ORF      STATUS       Function Best COG  Functional category                                          Pathways and functional systems
r_klactVI1789   suspect: LH   S     KOG2678  Function unknown                                               Predicted membrane protein

BLASTP 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= r_klactVI1789 641043 640264 -260 
         (260 letters)

Database: KOG eukaryal database 04/03 
           60,738 sequences; 30,389,216 total letters

Searching..................................................done

Color Key for Alignment Scores:   


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

YGL098w [S] KOG2678 Predicted membrane protein                        131   1e-30

>YGL098w [S] KOG2678 Predicted membrane protein
          Length = 245

 Score =  131 bits (329), Expect = 1e-30
 Identities = 77/244 (31%), Positives = 125/244 (50%), Gaps = 8/244 (3%)

Query: 24  QDDEDPFYHYLISTKLATNLNTVRKLAIKDNL----DDPSSDAIDRYQKNXXXXXXXXXX 79
           +   DPF  Y++S+K  TNLN +R+ A+   L    D+  S+   RYQ            
Sbjct: 3   ETSNDPFLSYVLSSKQLTNLNRLRRKAVTKQLGSSDDNKVSEEFLRYQHTYQREAFEYLQ 62

Query: 80  XXXXXXXXXQQKYDAYQESQKKRRYSVDFDATPDVPIGDEDDVDIISNVEAINDNDSLKE 139
                    + +Y+ YQ S K RRYS+D D+   V    + +      ++   D++++ E
Sbjct: 63  TKHDAHKIMESQYEQYQSSSKTRRYSIDLDSVDAVDTESQTEYPNEEFIDRNEDSEAVME 122

Query: 140 LRQRLMGKRRDSA---DTEGESFDKQMQIQDDLQKELVEDMSQLVSGLRQGAEAFQNAIE 196
           LR+RL+GK ++     +T  +S D+Q++ QD LQ++L++DMS+LV  L+QGA AFQ+A++
Sbjct: 123 LRKRLLGKGQNKGLGYETT-KSVDRQIEDQDTLQQDLIQDMSKLVGSLKQGAVAFQSALD 181

Query: 197 HDSTVLKAAEIGLHVTXXXXXXXXXXXXXYHNEKIGFLMKXXXXXXXXXXXXVTYLVIKV 256
            D  VL AAEIG+ V              Y   K+ +L               T+++I++
Sbjct: 182 EDKQVLGAAEIGIQVASQGLMDVSGKLRKYDKSKLSYLFYITVFIFMILGLVFTFIIIQL 241

Query: 257 FPDL 260
           FP L
Sbjct: 242 FPAL 245


  Database: KOG eukaryal database 04/03
    Posted date:  Apr 14, 2003  1:07 PM
  Number of letters in database: 30,389,216
  Number of sequences in database:  60,738
  
Lambda     K      H
   0.314    0.134    0.363 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,240,195
Number of Sequences: 60738
Number of extensions: 446222
Number of successful extensions: 1412
Number of sequences better than 1.0e-05: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1409
Number of HSP's gapped (non-prelim): 1
length of query: 260
length of database: 30,389,216
effective HSP length: 104
effective length of query: 156
effective length of database: 24,072,464
effective search space: 3755304384
effective search space used: 3755304384
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)