELRQYLATANQLVQFQAVVQQV 319 >SPBC36B7.04 [J] KOG2335 tRNA-dihydrouridine synthase Length = 399 Score = 73.6 bits (179), Expect = 4e-13 Identities = 89/364 (24%), Positives = 147/364 (39%), Gaps = 46/364 (12%) Query: 7 KLVLAPMVRAGELPTRLLALKHGADLVWSPEIIDKKLIQCQRQVNDTLKTVDFIIPAKRE 66 K +LAPMV ELP R+LA + GADL +SP + + + N T Sbjct: 19 KRILAPMVDQSELPWRILARRSGADLCYSPMFHSRLFGESEDYRNKVFST---------- 68 Query: 67 GTEPGVVFRTVPEVEHGKLIFQIGTSTPSLAVEAALKVIEDVAGIDVNAGCPKHFSIHSG 126 RT+P E LI Q + P + ++AA +DVN GCP+ + Sbjct: 69 --------RTIP--EERPLIIQFCGNDPEIMLKAAKIAAPYCDAVDVNLGCPQGIAKKGK 118 Query: 127 MGAALLQTPDKLCSILIELVEKVGKIYGKPISVKIRILKDEEDTLTLVEKLCATGITNLT 186 G+ L + + + SI+ +L ++ P++ KIRI D + TL + + G + L Sbjct: 119 YGSFLQENWNLIESIITKLHTEL----SIPVTAKIRIFPDPQKTLDYAKMILKAGASILA 174 Query: 187 VHCRTTPMRNRESPIRAYIPKIYEICERNKVS---LIMNGAIRDKEHFEQLRSDLNLPKT 243 VH R + + I + + ++ +N S L NG I H + + + Sbjct: 175 VHGRLREQKGHFTGIADW--EQIQMLRKNLPSETVLFANGNIL---HAQDIDRCIKYTGV 229 Query: 244 IGGMMADCAERNPTVF--SESPLPWF-----KAVKEYLDIANQYNHHP--ANVKYMMNRM 294 G + A+ + NP +F SPL +EYL+I ++ +++ + + Sbjct: 230 DGVLSAEGSLYNPRIFLPPSSPLMTLYPRIDDMCEEYLNIIREFKLESDYSSLSAIKGHL 289 Query: 295 TPGKSPFYQYFTQCRKLSDFAHVCQQLGSSGGALNDPIPFLIQEREKEMAEKQRLNNLKS 354 P T R S A C P+ ++++R E EK +N K Sbjct: 290 FKLMRPLLSIHTDIR--SKLAQGCTPRDFE---TFPPVVAMLRKRLLECEEKGEINEDKD 344 Query: 355 TKTS 358 K S Sbjct: 345 VKES 348 >YML080w [J] KOG2335 tRNA-dihydrouridine synthase Length = 423 Score = 61.6 bits (148), Expect = 2e-09 Identities = 69/311 (22%), Positives = 121/311 (38%), Gaps = 37/311 (11%) Query: 9 VLAPMVRAGELPTRLLALKHGADLVWSPEIIDKKLIQCQRQVNDTLKTVDFIIPAKREGT 68 ++APMV EL R+L+ ++GA L ++P + K ++ D ++D Sbjct: 32 IVAPMVDQSELAWRILSRRYGATLAYTPMLHAKLFATSKKYREDNWSSLD---------- 81 Query: 69 EPGVVFRTVPEVEHGKLIFQIGTSTPSLAVEAALKVIEDVAGIDVNAGCPKHFSIHSGMG 128 L+ Q + P + AA V + +D+N GCP+ + G Sbjct: 82 ---------GSSVDRPLVVQFCANDPEYLLAAAKLVEDKCDAVDLNLGCPQGIAKKGHYG 132 Query: 129 AALLQTPDKLCSILIELVEKVGKIYGKPISVKIRILKDEEDTLTLVEKLCATGITNLTVH 188 + L++ D ++ L+ + K P++ KIRI D E +L + + G LTVH Sbjct: 133 SFLMEEWD----LIHNLINTLHKNLKVPVTAKIRIFDDCEKSLNYAKMVLDAGAQFLTVH 188 Query: 189 CRTTPMRNRESPIRAY--IPKIYEICERNKVSLIMNGAIRDKEHFEQLRSDLNLPKTIGG 246 R + +++ + + I + + + V NG I E + + Sbjct: 189 GRVREQKGQKTGLANWETIKYLRDNLPKETV-FFANGNILYPEDISRCMEHIGADAV--- 244 Query: 247 MMADCAERNPTVFS-------ESPLPWF-KAVKEYLDIANQYNHHPANVKYMMNRMTPGK 298 M A+ NP VF+ E P K ++EY I + A+ M + Sbjct: 245 MSAEGNLYNPGVFNVGQTKNKEKIFPRVDKIIREYFQIVKECQESKASKTAMKSHFFKIL 304 Query: 299 SPFYQYFTQCR 309 PF + T R Sbjct: 305 RPFLPHHTDIR 315 >YLR401c [R] KOG2333 Uncharacterized conserved protein Length = 609 Score = 60.1 bits (144), Expect = 5e-09 Identities = 74/300 (24%), Positives = 119/300 (39%), Gaps = 52/300 (17%) Query: 7 KLVLAPMVRAGELPTRLLALKHGADLVWSPEIIDKKLIQCQRQVNDTLKTVDFIIPAKRE 66 K +++P+ G LP R L K GAD+ +S + LIQ ++ +P Sbjct: 294 KKIVSPLTTVGNLPYRRLMRKLGADVTYSEMALAVPLIQGTNS--------EWALPKAHT 345 Query: 67 GTEPGVVFRTVPEVEHGKLIFQIGTSTPSLAVEAALKVIEDVAGIDVNAGCPKHFSIHSG 126 PG G + + A EA + +++ I++N+GCP G Sbjct: 346 SEFPGF----------GVQVACSKAWQAAKAAEALANSVSEISEINLNSGCPIDLLYRQG 395 Query: 127 MGAALLQTPDKL--CSILIELVEKVGKIYGKPISVKIRILKDEEDTLT--LVEKLC-ATG 181 G+ALL P ++ C + V K PI+VKIR E + LV++L T Sbjct: 396 SGSALLDNPARMIRCLNAMNYVSK-----DIPITVKIRTGTKEGHPIAEGLVKRLVNETD 450 Query: 182 ITNLTVHCRTTPMRNRESPIRAYIPKIYEIC------------------ERNKVSLIMNG 223 + +T+H R+ R +S Y+ ++ + +N++ + NG Sbjct: 451 VAAITLHGRSRQQRYTKSADWDYVSQVADTLRSAEADFIETEQGKEGRDSKNRIQFVGNG 510 Query: 224 AIRDKEHFEQLRSDLNLPKTIGG-MMADCAERNPTVFSESPLPWF--KAVKEYLDIANQY 280 D +FE LN + I M+A A P +F E + K E LDI Y Sbjct: 511 ---DVNNFEDWYRYLNGNENIDSVMVARGALIKPWIFEEVESQQYLDKTSTERLDILRDY 567 >At4g38890 [R] KOG2333 Uncharacterized conserved protein Length = 700 Score = 57.8 bits (138), Expect = 2e-08 Identities = 66/268 (24%), Positives = 112/268 (41%), Gaps = 39/268 (14%) Query: 1 MVQYAGKLVLAPMVRAGELPTRLLALKHGADLVWSPEIIDKKLIQCQRQVNDTLK--TVD 58 ++ + KL LAP+ G LP R L GAD+ + L+Q Q L+ + + Sbjct: 342 LIDFRDKLYLAPLTTVGNLPFRRLCKVLGADVTCGEMAMCTNLLQGQASEWALLRRHSSE 401 Query: 59 FIIPAKREGTEPGVVFRTVPEVEHGKLIFQIGTSTPSLAVEAALKVIEDVAGIDVNAGCP 118 + + G+ P V R V ++ V ID+N GCP Sbjct: 402 DLFGVQICGSYPDTVSRVVELIDREC----------------------TVDFIDINMGCP 439 Query: 119 KHFSIHSGMGAALLQTPDKLCSILIELVEKVGKIYGKPISVKIR--ILKDEEDTLTLVEK 176 ++ G+ALL P ++ +I VE I PI++K+R + + +L+ Sbjct: 440 IDMVVNKSAGSALLNKPLRMKNI----VEVSSSIVETPITIKVRTAFFEGKNRIDSLIAD 495 Query: 177 LCATGITNLTVHCRTTPMRNRESPIRAYIPKIYEICERN---KVSLIMNGAIRDKEHFEQ 233 + G T +T+H R+ R +S YI + C +N + +I NG + + + Sbjct: 496 IGNWGATAVTIHGRSRQQRYSKSADWDYIYQ----CTKNATTNLQVIGNGDVYSYLDWNK 551 Query: 234 LRSDLNLPKTIGGMMADCAERNPTVFSE 261 +SD P+ M+A A P +F+E Sbjct: 552 HKSD--CPELSSCMIARGALIKPWIFTE 577 >Hs22052882 [R] KOG2333 Uncharacterized conserved protein Length = 650 Score = 57.4 bits (137), Expect = 3e-08 Identities = 72/284 (25%), Positives = 112/284 (39%), Gaps = 38/284 (13%) Query: 6 GKLVLAPMVRAGELPTRLLALKHGADLVWSPEIIDKKLIQCQRQVNDTLK--TVDFIIPA 63 GKL LAP+ G LP R + + GAD+ + L+Q Q LK + I Sbjct: 305 GKLYLAPLTTCGNLPFRRICKRFGADVTCGEMAVCTNLLQGQMSEWALLKRHQCEDIFGV 364 Query: 64 KREGTEPGVVFRTVPEVEHGKLIFQIGTSTPSLAVEAALKVIEDVAGIDVNAGCPKHFSI 123 + EG P T + E + +E V +D+N GCP Sbjct: 365 QLEGAFP---------------------DTMTKCAELLSRTVE-VDFVDINVGCPIDLVY 402 Query: 124 HSGMGAALLQTPDKLCSILIELVEKVGKIYGKPISVKIRILKDEEDTLT--LVEKLCATG 181 G G AL+ K ++V + ++ P++VKIR E L L+ +L G Sbjct: 403 KKGGGCALMNRSTK----FQQIVRGMNQVLDVPLTVKIRTGVQERVNLAHRLLPELRDWG 458 Query: 182 ITNLTVHCRTTPMRNRESPIRAYIPKIYEICERNKVSLIMNGAIRDKEHFEQLRSDLNLP 241 + +T+H R+ R + YI + + + + L NG I FE + Sbjct: 459 VALVTLHGRSREQRYTKLADWQYIEECVQAA--SPMPLFGNGDILS---FEDANRAMQTG 513 Query: 242 KTIGGMMADCAERNPTVFSE--SPLPWFKAVKEYLDIANQYNHH 283 T G M+A A P +F+E W + E LDI + ++ Sbjct: 514 VT-GIMIARGALLKPWLFTEIKEQRHWDISSSERLDILRDFTNY 556 >SPAC16.04 [R] KOG2333 Uncharacterized conserved protein Length = 617 Score = 49.3 bits (116), Expect = 9e-06 Identities = 52/216 (24%), Positives = 91/216 (42%), Gaps = 26/216 (12%) Query: 1 MVQYAGKLVLAPMVRAGELPTRLLALKHGADLVWSPEIIDKKLIQCQRQVNDTLKTVDFI 60 ++ + + +LAP+ G P R L GAD +S + L+Q + ++ +++ Sbjct: 234 LIDWRDRKILAPLTTVGNPPFRRLCGSLGADTFYSEMAMCYPLMQGHQPEWALVRGLNYE 293 Query: 61 IPAKREGTEPGVVFRTVPEVEHGKLIFQIGTSTPSLAVEAALKVIEDVAGID---VNAGC 117 R G G L Q+ T A + A + E G+D +N GC Sbjct: 294 REMMRGG-------------RRGILGVQLATGKLWQATKTAQVIAEQCDGVDFLDLNCGC 340 Query: 118 PKHFSIHSGMGAALLQTPDKLCSILIELVEKVGKIYGKPISVKIRILKDEEDTLTLVEKL 177 P G G++LL+ P +L L + G+I P++VK+R+ +D +V+ L Sbjct: 341 PIDLVFRQGAGSSLLENPGRLLRNLQGMDAVSGQI---PVTVKLRM--GNKDDHPVVKNL 395 Query: 178 CA-----TGITNLTVHCRTTPMRNRESPIRAYIPKI 208 T + T+H R+ R ++ YI +I Sbjct: 396 IGRIFNETNTSAATLHGRSRQQRYSKNANWDYIGEI 431 Database: KOG eukaryal database 04/03 Posted date: Apr 14, 2003 1:07 PM Number of letters in database: 30,389,216 Number of sequences in database: 60,738 Lambda K H 0.319 0.136 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 22,087,261 Number of Sequences: 60738 Number of extensions: 960956 Number of successful extensions: 2263 Number of sequences better than 1.0e-05: 21 Number of HSP's better than 0.0 without gapping: 7 Number of HSP's successfully gapped in prelim test: 14 Number of HSP's that attempted gapping in prelim test: 2216 Number of HSP's gapped (non-prelim): 22 length of query: 359 length of database: 30,389,216 effective HSP length: 108 effective length of query: 251 effective length of database: 23,829,512 effective search space: 5981207512 effective search space used: 5981207512 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits)