ORF      STATUS       Function Best COG  Functional category                                          Pathways and functional systems
r_klactVI1662   suspect: LH   Y     KOG2992  Nuclear structure                                              Nucleolar GTPase/ATPase p130

BLASTP 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= r_klactVI1662 592103  595957 1285 
         (1285 letters)

Database: KOG eukaryal database 04/03 
           60,738 sequences; 30,389,216 total letters

Searching..................................................done

Color Key for Alignment Scores:   


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1711.05 [Y] KOG2992 Nucleolar GTPase/ATPase p130                   54   1e-06

>SPBC1711.05 [Y] KOG2992 Nucleolar GTPase/ATPase p130
          Length = 451

 Score = 54.3 bits (129), Expect = 1e-06
 Identities = 54/290 (18%), Positives = 115/290 (39%), Gaps = 11/290 (3%)

Query: 793  MNIDKFGSMLSDQQRLVKPLDFSVKIKSTVIEEEDSHSTLPEDDGLEVDEDDSLITTNTI 852
            +  +  G     ++ L K  D S KI       E +HS+  E  G     D+S  +++  
Sbjct: 61   LTTEDVGKHKKTKESLEKSNDDSQKISKKGAPPEKAHSS-SEASGSGSSSDESDSSSSES 119

Query: 853  QKLKAQLSNISSXXXXXXXXXXXXXXXXXXXXXXXXXXSTQHMDSLEVQNVVDNVIETKE 912
            +       + SS                          S++  DS    +  ++   +++
Sbjct: 120  ESSSEDNDSSSSSSDSESESSSEDSDSSSSSSDSESESSSEGSDSSSSSSSSESESSSED 179

Query: 913  NPCT------DRQFSVSDANSKSDVPALQNEEVSVDTASIAINSVEIPSTPANDTETSLS 966
            N  +      + + S  D++S S     ++E  S  + S + +S     + + D ++S S
Sbjct: 180  NDSSSSSSDSESESSSEDSDSSSSSSDSESESSSEGSDSSSSSSSSESESSSEDNDSSSS 239

Query: 967  SKEANIEESKPEKILEQGFESAKPLSQDEQKRVSCDTAGSFQDASSVLIRDDSSLNSETH 1026
            S ++  E S  +         ++  S  +    S +++ S  D+SS    D S   SE+ 
Sbjct: 240  SSDSESESSSEDSDSSSSSSDSESESSSKDSDSSSNSSDSEDDSSS----DSSDSESESS 295

Query: 1027 NTGQEDHNQSSVATTAGSAVTEKQNVDTEIGSDRNSKAISESDKNDEATS 1076
            +   +  + SS + ++ S+     N DT    + ++++ + S  ++E+TS
Sbjct: 296  SEDSDSTSSSSDSDSSSSSEDGNSNTDTTTSGEVSAQSSTNSTSSEESTS 345



 Score = 52.4 bits (124), Expect = 5e-06
 Identities = 55/266 (20%), Positives = 109/266 (40%), Gaps = 6/266 (2%)

Query: 824  EEEDSHSTLPEDDGLEVDED-DSLITTNTIQKLKAQLSNISSXXXXXXXXXXXXXXXXXX 882
            E+ DS S+  + +     ED DS  +++  +   +   + SS                  
Sbjct: 124  EDNDSSSSSSDSESESSSEDSDSSSSSSDSESESSSEGSDSSSSSSSSESESSSEDNDSS 183

Query: 883  XXXXXXXXSTQHMDSLEVQNVVDNVIETKENPCTDRQFSVSDANSKSDVPALQNEEVSVD 942
                     +   DS    +  D+  E+     +D   S S + S+S      +   S D
Sbjct: 184  SSSSDSESESSSEDSDSSSSSSDSESESSSEG-SDSSSSSSSSESESSSEDNDSSSSSSD 242

Query: 943  TASIAINSVEIPSTPANDTETSLSSKEANIEESKPEKILEQGFESAKPLSQDEQKRVSCD 1002
            + S + +     S+ ++D+E+  SSK+++   +  +   +   +S+   S+ E      D
Sbjct: 243  SESESSSEDSDSSSSSSDSESESSSKDSDSSSNSSDSEDDSSSDSSD--SESESSSEDSD 300

Query: 1003 TAGSFQDASSVLIRDDSSLNSETHNTGQEDHNQSSVATTAGSAVTEKQNVDTEIGSDRNS 1062
            +  S  D+ S    +D + N++T  +G E   QSS  +T+    T  ++ D+    D++ 
Sbjct: 301  STSSSSDSDSSSSSEDGNSNTDTTTSG-EVSAQSSTNSTSSEESTSVKDEDSSKIHDKSL 359

Query: 1063 KAISESDKNDEATSKS-ISLTPNNRL 1087
            K   E D++  +T  S  + TP  R+
Sbjct: 360  KRKHEDDESSTSTKSSRTTKTPFTRV 385


  Database: KOG eukaryal database 04/03
    Posted date:  Apr 14, 2003  1:07 PM
  Number of letters in database: 30,389,216
  Number of sequences in database:  60,738
  
Lambda     K      H
   0.312    0.129    0.367 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 72,259,522
Number of Sequences: 60738
Number of extensions: 3058013
Number of successful extensions: 8985
Number of sequences better than 1.0e-05: 1
Number of HSP's better than  0.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 8967
Number of HSP's gapped (non-prelim): 12
length of query: 1285
length of database: 30,389,216
effective HSP length: 118
effective length of query: 1167
effective length of database: 23,222,132
effective search space: 27100228044
effective search space used: 27100228044
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)