ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactVI1815 check: MH K KOG0385 Transcription Chromatin remodeling complex WSTF-ISWI, small subunit
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactVI1815 645650 648937 1096
(1096 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YBR245c [K] KOG0385 Chromatin remodeling complex WSTF-ISWI small... 1398 0.0
YOR304w [K] KOG0385 Chromatin remodeling complex WSTF-ISWI small... 937 0.0
Hs21071044 [K] KOG0385 Chromatin remodeling complex WSTF-ISWI sm... 815 0.0
Hs21071058 [K] KOG0385 Chromatin remodeling complex WSTF-ISWI sm... 806 0.0
CE00789 [K] KOG0385 Chromatin remodeling complex WSTF-ISWI small... 796 0.0
Hs21071046 [K] KOG0385 Chromatin remodeling complex WSTF-ISWI sm... 774 0.0
7303422 [K] KOG0385 Chromatin remodeling complex WSTF-ISWI small... 774 0.0
At3g06400 [K] KOG0385 Chromatin remodeling complex WSTF-ISWI sma... 719 0.0
At5g18620 [K] KOG0385 Chromatin remodeling complex WSTF-ISWI sma... 705 0.0
ECU10g1320 [K] KOG0385 Chromatin remodeling complex WSTF-ISWI sm... 558 e-158
Hs4557447 [K] KOG0384 Chromodomain-helicase DNA-binding protein 414 e-115
Hs4557449 [K] KOG0384 Chromodomain-helicase DNA-binding protein 412 e-114
At5g19310 [BK] KOG0386 Chromatin remodeling complex SWI/SNF comp... 410 e-114
At2g13370 [K] KOG0384 Chromodomain-helicase DNA-binding protein 408 e-113
At3g06010 [BK] KOG0386 Chromatin remodeling complex SWI/SNF comp... 405 e-112
YIL126w [BK] KOG0386 Chromatin remodeling complex SWI/SNF compon... 405 e-112
Hs21071050 [BK] KOG0386 Chromatin remodeling complex SWI/SNF com... 401 e-111
Hs21071048 [BK] KOG0386 Chromatin remodeling complex SWI/SNF com... 401 e-111
SPAC1783.05 [K] KOG0384 Chromodomain-helicase DNA-binding protein 398 e-110
SPAC1250.01 [BK] KOG0386 Chromatin remodeling complex SWI/SNF co... 397 e-110
CE27114 [BK] KOG0386 Chromatin remodeling complex SWI/SNF compon... 396 e-110
CE05553 [BK] KOG0386 Chromatin remodeling complex SWI/SNF compon... 396 e-109
Hs21071056 [BK] KOG0386 Chromatin remodeling complex SWI/SNF com... 395 e-109
CE03657 [R] KOG0383 Predicted helicase 395 e-109
7294205 [BK] KOG0386 Chromatin remodeling complex SWI/SNF compon... 395 e-109
At5g66750 [K] KOG0385 Chromatin remodeling complex WSTF-ISWI sma... 391 e-108
YOR290c [BK] KOG0386 Chromatin remodeling complex SWI/SNF compon... 389 e-107
CE17716 [R] KOG0383 Predicted helicase 387 e-107
Hs20533808 [R] KOG0383 Predicted helicase 385 e-106
SPAC3G6.01 [K] KOG0384 Chromodomain-helicase DNA-binding protein 384 e-106
YER164w [K] KOG0384 Chromodomain-helicase DNA-binding protein 383 e-106
Hs20536191 [K] KOG0385 Chromatin remodeling complex WSTF-ISWI sm... 383 e-105
7295870 [K] KOG0384 Chromodomain-helicase DNA-binding protein 382 e-105
Hs4557453 [R] KOG0383 Predicted helicase 380 e-105
CE11572 [K] KOG0384 Chromodomain-helicase DNA-binding protein 378 e-104
Hs21914927 [K] KOG0385 Chromatin remodeling complex WSTF-ISWI sm... 376 e-103
Hs4557451 [R] KOG0383 Predicted helicase 372 e-102
7293795 [R] KOG0383 Predicted helicase 372 e-102
Hs21362042 [K] KOG0384 Chromodomain-helicase DNA-binding protein 365 e-100
Hs22047966 [K] KOG0384 Chromodomain-helicase DNA-binding protein 359 1e-98
Hs22047300 [K] KOG0384 Chromodomain-helicase DNA-binding protein 358 3e-98
At2g25170 [R] KOG0383 Predicted helicase 357 4e-98
CE18196 [K] KOG0384 Chromodomain-helicase DNA-binding protein 353 1e-96
At2g28290 [BK] KOG0386 Chromatin remodeling complex SWI/SNF comp... 352 2e-96
At2g44980 [K] KOG0385 Chromatin remodeling complex WSTF-ISWI sma... 342 1e-93
YFR038w [K] KOG0385 Chromatin remodeling complex WSTF-ISWI small... 339 1e-92
At5g44800 [R] KOG0383 Predicted helicase 330 1e-89
ECU01g0350 [K] KOG0384 Chromodomain-helicase DNA-binding protein 328 2e-89
At2g46020 [BK] KOG0386 Chromatin remodeling complex SWI/SNF comp... 327 8e-89
SPBP35G2.10 [R] KOG0383 Predicted helicase 320 1e-86
Hs14149730 [B] KOG0389 SNF2 family DNA-dependent ATPase 316 1e-85
7297570 [B] KOG0389 SNF2 family DNA-dependent ATPase 291 5e-78
Hs4557565 [KL] KOG0387 Transcription-coupled repair protein CSB/... 276 1e-73
YPL082c [K] KOG0392 SNF2 family DNA-dependent ATPase domain-cont... 271 5e-72
SPBC1826.01c [K] KOG0392 SNF2 family DNA-dependent ATPase domain... 265 4e-70
At2g02090 [B] KOG0389 SNF2 family DNA-dependent ATPase 263 1e-69
SPCC1235.05c [B] KOG0389 SNF2 family DNA-dependent ATPase 262 2e-69
SPAC20G8.08c [B] KOG0389 SNF2 family DNA-dependent ATPase 256 2e-67
At2g18760 [KL] KOG0387 Transcription-coupled repair protein CSB/... 256 2e-67
ECU09g0410 [KL] KOG0387 Transcription-coupled repair protein CSB... 250 1e-65
7300091 [K] KOG0392 SNF2 family DNA-dependent ATPase domain-cont... 248 4e-65
Hs17454125 [K] KOG0392 SNF2 family DNA-dependent ATPase domain-c... 244 5e-64
YJR035w [KL] KOG0387 Transcription-coupled repair protein CSB/RA... 240 8e-63
ECU03g1530 [K] KOG0392 SNF2 family DNA-dependent ATPase domain-c... 238 5e-62
YAL019w [B] KOG0389 SNF2 family DNA-dependent ATPase 235 3e-61
SPCP25A2.02c [KL] KOG0387 Transcription-coupled repair protein C... 235 3e-61
At3g57300 [L] KOG0388 SNF2 family DNA-dependent ATPase 228 4e-59
CE25717 [R] KOG0391 SNF2 family DNA-dependent ATPase 224 6e-58
Hs5730067 [R] KOG0391 SNF2 family DNA-dependent ATPase 221 5e-57
At3g54280 [K] KOG0392 SNF2 family DNA-dependent ATPase domain-co... 220 8e-57
YDR334w [R] KOG0391 SNF2 family DNA-dependent ATPase 218 3e-56
ECU09g1890 [L] KOG0388 SNF2 family DNA-dependent ATPase 218 5e-56
At3g12810 [R] KOG0391 SNF2 family DNA-dependent ATPase 215 3e-55
YGL150c [L] KOG0388 SNF2 family DNA-dependent ATPase 211 5e-54
YGL163c [L] KOG0390 DNA repair protein SNF2 family 209 2e-53
Hs6912622_2 [L] KOG0390 DNA repair protein SNF2 family 208 4e-53
CE11028 [KL] KOG0387 Transcription-coupled repair protein CSB/RA... 203 1e-51
SPAC15A10.03c [L] KOG0390 DNA repair protein SNF2 family 201 7e-51
Hs13376715 [K] KOG0384 Chromodomain-helicase DNA-binding protein 200 1e-50
At5g63950 [KL] KOG0387 Transcription-coupled repair protein CSB/... 196 2e-49
At3g19210 [L] KOG0390 DNA repair protein SNF2 family 196 2e-49
Hs14767157 [K] KOG0385 Chromatin remodeling complex WSTF-ISWI sm... 195 3e-49
CE15856 [K] KOG0392 SNF2 family DNA-dependent ATPase domain-cont... 194 5e-49
CE25143 [L] KOG0390 DNA repair protein SNF2 family 194 6e-49
Hs4506397 [L] KOG0390 DNA repair protein SNF2 family 192 2e-48
7295868 [L] KOG0390 DNA repair protein SNF2 family 191 4e-48
HsM8922362 [K] KOG0385 Chromatin remodeling complex WSTF-ISWI sm... 188 3e-47
At4g31900 [R] KOG0383 Predicted helicase 187 6e-47
7300511 [L] KOG0388 SNF2 family DNA-dependent ATPase 182 3e-45
SPAC22F3.03c [L] KOG0390 DNA repair protein SNF2 family 174 9e-43
YBR073w [L] KOG0390 DNA repair protein SNF2 family 172 3e-42
CE16277 [B] KOG0389 SNF2 family DNA-dependent ATPase 171 8e-42
Hs15805014 [R] KOG0391 SNF2 family DNA-dependent ATPase 170 1e-41
SPAC3G6.12 [L] KOG0388 SNF2 family DNA-dependent ATPase 167 1e-40
CE23323 [L] KOG0390 DNA repair protein SNF2 family 157 7e-38
HsM14149926 [K] KOG0384 Chromodomain-helicase DNA-binding protein 155 3e-37
SPAC25A8.01c [B] KOG0389 SNF2 family DNA-dependent ATPase 149 2e-35
7296236 [K] KOG0384 Chromodomain-helicase DNA-binding protein 147 1e-34
At1g02670 [L] KOG1002 Nucleotide excision repair protein RAD16 146 2e-34
At1g03750 [KL] KOG0387 Transcription-coupled repair protein CSB/... 142 4e-33
Hs4757978 [K] KOG0385 Chromatin remodeling complex WSTF-ISWI sma... 127 1e-28
CE27689 [B] KOG1000 Chromatin remodeling protein HARP/SMARCAL1 D... 120 9e-27
CE27688 [B] KOG1000 Chromatin remodeling protein HARP/SMARCAL1 D... 120 9e-27
7293730 [R] KOG0383 Predicted helicase 120 9e-27
SPCC1620.14c [BK] KOG0386 Chromatin remodeling complex SWI/SNF c... 119 3e-26
7296909 [B] KOG1000 Chromatin remodeling protein HARP/SMARCAL1 D... 117 1e-25
SPBC582.10c [KL] KOG1001 Helicase-like transcription factor HLTF... 115 3e-25
Hs17437081 [B] KOG0389 SNF2 family DNA-dependent ATPase 113 1e-24
ECU06g0820 [B] KOG1000 Chromatin remodeling protein HARP/SMARCAL... 109 3e-23
Hs21071060 [B] KOG1000 Chromatin remodeling protein HARP/SMARCAL... 108 5e-23
At5g43530 [KL] KOG1001 Helicase-like transcription factor HLTF/D... 102 3e-21
Hs20336209 [K] KOG1015 Transcription regulator XNP/ATRX DEAD-box... 101 7e-21
Hs20336207 [K] KOG1015 Transcription regulator XNP/ATRX DEAD-box... 101 7e-21
Hs20336205 [K] KOG1015 Transcription regulator XNP/ATRX DEAD-box... 101 7e-21
At3g24340 [L] KOG0390 DNA repair protein SNF2 family 100 1e-20
At5g22750 [KL] KOG1001 Helicase-like transcription factor HLTF/D... 100 1e-20
At1g08600 [K] KOG1015 Transcription regulator XNP/ATRX DEAD-box ... 100 2e-20
SPBC23E6.02 [KL] KOG1001 Helicase-like transcription factor HLTF... 100 2e-20
CE17477 [R] KOG1016 Predicted DNA helicase DEAD-box superfamily 99 3e-20
YBR114w [L] KOG1002 Nucleotide excision repair protein RAD16 99 4e-20
7301343 [K] KOG1015 Transcription regulator XNP/ATRX DEAD-box su... 98 8e-20
SPCC330.01c [L] KOG1002 Nucleotide excision repair protein RAD16 97 2e-19
Hs20538502 [R] KOG1016 Predicted DNA helicase DEAD-box superfamily 97 2e-19
SPAC17A2.12 [KL] KOG1001 Helicase-like transcription factor HLTF... 95 5e-19
At5g05130 [KL] KOG1001 Helicase-like transcription factor HLTF/D... 94 2e-18
CE14110 [KL] KOG4439 RNA polymerase II transcription termination... 93 2e-18
At2g21450 [L] KOG0390 DNA repair protein SNF2 family 93 2e-18
7298963 [KL] KOG4439 RNA polymerase II transcription termination... 92 4e-18
At1g48310 [B] KOG1000 Chromatin remodeling protein HARP/SMARCAL1... 92 6e-18
CE11083 [KL] KOG4439 RNA polymerase II transcription termination... 91 8e-18
YLR032w [KL] KOG1001 Helicase-like transcription factor HLTF/DNA... 91 1e-17
At1g05480 [L] KOG0390 DNA repair protein SNF2 family 91 1e-17
7291744 [R] KOG1016 Predicted DNA helicase DEAD-box superfamily 91 1e-17
At3g16600 [KL] KOG1001 Helicase-like transcription factor HLTF/D... 90 2e-17
Hs21071052 [KL] KOG1001 Helicase-like transcription factor HLTF/... 89 3e-17
At2g16390 [L] KOG0390 DNA repair protein SNF2 family 89 3e-17
At1g11100 [KL] KOG1001 Helicase-like transcription factor HLTF/D... 89 3e-17
At1g50410 [KL] KOG1001 Helicase-like transcription factor HLTF/D... 88 8e-17
At1g61140 [KL] KOG1001 Helicase-like transcription factor HLTF/D... 87 2e-16
YOR191w [KL] KOG1001 Helicase-like transcription factor HLTF/DNA... 86 3e-16
CE17314 [K] KOG1015 Transcription regulator XNP/ATRX DEAD-box su... 86 3e-16
At1g05120 [L] KOG1002 Nucleotide excision repair protein RAD16 85 7e-16
At3g20010 [KL] KOG1001 Helicase-like transcription factor HLTF/D... 84 1e-15
Hs19923174 [KL] KOG4439 RNA polymerase II transcription terminat... 83 3e-15
7298962 [KL] KOG4439 RNA polymerase II transcription termination... 79 5e-14
CE11450 [KL] KOG4439 RNA polymerase II transcription termination... 77 1e-13
Hs22048060 [K] KOG0384 Chromodomain-helicase DNA-binding protein 71 1e-11
SPAC144.05 [L] KOG0298 DEAD box-containing helicase-like transcr... 69 3e-11
At5g07810 [B] KOG1000 Chromatin remodeling protein HARP/SMARCAL1... 67 1e-10
Hs17441908 [B] KOG1000 Chromatin remodeling protein HARP/SMARCAL... 64 2e-09
SPAC13G6.01c [KL] KOG1001 Helicase-like transcription factor HLT... 63 2e-09
At2g40770 [L] KOG0298 DEAD box-containing helicase-like transcri... 63 2e-09
At3g42670 [L] KOG0390 DNA repair protein SNF2 family 63 3e-09
Hs20532976 [B] KOG1000 Chromatin remodeling protein HARP/SMARCAL... 61 8e-09
At5g20420 [L] KOG0390 DNA repair protein SNF2 family 61 1e-08
CE23294 [KL] KOG4439 RNA polymerase II transcription termination... 60 1e-08
7295362 [L] KOG0298 DEAD box-containing helicase-like transcript... 57 2e-07
SPAC11E3.01c [R] KOG0391 SNF2 family DNA-dependent ATPase 54 1e-06
YLR247c [L] KOG0298 DEAD box-containing helicase-like transcript... 52 5e-06
Hs22054523 [L] KOG0298 DEAD box-containing helicase-like transcr... 51 9e-06
>YBR245c [K] KOG0385 Chromatin remodeling complex WSTF-ISWI small subunit
Length = 1129
Score = 1398 bits (3619), Expect = 0.0
Identities = 713/1020 (69%), Positives = 806/1020 (78%), Gaps = 15/1020 (1%)
Query: 3 SPEYLEKLKPFQEGIPNSIAEK-KERYLLPLRDLASGKRKFDEQGTVKRFEHLLGLSTLF 61
S EYLE LKPFQ G+P E K+RYLL +D A+GK KFD +GT KRFEHLL LS LF
Sbjct: 64 SEEYLENLKPFQVGLPPHDPESNKKRYLL--KD-ANGK-KFDLEGTTKRFEHLLSLSGLF 119
Query: 62 RHFIERKAAKDPRFREVLDTIDXXXXXXXXXXXXHTDARRRKTXXXXXXXXXXXXXXXXX 121
+HFIE KAAKDP+FR+VLD ++ H D RRRKT
Sbjct: 120 KHFIESKAAKDPKFRQVLDVLEENKANGKGKGK-HQDVRRRKTEHEEDAELLKEEDSDDD 178
Query: 122 XXXDVDFQFRESPAYVNGQLRPYQIQGLNWLVALHKNQLAGILADEMGLGKTLQTIAFLG 181
++FQFRESPAYVNGQLRPYQIQG+NWLV+LHKN++AGILADEMGLGKTLQTI+FLG
Sbjct: 179 ES--IEFQFRESPAYVNGQLRPYQIQGVNWLVSLHKNKIAGILADEMGLGKTLQTISFLG 236
Query: 182 YLRYIEKKNGPFLVIAPKSTLNNWLREINRWTPEVSAFILQGDKEERSKLCHDKLLACDF 241
YLRYIEK GPFLVIAPKSTLNNWLREINRWTP+V+AFILQGDKEER++L KLL CDF
Sbjct: 237 YLRYIEKIPGPFLVIAPKSTLNNWLREINRWTPDVNAFILQGDKEERAELIQKKLLGCDF 296
Query: 242 DICVASYEIIIREKASFKKIDWEYVVIDEAHRIKNEESMLSQVLREFSSRNRLLITGTPL 301
D+ +ASYEIIIREK+ KKI+WEY++IDEAHRIKNEESMLSQVLREF+SRNRLLITGTPL
Sbjct: 297 DVVIASYEIIIREKSPLKKINWEYIIIDEAHRIKNEESMLSQVLREFTSRNRLLITGTPL 356
Query: 302 QNNLHELWALLNFLLPDIFADSATXXXXXXXXXXXXXXXXVVKQLHTVLSPFLLRRIKND 361
QNNLHELWALLNFLLPDIF+D+ +VKQLHTVL PFLLRRIK+D
Sbjct: 357 QNNLHELWALLNFLLPDIFSDAQDFDDWFSSESTEEDQDKIVKQLHTVLQPFLLRRIKSD 416
Query: 362 VEGSLLPKKELNVYVGMSSMQKKWYKQILEKDIDAVNGSNGQKESKTRLLNIVMQLRKCC 421
VE SLLPKKELN+YVGMSSMQKKWYK+ILEKD+DAVNGSNG KESKTRLLNI+MQLRKCC
Sbjct: 417 VETSLLPKKELNLYVGMSSMQKKWYKKILEKDLDAVNGSNGSKESKTRLLNIMMQLRKCC 476
Query: 422 NHPYLFDGAEPGPPYTTDEHLVYNSAXXXXXXXXXXXXXEQGSRVLIFSQMSRVLDILED 481
NHPYLFDGAEPGPPYTTDEHLVYN+A E+GSRVLIFSQMSR+LDILED
Sbjct: 477 NHPYLFDGAEPGPPYTTDEHLVYNAAKLQVLDKLLKKLKEEGSRVLIFSQMSRLLDILED 536
Query: 482 YCYFREYEYCRIDGSTAHEDRINAIDDYNAPDSKKFIFLLTTRAGGLGINLTTADIVVLY 541
YCYFR YEYCRIDGSTAHEDRI AIDDYNAPDSKKF+FLLTTRAGGLGINLT+AD+VVLY
Sbjct: 537 YCYFRNYEYCRIDGSTAHEDRIQAIDDYNAPDSKKFVFLLTTRAGGLGINLTSADVVVLY 596
Query: 542 DSDWNPQADLQAMDRAHRIGQKKQVRVFRFVTDNSVEEKILERATQKLKLDQLVIQQGRV 601
DSDWNPQADLQAMDRAHRIGQKKQV+VFR VTDNSVEEKILERATQKL+LDQLVIQQ R
Sbjct: 597 DSDWNPQADLQAMDRAHRIGQKKQVKVFRLVTDNSVEEKILERATQKLRLDQLVIQQNRT 656
Query: 602 TXXXXXXXXDSKEGLLSMIQHGAVDVFKSNDSSAMTSQTGTPHPXXXXXXXXXXXXXXXX 661
+ DSK+ LLSMIQHGA DVFKS S T GTP P
Sbjct: 657 SLKKKENKADSKDALLSMIQHGAADVFKSGTS---TGSAGTPEP-GSGEKGDDIDLDELL 712
Query: 662 XQSEDKTRSLNAKYATLGLDELQRFNQDSAYEWDGQNFKKKVEKDIINPLFIPPTKRERS 721
+SE+KT+SLNAKY TLGLD+LQ+FNQDSAYEW+GQ+FKKK+++DII+PL + PTKRER
Sbjct: 713 LKSENKTKSLNAKYETLGLDDLQKFNQDSAYEWNGQDFKKKIQRDIISPLLLNPTKRER- 771
Query: 722 TNANYSVDNYYKDVLNPGRNNQYTVPPKMPKLQPLNSHQLLRPQLKAIYEKERMWIAKKN 781
NYS+DNYYKDVLN GR++ + P+MPK +SHQL PQLK +YEKERMW AKK
Sbjct: 772 -KENYSIDNYYKDVLNTGRSSTPS-HPRMPKPHVFHSHQLQPPQLKVLYEKERMWTAKKT 829
Query: 782 NYVPNLDDVVTTYGXXXXXXXXXXXXXXXXXSIANAEPLTEEETNNKIEWEKEGFHNWNK 841
YVP +DDV YG S+ N++PLTEEE K +WE EGF NWNK
Sbjct: 830 GYVPTMDDVKAAYGDISDEEEKKQKLELLKLSVNNSQPLTEEEEKMKADWESEGFTNWNK 889
Query: 842 LDFRKFITASGKHGRNSIQAIAAEFGGSKTEEEVRAYAKAFWANLERVEDYERYVKNIET 901
L+FRKFIT SGK+GRNSIQAIA E KT EEVRAYAKAFW+N+ER+EDYE+Y+K IE
Sbjct: 890 LEFRKFITVSGKYGRNSIQAIARELAPGKTLEEVRAYAKAFWSNIERIEDYEKYLKIIEN 949
Query: 902 EEERVRRVKMNQEALRRKISQCANPLFELKLKFPPSTNNKRTFSEEEDRFILLMLFKYGL 961
EEE+++RVKM QEALRRK+S+ NP F+LKLK PPS+NNKRT+SEEEDRFILLMLFKYGL
Sbjct: 950 EEEKIKRVKMQQEALRRKLSEYKNPFFDLKLKHPPSSNNKRTYSEEEDRFILLMLFKYGL 1009
Query: 962 DRENVYEMIRDEIKHHPLFELDFFFQSRTPIELQRRTITLLQCLEKEFNTGIQKTDELND 1021
DR++VYE++RDEI+ PLFELDF+F+SRTP+EL RR TLLQCLEKEFN GI D D
Sbjct: 1010 DRDDVYELVRDEIRDCPLFELDFYFRSRTPVELARRGNTLLQCLEKEFNAGIVLDDATKD 1069
>YOR304w [K] KOG0385 Chromatin remodeling complex WSTF-ISWI small subunit
Length = 1120
Score = 937 bits (2422), Expect = 0.0
Identities = 499/1024 (48%), Positives = 664/1024 (64%), Gaps = 56/1024 (5%)
Query: 18 PNSIAEKKERYLLPLRDLASGKRKFDEQGTVKRFEHLLGLSTLFRHFIERKAAKDPRFRE 77
P A++K++++L + D K+K D+ T KRF++LLG++ LFRHFI KA D ++
Sbjct: 60 PEYWAQRKKKFVLDV-DPKYAKQK-DKSDTYKRFKYLLGVTDLFRHFIGIKAKHDKNIQK 117
Query: 78 VLDTIDXXXXXXXXXXXXHTDARR--RKTXXXXXXXXXXXXXXXXXXXXDVDFQFRESPA 135
+L +D + + R RKT D ESP+
Sbjct: 118 LLKQLDSDANKLSKSHSTVSSSSRHHRKTEKEEDAELMADEEEEIVDTYQEDIFVSESPS 177
Query: 136 YV-NGQLRPYQIQGLNWLVALHKNQLAGILADEMGLGKTLQTIAFLGYLRYIEKKNGPFL 194
+V +G+LR YQ+QGLNWL++LH+N+L+GILADEMGLGKTLQTI+FLGYLRY+++ GPFL
Sbjct: 178 FVKSGKLRDYQVQGLNWLISLHENKLSGILADEMGLGKTLQTISFLGYLRYVKQIEGPFL 237
Query: 195 VIAPKSTLNNWLREINRWTPEVSAFILQGDKEERSKLCHDKLLACDFDICVASYEIIIRE 254
+I PKSTL+NW RE +WTP V+ +L GDK+ R+ + + +L FD+ + SYE++IRE
Sbjct: 238 IIVPKSTLDNWRREFLKWTPNVNVLVLHGDKDTRADIVRNIILEARFDVLITSYEMVIRE 297
Query: 255 KASFKKIDWEYVVIDEAHRIKNEESMLSQVLREFSSRNRLLITGTPLQNNLHELWALLNF 314
K + K++ W+Y+VIDEAHRIKNE+S LSQ++R F S+NRLLITGTPLQNNLHELWALLNF
Sbjct: 298 KNALKRLAWQYIVIDEAHRIKNEQSALSQIIRLFYSKNRLLITGTPLQNNLHELWALLNF 357
Query: 315 LLPDIFADSATXXXXXXXXXXXXXXXXVVKQLHTVLSPFLLRRIKNDVEGSLLPKKELNV 374
LLPDIF DS V++QLH+VL+PFLLRR+K DVE SLLPK E NV
Sbjct: 358 LLPDIFGDSELFDEWFEQNNSEQDQEIVIQQLHSVLNPFLLRRVKADVEKSLLPKIETNV 417
Query: 375 YVGMSSMQKKWYKQILEKDIDAVNGSNGQKESKTRLLNIVMQLRKCCNHPYLFDGAEPGP 434
YVGM+ MQ +WYK +LEKDIDAVNG+ G++E KTRLLNIVMQLRKCCNHPYLF+GAEPGP
Sbjct: 418 YVGMTDMQIQWYKSLLEKDIDAVNGAVGKREGKTRLLNIVMQLRKCCNHPYLFEGAEPGP 477
Query: 435 PYTTDEHLVYNSAXXXXXXXXXXXXXEQGSRVLIFSQMSRVLDILEDYCYFREYEYCRID 494
PYTTDEHL++NS E+GSRVLIFSQMSR+LDILEDYCYFR++EYCRID
Sbjct: 478 PYTTDEHLIFNSGKMIILDKLLKRLKEKGSRVLIFSQMSRLLDILEDYCYFRDFEYCRID 537
Query: 495 GSTAHEDRINAIDDYNAPDSKKFIFLLTTRAGGLGINLTTADIVVLYDSDWNPQADLQAM 554
GST+HE+RI AID+YN P+S+KF+FLLTTRAGGLGINL TAD V+L+DSDWNPQADLQAM
Sbjct: 538 GSTSHEERIEAIDEYNKPNSEKFVFLLTTRAGGLGINLVTADTVILFDSDWNPQADLQAM 597
Query: 555 DRAHRIGQKKQVRVFRFVTDNSVEEKILERATQKLKLDQLVIQQGRVTXXXXXXXXDSKE 614
DRAHRIGQKKQV V+RFVT+N++EEK++ERA QKL+LDQLVIQQG T +SK+
Sbjct: 598 DRAHRIGQKKQVHVYRFVTENAIEEKVIERAAQKLRLDQLVIQQG--TGKKTASLGNSKD 655
Query: 615 GLLSMIQHGAVDVFKSNDSSAMTSQTGTPHPXXXXXXXXXXXXXXXXXQSEDKTRSLNAK 674
LL MIQ GA ++F+ S + E KT+ LNAK
Sbjct: 656 DLLDMIQFGAKNMFEKKASKVTVD----------------ADIDDILKKGEQKTQELNAK 699
Query: 675 YATLGLDELQRFN---QDSAYEWDGQNFKKKVEKDIINPLFIPPTKRE-RSTNANYSVDN 730
Y +LGLD+LQ+FN SAYEW+G++F+KK ++ +I P++RE R YSVD+
Sbjct: 700 YQSLGLDDLQKFNGIENQSAYEWNGKSFQKKSNDKVVE--WINPSRRERRREQTTYSVDD 757
Query: 731 YYKDVLNPGRN--NQYTVPPKMPKLQPL---NSHQLLRPQLKAIYEKERMWIAKKNNYVP 785
YYK+++ G ++ T PK P+ + Q +L A+ EKE+++ KK NY
Sbjct: 758 YYKEIIGGGSKSASKQTPQPKAPRAPKVIHGQDFQFFPKELDALQEKEQLYFKKKVNYKV 817
Query: 786 NLDDV---VTTYGXXXXXXXXXXXXXXXX-----------------XSIANAEPLTEEET 825
D+ + G I +A T+E+
Sbjct: 818 TSYDITGDIRNEGSDAEEEEGEYKNAANTEGHKGHEELKRRIEEEQEKINSAPDFTQEDE 877
Query: 826 NNKIEWEKEGFHNWNKLDFRKFITASGKHGRNSIQAIAAEFGGSKTEEEVRAYAKAFWAN 885
K E + F NWNK DF FI A K+GR+ ++ I SKT EEV YAK FW
Sbjct: 878 LRKQELISKAFTNWNKRDFMAFINACAKYGRDDMENIKKSI-DSKTPEEVEVYAKIFWER 936
Query: 886 LERVEDYERYVKNIETEEERVRRVKMNQEALRRKISQCANPLFELKLKFPPSTNNKRTFS 945
L+ + +E+Y+ N+E E++ ++K + LR+KI QC +PL EL +++PP+ N +RT++
Sbjct: 937 LKEINGWEKYLHNVELGEKKNEKLKFQETLLRQKIEQCKHPLHELIIQYPPN-NARRTYN 995
Query: 946 EEEDRFILLMLFKYGLDRENVYEMIRDEIKHHPLFELDFFFQSRTPIELQRRTITLLQCL 1005
ED+F+LL + KYGL + +YE ++ EI LF D+F ++RT EL +R TLL +
Sbjct: 996 TLEDKFLLLAVNKYGLRADKLYEKLKQEIMMSDLFTFDWFIKTRTVHELSKRVHTLLTLI 1055
Query: 1006 EKEF 1009
+E+
Sbjct: 1056 VREY 1059
>Hs21071044 [K] KOG0385 Chromatin remodeling complex WSTF-ISWI small subunit
Length = 1054
Score = 815 bits (2104), Expect = 0.0
Identities = 455/980 (46%), Positives = 602/980 (61%), Gaps = 66/980 (6%)
Query: 49 KRFEHLLGLSTLFRHFIERKAAKDPRFREVLDT-IDXXXXXXXXXXXXHTDARRRKTXXX 107
KRFE LL + LF HFI+ A K P + D R R+T
Sbjct: 93 KRFEFLLKQTELFAHFIQPSAQKSPTSPLNMKLGRPRIKKDEKQSLISAGDYRHRRTEQE 152
Query: 108 XXXXXXXXXXXXXXXXXDVDFQFRESPAYVNG-QLRPYQIQGLNWLVALHKNQLAGILAD 166
+V +F SP+YV G LR YQI+GLNWL++L++N + GILAD
Sbjct: 153 EDEELLSESRKTS----NVCIRFEVSPSYVKGGPLRDYQIRGLNWLISLYENGVNGILAD 208
Query: 167 EMGLGKTLQTIAFLGYLRYIEKKNGPFLVIAPKSTLNNWLREINRWTPEVSAFILQGDKE 226
EMGLGKTLQTIA LGYL++ GP +V+ PKSTL+NW+ E RW P + GDK+
Sbjct: 209 EMGLGKTLQTIALLGYLKHYRNIPGPHMVLVPKSTLHNWMNEFKRWVPSLRVICFVGDKD 268
Query: 227 ERSKLCHDKLLACDFDICVASYEIIIREKASFKKIDWEYVVIDEAHRIKNEESMLSQVLR 286
R+ D+++ ++D+CV SYE++I+EK+ FKK W Y+VIDEAHRIKNE+S LS+++R
Sbjct: 269 ARAAFIRDEMMPGEWDVCVTSYEMVIKEKSVFKKFHWRYLVIDEAHRIKNEKSKLSEIVR 328
Query: 287 EFSSRNRLLITGTPLQNNLHELWALLNFLLPDIFADSATXXXXXXXXXXXXXXXXVVKQL 346
EF S NRLL+TGTPLQNNLHELWALLNFLLPD+F +SA +V++L
Sbjct: 329 EFKSTNRLLLTGTPLQNNLHELWALLNFLLPDVF-NSADDFDSWFDTKNCLGDQKLVERL 387
Query: 347 HTVLSPFLLRRIKNDVEGSLLPKKELNVYVGMSSMQKKWYKQILEKDIDAVNGSNGQKES 406
H VL PFLLRRIK DVE SL PKKE+ +Y+G+S MQ++WY +IL KDID +N S K
Sbjct: 388 HAVLKPFLLRRIKTDVEKSLPPKKEIKIYLGLSKMQREWYTKILMKDIDVLNSSG--KMD 445
Query: 407 KTRLLNIVMQLRKCCNHPYLFDGAEPGPPYTTDEHLVYNSAXXXXXXXXXXXXXEQGSRV 466
K RLLNI+MQLRKCCNHPYLFDGAEPGPPYTTDEH+V NS EQGSRV
Sbjct: 446 KMRLLNILMQLRKCCNHPYLFDGAEPGPPYTTDEHIVSNSGKMVVLDKLLAKLKEQGSRV 505
Query: 467 LIFSQMSRVLDILEDYCYFREYEYCRIDGSTAHEDRIN------------AIDDYNAPDS 514
LIFSQM+R+LDILEDYC +R YEYCR+DG T HE+R + AI+ +NAP+S
Sbjct: 506 LIFSQMTRLLDILEDYCMWRGYEYCRLDGQTPHEEREDKFLEVEFLGQREAIEAFNAPNS 565
Query: 515 KKFIFLLTTRAGGLGINLTTADIVVLYDSDWNPQADLQAMDRAHRIGQKKQVRVFRFVTD 574
KFIF+L+TRAGGLGINL +AD+V+LYDSDWNPQ DLQAMDRAHRIGQKK VRVFR +TD
Sbjct: 566 SKFIFMLSTRAGGLGINLASADVVILYDSDWNPQVDLQAMDRAHRIGQKKPVRVFRLITD 625
Query: 575 NSVEEKILERATQKLKLDQLVIQQGRVTXXXXXXXXDSKEGLLSMIQHGAVDVFKSNDSS 634
N+VEE+I+ERA KL+LD +VIQQGR+ +KE +L MI+HGA VF S +S
Sbjct: 626 NTVEERIVERAEIKLRLDSIVIQQGRLIDQQSNKL--AKEEMLQMIRHGATHVFASKESE 683
Query: 635 AMTSQTGTPHPXXXXXXXXXXXXXXXXXQSEDKTRSLNAKYATLGLDELQRFNQD---SA 691
T + E KT +N + +G L+ F D S
Sbjct: 684 LTDEDITT-----------------ILERGEKKTAEMNERLQKMGESSLRNFRMDIEQSL 726
Query: 692 YEWDGQNFKKKVEKDIINPLFIPPTKRERSTNANYSVDNYYKDVLNPGRNNQYTVP--PK 749
Y+++G+++++K + ++ +I P KRER ANY+VD Y+++ L R ++ +P P+
Sbjct: 727 YKFEGEDYREKQKLGMVE--WIEPPKRER--KANYAVDAYFREAL---RVSEPKIPKAPR 779
Query: 750 MPKLQPLNSHQLLRPQLKAIYEKERMWIAKKNNY-VPNLDDVVTTYGXXXXXXXXXXXXX 808
PK + Q P+L + EKE ++ K Y VP D+
Sbjct: 780 PPKQPNVQDFQFFPPRLFELLEKEILYYRKTIGYKVPRNPDIPNP----------ALAQR 829
Query: 809 XXXXSIANAEPLTEEETNNKIEWEKEGFHNWNKLDFRKFITASGKHGRNSIQAIAAEFGG 868
I AEPLT EET K + +GF NW K DF +FI A+ K+GR+ I IA E G
Sbjct: 830 EEQKKIDGAEPLTPEETEEKEKLLTQGFTNWTKRDFNQFIKANEKYGRDDIDNIAREVEG 889
Query: 869 SKTEEEVRAYAKAFWANLERVEDYERYVKNIETEEERVRRVKMNQEALRRKISQCANPLF 928
K+ EEV Y+ FW ++D E+ + IE E R++R ++AL KI++ P
Sbjct: 890 -KSPEEVMEYSAVFWERCNELQDIEKIMAQIERGEARIQRRISIKKALDAKIARYKAPFH 948
Query: 929 ELKLKFPPSTNNKRTFSEEEDRFILLMLFKYGLDRENVYEMIRDEIKHHPLFELDFFFQS 988
+L++++ T+ + ++EEEDRF++ ML K G DRENVYE +R +++ P F D+F +S
Sbjct: 949 QLRIQY--GTSKGKNYTEEEDRFLICMLHKMGFDRENVYEELRQCVRNAPQFRFDWFIKS 1006
Query: 989 RTPIELQRRTITLLQCLEKE 1008
RT +E QRR TL+ +EKE
Sbjct: 1007 RTAMEFQRRCNTLISLIEKE 1026
>Hs21071058 [K] KOG0385 Chromatin remodeling complex WSTF-ISWI small subunit
Length = 1052
Score = 806 bits (2082), Expect = 0.0
Identities = 449/967 (46%), Positives = 599/967 (61%), Gaps = 54/967 (5%)
Query: 50 RFEHLLGLSTLFRHFIERKAAKDPRFR-EVLDTIDXXXXXXXXXXXXHTDARRRKTXXXX 108
RFE+LL + LF HFI+ A K P ++ D R R+T
Sbjct: 91 RFEYLLKQTELFAHFIQPAAQKTPTSPLKMKPGRPRIKKDEKQNLLSVGDYRHRRTEQEE 150
Query: 109 XXXXXXXXXXXXXXXXDVDFQFRESPAYVN-GQLRPYQIQGLNWLVALHKNQLAGILADE 167
+V +F +SP+YV G+LR YQ++GLNWL++L++N + GILADE
Sbjct: 151 DEELLTESSKAT----NVCTRFEDSPSYVKWGKLRDYQVRGLNWLISLYENGINGILADE 206
Query: 168 MGLGKTLQTIAFLGYLRYIEKKNGPFLVIAPKSTLNNWLREINRWTPEVSAFILQGDKEE 227
MGLGKTLQTI+ LGY+++ GP +V+ PKSTL+NW+ E RW P + + L GDKE+
Sbjct: 207 MGLGKTLQTISLLGYMKHYRNIPGPHMVLVPKSTLHNWMSEFKRWVPTLRSVCLIGDKEQ 266
Query: 228 RSKLCHDKLLACDFDICVASYEIIIREKASFKKIDWEYVVIDEAHRIKNEESMLSQVLRE 287
R+ D LL ++D+CV SYE++I+EK+ FKK +W Y+VIDEAHRIKNE+S LS+++RE
Sbjct: 267 RAAFVRDVLLPGEWDVCVTSYEMLIKEKSVFKKFNWRYLVIDEAHRIKNEKSKLSEIVRE 326
Query: 288 FSSRNRLLITGTPLQNNLHELWALLNFLLPDIFADSATXXXXXXXXXXXXXXXXVVKQLH 347
F + NRLL+TGTPLQNNLHELW+LLNFLLPD+F +SA +V++LH
Sbjct: 327 FKTTNRLLLTGTPLQNNLHELWSLLNFLLPDVF-NSADDFDSWFDTNNCLGDQKLVERLH 385
Query: 348 TVLSPFLLRRIKNDVEGSLLPKKELNVYVGMSSMQKKWYKQILEKDIDAVNGSNGQKESK 407
VL PFLLRRIK DVE SL PKKE+ +YVG+S MQ++WY +IL KDID +N + K K
Sbjct: 386 MVLRPFLLRRIKADVEKSLPPKKEVKIYVGLSKMQREWYTRILMKDIDILNSAG--KMDK 443
Query: 408 TRLLNIVMQLRKCCNHPYLFDGAEPGPPYTTDEHLVYNSAXXXXXXXXXXXXXEQGSRVL 467
RLLNI+MQLRKCCNHPYLFDGAEPGPPYTTD HLV NS EQGSRVL
Sbjct: 444 MRLLNILMQLRKCCNHPYLFDGAEPGPPYTTDMHLVTNSGKMVVLDKLLPKLKEQGSRVL 503
Query: 468 IFSQMSRVLDILEDYCYFREYEYCRIDGSTAHEDRINAIDDYNAPDSKKFIFLLTTRAGG 527
IFSQM+RVLDILEDYC +R YEYCR+DG T H++R ++I+ YN P+S KF+F+L+TRAGG
Sbjct: 504 IFSQMTRVLDILEDYCMWRNYEYCRLDGQTPHDERQDSINAYNEPNSTKFVFMLSTRAGG 563
Query: 528 LGINLTTADIVVLYDSDWNPQADLQAMDRAHRIGQKKQVRVFRFVTDNSVEEKILERATQ 587
LGINL TAD+V+LYDSDWNPQ DLQAMDRAHRIGQ K VRVFRF+TDN+VEE+I+ERA
Sbjct: 564 LGINLATADVVILYDSDWNPQVDLQAMDRAHRIGQTKTVRVFRFITDNTVEERIVERAEM 623
Query: 588 KLKLDQLVIQQGRVTXXXXXXXXDSKEGLLSMIQHGAVDVFKSNDSSAMTSQTGTPHPXX 647
KL+LD +VIQQGR+ K+ +L MI+HGA VF S +S
Sbjct: 624 KLRLDSIVIQQGRLVDQNLNKI--GKDEMLQMIRHGATHVFASKESEITDED-------- 673
Query: 648 XXXXXXXXXXXXXXXQSEDKTRSLNAKYATLGLDELQRFNQD---SAYEWDGQNFKKKVE 704
+ KT +N K + +G L+ F D S Y ++G+++++K
Sbjct: 674 ---------IDGILERGAKKTAEMNEKLSKMGESSLRNFTMDTESSVYNFEGEDYREK-- 722
Query: 705 KDIINPLFIPPTKRERSTNANYSVDNYYKDVLNPGRNNQYTVP--PKMPKLQPLNSHQLL 762
+ I +I P KRER ANY+VD Y+++ L R ++ P P+ PK + Q
Sbjct: 723 QKIAFTEWIEPPKRER--KANYAVDAYFREAL---RVSEPKAPKAPRPPKQPNVQDFQFF 777
Query: 763 RPQLKAIYEKERMWIAKKNNY-VPNLDDVVTTYGXXXXXXXXXXXXXXXXXSIANAEPLT 821
P+L + EKE ++ K Y VP ++ I AE L
Sbjct: 778 PPRLFELLEKEILFYRKTIGYKVPRNPELPN----------AAQAQKEEQLKIDEAESLN 827
Query: 822 EEETNNKIEWEKEGFHNWNKLDFRKFITASGKHGRNSIQAIAAEFGGSKTEEEVRAYAKA 881
+EE K + +GF NWNK DF +FI A+ K GR+ I+ IA E G KT EEV Y+
Sbjct: 828 DEELEEKEKLLTQGFTNWNKRDFNQFIKANEKWGRDDIENIAREVEG-KTPEEVIEYSAV 886
Query: 882 FWANLERVEDYERYVKNIETEEERVRRVKMNQEALRRKISQCANPLFELKLKFPPSTNNK 941
FW ++D E+ + IE E R++R ++AL KI + P +L++ + TN
Sbjct: 887 FWERCNELQDIEKIMAQIERGEARIQRRISIKKALDTKIGRYKAPFHQLRISY--GTNKG 944
Query: 942 RTFSEEEDRFILLMLFKYGLDRENVYEMIRDEIKHHPLFELDFFFQSRTPIELQRRTITL 1001
+ ++EEEDRF++ ML K G D+ENVY+ +R I++ P F D+F +SRT +ELQRR TL
Sbjct: 945 KNYTEEEDRFLICMLHKLGFDKENVYDELRQCIRNSPQFRFDWFLKSRTAMELQRRCNTL 1004
Query: 1002 LQCLEKE 1008
+ +E+E
Sbjct: 1005 ITLIERE 1011
>CE00789 [K] KOG0385 Chromatin remodeling complex WSTF-ISWI small subunit
Length = 971
Score = 796 bits (2057), Expect = 0.0
Identities = 418/891 (46%), Positives = 574/891 (63%), Gaps = 43/891 (4%)
Query: 130 FRESPAYV-NGQLRPYQIQGLNWLVALHKNQLAGILADEMGLGKTLQTIAFLGYLRYIEK 188
F +SP Y+ NG++R YQ++GLNWL +L N++ GILADEMGLGKTLQTI+ +GY+++ +
Sbjct: 82 FDKSPFYIENGEMRDYQVRGLNWLASLQHNKINGILADEMGLGKTLQTISMIGYMKHYKN 141
Query: 189 KNGPFLVIAPKSTLNNWLREINRWTPEVSAFILQGDKEERSKLCHDKLLACDFDICVASY 248
K P LVI PKSTL NW E +W P ++A +L GD+ R+++ D +L FD+C +Y
Sbjct: 142 KASPHLVIVPKSTLQNWANEFKKWCPSINAVVLIGDEAARNQVLRDVILPQKFDVCCTTY 201
Query: 249 EIIIREKASFKKIDWEYVVIDEAHRIKNEESMLSQVLREFSSRNRLLITGTPLQNNLHEL 308
E++++ K KK++W Y++IDEAHRIKNE+S LS+ +RE +S NRLLITGTPLQNNLHEL
Sbjct: 202 EMMLKVKTQLKKLNWRYIIIDEAHRIKNEKSKLSETVRELNSENRLLITGTPLQNNLHEL 261
Query: 309 WALLNFLLPDIFADSATXXXXXXXXXXXXXXXXVVKQLHTVLSPFLLRRIKNDVEGSLLP 368
WALLNFLLPDIF S+ +V++LH VL PFLLRRIK+DVE SLLP
Sbjct: 262 WALLNFLLPDIFT-SSDDFDSWFSNDAMSGNTDLVQRLHKVLQPFLLRRIKSDVEKSLLP 320
Query: 369 KKELNVYVGMSSMQKKWYKQILEKDIDAVNGSNGQKESKTRLLNIVMQLRKCCNHPYLFD 428
KKE+ VYVG+S MQ++WY ++L KDID +NG+ K K RL+NI+M LRKC NHPYLFD
Sbjct: 321 KKEVKVYVGLSKMQREWYTKVLMKDIDIINGAG--KVEKARLMNILMHLRKCVNHPYLFD 378
Query: 429 GAEPGPPYTTDEHLVYNSAXXXXXXXXXXXXXEQGSRVLIFSQMSRVLDILEDYCYFREY 488
GAEPGPP+TTD+HLV NS EQGSRVLIFSQ SR+LD+LED+C++R Y
Sbjct: 379 GAEPGPPFTTDQHLVDNSGKMVVLDKLLMKFKEQGSRVLIFSQFSRMLDLLEDFCWWRHY 438
Query: 489 EYCRIDGSTAHEDRINAIDDYNAPDSKKFIFLLTTRAGGLGINLTTADIVVLYDSDWNPQ 548
EYCR+DGST HEDR NAI+ YNAPDSKKFIF+LTTRAGGLGINL TAD+V++YDSDWNPQ
Sbjct: 439 EYCRLDGSTPHEDRSNAIEAYNAPDSKKFIFMLTTRAGGLGINLATADVVIIYDSDWNPQ 498
Query: 549 ADLQAMDRAHRIGQKKQVRVFRFVTDNSVEEKILERATQKLKLDQLVIQQGRVTXXXXXX 608
+DLQAMDRAHRIGQKKQVRVFR +T+N+V+E+I+E+A KL+LD +VIQQGR++
Sbjct: 499 SDLQAMDRAHRIGQKKQVRVFRLITENTVDERIIEKAEAKLRLDNIVIQQGRMSEAQKTL 558
Query: 609 XXDSKEGLLSMIQHGAVDVFKSNDSSAMTSQTGTPHPXXXXXXXXXXXXXXXXXQSEDKT 668
K ++SMI+HGA VF + DS+ T ++E KT
Sbjct: 559 ---GKGDMISMIRHGAEQVFAAKDSTISDDDIDT-----------------ILEKAEVKT 598
Query: 669 RSLNAKYATLGLDELQRFN-QDSA----YEWDGQNFKKKVEKDIINPLFIPPTKRERSTN 723
LN K + + L+ +D+A Y+++G+N+K K + D + +I P KRER
Sbjct: 599 AELNEKMGKIDENNLRNMTFEDNAKFTVYQFEGENYKAK-QADGMGHFWIEPPKRER--K 655
Query: 724 ANYSVDNYYKDVLNPGRNNQYTVPPKMPKLQPLNSHQLLRPQLKAIYEKERMWIAKKNNY 783
ANY VD YYK+ + G + PKL + Q +L + +KE K Y
Sbjct: 656 ANYQVDLYYKEAMRAGNPTEKQSKAPRPKLPQVFDFQFYPRRLFELLDKEIYHYRKTIGY 715
Query: 784 VPNLDDVVTTYGXXXXXXXXXXXXXXXXXSIANAEPLTEEETNNKIEWEKEGFHNWNKLD 843
V V I NA PLT++E K E + +W K +
Sbjct: 716 VAERPKDVPP-------KEAEKRQAEEQKLINNARPLTDKEQEEKAELLTQSVTDWTKRE 768
Query: 844 FRKFITASGKHGRNSIQAIAAEFGGSKTEEEVRAYAKAFWANLERVEDYERYVKNIETEE 903
F++F+ + K+GR +++IA E + EE+++YAK FW +E ++D E+ + IE E
Sbjct: 769 FQQFVRGNEKYGREDLESIAKEM--ERPLEEIQSYAKVFWERIEELQDSEKVLSQIEKGE 826
Query: 904 ERVRRVKMNQEALRRKISQCANPLFELKLKFPPSTNNKRTFSEEEDRFILLMLFKYGLDR 963
R++R ++AL KI++ P +L++ + TN +T++EEEDRF++ + G D+
Sbjct: 827 ARIQRKYAVKKALDAKIAKYKAPFQQLRISY--GTNKGKTYTEEEDRFLVCETHRLGHDK 884
Query: 964 ENVYEMIRDEIKHHPLFELDFFFQSRTPIELQRRTITLLQCLEKEFNTGIQ 1014
ENV+E +R ++ P F D+F +SRT +ELQRR TL+ +E+E ++
Sbjct: 885 ENVFEELRQSVRMAPQFRFDWFLKSRTAMELQRRCNTLITLIEREMGEVVE 935
>Hs21071046 [K] KOG0385 Chromatin remodeling complex WSTF-ISWI small subunit
Length = 1033
Score = 774 bits (1999), Expect = 0.0
Identities = 440/980 (44%), Positives = 586/980 (58%), Gaps = 87/980 (8%)
Query: 49 KRFEHLLGLSTLFRHFIERKAAKDPRFREVLDT-IDXXXXXXXXXXXXHTDARRRKTXXX 107
KRFE LL + LF HFI+ A K P + D R R+T
Sbjct: 93 KRFEFLLKQTELFAHFIQPSAQKSPTSPLNMKLGRPRIKKDEKQSLISAGDYRHRRTEQE 152
Query: 108 XXXXXXXXXXXXXXXXXDVDFQFRESPAYVNG-QLRPYQIQGLNWLVALHKNQLAGILAD 166
+V +F SP+YV G LR YQI+GLNWL++L++N + GILAD
Sbjct: 153 EDEELLSESRKTS----NVCIRFEVSPSYVKGGPLRDYQIRGLNWLISLYENGVNGILAD 208
Query: 167 EMGLGKTLQTIAFLGYLRYIEKKNGPFLVIAPKSTLNNWLREINRWTPEVSAFILQGDKE 226
E+ GP +V+ PKSTL+NW+ E RW P + GDK+
Sbjct: 209 EIP---------------------GPHMVLVPKSTLHNWMNEFKRWVPSLRVICFVGDKD 247
Query: 227 ERSKLCHDKLLACDFDICVASYEIIIREKASFKKIDWEYVVIDEAHRIKNEESMLSQVLR 286
R+ D+++ ++D+CV SYE++I+EK+ FKK W Y+VIDEAHRIKNE+S LS+++R
Sbjct: 248 ARAAFIRDEMMPGEWDVCVTSYEMVIKEKSVFKKFHWRYLVIDEAHRIKNEKSKLSEIVR 307
Query: 287 EFSSRNRLLITGTPLQNNLHELWALLNFLLPDIFADSATXXXXXXXXXXXXXXXXVVKQL 346
EF S NRLL+TGTPLQNNLHELWALLNFLLPD+F +SA +V++L
Sbjct: 308 EFKSTNRLLLTGTPLQNNLHELWALLNFLLPDVF-NSADDFDSWFDTKNCLGDQKLVERL 366
Query: 347 HTVLSPFLLRRIKNDVEGSLLPKKELNVYVGMSSMQKKWYKQILEKDIDAVNGSNGQKES 406
H VL PFLLRRIK DVE SL PKKE+ +Y+G+S MQ++WY +IL KDID +N S K
Sbjct: 367 HAVLKPFLLRRIKTDVEKSLPPKKEIKIYLGLSKMQREWYTKILMKDIDVLNSSG--KMD 424
Query: 407 KTRLLNIVMQLRKCCNHPYLFDGAEPGPPYTTDEHLVYNSAXXXXXXXXXXXXXEQGSRV 466
K RLLNI+MQLRKCCNHPYLFDGAEPGPPYTTDEH+V NS EQGSRV
Sbjct: 425 KMRLLNILMQLRKCCNHPYLFDGAEPGPPYTTDEHIVSNSGKMVVLDKLLAKLKEQGSRV 484
Query: 467 LIFSQMSRVLDILEDYCYFREYEYCRIDGSTAHEDRIN------------AIDDYNAPDS 514
LIFSQM+R+LDILEDYC +R YEYCR+DG T HE+R + AI+ +NAP+S
Sbjct: 485 LIFSQMTRLLDILEDYCMWRGYEYCRLDGQTPHEEREDKFLEVEFLGQREAIEAFNAPNS 544
Query: 515 KKFIFLLTTRAGGLGINLTTADIVVLYDSDWNPQADLQAMDRAHRIGQKKQVRVFRFVTD 574
KFIF+L+TRAGGLGINL +AD+V+LYDSDWNPQ DLQAMDRAHRIGQKK VRVFR +TD
Sbjct: 545 SKFIFMLSTRAGGLGINLASADVVILYDSDWNPQVDLQAMDRAHRIGQKKPVRVFRLITD 604
Query: 575 NSVEEKILERATQKLKLDQLVIQQGRVTXXXXXXXXDSKEGLLSMIQHGAVDVFKSNDSS 634
N+VEE+I+ERA KL+LD +VIQQGR+ +KE +L MI+HGA VF S +S
Sbjct: 605 NTVEERIVERAEIKLRLDSIVIQQGRLIDQQSNKL--AKEEMLQMIRHGATHVFASKESE 662
Query: 635 AMTSQTGTPHPXXXXXXXXXXXXXXXXXQSEDKTRSLNAKYATLGLDELQRFNQD---SA 691
T + E KT +N + +G L+ F D S
Sbjct: 663 LTDEDITT-----------------ILERGEKKTAEMNERLQKMGESSLRNFRMDIEQSL 705
Query: 692 YEWDGQNFKKKVEKDIINPLFIPPTKRERSTNANYSVDNYYKDVLNPGRNNQYTVP--PK 749
Y+++G+++++K + ++ +I P KRER ANY+VD Y+++ L R ++ +P P+
Sbjct: 706 YKFEGEDYREKQKLGMVE--WIEPPKRER--KANYAVDAYFREAL---RVSEPKIPKAPR 758
Query: 750 MPKLQPLNSHQLLRPQLKAIYEKERMWIAKKNNY-VPNLDDVVTTYGXXXXXXXXXXXXX 808
PK + Q P+L + EKE ++ K Y VP D+
Sbjct: 759 PPKQPNVQDFQFFPPRLFELLEKEILYYRKTIGYKVPRNPDIPNP----------ALAQR 808
Query: 809 XXXXSIANAEPLTEEETNNKIEWEKEGFHNWNKLDFRKFITASGKHGRNSIQAIAAEFGG 868
I AEPLT EET K + +GF NW K DF +FI A+ K+GR+ I IA E G
Sbjct: 809 EEQKKIDGAEPLTPEETEEKEKLLTQGFTNWTKRDFNQFIKANEKYGRDDIDNIAREVEG 868
Query: 869 SKTEEEVRAYAKAFWANLERVEDYERYVKNIETEEERVRRVKMNQEALRRKISQCANPLF 928
K+ EEV Y+ FW ++D E+ + IE E R++R ++AL KI++ P
Sbjct: 869 -KSPEEVMEYSAVFWERCNELQDIEKIMAQIERGEARIQRRISIKKALDAKIARYKAPFH 927
Query: 929 ELKLKFPPSTNNKRTFSEEEDRFILLMLFKYGLDRENVYEMIRDEIKHHPLFELDFFFQS 988
+L++++ T+ + ++EEEDRF++ ML K G DRENVYE +R +++ P F D+F +S
Sbjct: 928 QLRIQY--GTSKGKNYTEEEDRFLICMLHKMGFDRENVYEELRQCVRNAPQFRFDWFIKS 985
Query: 989 RTPIELQRRTITLLQCLEKE 1008
RT +E QRR TL+ +EKE
Sbjct: 986 RTAMEFQRRCNTLISLIEKE 1005
>7303422 [K] KOG0385 Chromatin remodeling complex WSTF-ISWI small subunit
Length = 1027
Score = 774 bits (1998), Expect = 0.0
Identities = 436/977 (44%), Positives = 594/977 (60%), Gaps = 72/977 (7%)
Query: 49 KRFEHLLGLSTLFRHFIERKAAKDP-----RFREVLDTIDXXXXXXXXXXXXHTDARRRK 103
+RF+ LL + +F HF+ +AK P R +++ D D R RK
Sbjct: 45 RRFDFLLKQTEIFTHFMTN-SAKSPTKPKGRPKKIKDKDKEKDVA---------DHRHRK 94
Query: 104 TXXXXXXXXXXXXXXXXXXXXDVDFQFRESPAYV-NGQLRPYQIQGLNWLVALHKNQLAG 162
T F+F SPAY+ +G++R YQI+GLNW+++L++N + G
Sbjct: 95 TEQEEDEELLAEDSATKEI-----FRFDASPAYIKSGEMRDYQIRGLNWMISLYENGING 149
Query: 163 ILADEMGLGKTLQTIAFLGYLRYIEKKNGPFLVIAPKSTLNNWLREINRWTPEVSAFILQ 222
ILADEMGLGKTLQTI+ LGYL++ + + GP +VI PKSTL NW+ E +W P + A L
Sbjct: 150 ILADEMGLGKTLQTISLLGYLKHFKNQAGPHIVIVPKSTLQNWVNEFKKWCPSLRAVCLI 209
Query: 223 GDKEERSKLCHDKLLACDFDICVASYEIIIREKASFKKIDWEYVVIDEAHRIKNEESMLS 282
GD++ R+ D L+ ++D+CV SYE+ IREK+ FKK +W Y+VIDEAHRIKNE+S LS
Sbjct: 210 GDQDTRNTFIRDVLMPGEWDVCVTSYEMCIREKSVFKKFNWRYLVIDEAHRIKNEKSKLS 269
Query: 283 QVLREFSSRNRLLITGTPLQNNLHELWALLNFLLPDIFADSATXXXXXXXXXXXXXXXXV 342
++LREF + NRLLITGTPLQNNLHELWALLNFLLPD+F +S+ +
Sbjct: 270 EILREFKTANRLLITGTPLQNNLHELWALLNFLLPDVF-NSSEDFDEWFNTNTCLGDDAL 328
Query: 343 VKQLHTVLSPFLLRRIKNDVEGSLLPKKELNVYVGMSSMQKKWYKQILEKDIDAVNGSNG 402
+ +LH VL PFLLRR+K +VE L PKKE+ ++VG+S MQ+ WY ++L KDID VNG+
Sbjct: 329 ITRLHAVLKPFLLRRLKAEVEKRLKPKKEMKIFVGLSKMQRDWYTKVLLKDIDVVNGAG- 387
Query: 403 QKESKTRLLNIVMQLRKCCNHPYLFDGAEPGPPYTTDEHLVYNSAXXXXXXXXXXXXXEQ 462
K K RL NI+MQLRKC NHPYLFDGAEPGPPYTTD HLVYNS EQ
Sbjct: 388 -KVEKMRLQNILMQLRKCTNHPYLFDGAEPGPPYTTDTHLVYNSGKMAILDKLLPKLQEQ 446
Query: 463 GSRVLIFSQMSRVLDILEDYCYFREYEYCRIDGSTAHEDRINAIDDYNAPDSKKFIFLLT 522
GSRVLIFSQM+R+LDILEDYC++R Y YCR+DG T HEDR I ++N +S KF+F+L+
Sbjct: 447 GSRVLIFSQMTRMLDILEDYCHWRNYNYCRLDGQTPHEDRNRQIQEFNMDNSAKFLFMLS 506
Query: 523 TRAGGLGINLTTADIVVLYDSDWNPQADLQAMDRAHRIGQKKQVRVFRFVTDNSVEEKIL 582
TRAGGLGINL TAD+V++YDSDWNPQ DLQAMDRAHRIGQKKQVRVFR +T+++VEEKI+
Sbjct: 507 TRAGGLGINLATADVVIIYDSDWNPQMDLQAMDRAHRIGQKKQVRVFRLITESTVEEKIV 566
Query: 583 ERATQKLKLDQLVIQQGRVTXXXXXXXXDSKEGLLSMIQHGAVDVFKSNDSSAMTSQTGT 642
ERA KL+LD++VIQ GR+ +K+ +L++I+ GA VF S ++
Sbjct: 567 ERAEVKLRLDKMVIQGGRLVDNRSNQL--NKDEMLNIIRFGANQVFSSKETDITDEDIDV 624
Query: 643 PHPXXXXXXXXXXXXXXXXXQSEDKTRSLNAKYATLGLDELQRFNQD--------SAYEW 694
+ E KT A +LG L+ F D S Y++
Sbjct: 625 -----------------ILERGEAKTAEQKAALDSLGESSLRTFTMDTNGEAGTSSVYQF 667
Query: 695 DGQNFKKKVEKDIINPLFIPPTKRERSTNANYSVDNYYKDVLNPGRNNQYTVP--PKMPK 752
+G+++++K + + + +I P KRER ANY+VD Y+++ L R ++ P P+ PK
Sbjct: 668 EGEDWREKQKLNALGN-WIEPPKRER--KANYAVDAYFREAL---RVSEPKAPKAPRPPK 721
Query: 753 LQPLNSHQLLRPQLKAIYEKERMWIAKKNNY-VPNLDDVVTTYGXXXXXXXXXXXXXXXX 811
+ Q P+L + ++E + K Y VP ++
Sbjct: 722 QPIVQDFQFFPPRLFELLDQEIYYFRKTVGYKVPKNTEL---------GSDATKVQREEQ 772
Query: 812 XSIANAEPLTEEETNNKIEWEKEGFHNWNKLDFRKFITASGKHGRNSIQAIAAEFGGSKT 871
I AEPLTEEE K +GF W K DF +FI A+ K+GR+ I IA + G KT
Sbjct: 773 RKIDEAEPLTEEEIQEKENLLSQGFTAWTKRDFNQFIKANEKYGRDDIDNIAKDVEG-KT 831
Query: 872 EEEVRAYAKAFWANLERVEDYERYVKNIETEEERVRRVKMNQEALRRKISQCANPLFELK 931
EEV Y FW ++D ER + IE E +++R ++AL +K+S+ P +L+
Sbjct: 832 PEEVIEYNAVFWERCTELQDIERIMGQIERGEGKIQRRLSIKKALDQKMSRYRAPFHQLR 891
Query: 932 LKFPPSTNNKRTFSEEEDRFILLMLFKYGLDRENVYEMIRDEIKHHPLFELDFFFQSRTP 991
L++ N + ++E EDRF++ ML K G D+ENVYE +R I+ P F D+F +SRT
Sbjct: 892 LQY--GNNKGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTA 949
Query: 992 IELQRRTITLLQCLEKE 1008
+ELQRR TL+ +E+E
Sbjct: 950 LELQRRCNTLITLIERE 966
>At3g06400 [K] KOG0385 Chromatin remodeling complex WSTF-ISWI small subunit
Length = 1057
Score = 719 bits (1855), Expect = 0.0
Identities = 407/883 (46%), Positives = 546/883 (61%), Gaps = 63/883 (7%)
Query: 134 PAYVNGQLRPYQIQGLNWLVALHKNQLAGILADEMGLGKTLQTIAFLGYLRYIEKKNGPF 193
P+ + G++R YQ+ GLNWL+ L++N + GILADEMGLGKTLQTI+ L YL NGP
Sbjct: 182 PSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLAYLHEYRGINGPH 241
Query: 194 LVIAPKSTLNNWLREINRWTPEVSAFILQGDKEERSKLCHDKLLACDFDICVASYEIIIR 253
+V+APKSTL NW+ EI R+ P + A G+ EER + D L+A FDICV S+E+ I+
Sbjct: 242 MVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIREDLLVAGKFDICVTSFEMAIK 301
Query: 254 EKASFKKIDWEYVVIDEAHRIKNEESMLSQVLREFSSRNRLLITGTPLQNNLHELWALLN 313
EK + ++ W Y++IDEAHRIKNE S+LS+ +R FS+ RLLITGTPLQNNLHELWALLN
Sbjct: 302 EKTALRRFSWRYIIIDEAHRIKNENSLLSKTMRLFSTNYRLLITGTPLQNNLHELWALLN 361
Query: 314 FLLPDIFADSATXXXXXXXXXXXXXXXXVVKQLHTVLSPFLLRRIKNDVEGSLLPKKELN 373
FLLP+IF+ SA VV+QLH VL PFLLRR+K+DVE L PKKE
Sbjct: 362 FLLPEIFS-SAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVEKGLPPKKETI 420
Query: 374 VYVGMSSMQKKWYKQILEKDIDAVNGSNGQKESKTRLLNIVMQLRKCCNHPYLFDGAEPG 433
+ VGMS MQK++YK +L+KD++AVN +K RLLNI MQLRKCCNHPYLF GAEPG
Sbjct: 421 LKVGMSQMQKQYYKALLQKDLEAVNAGGERK----RLLNIAMQLRKCCNHPYLFQGAEPG 476
Query: 434 PPYTTDEHLVYNSAXXXXXXXXXXXXXEQGSRVLIFSQMSRVLDILEDYCYFREYEYCRI 493
PPYTT +HL+ N+ E+ SRVLIFSQM+R+LDILEDY +R Y YCRI
Sbjct: 477 PPYTTGDHLITNAGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMYRGYLYCRI 536
Query: 494 DGSTAHEDRINAIDDYNAPDSKKFIFLLTTRAGGLGINLTTADIVVLYDSDWNPQADLQA 553
DG+T ++R +I+ YN P S+KF+FLL+TRAGGLGINL TAD+V+LYDSDWNPQ DLQA
Sbjct: 537 DGNTGGDERDASIEAYNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQVDLQA 596
Query: 554 MDRAHRIGQKKQVRVFRFVTDNSVEEKILERATQKLKLDQLVIQQGRVTXXXXXXXXDSK 613
DRAHRIGQKK+V+VFRF T++++EEK++ERA +KL LD LVIQQGR+ +K
Sbjct: 597 QDRAHRIGQKKEVQVFRFCTESAIEEKVIERAYKKLALDALVIQQGRLAEQKSKSV--NK 654
Query: 614 EGLLSMIQHGAVDVFKSNDSSAMTSQTGTPHPXXXXXXXXXXXXXXXXXQSEDKTRSLNA 673
+ LL M+++GA VF S DS+ + E+ T L+A
Sbjct: 655 DELLQMVRYGAEMVFSSKDSTITDED-----------------IDRIIAKGEEATAELDA 697
Query: 674 KYATLGLDELQRFNQDSA--YEWDGQN-FKKKVE-KDIINPLFIPPTKRERSTNANYSVD 729
K D +Q DSA Y++D N + K++ K I++ + P KRER NYS
Sbjct: 698 KMKKFTEDAIQFKMDDSADFYDFDDDNKDENKLDFKKIVSDNWNDPPKRER--KRNYSES 755
Query: 730 NYYKDVLNPGRNNQYTVP--PKMPKLQPLNSHQLLRPQLKAIYEKERMWIAK--KNNYVP 785
Y+K L G + P P+MP+L + R L +YEKE ++ + + N +
Sbjct: 756 EYFKQTLRQGAPAKPKEPRIPRMPQLHDFQFFNIQR--LTELYEKEVRYLMQTHQKNQLK 813
Query: 786 NLDDVVTTYGXXXXXXXXXXXXXXXXXSIANAEPLTEEETNNKIEWEKEGFHNWNKLDFR 845
+ DV G +PLT EE K +EGF W++ DF
Sbjct: 814 DTIDVEEPEG---------------------GDPLTTEEVEEKEGLLEEGFSTWSRRDFN 852
Query: 846 KFITASGKHGRNSIQAIAAEFGGSKTEEEVRAYAKAFWANLERVEDYERYVKNIETEEER 905
F+ A K+GRN I++IA+E G KTEEEV YAK F + + DY+R +KNIE E R
Sbjct: 853 TFLRACEKYGRNDIKSIASEMEG-KTEEEVERYAKVFKERYKELNDYDRIIKNIERGEAR 911
Query: 906 VRRVKMNQEALRRKISQCANPLFELKLKFPPSTNNKRTFSEEEDRFILLMLFKYGLDREN 965
+ R +A+ +K+ + NP ELK+++ N + ++EE DRF++ M+ K G
Sbjct: 912 ISRKDEIMKAIGKKLDRYRNPWLELKIQY--GQNKGKLYNEECDRFMICMIHKLGYGN-- 967
Query: 966 VYEMIRDEIKHHPLFELDFFFQSRTPIELQRRTITLLQCLEKE 1008
++ ++ + +F D+F +SRT EL RR TL++ +EKE
Sbjct: 968 -WDELKAAFRTSSVFRFDWFVKSRTSQELARRCDTLIRLIEKE 1009
>At5g18620 [K] KOG0385 Chromatin remodeling complex WSTF-ISWI small subunit
Length = 1063
Score = 705 bits (1820), Expect = 0.0
Identities = 404/885 (45%), Positives = 541/885 (60%), Gaps = 64/885 (7%)
Query: 134 PAYVNGQLRPYQIQGLNWLVALHKNQLAGILADEMGLGKTLQTIAFLGYLRYIEKKNGPF 193
PA + G+LR YQ+ GLNWL+ L++N + GILADEMGLGKTLQTI+ L YL NGP
Sbjct: 174 PACIQGKLRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLAYLHEYRGINGPH 233
Query: 194 LVIAPKSTLNNWLREINRWTPEVSAFILQGDKEERSKLCHDKLLACDFDICVASYEIIIR 253
+V+APKSTL NW+ EI R+ P + A G+ EER + + L+A FDICV S+E+ I+
Sbjct: 234 MVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIREELLVAGKFDICVTSFEMAIK 293
Query: 254 EKASFKKIDWEYVVIDEAHRIKNEESMLSQVLREFSSRNRLLITGTPLQNNLHELWALLN 313
EK + ++ W Y++IDEAHRIKNE S+LS+ +R FS+ RLLITGTPLQNNLHELWALLN
Sbjct: 294 EKTTLRRFSWRYIIIDEAHRIKNENSLLSKTMRLFSTNYRLLITGTPLQNNLHELWALLN 353
Query: 314 FLLPDIFADSATXXXXXXXXXXXXXXXXVVKQLHTVLSPFLLRRIKNDVEGSLLPKKELN 373
FLLP++F+ SA VV+QLH VL PFLLRR+K+DVE L PKKE
Sbjct: 354 FLLPEVFS-SAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVEKGLPPKKETI 412
Query: 374 VYVGMSSMQKKWYKQILEKDIDAVNGSNGQKESKTRLLNIVMQLRKCCNHPYLFDGAEPG 433
+ VGMS MQK++YK +L+KD++ VNG +K RLLNI MQLRKCCNHPYLF GAEPG
Sbjct: 413 LKVGMSQMQKQYYKALLQKDLEVVNGGGERK----RLLNIAMQLRKCCNHPYLFQGAEPG 468
Query: 434 PPYTTDEHLVYNSAXXXXXXXXXXXXXEQGSRVLIFSQMSRVLDILEDYCYFREYEYCRI 493
PPYTT +HLV N+ ++ SRVLIFSQM+R+LDILEDY +R Y+YCRI
Sbjct: 469 PPYTTGDHLVTNAGKMVLLDKLLPKLKDRDSRVLIFSQMTRLLDILEDYLMYRGYQYCRI 528
Query: 494 DGSTAHEDRINAIDDYNAPDSKKFIFLLTTRAGGLGINLTTADIVVLYDSDWNPQADLQA 553
DG+T ++R +I+ YN P S+KF+FLL+TRAGGLGINL TAD+V+LYDSDWNPQ DLQA
Sbjct: 529 DGNTGGDERDASIEAYNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQVDLQA 588
Query: 554 MDRAHRIGQKKQVRVFRFVTDNSVEEKILERATQKLKLDQLVIQQGRVTXXXXXXXXDSK 613
DRAHRIGQKK+V+VFRF T+N++E K++ERA +KL LD LVIQQGR+ +K
Sbjct: 589 QDRAHRIGQKKEVQVFRFCTENAIEAKVIERAYKKLALDALVIQQGRLAEQKTV----NK 644
Query: 614 EGLLSMIQHGAVDVFKSNDSSAMTSQTGTPHPXXXXXXXXXXXXXXXXXQSEDKTRSLNA 673
+ LL M+++GA VF S DS+ + E+ T L+A
Sbjct: 645 DELLQMVRYGAEMVFSSKDSTITDED-----------------IDRIIAKGEEATAELDA 687
Query: 674 KYATLGLDELQRFNQDSA--YEWDGQN-FKKKVE-KDIINPLFIPPTKRERSTNANYSVD 729
K D +Q DSA Y++D N + KV+ K I++ + P KRER NYS
Sbjct: 688 KMKKFTEDAIQFKMDDSADFYDFDDDNKDESKVDFKKIVSENWNDPPKRER--KRNYSEV 745
Query: 730 NYYKDVLNPGRNNQYTVP--PKMPKLQPLNSHQLLRPQLKAIYEKERMWIAKKNNYVPNL 787
Y+K L G + P P+MP+L + R L +YEKE ++ + +
Sbjct: 746 EYFKQTLRQGAPAKPKEPRIPRMPQLHDFQFFNIQR--LTELYEKEVRYLMQAHQKTQMK 803
Query: 788 DDVVTTYGXXXXXXXXXXXXXXXXXSIANAEPLTEEETNNK---IEWEKEGFHNW-NKLD 843
D + +PLT EE K +E + + + D
Sbjct: 804 DTIEVDEPEEV------------------GDPLTAEEVEEKELLLEEASQTIRPYCGRRD 845
Query: 844 FRKFITASGKHGRNSIQAIAAEFGGSKTEEEVRAYAKAFWANLERVEDYERYVKNIETEE 903
F FI A K+GRN I++IA+E G KTEEEV YA+ F + + DY+R +KNIE E
Sbjct: 846 FNAFIRACEKYGRNDIKSIASEMEG-KTEEEVERYAQVFQVRYKELNDYDRIIKNIERGE 904
Query: 904 ERVRRVKMNQEALRRKISQCANPLFELKLKFPPSTNNKRTFSEEEDRFILLMLFKYGLDR 963
R+ R +A+ +K+ + NP ELK+++ N + ++EE DRF++ M+ K G
Sbjct: 905 ARISRKDEIMKAIGKKLDRYRNPWLELKIQY--GQNKGKLYNEECDRFMICMVHKLGYGN 962
Query: 964 ENVYEMIRDEIKHHPLFELDFFFQSRTPIELQRRTITLLQCLEKE 1008
++ ++ + PLF D+F +SRT EL RR TL++ +EKE
Sbjct: 963 ---WDELKAAFRTSPLFRFDWFVKSRTTQELARRCDTLIRLIEKE 1004
>ECU10g1320 [K] KOG0385 Chromatin remodeling complex WSTF-ISWI small subunit
Length = 823
Score = 558 bits (1439), Expect = e-158
Identities = 335/882 (37%), Positives = 489/882 (54%), Gaps = 113/882 (12%)
Query: 128 FQFRESPAYVNGQLRPYQIQGLNWLVALHKNQLAGILADEMGLGKTLQTIAFLGYLRYIE 187
+ F SP +V +LR YQI+GLNWL+ +H+N + ILADEMGLGKTLQTIAFLGY+RY++
Sbjct: 40 YTFISSPRFVLYELRDYQIEGLNWLINMHENSINCILADEMGLGKTLQTIAFLGYIRYVK 99
Query: 188 KKNGPFLVIAPKSTLNNWLREINRWTPEVSAFILQGDKEERSKLCHDKLLACDFDICVAS 247
K+ L+I PKSTL NW RE ++ P + ++E + +++++ +D C+ +
Sbjct: 100 KERKRHLIILPKSTLANWRREFRKFMPNYKVRVFYSSRKEMRREA-EEIMSSRWDACLTT 158
Query: 248 YEIIIREKASFKKIDWEYVVIDEAHRIKNEESMLSQVLREFSSRNRLLITGTPLQNNLHE 307
YE+ I ++ + W Y+VIDEAHRIKNE S+LS+++R FS +RLLITGTPLQNN+HE
Sbjct: 159 YEMCINARSILNTVKWSYIVIDEAHRIKNEHSLLSKIVRIFSCDHRLLITGTPLQNNVHE 218
Query: 308 LWALLNFLLPDIFADSATXXXXXXXXXXXXXXXXVVKQLHTVLSPFLLRRIKNDVEGSLL 367
LWALLNF++P+IF D+ ++++ +VL F LRR K DVE SL
Sbjct: 219 LWALLNFIVPEIFNDAEKFESYVMNIDEGDGEA--IRRIRSVLQLFFLRREKIDVEMSLP 276
Query: 368 PKKELNVYVGMSSMQKKWYKQILEKDIDAVNGSNGQKESKTRLLNIVMQLRKCCNHPYLF 427
PKK +N+Y +S MQ++WY+ +L++D+ + + ++ K L+N+VMQLRKCCNHPYLF
Sbjct: 277 PKKIVNLYSKLSPMQREWYRMLLKRDLSPLGST---RDPKGMLMNVVMQLRKCCNHPYLF 333
Query: 428 DGAEPGPPYTTDEHLVYNSAXXXXXXXXXXXXXEQGSRVLIFSQMSRVLDILEDYCYFRE 487
AEP PYT D+H++ NS +GSRVLIFSQMS +LDILEDY FRE
Sbjct: 334 PDAEP-KPYTNDKHIIENSGKMIVLDKLLASLKAKGSRVLIFSQMSMMLDILEDYAMFRE 392
Query: 488 YEYCRIDGSTAHEDRINAIDDYNAPDSKKFIFLLTTRAGGLGINLTTADIVVLYDSDWNP 547
YEYCRIDGST++ DR AID +NA S+KF+FLLTTRAGGLGINL+TAD V+L+DSDWNP
Sbjct: 393 YEYCRIDGSTSYRDRTEAIDGFNAEGSEKFLFLLTTRAGGLGINLSTADTVILFDSDWNP 452
Query: 548 QADLQAMDRAHRIGQKKQVRVFRFVTDNSVEEKILERATQKLKLDQLVIQQGRVTXXXXX 607
Q DLQA DRAHRIGQKKQV VFR +++N+VEE+I+ R+ QKLKLD +++ QGR
Sbjct: 453 QMDLQAQDRAHRIGQKKQVVVFRLISENTVEERIVYRSLQKLKLDDILL-QGRYHRSSSV 511
Query: 608 XXXDSKEGLLSMIQHGAVDVFKSNDSSAMTSQTGTPHPXXXXXXXXXXXXXXXXXQSEDK 667
S+ L+ ++ +G +T G + E+K
Sbjct: 512 ----SQSELIDILANG----------MEITEDEGKDE-----------SIEDVIRRGEEK 546
Query: 668 TRSLNAKYATLGLDELQRFNQDSAYEWDGQNFK-KKVEKDIINPLFIPPTKRERSTNANY 726
TR +N K + + N D Y W+G+++ KK+E I N
Sbjct: 547 TREMNVKLCDFKITDTLNTNID-CYTWEGEDYNVKKIESFIEN----------------- 588
Query: 727 SVDNYYKDVLNPGRNNQYTVPPK-MPKLQPLNSHQLLRPQLKAIYEKERMWIAKKNNYVP 785
S D + GR+++ ++ + P++ +Q +L+ I KE
Sbjct: 589 SRDGH-------GRSSRTSILFRARPRIIEYPEYQFYPKELQEIQRKE------------ 629
Query: 786 NLDDVVTTYGXXXXXXXXXXXXXXXXXSIANAEPLTEEETNNKIEWEKEGFHNWNKLDFR 845
V Y + L+++E K E + +GF +W K DF
Sbjct: 630 -----VKLY--------------------EEGKSLSQDEVLRKKELQSQGF-DWTKKDFH 663
Query: 846 KFITASGKHGRNSIQAIAAEFGGSKTEEEVRAYAKAFWANLERVEDYERYVKNIETEEER 905
+I A K GR+ ++ IA K +++V AY + FW + + D E+ + +I + R
Sbjct: 664 LYIKAVEKVGRDDVEKIAMLL---KHKDDVEAYHRVFWERVNELSDAEKIIGSINRSQRR 720
Query: 906 VRRVKMNQEALRRKISQCANPLFELKLKFPPSTNNKRTFSEEEDRFILLMLFKYGLDREN 965
+ R +E + ++ L + + K +LL L++ LD N
Sbjct: 721 MERKSRIREMIEGDLADINRRLGKSRSKLGDYNG------------LLLGLYRKYLDHPN 768
Query: 966 VYEMIRDEIKHHPLFELDFFFQSRTPIELQRRTITLLQCLEK 1007
E IR +I ++ D++ SRT ++Q+ L+ L K
Sbjct: 769 WAECIRKDILRLSEYKFDYYLLSRTNTDIQKHVNHLIFTLAK 810
>Hs4557447 [K] KOG0384 Chromodomain-helicase DNA-binding protein
Length = 1709
Score = 414 bits (1064), Expect = e-115
Identities = 232/529 (43%), Positives = 325/529 (60%), Gaps = 27/529 (5%)
Query: 131 RESPAYVNG----QLRPYQIQGLNWLVALHKNQLAGILADEMGLGKTLQTIAFLGYLRYI 186
++ P+Y+ G +LR YQ+ GLNWL + ILADEMGLGKT+QTI+FL YL +
Sbjct: 467 KKQPSYIGGHEGLELRDYQLNGLNWLAHSWCKGNSCILADEMGLGKTIQTISFLNYLFHE 526
Query: 187 EKKNGPFLVIAPKSTLNNWLREINRWTPEVSAFILQGDKEERSKL-----CHDKLLACDF 241
+ GPFL++ P STL +W REI W +++A + GD R+ + H + F
Sbjct: 527 HQLYGPFLLVVPLSTLTSWQREIQTWASQMNAVVYLGDINSRNMIRTHEWTHHQTKRLKF 586
Query: 242 DICVASYEIIIREKASFKKIDWEYVVIDEAHRIKNEESMLSQVLREFSSRNRLLITGTPL 301
+I + +YEI++++KA ++W ++ +DEAHR+KN++S+L + L +F S +RLLITGTPL
Sbjct: 587 NILLTTYEILLKDKAFLGGLNWAFIGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPL 646
Query: 302 QNNLHELWALLNFLLPDIFADSATXXXXXXXXXXXXXXXXVVKQLHTVLSPFLLRRIKND 361
QN+L ELW+LL+F++P+ F+ LH L PFLLRR+K D
Sbjct: 647 QNSLKELWSLLHFIMPEKFSSWEDFEEEHGKGREYGYAS-----LHKELEPFLLRRVKKD 701
Query: 362 VEGSLLPKKELNVYVGMSSMQKKWYKQILEKDIDAVNGSNGQKESKTRLLNIVMQLRKCC 421
VE SL K E + + MS++QK++YK IL ++ A+ S G K S + LNI+M+L+KCC
Sbjct: 702 VEKSLPAKVEQILRMEMSALQKQYYKWILTRNYKAL--SKGSKGSTSGFLNIMMELKKCC 759
Query: 422 NHPYLFDGAEPGPPYTTDE---HLVYNSAXXXXXXXXXXXXXEQGSRVLIFSQMSRVLDI 478
NH YL + Y E HL+ +S E+G+RVLIFSQM R+LDI
Sbjct: 760 NHCYLIKPPDNNEFYNKQEALQHLIRSSGKLILLDKLLIRLRERGNRVLIFSQMVRMLDI 819
Query: 479 LEDYCYFREYEYCRIDGSTAHEDRINAIDDYNAPDSKKFIFLLTTRAGGLGINLTTADIV 538
L +Y +R++ + R+DGS E R A+D +NA S+ F FLL+TRAGGLGINL +AD V
Sbjct: 820 LAEYLKYRQFPFQRLDGSIKGELRKQALDHFNAEGSEDFCFLLSTRAGGLGINLASADTV 879
Query: 539 VLYDSDWNPQADLQAMDRAHRIGQKKQVRVFRFVTDNSVEEKILERATQKLKLDQLVIQQ 598
V++DSDWNPQ DLQA RAHRIGQKKQV ++R VT SVEE ILERA +K+ LD LVIQ+
Sbjct: 880 VIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGSVEEDILERAKKKMVLDHLVIQR 939
Query: 599 ----GRVTXXXXXXXXDS----KEGLLSMIQHGAVDVFKSNDSSAMTSQ 639
G+ S KE L ++++ GA ++FK + Q
Sbjct: 940 MDTTGKTVLHTGSAPSSSTPFNKEELSAILKFGAEELFKEPEGEEQEPQ 988
>Hs4557449 [K] KOG0384 Chromodomain-helicase DNA-binding protein
Length = 1739
Score = 412 bits (1058), Expect = e-114
Identities = 231/518 (44%), Positives = 320/518 (61%), Gaps = 26/518 (5%)
Query: 131 RESPAYVNGQ---LRPYQIQGLNWLVALHKNQLAGILADEMGLGKTLQTIAFLGYLRYIE 187
++ PAY+ G+ LR YQ++GLNWL + ILADEMGLGKT+QTI+FL YL +
Sbjct: 471 KKQPAYLGGENLELRDYQLEGLNWLAHSWCKNNSVILADEMGLGKTIQTISFLSYLFHQH 530
Query: 188 KKNGPFLVIAPKSTLNNWLREINRWTPEVSAFILQGDKEERSKL-----CHDKLLACDFD 242
+ GPFL++ P STL +W RE W PE++ + GD R+ + H + F+
Sbjct: 531 QLYGPFLIVVPLSTLTSWQREFEIWAPEINVVVYIGDLMSRNTIREYEWIHSQTKRLKFN 590
Query: 243 ICVASYEIIIREKASFKKIDWEYVVIDEAHRIKNEESMLSQVLREFSSRNRLLITGTPLQ 302
+ +YEI++++K I+W ++ +DEAHR+KN++S+L + L +F S +RLLITGTPLQ
Sbjct: 591 ALITTYEILLKDKTVLGSINWAFLGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQ 650
Query: 303 NNLHELWALLNFLLPDIFADSATXXXXXXXXXXXXXXXXVVKQLHTVLSPFLLRRIKNDV 362
N+L ELW+LL+F++P+ F + LH VL PFLLRR+K DV
Sbjct: 651 NSLKELWSLLHFIMPEKFE-----FWEDFEEDHGKGRENGYQSLHKVLEPFLLRRVKKDV 705
Query: 363 EGSLLPKKELNVYVGMSSMQKKWYKQILEKDIDAVNGSNGQKESKTRLLNIVMQLRKCCN 422
E SL K E + V MS++QK++YK IL ++ A+ + G + S + LNIVM+L+KCCN
Sbjct: 706 EKSLPAKVEQILRVEMSALQKQYYKWILTRNYKAL--AKGTRGSTSGFLNIVMELKKCCN 763
Query: 423 HPYLFDGAEPGPPYTTDE---HLVYNSAXXXXXXXXXXXXXEQGSRVLIFSQMSRVLDIL 479
H YL E E L+ +S E+G+RVLIFSQM R+LDIL
Sbjct: 764 HCYLIKPPEENERENGQEILLSLIRSSGKLILLDKLLTRLRERGNRVLIFSQMVRMLDIL 823
Query: 480 EDYCYFREYEYCRIDGSTAHEDRINAIDDYNAPDSKKFIFLLTTRAGGLGINLTTADIVV 539
+Y + Y + R+DGS E R A+D +NA S+ F FLL+TRAGGLGINL +AD VV
Sbjct: 824 AEYLTIKHYPFQRLDGSIKGEIRKQALDHFNADGSEDFCFLLSTRAGGLGINLASADTVV 883
Query: 540 LYDSDWNPQADLQAMDRAHRIGQKKQVRVFRFVTDNSVEEKILERATQKLKLDQLVIQQ- 598
++DSDWNPQ DLQA RAHRIGQKKQV ++R VT +VEE+I+ERA +K+ LD LVIQ+
Sbjct: 884 IFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGTVEEEIIERAKKKMVLDHLVIQRM 943
Query: 599 ---GRVTXXXXXXXXDS----KEGLLSMIQHGAVDVFK 629
GR +S KE L ++++ GA D+FK
Sbjct: 944 DTTGRTILENNSGRSNSNPFNKEELTAILKFGAEDLFK 981
>At5g19310 [BK] KOG0386 Chromatin remodeling complex SWI/SNF component SWI2
and related ATPases (DNA/RNA helicase superfamily)
Length = 1041
Score = 410 bits (1055), Expect = e-114
Identities = 214/470 (45%), Positives = 299/470 (63%), Gaps = 15/470 (3%)
Query: 139 GQLRPYQIQGLNWLVALHKNQLAGILADEMGLGKTLQTIAFLGYLRYIEKKNGPFLVIAP 198
G+LR YQ++GL W+V+L+ N GILADEMGLGKT+QTIA + YL + +GP L++AP
Sbjct: 361 GELRSYQLEGLQWMVSLYNNDYNGILADEMGLGKTIQTIALIAYLLESKDLHGPHLILAP 420
Query: 199 KSTLNNWLREINRWTPEVSAFILQGDKEERSKLCHDKLLACDFDICVASYEIIIREKASF 258
K+ L NW E W P +SAF+ G KE+R+++ ++ F++ + Y++I+R+KA
Sbjct: 421 KAVLPNWENEFALWAPSISAFLYDGSKEKRTEI-RARIAGGKFNVLITHYDLIMRDKAFL 479
Query: 259 KKIDWEYVVIDEAHRIKNEESMLSQVLRE-FSSRNRLLITGTPLQNNLHELWALLNFLLP 317
KKIDW Y+++DE HR+KN E L++ L + + RLL+TGTP+QN+L ELW+LLNFLLP
Sbjct: 480 KKIDWNYMIVDEGHRLKNHECALAKTLGTGYRIKRRLLLTGTPIQNSLQELWSLLNFLLP 539
Query: 318 DIFAD--------SATXXXXXXXXXXXXXXXXVVKQLHTVLSPFLLRRIKNDVEGSLLPK 369
IF + ++ +LH V+ PFLLRR K++VE L K
Sbjct: 540 HIFNSIHNFEEWFNTPFAECGSASLTDEEELLIINRLHHVIRPFLLRRKKSEVEKFLPGK 599
Query: 370 KELNVYVGMSSMQKKWYKQILEKDIDAVNGSNGQKESKTRLLNIVMQLRKCCNHPYLFDG 429
++ + MS+ QK +YKQ+ + ++ NG+ +S L N+ MQLRKCCNHPYLF G
Sbjct: 600 TQVILKCDMSAWQKLYYKQVTDVGRVGLHSGNGKSKS---LQNLTMQLRKCCNHPYLFVG 656
Query: 430 AEPGPPYTTDEHLVYNSAXXXXXXXXXXXXXEQGSRVLIFSQMSRVLDILEDYCYFREYE 489
A+ +V S + G R+L+FSQM+R++D+LE Y +Y
Sbjct: 657 ADYN--MCKKPEIVRASGKFELLDRLLPKLKKAGHRILLFSQMTRLIDLLEIYLSLNDYM 714
Query: 490 YCRIDGSTAHEDRINAIDDYNAPDSKKFIFLLTTRAGGLGINLTTADIVVLYDSDWNPQA 549
Y R+DGST + R + +N PDS F+FLL+TRAGGLG+NL TAD ++++DSDWNPQ
Sbjct: 715 YLRLDGSTKTDQRGILLKQFNEPDSPYFMFLLSTRAGGLGLNLQTADTIIIFDSDWNPQM 774
Query: 550 DLQAMDRAHRIGQKKQVRVFRFVTDNSVEEKILERATQKLKLDQLVIQQG 599
D QA DRAHRIGQKK+VRVF V+ S+EE ILERA QK+ +D VIQ G
Sbjct: 775 DQQAEDRAHRIGQKKEVRVFVLVSIGSIEEVILERAKQKMGIDAKVIQAG 824
>At2g13370 [K] KOG0384 Chromodomain-helicase DNA-binding protein
Length = 1738
Score = 408 bits (1048), Expect = e-113
Identities = 232/518 (44%), Positives = 324/518 (61%), Gaps = 24/518 (4%)
Query: 132 ESPAY-VNGQLRPYQIQGLNWLVALHKNQLAGILADEMGLGKTLQTIAFLGYLRYIEKKN 190
E P + + G LR YQ++GLN+LV N ILADEMGLGKT+Q+++ LG+L+ ++
Sbjct: 631 EQPEWLIGGTLRDYQLEGLNFLVNSWLNDTNVILADEMGLGKTVQSVSMLGFLQNTQQIP 690
Query: 191 GPFLVIAPKSTLNNWLREINRWTPEVSAFILQG---DKEERSKL--CHDKLLACDFDICV 245
GPFLV+ P STL NW +E +W P ++ + G +E R+K H F+ +
Sbjct: 691 GPFLVVVPLSTLANWAKEFRKWLPGMNIIVYVGTRASREVRNKTNDVHKVGRPIKFNALL 750
Query: 246 ASYEIIIREKASFKKIDWEYVVIDEAHRIKNEESMLSQVLREFSSRNRLLITGTPLQNNL 305
+YE+++++KA KI W Y+++DEAHR+KN E+ L L EFS++N+LLITGTPLQN++
Sbjct: 751 TTYEVVLKDKAVLSKIKWIYLMVDEAHRLKNSEAQLYTALLEFSTKNKLLITGTPLQNSV 810
Query: 306 HELWALLNFLLPDIFADSATXXXXXXXXXXXXXXXXVVKQLHTVLSPFLLRRIKNDVEGS 365
ELWALL+FL P F + + LH L P +LRR+ DVE S
Sbjct: 811 EELWALLHFLDPGKFKNKDEFVENYKNLSSFNESE--LANLHLELRPHILRRVIKDVEKS 868
Query: 366 LLPKKELNVYVGMSSMQKKWYKQILEKDIDAVNGSNGQKESKTRLLNIVMQLRKCCNHPY 425
L PK E + V MS +QK++YK ILE++ +N G + ++ LLNIV++L+KCCNHP+
Sbjct: 869 LPPKIERILRVEMSPLQKQYYKWILERNFHDLN--KGVRGNQVSLLNIVVELKKCCNHPF 926
Query: 426 LFDGAEPGPPYTTD-------EHLVYNSAXXXXXXXXXXXXXEQGSRVLIFSQMSRVLDI 478
LF+ A+ G Y D + ++ +S E RVLIFSQM R+LDI
Sbjct: 927 LFESADHG--YGGDINDNSKLDKIILSSGKLVILDKLLVRLRETKHRVLIFSQMVRMLDI 984
Query: 479 LEDYCYFREYEYCRIDGSTAHEDRINAIDDYNAPDSKKFIFLLTTRAGGLGINLTTADIV 538
L +Y R +++ R+DGST E R A+D +NAP S F FLL+TRAGGLGINL TAD V
Sbjct: 985 LAEYLSLRGFQFQRLDGSTKAELRQQAMDHFNAPASDDFCFLLSTRAGGLGINLATADTV 1044
Query: 539 VLYDSDWNPQADLQAMDRAHRIGQKKQVRVFRFVTDNSVEEKILERATQKLKLDQLVIQ- 597
V++DSDWNPQ DLQAM RAHRIGQ++ V ++RFVT SVEE+ILERA +K+ LD LVIQ
Sbjct: 1045 VIFDSDWNPQNDLQAMSRAHRIGQQEVVNIYRFVTSKSVEEEILERAKRKMVLDHLVIQK 1104
Query: 598 ---QGRVTXXXXXXXXD-SKEGLLSMIQHGAVDVFKSN 631
+GR+ + K L ++++ GA ++FK +
Sbjct: 1105 LNAEGRLEKRETKKGSNFDKNELSAILRFGAEELFKED 1142
>At3g06010 [BK] KOG0386 Chromatin remodeling complex SWI/SNF component SWI2
and related ATPases (DNA/RNA helicase superfamily)
Length = 1132
Score = 405 bits (1042), Expect = e-112
Identities = 221/502 (44%), Positives = 310/502 (61%), Gaps = 17/502 (3%)
Query: 132 ESPAYVNG-QLRPYQIQGLNWLVALHKNQLAGILADEMGLGKTLQTIAFLGYLRYIEKKN 190
E P+ + G +LR YQ++GL W+V+L N L GILADEMGLGKT+QTI+ + YL +
Sbjct: 423 EQPSLLEGGELRSYQLEGLQWMVSLFNNNLNGILADEMGLGKTIQTISLIAYLLENKGVP 482
Query: 191 GPFLVIAPKSTLNNWLREINRWTPEVSAFILQGDKEERSKLCHDKLLACDFDICVASYEI 250
GP+L++APK+ L NW+ E W P ++AF+ G EER + F++ + Y++
Sbjct: 483 GPYLIVAPKAVLPNWVNEFATWVPSIAAFLYDGRLEERKAIREKIAGEGKFNVLITHYDL 542
Query: 251 IIREKASFKKIDWEYVVIDEAHRIKNEESMLSQ-VLREFSSRNRLLITGTPLQNNLHELW 309
I+R+KA KKI+W Y+++DE HR+KN ES L++ +L + + RLL+TGTP+QN+L ELW
Sbjct: 543 IMRDKAFLKKIEWYYMIVDEGHRLKNHESALAKTLLTGYRIKRRLLLTGTPIQNSLQELW 602
Query: 310 ALLNFLLPDIFAD--------SATXXXXXXXXXXXXXXXXVVKQLHTVLSPFLLRRIKND 361
+LLNFLLP IF +A ++ +LH V+ PF+LRR K++
Sbjct: 603 SLLNFLLPHIFNSVQNFEEWFNAPFADRGNVSLTDEEELLIIHRLHHVIRPFILRRKKDE 662
Query: 362 VEGSLLPKKELNVYVGMSSMQKKWYKQILEKDIDAVNGSNGQKESKTRLLNIVMQLRKCC 421
VE L K ++ + MS+ QK +YKQ+ D+ V G +SK+ L N+ MQLRKCC
Sbjct: 663 VEKFLPGKTQVILKCDMSAWQKVYYKQVT--DMGRVGLQTGSGKSKS-LQNLTMQLRKCC 719
Query: 422 NHPYLFDGAEPGPPYTTDEHLVYNSAXXXXXXXXXXXXXEQGSRVLIFSQMSRVLDILED 481
NHPYLF G + +V S + G R+L+FSQM+R++D+LE
Sbjct: 720 NHPYLFVGGDYN--MWKKPEIVRASGKFELLDRLLPKLRKAGHRILLFSQMTRLIDVLEI 777
Query: 482 YCYFREYEYCRIDGSTAHEDRINAIDDYNAPDSKKFIFLLTTRAGGLGINLTTADIVVLY 541
Y +Y+Y R+DG+T + R + +N PDS F+FLL+TRAGGLG+NL TAD V+++
Sbjct: 778 YLTLNDYKYLRLDGTTKTDQRGLLLKQFNEPDSPYFMFLLSTRAGGLGLNLQTADTVIIF 837
Query: 542 DSDWNPQADLQAMDRAHRIGQKKQVRVFRFVTDNSVEEKILERATQKLKLDQLVIQQGRV 601
DSDWNPQ D QA DRAHRIGQKK+VRVF V+ SVEE ILERA QK+ +D VIQ G
Sbjct: 838 DSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSVEEVILERAKQKMGIDAKVIQAG-- 895
Query: 602 TXXXXXXXXDSKEGLLSMIQHG 623
D +E L +++ G
Sbjct: 896 LFNTTSTAQDRREMLEEIMRKG 917
>YIL126w [BK] KOG0386 Chromatin remodeling complex SWI/SNF component SWI2
and related ATPases (DNA/RNA helicase superfamily)
Length = 1359
Score = 405 bits (1040), Expect = e-112
Identities = 215/480 (44%), Positives = 303/480 (62%), Gaps = 17/480 (3%)
Query: 137 VNGQLRPYQIQGLNWLVALHKNQLAGILADEMGLGKTLQTIAFLGYLRYIEKKNGPFLVI 196
V G L+ YQ++GL W+V+L+ N L GILADEMGLGKT+Q+I+ + YL ++K GPFLVI
Sbjct: 466 VGGTLKEYQLRGLEWMVSLYNNHLNGILADEMGLGKTIQSISLITYLYEVKKDIGPFLVI 525
Query: 197 APKSTLNNWLREINRWTPEVSAFILQGDKEERSKLCHDKLLACDFDICVASYEIIIREKA 256
P ST+ NW E +W P ++ I +G +R L H ++ +FD+ + +YE II++K+
Sbjct: 526 VPLSTITNWTLEFEKWAPSLNTIIYKGTPNQRHSLQH-QIRVGNFDVLLTTYEYIIKDKS 584
Query: 257 SFKKIDWEYVVIDEAHRIKNEESMLSQVLREF-SSRNRLLITGTPLQNNLHELWALLNFL 315
K DW +++IDE HR+KN +S LS + + +RNRL++TGTPLQNNL ELWALLNF+
Sbjct: 585 LLSKHDWAHMIIDEGHRMKNAQSKLSFTISHYYRTRNRLILTGTPLQNNLPELWALLNFV 644
Query: 316 LPDIFADSAT-----------XXXXXXXXXXXXXXXXVVKQLHTVLSPFLLRRIKNDVEG 364
LP IF + T ++++LH VL PFLLRR+K +VE
Sbjct: 645 LPKIFNSAKTFEDWFNTPFANTGTQEKLELTEEETLLIIRRLHKVLRPFLLRRLKKEVEK 704
Query: 365 SLLPKKELNVYVGMSSMQKKWYKQILEKDIDAVN-GSNGQKESKTR-LLNIVMQLRKCCN 422
L K E + +S +Q++ Y+Q+L+ + V G+ G + + L N +MQLRK CN
Sbjct: 705 DLPDKVEKVIKCKLSGLQQQLYQQMLKHNALFVGAGTEGATKGGIKGLNNKIMQLRKICN 764
Query: 423 HPYLFDGAEP--GPPYTTDEHLVYNSAXXXXXXXXXXXXXEQGSRVLIFSQMSRVLDILE 480
HP++FD E P + L + G RVL+F QM++V+DI+E
Sbjct: 765 HPFVFDEVEGVVNPSRGNSDLLFRVAGKFELLDRVLPKFKASGHRVLMFFQMTQVMDIME 824
Query: 481 DYCYFREYEYCRIDGSTAHEDRINAIDDYNAPDSKKFIFLLTTRAGGLGINLTTADIVVL 540
D+ ++ +Y R+DGST E+R ++ +NAPDS F FLL+TRAGGLG+NL TAD V++
Sbjct: 825 DFLRMKDLKYMRLDGSTKTEERTEMLNAFNAPDSDYFCFLLSTRAGGLGLNLQTADTVII 884
Query: 541 YDSDWNPQADLQAMDRAHRIGQKKQVRVFRFVTDNSVEEKILERATQKLKLDQLVIQQGR 600
+D+DWNP DLQA DRAHRIGQK +VR+ R +T +SVEE ILERA QKL +D VIQ G+
Sbjct: 885 FDTDWNPHQDLQAQDRAHRIGQKNEVRILRLITTDSVEEVILERAMQKLDIDGKVIQAGK 944
>Hs21071050 [BK] KOG0386 Chromatin remodeling complex SWI/SNF component SWI2 and
related ATPases (DNA/RNA helicase superfamily)
Length = 1568
Score = 401 bits (1030), Expect = e-111
Identities = 221/494 (44%), Positives = 296/494 (59%), Gaps = 30/494 (6%)
Query: 131 RESPAYVNGQLRPYQIQGLNWLVALHKNQLAGILADEMGLGKTLQTIAFLGYLRYIEKKN 190
++S +NG L+ YQ+QGL W+V+L+ N L GILADEMGLGKT+QTIA + YL ++ N
Sbjct: 710 KQSALLINGTLKHYQLQGLEWMVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRLN 769
Query: 191 GPFLVIAPKSTLNNWLREINRWTPEVSAFILQGDKEERSKLCHDKLLACDFDICVASYEI 250
GP+L+I P STL+NW E ++W P V +G R L +L + F++ + +YE
Sbjct: 770 GPYLIIVPLSTLSNWTYEFDKWAPSVVKISYKGTPAMRRSLV-PQLRSGKFNVLLTTYEY 828
Query: 251 IIREKASFKKIDWEYVVIDEAHRIKNEESMLSQVLR-EFSSRNRLLITGTPLQNNLHELW 309
II++K KI W+Y+++DE HR+KN L+QVL + + R+L+TGTPLQN L ELW
Sbjct: 829 IIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNKLPELW 888
Query: 310 ALLNFLLPDIFADSAT---------XXXXXXXXXXXXXXXXVVKQLHTVLSPFLLRRIKN 360
ALLNFLLP IF +T ++++LH VL PFLLRR+K
Sbjct: 889 ALLNFLLPTIFKSCSTFEQWFNAPFAMTGERVDLNEEETILIIRRLHKVLRPFLLRRLKK 948
Query: 361 DVEGSLLPKKELNVYVGMSSMQKKWYKQILEKDIDAVNGSNGQKESK---TRLLNIVMQL 417
+VE L K E + MS++QK Y+ + K I +GS K+ K L+N +MQL
Sbjct: 949 EVESQLPEKVEYVIKCDMSALQKILYRHMQAKGILLTDGSEKDKKGKGGAKTLMNTIMQL 1008
Query: 418 RKCCNHPYLFDGAEPGPPYTTDEHLVYNSAXXXXXXXXXXXXXEQ------------GSR 465
RK CNHPY+F E + EHL Y++ + R
Sbjct: 1009 RKICNHPYMFQHIEE----SFAEHLGYSNGVINGAELYRASGKFELLDRILPKLRATNHR 1064
Query: 466 VLIFSQMSRVLDILEDYCYFREYEYCRIDGSTAHEDRINAIDDYNAPDSKKFIFLLTTRA 525
VL+F QM+ ++ I+EDY FR + Y R+DG+T EDR + +N P S+ FIFLL+TRA
Sbjct: 1065 VLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAALLKKFNEPGSQYFIFLLSTRA 1124
Query: 526 GGLGINLTTADIVVLYDSDWNPQADLQAMDRAHRIGQKKQVRVFRFVTDNSVEEKILERA 585
GGLG+NL AD VV++DSDWNP DLQA DRAHRIGQ+ +VRV R T NSVEEKIL A
Sbjct: 1125 GGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAA 1184
Query: 586 TQKLKLDQLVIQQG 599
KL +DQ VIQ G
Sbjct: 1185 KYKLNVDQKVIQAG 1198
>Hs21071048 [BK] KOG0386 Chromatin remodeling complex SWI/SNF component SWI2 and
related ATPases (DNA/RNA helicase superfamily)
Length = 1586
Score = 401 bits (1030), Expect = e-111
Identities = 221/494 (44%), Positives = 296/494 (59%), Gaps = 30/494 (6%)
Query: 131 RESPAYVNGQLRPYQIQGLNWLVALHKNQLAGILADEMGLGKTLQTIAFLGYLRYIEKKN 190
++S +NG L+ YQ+QGL W+V+L+ N L GILADEMGLGKT+QTIA + YL ++ N
Sbjct: 710 KQSALLINGTLKHYQLQGLEWMVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRLN 769
Query: 191 GPFLVIAPKSTLNNWLREINRWTPEVSAFILQGDKEERSKLCHDKLLACDFDICVASYEI 250
GP+L+I P STL+NW E ++W P V +G R L +L + F++ + +YE
Sbjct: 770 GPYLIIVPLSTLSNWTYEFDKWAPSVVKISYKGTPAMRRSLV-PQLRSGKFNVLLTTYEY 828
Query: 251 IIREKASFKKIDWEYVVIDEAHRIKNEESMLSQVLR-EFSSRNRLLITGTPLQNNLHELW 309
II++K KI W+Y+++DE HR+KN L+QVL + + R+L+TGTPLQN L ELW
Sbjct: 829 IIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNKLPELW 888
Query: 310 ALLNFLLPDIFADSAT---------XXXXXXXXXXXXXXXXVVKQLHTVLSPFLLRRIKN 360
ALLNFLLP IF +T ++++LH VL PFLLRR+K
Sbjct: 889 ALLNFLLPTIFKSCSTFEQWFNAPFAMTGERVDLNEEETILIIRRLHKVLRPFLLRRLKK 948
Query: 361 DVEGSLLPKKELNVYVGMSSMQKKWYKQILEKDIDAVNGSNGQKESK---TRLLNIVMQL 417
+VE L K E + MS++QK Y+ + K I +GS K+ K L+N +MQL
Sbjct: 949 EVESQLPEKVEYVIKCDMSALQKILYRHMQAKGILLTDGSEKDKKGKGGAKTLMNTIMQL 1008
Query: 418 RKCCNHPYLFDGAEPGPPYTTDEHLVYNSAXXXXXXXXXXXXXEQ------------GSR 465
RK CNHPY+F E + EHL Y++ + R
Sbjct: 1009 RKICNHPYMFQHIEE----SFAEHLGYSNGVINGAELYRASGKFELLDRILPKLRATNHR 1064
Query: 466 VLIFSQMSRVLDILEDYCYFREYEYCRIDGSTAHEDRINAIDDYNAPDSKKFIFLLTTRA 525
VL+F QM+ ++ I+EDY FR + Y R+DG+T EDR + +N P S+ FIFLL+TRA
Sbjct: 1065 VLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAALLKKFNEPGSQYFIFLLSTRA 1124
Query: 526 GGLGINLTTADIVVLYDSDWNPQADLQAMDRAHRIGQKKQVRVFRFVTDNSVEEKILERA 585
GGLG+NL AD VV++DSDWNP DLQA DRAHRIGQ+ +VRV R T NSVEEKIL A
Sbjct: 1125 GGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAA 1184
Query: 586 TQKLKLDQLVIQQG 599
KL +DQ VIQ G
Sbjct: 1185 KYKLNVDQKVIQAG 1198
>SPAC1783.05 [K] KOG0384 Chromodomain-helicase DNA-binding protein
Length = 1373
Score = 398 bits (1022), Expect = e-110
Identities = 224/521 (42%), Positives = 314/521 (59%), Gaps = 22/521 (4%)
Query: 129 QFRESPAYVNG-QLRPYQIQGLNWLVALHKNQLAGILADEMGLGKTLQTIAFLGYLRYIE 187
+ + P+Y+ G ++R +Q+ G+NW+ L GILADEMGLGKT+QT+ FL YL +
Sbjct: 377 KLEKQPSYIKGGEIRDFQLTGINWMAYLWHRNENGILADEMGLGKTVQTVCFLSYLVHSL 436
Query: 188 KKNGPFLVIAPKSTLNNWLREINRWTPEVSAFILQGDKEERSKLCHDKLLACD------F 241
K++GPFL++ P ST+ W + WTP++++ G+ E R+ + + F
Sbjct: 437 KQHGPFLIVVPLSTVPAWQETLANWTPDLNSICYTGNTESRANIREYEFYLSTNSRKLKF 496
Query: 242 DICVASYEIIIREKASFKKIDWEYVVIDEAHRIKNEESMLSQVLREFSSRNRLLITGTPL 301
+I + +YE I+++K I W+Y+ IDEAHR+KN ES L + L +F + NRLLITGTPL
Sbjct: 497 NILLTTYEYILKDKQELNNIRWQYLAIDEAHRLKNSESSLYETLSQFRTANRLLITGTPL 556
Query: 302 QNNLHELWALLNFLLPDIFADSATXXXXXXXXXXXXXXXXVVKQLHTVLSPFLLRRIKND 361
QNNL EL +L+NFL+P F ++ L L PF+LRR+K D
Sbjct: 557 QNNLKELASLVNFLMPGKFY----IRDELNFDQPNAEQERDIRDLQERLQPFILRRLKKD 612
Query: 362 VEGSLLPKKELNVYVGMSSMQKKWYKQILEKDIDAVNGSNGQKESKTRLLNIVMQLRKCC 421
VE SL K E + V +S MQ +WYK IL K+ A+ G + + LLNIV++L+K
Sbjct: 613 VEKSLPSKSERILRVELSDMQTEWYKNILTKNYRALTGHTDGR-GQLSLLNIVVELKKVS 671
Query: 422 NHPYLFDGAEP----GPPYTTDEHL---VYNSAXXXXXXXXXXXXXEQGSRVLIFSQMSR 474
NHPYLF GA G T ++ L + NS G RVLIFSQM R
Sbjct: 672 NHPYLFPGAAEKWMMGRKMTREDTLRGIIMNSGKMVLLDKLLQRLKHDGHRVLIFSQMVR 731
Query: 475 VLDILEDYCYFREYEYCRIDGSTAHEDRINAIDDYNAPDSKKFIFLLTTRAGGLGINLTT 534
+L+IL +Y R Y Y R+DG+ R +ID +NAPDS F+FLL+TRAGGLGINL T
Sbjct: 732 MLNILGEYMSLRGYNYQRLDGTIPASVRRVSIDHFNAPDSPDFVFLLSTRAGGLGINLNT 791
Query: 535 ADIVVLYDSDWNPQADLQAMDRAHRIGQKKQVRVFRFVTDNSVEEKILERATQKLKLDQL 594
AD V+++DSDWNPQADLQAM RAHRIGQK V V+RF++ ++VEE ILERA +K+ L+
Sbjct: 792 ADTVIIFDSDWNPQADLQAMARAHRIGQKNHVNVYRFLSKDTVEEDILERARRKMILEYA 851
Query: 595 VIQQGRVTXXXXXXXXDSKEG--LLSMIQHGAVDVFKSNDS 633
+I G VT D + L ++++ GA ++FK+ ++
Sbjct: 852 IISLG-VTEKSKNSKNDKYDAQELSAILKFGASNMFKATEN 891
>SPAC1250.01 [BK] KOG0386 Chromatin remodeling complex SWI/SNF component SWI2
and related ATPases (DNA/RNA helicase superfamily)
Length = 1199
Score = 397 bits (1021), Expect = e-110
Identities = 210/478 (43%), Positives = 295/478 (60%), Gaps = 15/478 (3%)
Query: 137 VNGQLRPYQIQGLNWLVALHKNQLAGILADEMGLGKTLQTIAFLGYLRYIEKKNGPFLVI 196
V G+L+ YQ++GL W+++L+ N L GILADEMGLGKT+QTI+ + +L +++NGPFLVI
Sbjct: 413 VGGKLKEYQLRGLQWMISLYNNHLNGILADEMGLGKTIQTISLITHLIEKKRQNGPFLVI 472
Query: 197 APKSTLNNWLREINRWTPEVSAFILQGDKEERSKLCHDKLLACDFDICVASYEIIIREKA 256
P STL NW E RW P + + +G + R L H ++ +F + + +YE II+++
Sbjct: 473 VPLSTLTNWTMEFERWAPSIVKIVYKGPPQVRKAL-HPQVRHSNFQVLLTTYEYIIKDRP 531
Query: 257 SFKKIDWEYVVIDEAHRIKNEESMLSQVLREF-SSRNRLLITGTPLQNNLHELWALLNFL 315
+I W Y++IDE HR+KN +S L+ L + SSR RL++TGTPLQNNL ELWALLNF+
Sbjct: 532 LLSRIKWIYMIIDEGHRMKNTQSKLTNTLTTYYSSRYRLILTGTPLQNNLPELWALLNFV 591
Query: 316 LPDIF-----------ADSATXXXXXXXXXXXXXXXXVVKQLHTVLSPFLLRRIKNDVEG 364
LP IF A V+++LH VL PFLLRR+K DVE
Sbjct: 592 LPRIFNSIKSFDEWFNTPFANTGGQDKMELTEEESLLVIRRLHKVLRPFLLRRLKKDVEA 651
Query: 365 SLLPKKELNVYVGMSSMQKKWYKQILEKDIDAVNGSNGQKESKTRLLNIVMQLRKCCNHP 424
L K E + MS +Q+K Y Q+ + + V + K L N VMQL+K CNHP
Sbjct: 652 ELPDKVEKVIRCQMSGLQQKLYYQMKKHGMLYVEDAKRGKTGIKGLQNTVMQLKKICNHP 711
Query: 425 YLFDGAEPG--PPYTTDEHLVYNSAXXXXXXXXXXXXXEQGSRVLIFSQMSRVLDILEDY 482
++F+ E P + L S G R+L+F QM+++++I+EDY
Sbjct: 712 FVFEDVERSIDPTGFNYDMLWRVSGKFELLDRILPKLFRSGHRILMFFQMTQIMNIMEDY 771
Query: 483 CYFREYEYCRIDGSTAHEDRINAIDDYNAPDSKKFIFLLTTRAGGLGINLTTADIVVLYD 542
++R++ Y R+DGST +DR + +N P ++ +FLL+TRAGGLG+NL TAD V+++D
Sbjct: 772 LHYRQWRYLRLDGSTKADDRSKLLGVFNDPTAEVNLFLLSTRAGGLGLNLQTADTVIIFD 831
Query: 543 SDWNPQADLQAMDRAHRIGQKKQVRVFRFVTDNSVEEKILERATQKLKLDQLVIQQGR 600
SDWNP DLQA DRAHRIGQ K+VR++R +T+ SVEE IL RA KL +D VIQ G+
Sbjct: 832 SDWNPHQDLQAQDRAHRIGQTKEVRIYRLITEKSVEENILARAQYKLDIDGKVIQAGK 889
>CE27114 [BK] KOG0386 Chromatin remodeling complex SWI/SNF component SWI2
and related ATPases (DNA/RNA helicase superfamily)
Length = 1336
Score = 396 bits (1018), Expect = e-110
Identities = 243/616 (39%), Positives = 337/616 (54%), Gaps = 40/616 (6%)
Query: 140 QLRPYQIQGLNWLVALHKNQLAGILADEMGLGKTLQTIAFLGYLRYIEKKNGPFLVIAPK 199
+L+PYQI+GL W+V+L N L GILADEMGLGKT+QTIAF+ YL I+K +GPFLVI P
Sbjct: 365 KLKPYQIKGLEWMVSLFNNNLNGILADEMGLGKTIQTIAFITYLMEIKKTSGPFLVIVPL 424
Query: 200 STLNNWLREINRWTPEVSAFILQGDKEERSKLCHDKLLACDFDICVASYEIIIREKASFK 259
ST+ NW E ++W V +G KE R K+ + + F++ + ++E +IREKA
Sbjct: 425 STVPNWQNEFDKWAANVHLIAYKGPKETR-KVFEPIIKSGKFNVLLTTFEYVIREKALLG 483
Query: 260 KIDWEYVVIDEAHRIKNEESMLSQVLR-EFSSRNRLLITGTPLQNNLHELWALLNFLLPD 318
K+ W+Y++IDE HR+KN+ L+++L F + RLLITGTPLQN L ELWALLNFLLP
Sbjct: 484 KLRWKYMIIDEGHRLKNQHCKLTEMLNTRFQCQRRLLITGTPLQNKLPELWALLNFLLPS 543
Query: 319 IFADSAT---------XXXXXXXXXXXXXXXXVVKQLHTVLSPFLLRRIKNDVEGSLLPK 369
IF+ +T ++++LH VL PFLLRR+K +VE L K
Sbjct: 544 IFSSCSTFEQWFNAPFATTGEKVELTQEETMLIIRRLHKVLRPFLLRRLKKEVESELPDK 603
Query: 370 KELNVYVGMSSMQKKWYKQILEKDIDAVNGSNGQKESKTRLLNIVMQLRKCCNHPYLFDG 429
E V MS++QK YK + + + + G K L N ++ LRK CNHP+LF+
Sbjct: 604 MEFVVRCDMSALQKVLYKHMQKGLLLDGKTNTGSKS----LRNTMIHLRKLCNHPFLFEN 659
Query: 430 AEPGPPYTTDEHLVYN------SAXXXXXXXXXXXXXEQGSRVLIFSQMSRVLDILEDYC 483
E D + S G RVL+F QM+ ++ I+ED+
Sbjct: 660 VEESCRNFWDARFISAVDLYRVSGKLELLSRILPKLQATGHRVLMFFQMTSMMTIVEDFL 719
Query: 484 YFREYEYCRIDGSTAHEDRINAIDDYNAPDSKKFIFLLTTRAGGLGINLTTADIVVLYDS 543
+Y R+DGST ++R +D +NAP+S+ F+F+L+TRAGGLG+NL TAD V+++DS
Sbjct: 720 AGGTIQYLRLDGSTKPDERGALLDKFNAPNSEYFLFMLSTRAGGLGLNLQTADTVIIFDS 779
Query: 544 DWNPQADLQAMDRAHRIGQKKQVRVFRFVTDNSVEEKILERATQKLKLDQLVIQQGRVTX 603
DWNP D+QA DRAHRIGQK +VRVFR +T NSVEEKIL A KL +D+ VIQ G+
Sbjct: 780 DWNPHQDMQAQDRAHRIGQKAEVRVFRLITANSVEEKILAAARYKLNVDEKVIQAGK--F 837
Query: 604 XXXXXXXDSKEGLLSMIQHGAVDVFKSNDSSAMTSQTGTPHPXXXXXXXXXXXXXXXXXQ 663
+ +E L ++I+ N+S P+ Q
Sbjct: 838 DNRSTGAERREILENIIK-------TENESE---EDEEVPNDEDINDILSRSEEEFELFQ 887
Query: 664 SEDKTRSLN-----AKYATLGLDELQRFNQDSAYEWDGQNFKKKVEKDIINPLFIPPTKR 718
D+ R N AK +G DE+ R +A E D +K E+ + L + P R
Sbjct: 888 KMDQERFENEQAQKAKPRLVGEDEIPRDILRAADETD--YIEKAKEEGRVPYLEVMPGSR 945
Query: 719 ERSTNANYSVDNYYKD 734
+YS D D
Sbjct: 946 RTRREVDYSADTMSDD 961
>CE05553 [BK] KOG0386 Chromatin remodeling complex SWI/SNF component SWI2 and
related ATPases (DNA/RNA helicase superfamily)
Length = 1474
Score = 396 bits (1017), Expect = e-109
Identities = 210/476 (44%), Positives = 295/476 (61%), Gaps = 21/476 (4%)
Query: 141 LRPYQIQGLNWLVALHKNQLAGILADEMGLGKTLQTIAFLGYLRYIEKKNGPFLVIAPKS 200
L+PYQI+GL W+V+L+ N L GILADEMGLGKT+QTI+ + YL +++ NGP+LVI P S
Sbjct: 533 LKPYQIKGLEWMVSLYNNNLNGILADEMGLGKTIQTISLVTYLMEVKQNNGPYLVIVPLS 592
Query: 201 TLNNWLREINRWTPEVSAFILQGDKEERSKLCHDKLLACDFDICVASYEIIIREKASFKK 260
TL+NW E +W P V+ I +G K+ R ++ ++ F++ + +YE +I+EKA K
Sbjct: 593 TLSNWQNEFAKWAPSVTTIIYKGTKDARRRV-EGQIRKGAFNVLMTTYEYVIKEKALLGK 651
Query: 261 IDWEYVVIDEAHRIKNEESMLSQVLRE-FSSRNRLLITGTPLQNNLHELWALLNFLLPDI 319
I W+Y++IDE HR+KN L+ +L F +++RLL+TGTPLQN L ELWALLNFLLP I
Sbjct: 652 IRWKYMIIDEGHRLKNHNCKLTLMLNGFFHAQHRLLLTGTPLQNKLPELWALLNFLLPSI 711
Query: 320 FADSAT---------XXXXXXXXXXXXXXXXVVKQLHTVLSPFLLRRIKNDVEGSLLPKK 370
F+ T ++++LH VL PFLLRR+K +VE L K
Sbjct: 712 FSSCGTFEQWFNAPFATTGEKVELNQEETMLIIRRLHKVLRPFLLRRLKKEVESQLPDKT 771
Query: 371 ELNVYVGMSSMQKKWYKQILEKDIDAVNGSNGQKESKTRLLNIVMQLRKCCNHPYLFDGA 430
E + S++QK Y+ + + + S+G + L+N V+ LRK CNHP+LF
Sbjct: 772 EYVIKCDQSALQKVIYRHMQKGLLLDAKMSSGARS----LMNTVVHLRKLCNHPFLFPNI 827
Query: 431 EPG------PPYTTDEHLVYNSAXXXXXXXXXXXXXEQGSRVLIFSQMSRVLDILEDYCY 484
E L+ + G R+L+F QM+ +++I ED+
Sbjct: 828 EDSCRAYWKVNEVNGTDLMRVAGKLELLDRILPKLKATGHRILMFFQMTSMMNIFEDFLN 887
Query: 485 FREYEYCRIDGSTAHEDRINAIDDYNAPDSKKFIFLLTTRAGGLGINLTTADIVVLYDSD 544
FR Y Y R+DGST ++R + + +NAP+S F+F+L+TRAGGLG+NL TAD V+++DSD
Sbjct: 888 FRRYTYLRLDGSTKPDERGDLLTQFNAPNSDLFLFMLSTRAGGLGLNLQTADTVIIFDSD 947
Query: 545 WNPQADLQAMDRAHRIGQKKQVRVFRFVTDNSVEEKILERATQKLKLDQLVIQQGR 600
WNP D+QA DRAHRIGQKK+VRV R +T NSVEEKIL A KL +D+ VIQ G+
Sbjct: 948 WNPHQDMQAQDRAHRIGQKKEVRVLRLITANSVEEKILAAARYKLNVDEKVIQAGK 1003
>Hs21071056 [BK] KOG0386 Chromatin remodeling complex SWI/SNF component SWI2 and
related ATPases (DNA/RNA helicase superfamily)
Length = 1647
Score = 395 bits (1015), Expect = e-109
Identities = 218/494 (44%), Positives = 295/494 (59%), Gaps = 30/494 (6%)
Query: 131 RESPAYVNGQLRPYQIQGLNWLVALHKNQLAGILADEMGLGKTLQTIAFLGYLRYIEKKN 190
++S VNG L+ YQI+GL WLV+L+ N L GILADEMGLGKT+QTIA + YL ++ N
Sbjct: 744 KQSALMVNGVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRIN 803
Query: 191 GPFLVIAPKSTLNNWLREINRWTPEVSAFILQGDKEERSKLCHDKLLACDFDICVASYEI 250
GPFL+I P STL+NW E ++W P V +G R +L + F++ + +YE
Sbjct: 804 GPFLIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRAFV-PQLRSGKFNVLLTTYEY 862
Query: 251 IIREKASFKKIDWEYVVIDEAHRIKNEESMLSQVLR-EFSSRNRLLITGTPLQNNLHELW 309
II++K KI W+Y+++DE HR+KN L+QVL + + RLL+TGTPLQN L ELW
Sbjct: 863 IIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKLPELW 922
Query: 310 ALLNFLLPDIFADSAT---------XXXXXXXXXXXXXXXXVVKQLHTVLSPFLLRRIKN 360
ALLNFLLP IF +T ++++LH VL PFLLRR+K
Sbjct: 923 ALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETILIIRRLHKVLRPFLLRRLKK 982
Query: 361 DVEGSLLPKKELNVYVGMSSMQKKWYKQILEKDIDAVNGSNGQKESK---TRLLNIVMQL 417
+VE L K E + MS++Q+ Y+ + K + +GS K+ K L+N +MQL
Sbjct: 983 EVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDGSEKDKKGKGGTKTLMNTIMQL 1042
Query: 418 RKCCNHPYLFDGAEPGPPYTTDEHLVYNSAXXXXXXXXXXXXXEQ------------GSR 465
RK CNHPY+F E + EHL + + +
Sbjct: 1043 RKICNHPYMFQHIEE----SFSEHLGFTGGIVQGLDLYRASGKFELLDRILPKLRATNHK 1098
Query: 466 VLIFSQMSRVLDILEDYCYFREYEYCRIDGSTAHEDRINAIDDYNAPDSKKFIFLLTTRA 525
VL+F QM+ ++ I+EDY +R ++Y R+DG+T EDR + +N P S+ FIFLL+TRA
Sbjct: 1099 VLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFNEPGSEYFIFLLSTRA 1158
Query: 526 GGLGINLTTADIVVLYDSDWNPQADLQAMDRAHRIGQKKQVRVFRFVTDNSVEEKILERA 585
GGLG+NL +AD V+++DSDWNP DLQA DRAHRIGQ+ +VRV R T NSVEEKIL A
Sbjct: 1159 GGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAA 1218
Query: 586 TQKLKLDQLVIQQG 599
KL +DQ VIQ G
Sbjct: 1219 KYKLNVDQKVIQAG 1232
>CE03657 [R] KOG0383 Predicted helicase
Length = 1787
Score = 395 bits (1015), Expect = e-109
Identities = 225/536 (41%), Positives = 310/536 (56%), Gaps = 36/536 (6%)
Query: 125 DVDFQFRESPAYVN---GQLRPYQIQGLNWLVALHKNQLAGILADEMGLGKTLQTIAFLG 181
D+ ++ P +++ G L PYQ++G+NWL N ILADEMGLGKT+Q++ FL
Sbjct: 597 DILKKYEVQPDFISETGGNLHPYQLEGINWLRHCWSNGTDAILADEMGLGKTVQSLTFLY 656
Query: 182 YLRYIEKKNGPFLVIAPKSTLNNWLREINRWTPEVSAFILQGDKEERSKLCHDKLLACD- 240
L GPFL+ AP ST+ NW RE W P+ GD+E R + + D
Sbjct: 657 TLMKEGHTKGPFLIAAPLSTIINWEREAELWCPDFYVVTYVGDRESRMVIREHEFSFVDG 716
Query: 241 ------------------FDICVASYEIIIREKASFKKIDWEYVVIDEAHRIKNEESMLS 282
F + + SYE I +KA IDW +V+DEAHR+KN +S
Sbjct: 717 AVRGGPKVSKIKTLENLKFHVLLTSYECINMDKAILSSIDWAALVVDEAHRLKNNQSTFF 776
Query: 283 QVLREFSSRNRLLITGTPLQNNLHELWALLNFLLPDIFADSATXXXXXXXXXXXXXXXXV 342
+ LRE++ + R+L+TGTPLQNNL EL+ LLNFL PD F +
Sbjct: 777 KNLREYNIQYRVLLTGTPLQNNLEELFHLLNFLAPDRFNQLESFTAEFSEISKEDQ---- 832
Query: 343 VKQLHTVLSPFLLRRIKNDVEGSLLPKKELNVYVGMSSMQKKWYKQILEKDIDAVNGSNG 402
+++LH +L P +LRR+K DV + K+EL V V +S+MQKK+YK IL ++ DA+N NG
Sbjct: 833 IEKLHNLLGPHMLRRLKADVLTGMPSKQELIVRVELSAMQKKYYKNILTRNFDALNVKNG 892
Query: 403 QKESKTRLLNIVMQLRKCCNHPYLFDGAEPGPPYTTD-----EHLVYNSAXXXXXXXXXX 457
+ L+NI+M+L+KCCNHPYLF A P + L+ N+
Sbjct: 893 GTQMS--LINIIMELKKCCNHPYLFMKACLEAPKLKNGMYEGSALIKNAGKFVLLQKMLR 950
Query: 458 XXXEQGSRVLIFSQMSRVLDILEDYCYFREYEYCRIDGSTAHEDRINAIDDYNAPDSKKF 517
+ G RVLIFSQM+ +LDILED+C Y+Y RIDGS + R +AID YNAP +K+F
Sbjct: 951 KLKDGGHRVLIFSQMTMMLDILEDFCDVEGYKYERIDGSITGQQRQDAIDRYNAPGAKQF 1010
Query: 518 IFLLTTRAGGLGINLTTADIVVLYDSDWNPQADLQAMDRAHRIGQKKQVRVFRFVTDNSV 577
+FLL+TRAGGLGINL TAD V++YDSDWNP D+QA RAHR+GQK +V ++RFVT SV
Sbjct: 1011 VFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRLGQKHKVMIYRFVTKGSV 1070
Query: 578 EEKILERATQKLKLDQLVIQQGRVTXXXXXXXXDSKEGLLSMIQHGAVDVFKSNDS 633
EE+I A +K+ L LV++ G SK L +++ G ++FK ++
Sbjct: 1071 EERITSVAKKKMLLTHLVVRAG---LGAKDGKSMSKTELDDVLRWGTEELFKEEEA 1123
>7294205 [BK] KOG0386 Chromatin remodeling complex SWI/SNF component SWI2 and
related ATPases (DNA/RNA helicase superfamily)
Length = 1638
Score = 395 bits (1014), Expect = e-109
Identities = 217/483 (44%), Positives = 293/483 (59%), Gaps = 21/483 (4%)
Query: 137 VNGQLRPYQIQGLNWLVALHKNQLAGILADEMGLGKTLQTIAFLGYLRYIEKKNGPFLVI 196
VNG L+ YQI+GL WLV+L+ N L GILADEMGLGKT+QTI+ + YL +K GP+L+I
Sbjct: 769 VNGTLKEYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTISLVTYLMDRKKVMGPYLII 828
Query: 197 APKSTLNNWLREINRWTPEVSAFILQGDKEERSKLCHDKLLACDFDICVASYEIIIREKA 256
P STL NW+ E +W P V +G + R +L +++ A F++ + +YE +I++KA
Sbjct: 829 VPLSTLPNWVLEFEKWAPAVGVVSYKGSPQGR-RLLQNQMRATKFNVLLTTYEYVIKDKA 887
Query: 257 SFKKIDWEYVVIDEAHRIKNEESMLSQVLR-EFSSRNRLLITGTPLQNNLHELWALLNFL 315
KI W+Y++IDE HR+KN L+QVL + + RLL+TGTPLQN L ELWALLNFL
Sbjct: 888 VLAKIQWKYMIIDEGHRMKNHHCKLTQVLNTHYIAPYRLLLTGTPLQNKLPELWALLNFL 947
Query: 316 LPDIFADSAT---------XXXXXXXXXXXXXXXXVVKQLHTVLSPFLLRRIKNDVEGSL 366
LP IF +T ++++LH VL PFLLRR+K +VE L
Sbjct: 948 LPSIFKSCSTFEQWFNAPFATTGEKVELNEEETILIIRRLHKVLRPFLLRRLKKEVEHQL 1007
Query: 367 LPKKELNVYVGMSSMQKKWYKQILEKDIDAVNGSNGQKESK---TRLLNIVMQLRKCCNH 423
K E + MS++Q+ YK + K + +GS K K L+N ++QLRK CNH
Sbjct: 1008 PDKVEYIIKCDMSALQRVLYKHMQSKGVLLTDGSEKGKHGKGGAKALMNTIVQLRKLCNH 1067
Query: 424 PYLFDGAEPGPPYTTDEHLVYN-------SAXXXXXXXXXXXXXEQGSRVLIFSQMSRVL 476
P++F E T H V + S RVL+F QM++ +
Sbjct: 1068 PFMFQHIEEKYCDHTGGHGVVSGPDLYRVSGKFELLDRILPKLKATNHRVLLFCQMTQCM 1127
Query: 477 DILEDYCYFREYEYCRIDGSTAHEDRINAIDDYNAPDSKKFIFLLTTRAGGLGINLTTAD 536
I+EDY +R++ Y R+DG+T EDR + +NA S F+FLL+TRAGGLG+NL TAD
Sbjct: 1128 TIIEDYLGWRQFGYLRLDGTTKAEDRGELLRKFNAKGSDVFVFLLSTRAGGLGLNLQTAD 1187
Query: 537 IVVLYDSDWNPQADLQAMDRAHRIGQKKQVRVFRFVTDNSVEEKILERATQKLKLDQLVI 596
VV++DSDWNP DLQA DRAHRIGQ+ +VRV R +T NSVEE+IL A KL +D+ VI
Sbjct: 1188 TVVIFDSDWNPHQDLQAQDRAHRIGQRNEVRVLRLMTVNSVEERILAAARYKLNMDEKVI 1247
Query: 597 QQG 599
Q G
Sbjct: 1248 QAG 1250
>At5g66750 [K] KOG0385 Chromatin remodeling complex WSTF-ISWI small subunit
Length = 764
Score = 391 bits (1004), Expect = e-108
Identities = 220/484 (45%), Positives = 294/484 (60%), Gaps = 18/484 (3%)
Query: 134 PAYVNGQLRPYQIQGLNWLVALHKNQLAGILADEMGLGKTLQTIAFLGYLRYIEKKNGPF 193
P GQL+ YQ++G+ WL++L +N L GILAD+MGLGKT+QTI FL +L+ +GP+
Sbjct: 195 PLLTGGQLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIGFLSHLKG-NGLDGPY 253
Query: 194 LVIAPKSTLNNWLREINRWTPEVSAFILQGDKEERSKLCHD---KLLACDFDICVASYEI 250
LVIAP STL+NW EI R+TP ++A I GDK +R +L K + F I + SYE+
Sbjct: 254 LVIAPLSTLSNWFNEIARFTPSINAIIYHGDKNQRDELRRKHMPKTVGPKFPIVITSYEV 313
Query: 251 IIRE-KASFKKIDWEYVVIDEAHRIKNEESMLSQVLREFSSRNRLLITGTPLQNNLHELW 309
+ + K + W+YVVIDE HR+KN + L + L+ N+LL+TGTPLQNNL ELW
Sbjct: 314 AMNDAKRILRHYPWKYVVIDEGHRLKNHKCKLLRELKHLKMDNKLLLTGTPLQNNLSELW 373
Query: 310 ALLNFLLPDIFAD----------SATXXXXXXXXXXXXXXXXVVKQLHTVLSPFLLRRIK 359
+LLNF+LPDIF S VV +LH +L PF+LRR+K
Sbjct: 374 SLLNFILPDIFTSHDEFESWFDFSEKNKNEATKEEEEKRRAQVVSKLHGILRPFILRRMK 433
Query: 360 NDVEGSLLPKKELNVYVGMSSMQKKWYKQILEKDIDAVNGSNGQKES--KTRLLNIVMQL 417
DVE SL KKE+ +Y M+ QKK+ + ++ ++A G N + K +L N+V+QL
Sbjct: 434 CDVELSLPRKKEIIMYATMTDHQKKFQEHLVNNTLEAHLGENAIRGQGWKGKLNNLVIQL 493
Query: 418 RKCCNHPYLFDGAEPGPP-YTTDEHLVYNSAXXXXXXXXXXXXXEQGSRVLIFSQMSRVL 476
RK CNHP L G G Y E +V +VLIFSQ +++L
Sbjct: 494 RKNCNHPDLLQGQIDGSYLYPPVEEIVGQCGKFRLLERLLVRLFANNHKVLIFSQWTKLL 553
Query: 477 DILEDYCYFREYEYCRIDGSTAHEDRINAIDDYNAPDSKKFIFLLTTRAGGLGINLTTAD 536
DI++ Y + +E CRIDGS ++R I D++ S IFLL+TRAGGLGINLT AD
Sbjct: 554 DIMDYYFSEKGFEVCRIDGSVKLDERRRQIKDFSDEKSSCSIFLLSTRAGGLGINLTAAD 613
Query: 537 IVVLYDSDWNPQADLQAMDRAHRIGQKKQVRVFRFVTDNSVEEKILERATQKLKLDQLVI 596
+LYDSDWNPQ DLQAMDR HRIGQ K V V+R T S+E ++L+RA KLKL+ +VI
Sbjct: 614 TCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRLSTAQSIETRVLKRAYSKLKLEHVVI 673
Query: 597 QQGR 600
QG+
Sbjct: 674 GQGQ 677
>YOR290c [BK] KOG0386 Chromatin remodeling complex SWI/SNF component SWI2 and
related ATPases (DNA/RNA helicase superfamily)
Length = 1703
Score = 389 bits (999), Expect = e-107
Identities = 213/479 (44%), Positives = 293/479 (60%), Gaps = 16/479 (3%)
Query: 137 VNGQLRPYQIQGLNWLVALHKNQLAGILADEMGLGKTLQTIAFLGYLRYIEKKNGPFLVI 196
V G L+ YQI+GL W+V+L N L GILADEMGLGKT+QTI+ L YL ++ GP+LVI
Sbjct: 763 VGGTLKDYQIKGLQWMVSLFNNHLNGILADEMGLGKTIQTISLLTYLYEMKNIRGPYLVI 822
Query: 197 APKSTLNNWLREINRWTPEVSAFILQGDKEERSKLCHDKLLACDFDICVASYEIIIREKA 256
P STL+NW E +W P + +G ER K K+ A +FD+ + ++E II+E+A
Sbjct: 823 VPLSTLSNWSSEFAKWAPTLRTISFKGSPNER-KAKQAKIRAGEFDVVLTTFEYIIKERA 881
Query: 257 SFKKIDWEYVVIDEAHRIKNEESMLSQVLR-EFSSRNRLLITGTPLQNNLHELWALLNFL 315
K+ W +++IDE HR+KN +S LS L + + RL++TGTPLQNNL ELWALLNF+
Sbjct: 882 LLSKVKWVHMIIDEGHRMKNAQSKLSLTLNTHYHADYRLILTGTPLQNNLPELWALLNFV 941
Query: 316 LPDIF-----------ADSATXXXXXXXXXXXXXXXXVVKQLHTVLSPFLLRRIKNDVEG 364
LP IF A V+++LH VL PFLLRR+K DVE
Sbjct: 942 LPKIFNSVKSFDEWFNTPFANTGGQDKIELSEEETLLVIRRLHKVLRPFLLRRLKKDVEK 1001
Query: 365 SLLPKKELNVYVGMSSMQKKWYKQILEKDIDAVNGSNGQKESKTR-LLNIVMQLRKCCNH 423
L K E V MS++Q+ Y+Q+L+ + N +K R N +MQL+K CNH
Sbjct: 1002 ELPDKVEKVVKCKMSALQQIMYQQMLKYRRLFIGDQNNKKMVGLRGFNNQIMQLKKICNH 1061
Query: 424 PYLFDGAEP--GPPYTTDEHLVYNSAXXXXXXXXXXXXXEQGSRVLIFSQMSRVLDILED 481
P++F+ E P T++ + + G RVLIF QM++++DI+ED
Sbjct: 1062 PFVFEEVEDQINPTRETNDDIWRVAGKFELLDRILPKLKATGHRVLIFFQMTQIMDIMED 1121
Query: 482 YCYFREYEYCRIDGSTAHEDRINAIDDYNAPDSKKFIFLLTTRAGGLGINLTTADIVVLY 541
+ + +Y R+DG T ++R + +NAPDS+ F+L+TRAGGLG+NL TAD V+++
Sbjct: 1122 FLRYINIKYLRLDGHTKSDERSELLRLFNAPDSEYLCFILSTRAGGLGLNLQTADTVIIF 1181
Query: 542 DSDWNPQADLQAMDRAHRIGQKKQVRVFRFVTDNSVEEKILERATQKLKLDQLVIQQGR 600
D+DWNP DLQA DRAHRIGQK +VR+ R +T NSVEE ILERA +KL +D VIQ G+
Sbjct: 1182 DTDWNPHQDLQAQDRAHRIGQKNEVRILRLITTNSVEEVILERAYKKLDIDGKVIQAGK 1240
>CE17716 [R] KOG0383 Predicted helicase
Length = 1829
Score = 387 bits (994), Expect = e-107
Identities = 218/502 (43%), Positives = 294/502 (58%), Gaps = 33/502 (6%)
Query: 125 DVDFQFRESPAYVN---GQLRPYQIQGLNWLVALHKNQLAGILADEMGLGKTLQTIAFLG 181
D+ ++ P YV G+L PYQ++GLNWL N ILADEMGLGKT+Q++ FL
Sbjct: 583 DIRKKYEVQPDYVTETGGKLHPYQLEGLNWLRHCWSNGTDAILADEMGLGKTVQSLTFLY 642
Query: 182 YLRYIEKKNGPFLVIAPKSTLNNWLREINRWTPEVSAFILQGDKEERSKLCHDKLLACD- 240
L GPFL+ AP ST+ NW RE +W P+ G ++ R L + +
Sbjct: 643 SLMKEGHCKGPFLIAAPLSTIINWEREAEQWCPDFYVVTYVGLRDARVVLREHEFSFVEG 702
Query: 241 ------------------FDICVASYEIIIREKASFKKIDWEYVVIDEAHRIKNEESMLS 282
F + + SYE I +K I+W +V+DEAHR+KN +S+
Sbjct: 703 AVRSGPKASKMKTTENMKFHVLLTSYETINMDKTILSSIEWGALVVDEAHRLKNNQSLFF 762
Query: 283 QVLREFSSRNRLLITGTPLQNNLHELWALLNFLLPDIFADSATXXXXXXXXXXXXXXXXV 342
+ L E++ R+L+TGTPLQNNL EL+ LLNFL + F
Sbjct: 763 KNLNEYTIHYRVLLTGTPLQNNLEELFHLLNFLSKERF----NQLEAFTAEFNEISKEDQ 818
Query: 343 VKQLHTVLSPFLLRRIKNDVEGSLLPKKELNVYVGMSSMQKKWYKQILEKDIDAVNGSNG 402
+++LH +L P +LRR+K DV + K EL V V +S+MQKKWYK IL ++ DA+N NG
Sbjct: 819 IEKLHNLLGPHMLRRLKADVLTGMPSKSELIVRVELSAMQKKWYKNILTRNFDALNVKNG 878
Query: 403 QKESKTRLLNIVMQLRKCCNHPYLFDGAEPGPPYTTD-----EHLVYNSAXXXXXXXXXX 457
+ L+N++M+L+KCCNHPYLF AE P + L+ NS
Sbjct: 879 GTQMS--LMNVLMELKKCCNHPYLFVKAELEAPKEKNGMYEGTALIKNSGKFVLLQKMLR 936
Query: 458 XXXEQGSRVLIFSQMSRVLDILEDYCYFREYEYCRIDGSTAHEDRINAIDDYNAPDSKKF 517
+ G RVLIFSQM+R+LDI+ED C + Y Y RIDGS + R +AID YNAP +++F
Sbjct: 937 KLKDGGHRVLIFSQMTRMLDIMEDLCEYEGYRYERIDGSIMGQMRQDAIDRYNAPGAQQF 996
Query: 518 IFLLTTRAGGLGINLTTADIVVLYDSDWNPQADLQAMDRAHRIGQKKQVRVFRFVTDNSV 577
IFLL+TRAGGLGINL TAD V++YDSDWNP D+QA RAHR+GQK +V ++RFVT SV
Sbjct: 997 IFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRLGQKHKVMIYRFVTKKSV 1056
Query: 578 EEKILERATQKLKLDQLVIQQG 599
EEKI A +K+ L+ LV++ G
Sbjct: 1057 EEKITSVAKKKMLLNHLVVRAG 1078
>Hs20533808 [R] KOG0383 Predicted helicase
Length = 1954
Score = 385 bits (988), Expect = e-106
Identities = 228/546 (41%), Positives = 310/546 (56%), Gaps = 38/546 (6%)
Query: 125 DVDFQFRESPAYVN---GQLRPYQIQGLNWLVALHKNQLAGILADEMGLGKTLQTIAFLG 181
D +F + P Y++ G L PYQ++GLNWL ILADEMGLGKT+QTI FL
Sbjct: 681 DPTVKFDKQPWYIDSTGGTLHPYQLEGLNWLRFSWAQGTDTILADEMGLGKTVQTIVFLY 740
Query: 182 YLRYIEKKNGPFLVIAPKSTLNNWLREINRWTPEVSAFILQGDKEERSKLCHD------- 234
L GP+LV AP ST+ NW RE W P+ GDKE RS + +
Sbjct: 741 SLYKEGHSKGPYLVSAPLSTIINWEREFEMWAPDFYVVTYTGDKESRSVIRENEFSFEDN 800
Query: 235 ------------KLLACDFDICVASYEIIIREKASFKKIDWEYVVIDEAHRIKNEESMLS 282
K + F + + SYE+I ++A I+W +V+DEAHR+KN +S
Sbjct: 801 AIRSGKKVFRMKKEVQIKFHVLLTSYELITIDQAILGSIEWACLVVDEAHRLKNNQSKFF 860
Query: 283 QVLREFSSRNRLLITGTPLQNNLHELWALLNFLLPDIFADSATXXXXXXXXXXXXXXXXV 342
+VL + +LL+TGTPLQNNL EL+ LLNFL P+ F +
Sbjct: 861 RVLNSYKIDYKLLLTGTPLQNNLEELFHLLNFLTPERFNN----LEGFLEEFADISKEDQ 916
Query: 343 VKQLHTVLSPFLLRRIKNDVEGSLLPKKELNVYVGMSSMQKKWYKQILEKDIDAVNGSNG 402
+K+LH +L P +LRR+K DV ++ K EL V V +S MQKK+YK IL ++ +A+N G
Sbjct: 917 IKKLHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSQMQKKYYKFILTRNFEALNSKGG 976
Query: 403 QKESKTRLLNIVMQLRKCCNHPYLFDGAEPGPPYTTD-----EHLVYNSAXXXXXXXXXX 457
+ LLNI+M L+KCCNHPYLF A P + LV +S
Sbjct: 977 GNQ--VSLLNIMMDLKKCCNHPYLFPVAAVEAPVLPNGSYDGSSLVKSSGKLMLLQKMLK 1034
Query: 458 XXXEQGSRVLIFSQMSRVLDILEDYCYFREYEYCRIDGSTAHEDRINAIDDYNAPDSKKF 517
++G RVLIFSQM+++LD+LED+ + Y+Y RIDG R AID +NAP +++F
Sbjct: 1035 KLRDEGHRVLIFSQMTKMLDLLEDFLEYEGYKYERIDGGITGGLRQEAIDRFNAPGAQQF 1094
Query: 518 IFLLTTRAGGLGINLTTADIVVLYDSDWNPQADLQAMDRAHRIGQKKQVRVFRFVTDNSV 577
FLL+TRAGGLGINL TAD V++YDSDWNP D+QA RAHRIGQ K+V ++RFVT SV
Sbjct: 1095 CFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTRASV 1154
Query: 578 EEKILERATQKLKLDQLVIQQGRVTXXXXXXXXDSKEGLLSMIQHGAVDVFKSNDSSAMT 637
EE+I + A +K+ L LV++ G +K+ L +++ G ++FK +D M
Sbjct: 1155 EERITQVAKRKMMLTHLVVRPG----LGSKSGSMTKQELDDILKFGTEELFK-DDVEGMM 1209
Query: 638 SQTGTP 643
SQ P
Sbjct: 1210 SQGQRP 1215
>SPAC3G6.01 [K] KOG0384 Chromodomain-helicase DNA-binding protein
Length = 1388
Score = 384 bits (986), Expect = e-106
Identities = 219/523 (41%), Positives = 312/523 (58%), Gaps = 25/523 (4%)
Query: 129 QFRESPAYVNG-QLRPYQIQGLNWLVAL-HKNQLAGILADEMGLGKTLQTIAFLGYLRYI 186
+ + P+Y+ G +LR +Q+ G+NW+ L HKN+ GILADEMGLGKT+QT+AFL YL +
Sbjct: 362 KLEQQPSYITGGELRDFQLTGVNWMAYLWHKNE-NGILADEMGLGKTVQTVAFLSYLAHS 420
Query: 187 EKKNGPFLVIAPKSTLNNWLREINRWTPEVSAFILQGDKEERSKLCH-----DKLLACDF 241
+++GPFLV+ P ST+ W + W +++ G+ R + D F
Sbjct: 421 LRQHGPFLVVVPLSTVPAWQETLALWASDMNCISYLGNTTSRQVIRDYEFYVDGTQKIKF 480
Query: 242 DICVASYEIIIREKASFKKIDWEYVVIDEAHRIKNEESMLSQVLREFSSRNRLLITGTPL 301
++ + +YE ++++++ I W+Y+ IDEAHR+KN ES L + L +F + NRLLITGTPL
Sbjct: 481 NLLLTTYEYVLKDRSVLSNIKWQYMAIDEAHRLKNSESSLYEALSQFKNSNRLLITGTPL 540
Query: 302 QNNLHELWALLNFLLPDIFADSATXXXXXXXXXXXXXXXXVVKQLHTVLSPFLLRRIKND 361
QNN+ EL AL++FL+P F ++ L L P++LRR+K D
Sbjct: 541 QNNIRELAALVDFLMPGKFE----IREEINLEAPDEEQEAYIRSLQEHLQPYILRRLKKD 596
Query: 362 VEGSLLPKKELNVYVGMSSMQKKWYKQILEKDIDAVNGSNGQKESKTRLLNIVMQLRKCC 421
VE SL K E + V +S +Q WYK IL ++ + S S+ LLNIV++L+K
Sbjct: 597 VEKSLPSKSERILRVELSDLQMYWYKNILTRNYRVLTQSISSG-SQISLLNIVVELKKAS 655
Query: 422 NHPYLFDGAEP---------GPPYTTDEHLVYNSAXXXXXXXXXXXXXEQGSRVLIFSQM 472
NHPYLFDG E G + L+ NS G RVLIFSQM
Sbjct: 656 NHPYLFDGVEESWMQKINSQGRRDEVLKGLIMNSGKMVLLDKLLSRLRRDGHRVLIFSQM 715
Query: 473 SRVLDILEDYCYFREYEYCRIDGSTAHEDRINAIDDYNAPDSKKFIFLLTTRAGGLGINL 532
R+LDIL DY R Y + R+DG+ R +ID +NAP+S F+FLL+TRAGGLGINL
Sbjct: 716 VRMLDILGDYLSLRGYPHQRLDGTVPAAVRRTSIDHFNAPNSPDFVFLLSTRAGGLGINL 775
Query: 533 TTADIVVLYDSDWNPQADLQAMDRAHRIGQKKQVRVFRFVTDNSVEEKILERATQKLKLD 592
TAD V+++DSDWNPQADLQAM RAHRIGQK V V+R ++ +++EE +LERA +K+ L+
Sbjct: 776 MTADTVIIFDSDWNPQADLQAMARAHRIGQKNHVMVYRLLSKDTIEEDVLERARRKMILE 835
Query: 593 QLVIQQGRVTXXXXXXXXD--SKEGLLSMIQHGAVDVFKSNDS 633
+I G VT D S E L ++++ GA ++FK+ ++
Sbjct: 836 YAIISLG-VTDKQKNSKNDKFSAEELSAILKFGASNMFKAENN 877
>YER164w [K] KOG0384 Chromodomain-helicase DNA-binding protein
Length = 1468
Score = 383 bits (984), Expect = e-106
Identities = 213/522 (40%), Positives = 305/522 (57%), Gaps = 26/522 (4%)
Query: 132 ESPAYVNGQLRPYQIQGLNWLVALHKNQLAGILADEMGLGKTLQTIAFLGYLRYIEKKNG 191
+ P G+LR +Q+ G+NW+ L GILADEMGLGKT+QT+AF+ +L + ++NG
Sbjct: 367 QPPFIKGGELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFARRQNG 426
Query: 192 PFLVIAPKSTLNNWLREINRWTPEVSAFILQGDKEERSKLCHDKLLA---------CDFD 242
P +++ P ST+ WL +W P+++ G+++ R + + F+
Sbjct: 427 PHIIVVPLSTMPAWLDTFEKWAPDLNCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFN 486
Query: 243 ICVASYEIIIREKASFKKIDWEYVVIDEAHRIKNEESMLSQVLREFSSRNRLLITGTPLQ 302
+ + +YE I++++A I W+++ +DEAHR+KN ES L + L F NR+LITGTPLQ
Sbjct: 487 VLLTTYEYILKDRAELGSIKWQFMAVDEAHRLKNAESSLYESLNSFKVANRMLITGTPLQ 546
Query: 303 NNLHELWALLNFLLPDIFADSATXXXXXXXXXXXXXXXXVVKQLHTVLSPFLLRRIKNDV 362
NN+ EL AL+NFL+P F T + LH + PF+LRR+K DV
Sbjct: 547 NNIKELAALVNFLMPGRF----TIDQEIDFENQDEEQEEYIHDLHRRIQPFILRRLKKDV 602
Query: 363 EGSLLPKKELNVYVGMSSMQKKWYKQILEKDIDAVNGSNGQKESKTRLLNIVMQLRKCCN 422
E SL K E + V +S +Q ++YK IL K+ A+ G K LLNI+ +L+K N
Sbjct: 603 EKSLPSKTERILRVELSDVQTEYYKNILTKNYSALTA--GAKGGHFSLLNIMNELKKASN 660
Query: 423 HPYLFDGAEP------GPPYTTDEH----LVYNSAXXXXXXXXXXXXXEQGSRVLIFSQM 472
HPYLFD AE G T E+ L+ +S + G RVLIFSQM
Sbjct: 661 HPYLFDNAEERVLQKFGDGKMTRENVLRGLIMSSGKMVLLDQLLTRLKKDGHRVLIFSQM 720
Query: 473 SRVLDILEDYCYFREYEYCRIDGSTAHEDRINAIDDYNAPDSKKFIFLLTTRAGGLGINL 532
R+LDIL DY + + R+DG+ R +ID +N+PDS F+FLL+TRAGGLGINL
Sbjct: 721 VRMLDILGDYLSIKGINFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLSTRAGGLGINL 780
Query: 533 TTADIVVLYDSDWNPQADLQAMDRAHRIGQKKQVRVFRFVTDNSVEEKILERATQKLKLD 592
TAD VV++DSDWNPQADLQAM RAHRIGQK V V+R V+ ++VEE++LERA +K+ L+
Sbjct: 781 MTADTVVIFDSDWNPQADLQAMARAHRIGQKNHVMVYRLVSKDTVEEEVLERARKKMILE 840
Query: 593 QLVIQQGRVTXXXXXXXXDSKEGLLS-MIQHGAVDVFKSNDS 633
+I G + G LS +++ GA ++F + D+
Sbjct: 841 YAIISLGVTDGNKYTKKNEPNAGELSAILKFGAGNMFTATDN 882
>Hs20536191 [K] KOG0385 Chromatin remodeling complex WSTF-ISWI small subunit
Length = 897
Score = 383 bits (983), Expect = e-105
Identities = 212/496 (42%), Positives = 294/496 (58%), Gaps = 8/496 (1%)
Query: 141 LRPYQIQGLNWLVALHKNQLAGILADEMGLGKTLQTIAFLGYLRYIEKKNGPFLVIAPKS 200
LR YQ++G+NWL Q IL DEMGLGKT QTIA YL GPFL++ P S
Sbjct: 46 LRSYQLEGVNWLAQRFHCQNGCILGDEMGLGKTCQTIALFIYLAGRLNDEGPFLILCPLS 105
Query: 201 TLNNWLREINRWTPEVSAFILQGDKEERSKLCHDKLLACDFDICVASYEIIIREKASFKK 260
L+NW E+ R+ P +S GDKEER+ L D F + + +YEI +++ + K
Sbjct: 106 VLSNWKEEMQRFAPGLSCVTYAGDKEERACLQQDLKQESRFHVLLTTYEICLKDASFLKS 165
Query: 261 IDWEYVVIDEAHRIKNEESMLSQVLREFSSRNRLLITGTPLQNNLHELWALLNFLLPDIF 320
W +V+DEAHR+KN+ S+L + L EFS LL+TGTP+QN+L EL++LL+F+ PD+F
Sbjct: 166 FPWSVLVVDEAHRLKNQSSLLHKTLSEFSVVFSLLLTGTPIQNSLQELYSLLSFVEPDLF 225
Query: 321 ADSATXXXXXXXXXXXXXXXXVVKQLHTVLSPFLLRRIKNDVEGSLLPKKELNVYVGMSS 380
+ +LH +L PFLLRR+K +V L K E+ +Y GMS+
Sbjct: 226 SKEEVGDFIQRYQDIEKESES-GNELHKLLQPFLLRRVKAEVATELPKKTEVVIYHGMSA 284
Query: 381 MQKKWYKQILEKDIDAVNGSNGQKESKTRLLNIVMQLRKCCNHPYLFDGAEPGPPYTTDE 440
+QKK+YK IL KD+DA + K +L NI+ QLRKC +HPYLFDG EP P+ +
Sbjct: 285 LQKKYYKAILMKDLDAFENETAK---KVKLQNILSQLRKCVDHPYLFDGVEP-EPFEVGD 340
Query: 441 HLVYNSAXXXXXXXXXXXXXEQGSRVLIFSQMSRVLDILEDYCYFREYEYCRIDGSTAHE 500
HL S G RVL+FSQM+++LDIL+DY +R Y Y R+DGS E
Sbjct: 341 HLTEASGKLHLLDKLLAFLYSGGHRVLLFSQMTQMLDILQDYMDYRGYSYERVDGSVRGE 400
Query: 501 DRINAIDDYNAPDSKKFIFLLTTRAGGLGINLTTADIVVLYDSDWNPQADLQAMDRAHRI 560
+R AI ++ F+FLL+TRAGG+G+NLT AD V+ DSD+NPQ DLQA RAHRI
Sbjct: 401 ERHLAIKNFG--QQPIFVFLLSTRAGGVGMNLTAADTVIFVDSDFNPQNDLQAAARAHRI 458
Query: 561 GQKKQVRVFRFVTDNSVEEKILERATQKLKLDQLVIQQGRVTXXXXXXXXDSKEGLLSMI 620
GQ K V+V R + ++VEE + +A KL+L ++I+ G T D+ L ++
Sbjct: 459 GQNKSVKVIRLIGRDTVEEIVYRKAASKLQLTNMIIEGGHFTLGAQKPAADADLQLSEIL 518
Query: 621 QHGAVDVFKSNDSSAM 636
+ G +D +++ S M
Sbjct: 519 KFG-LDKLLASEGSTM 533
>7295870 [K] KOG0384 Chromodomain-helicase DNA-binding protein
Length = 1883
Score = 382 bits (981), Expect = e-105
Identities = 237/622 (38%), Positives = 338/622 (54%), Gaps = 50/622 (8%)
Query: 141 LRPYQIQGLNWLVALHKNQLAGILADEMGLGKTLQTIAFLGYLRYIEKKNGPFLVIAPKS 200
LR YQ+ GLNWL+ + + ILADEMGLGKT+QTI FL L I GPFL + P S
Sbjct: 528 LRDYQMDGLNWLLHSWCKENSVILADEMGLGKTIQTICFLYSLFKIHHLYGPFLCVVPLS 587
Query: 201 TLNNWLREINRWTPEVSAFILQGDKEERSKLCH-----DKLLACDFDICVASYEIIIREK 255
T+ W RE + W P+++ GD + R + + F+ + +YEI++++K
Sbjct: 588 TMTAWQREFDLWAPDMNVVTYLGDIKSRELIQQYEWQFESSKRLKFNCILTTYEIVLKDK 647
Query: 256 ASFKKIDWEYVVIDEAHRIKNEESMLSQVLREFSSRNRLLITGTPLQNNLHELWALLNFL 315
+ W +++DEAHR+KN++S+L + L+EF + +RLLITGTPLQN+L ELWALL+F+
Sbjct: 648 QFLGTLQWAALLVDEAHRLKNDDSLLYKSLKEFDTNHRLLITGTPLQNSLKELWALLHFI 707
Query: 316 LPDIFADSATXXXXXXXXXXXXXXXXVVKQLHTVLSPFLLRRIKNDVEGSLLPKKELNVY 375
+PD F +LH L P++LRR+K DVE SL K E +
Sbjct: 708 MPDKFDTWENFEVQHGNAEDKGYT-----RLHQQLEPYILRRVKKDVEKSLPAKVEQILR 762
Query: 376 VGMSSMQKKWYKQILEKDIDAVNGSNGQKESKTRLLNIVMQLRKCCNHPYLFDGAEPGPP 435
V M+S+QK++YK IL K+ DA+ G++ S + LNIV++L+KCCNH L +E
Sbjct: 763 VEMTSLQKQYYKWILTKNFDALR--KGKRGSTSTFLNIVIELKKCCNHAALIRPSEFELM 820
Query: 436 YTTDEH----LVYNSAXXXXXXXXXXXXXEQGSRVLIFSQMSRVLDILEDYCYFREYEYC 491
+ L+ S E G RVLIFSQM R+LD+L DY R + +
Sbjct: 821 GLQQDEALQTLLKGSGKLVLLDKLLCRLKETGHRVLIFSQMVRMLDVLADYLQKRHFPFQ 880
Query: 492 RIDGSTAHEDRINAIDDYNAPDSKKFIFLLTTRAGGLGINLTTADIVVLYDSDWNPQADL 551
R+DGS E R A+D +NA S+ F FLL+TRAGGLGINL TAD V+++DSDWNPQ DL
Sbjct: 881 RLDGSIKGEMRRQALDHFNAEGSQDFCFLLSTRAGGLGINLATADTVIIFDSDWNPQNDL 940
Query: 552 QAMDRAHRIGQKKQVRVFRFVTDNSVEEKILERATQKLKLDQLVIQQ----GRVTXXXXX 607
QA RAHRIGQK QV ++R VT SVEE+I+ERA QK+ LD LVIQ+ GR
Sbjct: 941 QAQARAHRIGQKNQVNIYRLVTARSVEEQIVERAKQKMVLDHLVIQRMDTTGRTVLDKSG 1000
Query: 608 XXXDS------KEGLLSMIQHGAVDVFKSN-----------DSSAMTSQTGTPHPXXXXX 650
S K+ L ++++ GA ++FK D ++T P
Sbjct: 1001 NGHSSNSNPFNKDDLSAILKFGAEELFKDEQEHDDDLVCDIDEILRRAETRNEDPEMPAD 1060
Query: 651 XXXXXXXXXXXXQSEDKTRSLNAKYATLGLDELQRFNQDSAYEWDG---QNFKKKVEKD- 706
E++ +K D+ +D + +WD + F+K ++
Sbjct: 1061 DLLSAFKVASIAAFEEEPSDSVSKQ-----DQNAAGEEDDSKDWDDIIPEGFRKAIDDQE 1115
Query: 707 ---IINPLFIPPTKRERSTNAN 725
+ L++PP +R+ + N N
Sbjct: 1116 RAKEMEDLYLPP-RRKTAANQN 1136
>Hs4557453 [R] KOG0383 Predicted helicase
Length = 1912
Score = 380 bits (975), Expect = e-105
Identities = 222/532 (41%), Positives = 302/532 (56%), Gaps = 37/532 (6%)
Query: 125 DVDFQFRESPAYVN---GQLRPYQIQGLNWLVALHKNQLAGILADEMGLGKTLQTIAFLG 181
D ++ P Y++ G L PYQ++GLNWL ILADEMGLGKT+QT FL
Sbjct: 707 DPTVKYERQPEYLDATGGTLHPYQMEGLNWLRFSWAQGTDTILADEMGLGKTVQTAVFLY 766
Query: 182 YLRYIEKKNGPFLVIAPKSTLNNWLREINRWTPEVSAFILQGDKEERSKLCHD------- 234
L GPFLV AP ST+ NW RE W P++ GDK+ R+ + +
Sbjct: 767 SLYKEGHSKGPFLVSAPLSTIINWEREFEMWAPDMYVVTYVGDKDSRAIIRENEFSFEDN 826
Query: 235 ------------KLLACDFDICVASYEIIIREKASFKKIDWEYVVIDEAHRIKNEESMLS 282
K + F + + SYE+I + A IDW +++DEAHR+KN +S
Sbjct: 827 AIRGGKKASRMKKEASVKFHVLLTSYELITIDMAILGSIDWACLIVDEAHRLKNNQSKFF 886
Query: 283 QVLREFSSRNRLLITGTPLQNNLHELWALLNFLLPDIFADSATXXXXXXXXXXXXXXXXV 342
+VL +S +++LL+TGTPLQNNL EL+ LLNFL P+ F +
Sbjct: 887 RVLNGYSLQHKLLLTGTPLQNNLEELFHLLNFLTPERFHN----LEGFLEEFADIAKEDQ 942
Query: 343 VKQLHTVLSPFLLRRIKNDVEGSLLPKKELNVYVGMSSMQKKWYKQILEKDIDAVNGSNG 402
+K+LH +L P +LRR+K DV ++ K EL V V +S MQKK+YK IL ++ +A+N G
Sbjct: 943 IKKLHDMLGPHMLRRLKADVFKNMPSKTELIVRVELSPMQKKYYKYILTRNFEALNARGG 1002
Query: 403 QKESKTRLLNIVMQLRKCCNHPYLFDGAEPGPPYTTD-----EHLVYNSAXXXXXXXXXX 457
+ LLN+VM L+KCCNHPYLF A P + L+ S
Sbjct: 1003 GNQ--VSLLNVVMDLKKCCNHPYLFPVAAMEAPKMPNGMYDGSALIRASGKLLLLQKMLK 1060
Query: 458 XXXEQGSRVLIFSQMSRVLDILEDYCYFREYEYCRIDGSTAHEDRINAIDDYNAPDSKKF 517
E G RVLIFSQM+++LD+LED+ Y+Y RIDG R AID +NAP +++F
Sbjct: 1061 NLKEGGHRVLIFSQMTKMLDLLEDFLEHEGYKYERIDGGITGNMRQEAIDRFNAPGAQQF 1120
Query: 518 IFLLTTRAGGLGINLTTADIVVLYDSDWNPQADLQAMDRAHRIGQKKQVRVFRFVTDNSV 577
FLL+TRAGGLGINL TAD V++YDSDWNP D+QA RAHRIGQ K+V ++RFVT SV
Sbjct: 1121 CFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTRASV 1180
Query: 578 EEKILERATQKLKLDQLVIQQGRVTXXXXXXXXDSKEGLLSMIQHGAVDVFK 629
EE+I + A +K+ L LV++ G SK+ L +++ G ++FK
Sbjct: 1181 EERITQVAKKKMMLTHLVVRPG----LGSKTGSMSKQELDDILKFGTEELFK 1228
>CE11572 [K] KOG0384 Chromodomain-helicase DNA-binding protein
Length = 1465
Score = 378 bits (971), Expect = e-104
Identities = 217/513 (42%), Positives = 306/513 (59%), Gaps = 32/513 (6%)
Query: 140 QLRPYQIQGLNWLVALHKNQLAGILADEMGLGKTLQTIAFLGYLRYIEKKNGPFLVIAPK 199
+LR YQ++GLNW+V + ILADEMGLGKT+Q+I+ L L + GP+LV+ P
Sbjct: 404 KLRDYQLEGLNWMVYAWCKGNSSILADEMGLGKTIQSISLLASLFHRYDLAGPYLVVVPL 463
Query: 200 STLNNWLREINRWTPEVSAFILQGDKEERSKLCHDKLLA-----CDFDICVASYEIIIRE 254
ST+ W +E +W PE++ + GD R + + + + +YEI++++
Sbjct: 464 STMAAWQKEFAQWAPEMNLVVYMGDVVSRDMIRQYEWFVGGTKKMKINAILTTYEILLKD 523
Query: 255 KASFKKIDWEYVVIDEAHRIKNEESMLSQVLREFSSRNRLLITGTPLQNNLHELWALLNF 314
KA IDW +++DEAHR+KN+ES+L + L +F ++LLITGTPLQN+L ELWALL+F
Sbjct: 524 KAFLSSIDWAALLVDEAHRLKNDESLLYKSLTQFRFNHKLLITGTPLQNSLKELWALLHF 583
Query: 315 LLPDIFADSATXXXXXXXXXXXXXXXXVVKQLHTVLSPFLLRRIKNDVEGSLLPKKELNV 374
++P+ F + LH L PFLLRR+K DVE SL PK E +
Sbjct: 584 IMPEKF-----DCWEEFETAHNESNHKGISALHKKLEPFLLRRVKKDVEKSLPPKTEQIL 638
Query: 375 YVGMSSMQKKWYKQILEKDIDAVNGSNGQKESKTRLLNIVMQLRKCCNHP-------YLF 427
V M++ QK++YK IL K+ + S G K S +N+VM+L+KCCNH +++
Sbjct: 639 RVDMTAHQKQFYKWILTKNYREL--SKGVKGSINGFVNLVMELKKCCNHASLTRQYDHIY 696
Query: 428 DGAEPGPPYTTDEHLVYNSAXXXXXXXXXXXXXEQGSRVLIFSQMSRVLDILEDYCYFRE 487
D A+ + L+ +S ++G RVLIFSQM +LDIL++Y R
Sbjct: 697 DDAQGRL-----QQLLKSSGKLILLDKLLCRLKDKGHRVLIFSQMVMMLDILQEYLQLRR 751
Query: 488 YEYCRIDGSTAHEDRINAIDDYNAPDSKKFIFLLTTRAGGLGINLTTADIVVLYDSDWNP 547
+ R+DGS + R A+D YNAP S F FLL+TRAGGLGINL TAD V+++DSDWNP
Sbjct: 752 FPSQRLDGSMRADLRKQALDHYNAPGSTDFAFLLSTRAGGLGINLATADTVIIFDSDWNP 811
Query: 548 QADLQAMDRAHRIGQKKQVRVFRFVTDNSVEEKILERATQKLKLDQLVIQQ----GRVTX 603
Q DLQAM RAHRIGQ K V ++R VT SVEE+I+ERA +KL LD LVIQ+ G+
Sbjct: 812 QNDLQAMSRAHRIGQTKTVNIYRLVTKGSVEEEIVERAKRKLVLDHLVIQRMDTTGKTVL 871
Query: 604 XXXXXXXDS----KEGLLSMIQHGAVDVFKSND 632
S K+ L ++++ GAV++FK +
Sbjct: 872 SKNATASGSVPFDKQELSAILKFGAVELFKEKE 904
>Hs21914927 [K] KOG0385 Chromatin remodeling complex WSTF-ISWI small subunit
Length = 838
Score = 376 bits (965), Expect = e-103
Identities = 215/542 (39%), Positives = 309/542 (56%), Gaps = 77/542 (14%)
Query: 130 FRESPAYVNGQLRPYQIQGLNWLVALHKNQLAGILADEMGLGKTLQTIAFLGYLRYIEKK 189
F++ + G +R YQ++G+ WL L +N + GILADEMGLGKT+Q IA + L
Sbjct: 212 FQQPKHFTGGVMRWYQVEGMEWLRMLWENGINGILADEMGLGKTVQCIATIA-LMIQRGV 270
Query: 190 NGPFLVIAPKSTLNNWLREINRWTPEVSAFILQGDKEERSKLCHD----KLLACDFDICV 245
GPFLV P STL NW+ E R+TP++ + G +EER KL + K + +
Sbjct: 271 PGPFLVCGPLSTLPNWMAEFKRFTPDIPTMLYHGTQEERQKLVRNIYKRKGTLQIHPVVI 330
Query: 246 ASYEIIIREKASFKKIDWEYVVIDEAHRIKNEESMLSQVLREFSSRNRLLITGTPLQNNL 305
S+EI +R++ + + W+Y+++DE HRIKN + L + L+ F++ N+LL+TGTPLQNNL
Sbjct: 331 TSFEIAMRDRNALQHCYWKYLIVDEGHRIKNMKCRLIRELKRFNADNKLLLTGTPLQNNL 390
Query: 306 HELWALLNFLLPDIFADSATXXXXXXXXXXXXXXXXVVKQ---------LHTVLSPFLLR 356
ELW+LLNFLLPD+F D + ++ + LH +L+PFLLR
Sbjct: 391 SELWSLLNFLLPDVFDDLKSFESWFDITSLSETAEDIIAKEREQNVLHMLHQILTPFLLR 450
Query: 357 RIKNDVEGSLLPKKELNVYVGMSSMQKKWYKQILEKDIDAVNGSN----------GQKES 406
R+K+DV + PK+E+ VY +S Q+ +Y I+ + I + GS+ G+ +
Sbjct: 451 RLKSDVALEVPPKREVVVYAPLSKKQEIFYTAIVNRTIANMFGSSEKETIELSPTGRPKR 510
Query: 407 KTR----------------------------------------------LLNIVMQLRKC 420
+TR L NI+M LRKC
Sbjct: 511 RTRKSINYSKIDDFPNELEKLISQIQPEVDRERAVVEVNIPVESEVNLKLQNIMMLLRKC 570
Query: 421 CNHPYLFDGAEPGPPYT----TDEHLVYNSAXXXXXXXXXXXXXEQGSRVLIFSQMSRVL 476
CNHPYL + P P T DE LV NS ++G +VL+FSQM+ +L
Sbjct: 571 CNHPYLIE--YPIDPVTQEFKIDEELVTNSGKFLILDRMLPELKKRGHKVLLFSQMTSML 628
Query: 477 DILEDYCYFREYEYCRIDGSTAHEDRINAIDDYNAPDSKKFIFLLTTRAGGLGINLTTAD 536
DIL DYC+ R++ + R+DGS ++ +R + +N D + FIFL++TRAGGLGINLT AD
Sbjct: 629 DILMDYCHLRDFNFSRLDGSMSYSEREKNMHSFNT-DPEVFIFLVSTRAGGLGINLTAAD 687
Query: 537 IVVLYDSDWNPQADLQAMDRAHRIGQKKQVRVFRFVTDNSVEEKILERATQKLKLDQLVI 596
V++YDSDWNPQ+DLQA DR HRIGQ K V V+R VT N++++KI+ERA K KL++L+I
Sbjct: 688 TVIIYDSDWNPQSDLQAQDRCHRIGQTKPVVVYRLVTANTIDQKIVERAAAKRKLEKLII 747
Query: 597 QQ 598
+
Sbjct: 748 HK 749
>Hs4557451 [R] KOG0383 Predicted helicase
Length = 1944
Score = 372 bits (954), Expect = e-102
Identities = 221/535 (41%), Positives = 303/535 (56%), Gaps = 37/535 (6%)
Query: 125 DVDFQFRESPAYVN---GQLRPYQIQGLNWLVALHKNQLAGILADEMGLGKTLQTIAFLG 181
D ++ P ++ G L YQ++GLNWL ILADEMGLGKT+QTI FL
Sbjct: 717 DPTVKYETQPRFITATGGTLHMYQLEGLNWLRFSWAQGTDTILADEMGLGKTIQTIVFLY 776
Query: 182 YLRYIEKKNGPFLVIAPKSTLNNWLREINRWTPEVSAFILQGDKEERSKLCHDKLLACD- 240
L GPFLV AP ST+ NW RE W P+ GDK+ R+ + ++ D
Sbjct: 777 SLYKEGHTKGPFLVSAPLSTIINWEREFQMWAPKFYVVTYTGDKDSRAIIRENEFSFEDN 836
Query: 241 ------------------FDICVASYEIIIREKASFKKIDWEYVVIDEAHRIKNEESMLS 282
F + + SYE+I ++A+ I W +V+DEAHR+KN +S
Sbjct: 837 AIKGGKKAFKMKREAQVKFHVLLTSYELITIDQAALGSIRWACLVVDEAHRLKNNQSKFF 896
Query: 283 QVLREFSSRNRLLITGTPLQNNLHELWALLNFLLPDIFADSATXXXXXXXXXXXXXXXXV 342
+VL + ++LL+TGTPLQNNL EL+ LLNFL P+ F +
Sbjct: 897 RVLNGYKIDHKLLLTGTPLQNNLEELFHLLNFLTPERFNN----LEGFLEEFADISKEDQ 952
Query: 343 VKQLHTVLSPFLLRRIKNDVEGSLLPKKELNVYVGMSSMQKKWYKQILEKDIDAVNGSNG 402
+K+LH +L P +LRR+K DV ++ K EL V V +S MQKK+YK IL ++ +A+N G
Sbjct: 953 IKKLHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKYILTRNFEALNSRGG 1012
Query: 403 QKESKTRLLNIVMQLRKCCNHPYLFDGA---EPGPPYTTDEH--LVYNSAXXXXXXXXXX 457
+ LLNI+M L+KCCNHPYLF A P P E L+ +S
Sbjct: 1013 GNQ--VSLLNIMMDLKKCCNHPYLFPVAAMESPKLPSGAYEGGALIKSSGKLMLLQKMLR 1070
Query: 458 XXXEQGSRVLIFSQMSRVLDILEDYCYFREYEYCRIDGSTAHEDRINAIDDYNAPDSKKF 517
EQG RVLIFSQM+++LD+LED+ + Y+Y RIDG R AID +NAP +++F
Sbjct: 1071 KLKEQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGITGALRQEAIDRFNAPGAQQF 1130
Query: 518 IFLLTTRAGGLGINLTTADIVVLYDSDWNPQADLQAMDRAHRIGQKKQVRVFRFVTDNSV 577
FLL+TRAGGLGINL TAD V+++DSDWNP D+QA RAHRIGQ +V ++RFVT SV
Sbjct: 1131 CFLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRASV 1190
Query: 578 EEKILERATQKLKLDQLVIQQGRVTXXXXXXXXDSKEGLLSMIQHGAVDVFKSND 632
EE+I + A +K+ L LV++ G SK+ L +++ G ++FK +
Sbjct: 1191 EERITQVAKRKMMLTHLVVRPG----LGSKAGSMSKQELDDILKFGTEELFKDEN 1241
>7293795 [R] KOG0383 Predicted helicase
Length = 883
Score = 372 bits (954), Expect = e-102
Identities = 220/535 (41%), Positives = 301/535 (56%), Gaps = 34/535 (6%)
Query: 125 DVDFQFRESPAYVNG---QLRPYQIQGLNWLVALHKNQLAGILADEMGLGKTLQTIAFLG 181
D++ ++ + P ++ +L P+QI+G++WL + ILADEMGLGKT+QT+ FL
Sbjct: 248 DLNKKYEDQPVFLKEAGLKLHPFQIEGVSWLRYSWGQGIPTILADEMGLGKTIQTVVFLY 307
Query: 182 YLRYIEKKNGPFLVIAPKSTLNNWLREINRWTPEVSAFILQGDKEERS------------ 229
L GPFL+ P STL NW RE+ W PE+ G K R+
Sbjct: 308 SLFKEGHCRGPFLISVPLSTLTNWERELELWAPELYCVTYVGGKTARAVIRKHEISFEEV 367
Query: 230 --KLCHDKLLACDFDICVASYEIIIREKASFKKIDWEYVVIDEAHRIKNEESMLSQVLRE 287
K + F++ + SYE I + A IDW +V+DEAHR+++ +S ++L +
Sbjct: 368 TTKTMRENQTQYKFNVMLTSYEFISVDAAFLGCIDWAALVVDEAHRLRSNQSKFFRILSK 427
Query: 288 FSSRNRLLITGTPLQNNLHELWALLNFLLPDIFADSATXXXXXXXXXXXXXXXXVVKQLH 347
+ +LL+TGTPLQNNL EL+ LLNFL F D T VK+LH
Sbjct: 428 YRIGYKLLLTGTPLQNNLEELFHLLNFLSSGKFNDLQTFQAEFTDVSKEEQ----VKRLH 483
Query: 348 TVLSPFLLRRIKNDVEGSLLPKKELNVYVGMSSMQKKWYKQILEKDIDAVNGSNGQKESK 407
+L P +LRR+K DV S+ PK E V V +SSMQKK+YK IL K+ A+N G +
Sbjct: 484 EILEPHMLRRLKADVLKSMPPKSEFIVRVELSSMQKKFYKHILTKNFKALNQKGGGRVCS 543
Query: 408 TRLLNIVMQLRKCCNHPYLFDGA------EPGPPYTTDEHLVYNSAXXXXXXXXXXXXXE 461
LLNI+M LRKCCNHPYLF A P Y L S
Sbjct: 544 --LLNIMMDLRKCCNHPYLFPSAAEEATISPSGLYEMSS-LTKASGKLDLLSKMLKQLKA 600
Query: 462 QGSRVLIFSQMSRVLDILEDYCYFREYEYCRIDGSTAHEDRINAIDDYNAPDSKKFIFLL 521
RVL+FSQM+++L++LE + Y+Y RIDGS + R AID +N P S+ F+FLL
Sbjct: 601 DNHRVLLFSQMTKMLNVLEHFLEGEGYQYDRIDGSIKGDLRQKAIDRFNDPVSEHFVFLL 660
Query: 522 TTRAGGLGINLTTADIVVLYDSDWNPQADLQAMDRAHRIGQKKQVRVFRFVTDNSVEEKI 581
+TRAGGLGINL TAD V+++DSDWNP D+QA RAHR+GQKK+V ++RFVT NSVEE+I
Sbjct: 661 STRAGGLGINLATADTVIIFDSDWNPHNDVQAFSRAHRMGQKKKVMIYRFVTHNSVEERI 720
Query: 582 LERATQKLKLDQLVIQQGRVTXXXXXXXXDSKEGLLSMIQHGAVDVFKSNDSSAM 636
++ A K+ L LV++ G SK+ L +++ G D+FK S A+
Sbjct: 721 MQVAKHKMMLTHLVVRPG----MGGMTTNFSKDELEDILRFGTEDLFKDGKSEAI 771
>Hs21362042 [K] KOG0384 Chromodomain-helicase DNA-binding protein
Length = 2713
Score = 365 bits (936), Expect = e-100
Identities = 206/493 (41%), Positives = 292/493 (58%), Gaps = 31/493 (6%)
Query: 129 QFRESPAYVNG-QLRPYQIQGLNWLVALHKNQLAGILADEMGLGKTLQTIAFLGYLRYIE 187
+ +S Y N QLR YQ++G+NWL+ N+ ILADEMGLGKT+Q+I FL + ++
Sbjct: 446 KLEKSREYKNSNQLREYQLEGMNWLLFNWYNRKNCILADEMGLGKTIQSITFLSEI-FLR 504
Query: 188 KKNGPFLVIAPKSTLNNWLREINRWTPEVSAFILQGDKEERSKLCHDKLLACD------- 240
+GPFL+IAP ST+ NW RE WT E++A + G + R + +++ D
Sbjct: 505 GIHGPFLIIAPLSTITNWEREFRTWT-EMNAIVYHGSQISRQMIQQYEMVYRDAQGNPLS 563
Query: 241 ----FDICVASYEIIIREKASFKKIDWEYVVIDEAHRIKNEESMLSQVLREFSSRNRLLI 296
F + + ++E+I+ + KKI W V+IDEAHR+KN L + L+ + +++L+
Sbjct: 564 GVFKFHVVITTFEMILADCPELKKIHWSCVIIDEAHRLKNRNCKLLEGLKLMALEHKVLL 623
Query: 297 TGTPLQNNLHELWALLNFLLPDIFADSATXXXXXXXXXXXXXXXXVVKQLHTVLSPFLLR 356
TGTPLQN++ EL++LLNFL P F VK+L ++L P +LR
Sbjct: 624 TGTPLQNSVEELFSLLNFLEPSQFPSETAFLEEFGDLKTEEQ----VKKLQSILKPMMLR 679
Query: 357 RIKNDVEGSLLPKKELNVYVGMSSMQKKWYKQILEKDIDAVNGSNGQKESKTRLLNIVMQ 416
R+K+DVE +L PK+E + V ++++QKK+Y+ ILEK+ + Q + L+N +M+
Sbjct: 680 RLKDDVEKNLAPKQETIIEVELTNIQKKYYRAILEKNFSFLTKGANQ-HNMPNLINTMME 738
Query: 417 LRKCCNHPYLFDGAE------------PGPPYTTDEHLVYNSAXXXXXXXXXXXXXEQGS 464
LRKCCNHPYL +GAE P P + ++ + G
Sbjct: 739 LRKCCNHPYLINGAEEKILEDFRKTHSPDAPDFQLQAMIQAAGKLVLIDKLLPKLIAGGH 798
Query: 465 RVLIFSQMSRVLDILEDYCYFREYEYCRIDGSTAHEDRINAIDDYNAPDSKKFIFLLTTR 524
+VLIFSQM R LDILEDY R Y Y RIDG R AID + PDS +F+FLL TR
Sbjct: 799 KVLIFSQMVRCLDILEDYLIQRRYTYERIDGRVRGNLRQAAIDRFCKPDSDRFVFLLCTR 858
Query: 525 AGGLGINLTTADIVVLYDSDWNPQADLQAMDRAHRIGQKKQVRVFRFVTDNSVEEKILER 584
AGGLGINLT AD +++DSDWNPQ DLQA R HRIGQ K V+V+R +T NS E ++ ++
Sbjct: 859 AGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKVYRLITRNSYEREMFDK 918
Query: 585 ATQKLKLDQLVIQ 597
A+ KL LD+ V+Q
Sbjct: 919 ASLKLGLDKAVLQ 931
>Hs22047966 [K] KOG0384 Chromodomain-helicase DNA-binding protein
Length = 1953
Score = 359 bits (921), Expect = 1e-98
Identities = 214/521 (41%), Positives = 300/521 (57%), Gaps = 39/521 (7%)
Query: 140 QLRPYQIQGLNWLVALHKNQLAGILADEMGLGKTLQTIAFLGYLRYIEKKNGPFLVIAPK 199
QLR YQ++G+NWL+ N+ ILADEMGLGKT+Q+IAFL + Y +GPFLVIAP
Sbjct: 182 QLREYQLEGVNWLLFNWYNRQNCILADEMGLGKTIQSIAFLQEV-YNVGIHGPFLVIAPL 240
Query: 200 STLNNWLREINRWTPEVSAFILQGDKEERSKL------CHD---KLL--ACDFDICVASY 248
ST+ NW RE N WT E++ + G R + C D +L+ A FD + ++
Sbjct: 241 STITNWEREFNTWT-EMNTIVYHGSLASRQMIQQYEMYCKDSRGRLIPGAYKFDALITTF 299
Query: 249 EIIIREKASFKKIDWEYVVIDEAHRIKNEESMLSQVLREFSSRNRLLITGTPLQNNLHEL 308
E+I+ + ++I+W V+IDEAHR+KN L L+ +++L+TGTPLQN + EL
Sbjct: 300 EMILSDCPELREIEWRCVIIDEAHRLKNRNCKLLDSLKHMDLEHKVLLTGTPLQNTVEEL 359
Query: 309 WALLNFLLPDIFADSATXXXXXXXXXXXXXXXXVVKQLHTVLSPFLLRRIKNDVEGSLLP 368
++LL+FL P F + V++L +L P +LRR+K DVE +L P
Sbjct: 360 FSLLHFLEPSQFPSESEFLKDFGDLKTEEQ----VQKLQAILKPMMLRRLKEDVEKNLAP 415
Query: 369 KKELNVYVGMSSMQKKWYKQILEKDIDAVNGSNGQKESKTRLLNIVMQLRKCCNHPYLFD 428
K+E + V ++++QKK+Y+ ILEK+ ++ G + LLN +M+LRKCCNHPYL +
Sbjct: 416 KQETIIEVELTNIQKKYYRAILEKNFSFLSKGAGH-TNMPNLLNTMMELRKCCNHPYLIN 474
Query: 429 GAEPG------------PPYTTDEHLVYNSAXXXXXXXXXXXXXEQGSRVLIFSQMSRVL 476
GAE P + +V ++ G +VLIFSQM R L
Sbjct: 475 GAEEKILTEFREACHIIPHDFHLQAMVRSAGKLVLIDKLLPKLKAGGHKVLIFSQMVRCL 534
Query: 477 DILEDYCYFREYEYCRIDGSTAHEDRINAIDDYNAPDSKKFIFLLTTRAGGLGINLTTAD 536
DILEDY R Y Y RIDG R AID ++ PDS +F+FLL TRAGGLGINLT AD
Sbjct: 535 DILEDYLIQRRYLYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTAAD 594
Query: 537 IVVLYDSDWNPQADLQAMDRAHRIGQKKQVRVFRFVTDNSVEEKILERATQKLKLDQLVI 596
+++DSDWNPQ DLQA R HRIGQ K V+V+R +T NS E ++ ++A+ KL LD+ V+
Sbjct: 595 TCIIFDSDWNPQNDLQAQARCHRIGQSKAVKVYRLITRNSYEREMFDKASLKLGLDKAVL 654
Query: 597 Q-----QGRVTXXXXXXXXDSKEGLLSMIQHGAVDVFKSND 632
Q G +T SK+ + +++ GA D
Sbjct: 655 QSMSGRDGNITGIQQF----SKKEIEDLLRKGAYAAIMEED 691
>Hs22047300 [K] KOG0384 Chromodomain-helicase DNA-binding protein
Length = 1970
Score = 358 bits (919), Expect = 3e-98
Identities = 210/512 (41%), Positives = 293/512 (57%), Gaps = 33/512 (6%)
Query: 138 NGQLRPYQIQGLNWLVALHKNQLAGILADEMGLGKTLQTIAFLGYLRYIEKKNGPFLVIA 197
N +LR YQ++G+NWL+ N ILADEMGLGKT+Q+I FL Y Y++ +GPFLVIA
Sbjct: 396 NNKLREYQLEGVNWLLFNWYNMRNCILADEMGLGKTIQSITFL-YEIYLKGIHGPFLVIA 454
Query: 198 PKSTLNNWLREINRWTPEVSAFILQGDKEERSKLCHDKLLACD-----------FDICVA 246
P ST+ NW RE WT E++ + G + R + ++ D F +
Sbjct: 455 PLSTIPNWEREFRTWT-ELNVVVYHGSQASRRTIQLYEMYFKDPQGRVIKGSYKFHAIIT 513
Query: 247 SYEIIIREKASFKKIDWEYVVIDEAHRIKNEESMLSQVLREFSSRNRLLITGTPLQNNLH 306
++E+I+ + + I W VVIDEAHR+KN L + L+ +++L+TGTPLQN +
Sbjct: 514 TFEMILTDCPELRNIPWRCVVIDEAHRLKNRNCKLLEGLKMMDLEHKVLLTGTPLQNTVE 573
Query: 307 ELWALLNFLLPDIFADSATXXXXXXXXXXXXXXXXVVKQLHTVLSPFLLRRIKNDVEGSL 366
EL++LL+FL P F T V++L +L P +LRR+K DVE +L
Sbjct: 574 ELFSLLHFLEPSRFPSETTFMQEFGDLKTEEQ----VQKLQAILKPMMLRRLKEDVEKNL 629
Query: 367 LPKKELNVYVGMSSMQKKWYKQILEKDIDAVNGSNGQKESKTRLLNIVMQLRKCCNHPYL 426
PK+E + V ++++QKK+Y+ ILEK+ ++ GQ + LLN +M+LRKCCNHPYL
Sbjct: 630 APKEETIIEVELTNIQKKYYRAILEKNFTFLSKGGGQ-ANVPNLLNTMMELRKCCNHPYL 688
Query: 427 FDGAE------------PGPPYTTDEHLVYNSAXXXXXXXXXXXXXEQGSRVLIFSQMSR 474
+GAE P + ++ + G RVLIFSQM R
Sbjct: 689 INGAEEKILEEFKETHNAESPDFQLQAMIQAAGKLVLIDKLLPKLKAGGHRVLIFSQMVR 748
Query: 475 VLDILEDYCYFREYEYCRIDGSTAHEDRINAIDDYNAPDSKKFIFLLTTRAGGLGINLTT 534
LDILEDY R Y Y RIDG R AID ++ PDS +F+FLL TRAGGLGINLT
Sbjct: 749 CLDILEDYLIQRRYPYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTA 808
Query: 535 ADIVVLYDSDWNPQADLQAMDRAHRIGQKKQVRVFRFVTDNSVEEKILERATQKLKLDQL 594
AD +++DSDWNPQ DLQA R HRIGQ K V+++R +T NS E ++ ++A+ KL LD+
Sbjct: 809 ADTCIIFDSDWNPQNDLQAQARCHRIGQSKSVKIYRLITRNSYEREMFDKASLKLGLDKA 868
Query: 595 VIQ--QGRVTXXXXXXXXDSKEGLLSMIQHGA 624
V+Q GR KE + +++ GA
Sbjct: 869 VLQSMSGRENATNGVQQLSKKE-IEDLLRKGA 899
>At2g25170 [R] KOG0383 Predicted helicase
Length = 1359
Score = 357 bits (917), Expect = 4e-98
Identities = 207/524 (39%), Positives = 303/524 (57%), Gaps = 41/524 (7%)
Query: 137 VNGQLRPYQIQGLNWLVALHKNQLAGILADEMGLGKTLQTIAFLGYLRYIEKKNGPFLVI 196
+ G L PYQ++GLN+L Q ILADEMGLGKT+Q+IA L L E+ P LVI
Sbjct: 269 IEGLLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIALLASL--FEENLIPHLVI 326
Query: 197 APKSTLNNWLREINRWTPEVSAFILQGDKEERSKLC-HDKLLACD--------------- 240
AP STL NW RE W P+++ + G + R+ + H+ L+ D
Sbjct: 327 APLSTLRNWEREFATWAPQMNVVMYFGTAQARAVIREHEFYLSKDQKKIKKKKSGQISSE 386
Query: 241 -------FDICVASYEIIIREKASFKKIDWEYVVIDEAHRIKNEESMLSQVLREFSSRNR 293
FD+ + SYE+I + A K I WE +++DE HR+KN++S L L ++SS +R
Sbjct: 387 SKQKRIKFDVLLTSYEMINLDSAVLKPIKWECMIVDEGHRLKNKDSKLFSSLTQYSSNHR 446
Query: 294 LLITGTPLQNNLHELWALLNFLLPDIFADSATXXXXXXXXXXXXXXXXVVKQLHTVLSPF 353
+L+TGTPLQNNL EL+ L++FL F + +LH +L+P
Sbjct: 447 ILLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQ----ISRLHKMLAPH 502
Query: 354 LLRRIKNDVEGSLLPKKELNVYVGMSSMQKKWYKQILEKDIDAVNGSNGQKESKTRLLNI 413
LLRR+K DV + PKKEL + V +SS+QK++YK I ++ + G + S L NI
Sbjct: 503 LLRRVKKDVMKDMPPKKELILRVDLSSLQKEYYKAIFTRNYQVLTKKGGAQIS---LNNI 559
Query: 414 VMQLRKCCNHPYLFDGAEPGPPYTTD--EHLVYNSAXXXXXXXXXXXXXEQGSRVLIFSQ 471
+M+LRK C HPY+ +G EP + + L+ + EQG RVLI++Q
Sbjct: 560 MMELRKVCCHPYMLEGVEPVIHDANEAFKQLLESCGKLQLLDKMMVKLKEQGHRVLIYTQ 619
Query: 472 MSRVLDILEDYCYFREYEYCRIDGSTAHEDRINAIDDYNAPDSKKFIFLLTTRAGGLGIN 531
+LD+LEDYC ++++Y RIDG +R ID +NA +S KF FLL+TRAGGLGIN
Sbjct: 620 FQHMLDLLEDYCTHKKWQYERIDGKVGGAERQIRIDRFNAKNSNKFCFLLSTRAGGLGIN 679
Query: 532 LTTADIVVLYDSDWNPQADLQAMDRAHRIGQKKQVRVFRFVTDNSVEEKILERATQKLKL 591
L TAD V++YDSDWNP ADLQAM RAHR+GQ +V ++R + ++EE++++ +K+ L
Sbjct: 680 LATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIYRLINRGTIEERMMQLTKKKMVL 739
Query: 592 DQLVIQQGRVTXXXXXXXXDSKEGLLSMIQHGAVDVFKSNDSSA 635
+ LV+ + + ++E L +I++G+ ++F S D A
Sbjct: 740 EHLVVGKLKTQNI-------NQEELDDIIRYGSKELFASEDDEA 776
>CE18196 [K] KOG0384 Chromodomain-helicase DNA-binding protein
Length = 2957
Score = 353 bits (905), Expect = 1e-96
Identities = 215/538 (39%), Positives = 307/538 (56%), Gaps = 43/538 (7%)
Query: 133 SPAYVNGQ-LRPYQIQGLNWLVALHKNQLAGILADEMGLGKTLQTIAFLGYLRYIEKKNG 191
S + NG LR YQ +G++WL+ + N ILADEMGLGKT+QTI FL + Y +G
Sbjct: 1178 SKVWKNGNSLREYQFEGVDWLLYCYYNAQNCILADEMGLGKTVQTITFLSRI-YDYGIHG 1236
Query: 192 PFLVIAPKSTLNNWLREINRWTPEVSAFILQGDKEERSKL-----------CHDKLLACD 240
PFLV+ P ST+ NW+RE WT +++A + G R L C K +
Sbjct: 1237 PFLVVVPLSTIQNWVREFETWT-DMNAIVYHGSAYAREVLQQYEVFYDKRHCGAKNWKKN 1295
Query: 241 F---DICVASYEIIIREKASFKKIDWEYVVIDEAHRIKNEE-SMLSQVLREFSSRNRLLI 296
F D + ++E ++ + KKI W VIDEAHR+KN +L L F +R+L+
Sbjct: 1296 FVKIDALITTFETVVSDVEFLKKIPWRVCVIDEAHRLKNRNCKLLVNGLLAFRMEHRVLL 1355
Query: 297 TGTPLQNNLHELWALLNFLLPDIFADSATXXXXXXXXXXXXXXXXVVKQLHTVLSPFLLR 356
TGTPLQNN+ EL++LLNFL P F +SAT V++L +L P +LR
Sbjct: 1356 TGTPLQNNIDELFSLLNFLHPQQFDNSATFLEQFGSCQTDDQ----VQKLQEILKPMMLR 1411
Query: 357 RIKNDVEGSLLPKKELNVYVGMSSMQKKWYKQILEKDIDAVNGSNGQKESKTRLLNIVMQ 416
R+K DVE SL PK+E + V +S MQKK+Y+ ILE++ + S L+N++M+
Sbjct: 1412 RLKEDVEKSLGPKEETIIEVQLSDMQKKFYRAILERNFSHLCKGT----SAPSLMNVMME 1467
Query: 417 LRKCCNHPYLFDGAEPG---------PPYTTD----EHLVYNSAXXXXXXXXXXXXXEQG 463
LRKCCNHP+L +GAE P + + + L+ S + G
Sbjct: 1468 LRKCCNHPFLINGAEEAIMNDFRLAHPDWDEETLAHKALIQASGKVVLIEKLLPKLRKDG 1527
Query: 464 SRVLIFSQMSRVLDILEDYCYFREYEYCRIDGSTAHEDRINAIDDYNAPDSKKFIFLLTT 523
+VLIFSQM +VLD+LE++ Y + RIDG+ + R AID ++ +S +F+FLL T
Sbjct: 1528 HKVLIFSQMVKVLDLLEEFLISMSYPFERIDGNVRGDLRQAAIDRFSKENSDRFVFLLCT 1587
Query: 524 RAGGLGINLTTADIVVLYDSDWNPQADLQAMDRAHRIGQKKQVRVFRFVTDNSVEEKILE 583
RAGGLGINLT AD V+++DSDWNPQ DLQA R HRIGQKK V+V+R +T N+ E ++ +
Sbjct: 1588 RAGGLGINLTAADTVIIFDSDWNPQNDLQAQARCHRIGQKKLVKVYRLITSNTYEREMFD 1647
Query: 584 RATQKLKLDQLVIQQGRVTXXXXXXXXDSKEGLLSMIQHGAVD--VFKSNDSSAMTSQ 639
+A+ KL LD+ V+Q T SK+ + +++ GA + + N+SS +
Sbjct: 1648 KASLKLGLDKAVLQS--TTALKAEGTALSKKDVEELLKKGAYGSIMDEENESSKFNEE 1703
>At2g28290 [BK] KOG0386 Chromatin remodeling complex SWI/SNF component SWI2 and
related ATPases (DNA/RNA helicase superfamily)
Length = 1339
Score = 352 bits (902), Expect = 2e-96
Identities = 209/509 (41%), Positives = 282/509 (55%), Gaps = 39/509 (7%)
Query: 137 VNGQLRPYQIQGLNWLVALHKNQLAGILADEMGLGKTLQ--------TIAFLGYLRYIEK 188
V G+LR YQ+ GL WLV+L+ N L GILADEMGLGKT+Q I+ + YL +
Sbjct: 789 VGGKLREYQMNGLRWLVSLYNNHLNGILADEMGLGKTVQMGLGKTVQVISLICYLMETKN 848
Query: 189 KNGPFLVIAPKSTLNNWLREINRWTPEVSAFILQGDKEERSKLCHDKLLACDFDICVASY 248
GPFLV+ P S L W EIN W P + + G +ER KL ++++ F++ + +Y
Sbjct: 849 DRGPFLVVVPSSVLPGWQSEINFWAPSIHKIVYCGTPDERRKLFKEQIVHQKFNVLLTTY 908
Query: 249 EIIIR--EKASFKKIDWEYVVIDEAHRIKNEESMLSQVLREFSSRNRLLITGTPLQNNLH 306
E ++ ++ KI W Y++IDE HRIKN L+ L+ + S +RLL+TGTPLQNNL
Sbjct: 909 EYLMNKHDRPKLSKIHWHYIIIDEGHRIKNASCKLNADLKHYVSSHRLLLTGTPLQNNLE 968
Query: 307 ELWALLNFLLPDIFADSA----------TXXXXXXXXXXXXXXXXVVKQLHTVLSPFLLR 356
ELWALLNFLLP+IF S ++ +LH VL PF+LR
Sbjct: 969 ELWALLNFLLPNIFNSSEDFSQWFNKPFQSNGESSALLSEEENLLIINRLHQVLRPFVLR 1028
Query: 357 RIKNDVEGSLLPKKELNVYVGMSSMQKKWYKQILEKDIDAVNGSNGQKESKTRLLNIVMQ 416
R+K+ VE L K E + S+ Y+++L K ++ GS G +S+ + N VM+
Sbjct: 1029 RLKHKVENELPEKIERLIRCEASA-----YQKLLMKRVEDNLGSIGNAKSRA-VHNSVME 1082
Query: 417 LRKCCNHPYLFDGAEPGPPYTTDEH----LVYNSAXXXXXXXXXXXXXEQGSRVLIFSQM 472
LR CNHPYL ++EH +V RVL FS M
Sbjct: 1083 LRNICNHPYL-------SQLHSEEHFLPPIVRLCGKLEMLDRMLPKLKATDHRVLFFSTM 1135
Query: 473 SRVLDILEDYCYFREYEYCRIDGSTAHEDRINAIDDYNAPDSKKFIFLLTTRAGGLGINL 532
+R+LD++EDY + Y+Y R+DG T+ DR ID +N S FIFLL+ RAGG+G+NL
Sbjct: 1136 TRLLDVMEDYLTLKGYKYLRLDGQTSGGDRGALIDGFNKSGSPFFIFLLSIRAGGVGVNL 1195
Query: 533 TTADIVVLYDSDWNPQADLQAMDRAHRIGQKKQVRVFRFVTDNSVEEKILERATQKLKLD 592
AD V+L+D+DWNPQ DLQA RAHRIGQKK V V RF T NSVEE++ A KL +
Sbjct: 1196 QAADTVILFDTDWNPQVDLQAQARAHRIGQKKDVLVLRFETVNSVEEQVRASAEHKLGVA 1255
Query: 593 QLVIQQGRVTXXXXXXXXDSKEGLLSMIQ 621
I G D KE L S+++
Sbjct: 1256 NQSITAG--FFDNNTSAEDRKEYLESLLR 1282
>At2g44980 [K] KOG0385 Chromatin remodeling complex WSTF-ISWI small subunit
Length = 861
Score = 342 bits (878), Expect = 1e-93
Identities = 199/482 (41%), Positives = 278/482 (57%), Gaps = 23/482 (4%)
Query: 137 VNGQLRPYQIQGLNWLVALHKNQLAGILA-DEMGLGKTLQTIAFLGYLRYIEKKNGPFLV 195
V L+P+Q++G++WL+ + + +L D+MGLGKTLQ I+FL YL++ + GPFLV
Sbjct: 47 VTATLKPHQVEGVSWLIQKYLLGVNVVLELDQMGLGKTLQAISFLSYLKFRQGLPGPFLV 106
Query: 196 IAPKSTLNNWLREINRWTPEVSAFILQGDKEER---SKLCHDKLLACDFDICVASYEIII 252
+ P S + W+ EINR+TP + GDK R K +D FD+ + +Y+I +
Sbjct: 107 LCPLSVTDGWVSEINRFTPNLEVLRYVGDKYCRLDMRKSMYDHGHFLPFDVLLTTYDIAL 166
Query: 253 REKASFKKIDWEYVVIDEAHRIKNEESMLSQVLRE-FSSRNRLLITGTPLQNNLHELWAL 311
++ +I W+Y +IDEA R+KN S+L VL E F RLLITGTP+QNNL ELWAL
Sbjct: 167 VDQDFLSQIPWQYAIIDEAQRLKNPNSVLYNVLLEQFLIPRRLLITGTPIQNNLTELWAL 226
Query: 312 LNFLLPDIFA---DSATXXXXXXXXXXXXXXXXVVKQLHTVLSPFLLRRIKNDV--EGSL 366
++F +P +F + K L +L F+LRR K+ + G+L
Sbjct: 227 MHFCMPLVFGTLDQFLSAFKETGDGLDVSNDKETYKSLKFILGAFMLRRTKSLLIESGNL 286
Query: 367 L--PKKELNVYVGMSSMQKKWYKQILEKDIDAVNGSNGQKESKTRLLNIVMQLRKCCNHP 424
+ P EL V V + S+QKK Y IL K++ + + + T L NIV+QLRK C+HP
Sbjct: 287 VLPPLTELTVMVPLVSLQKKIYTSILRKELPGLLELSSGGSNHTSLQNIVIQLRKACSHP 346
Query: 425 YLFDGAEPGPPYTTDEHLVYNSAXXXXXXXXXXXXXEQGSRVLIFSQMSRVLDILEDYCY 484
YLF G EP P+ EHLV S + G RVL+FSQM+ LDIL+D+
Sbjct: 347 YLFPGIEP-EPFEEGEHLVQASGKLLVLDQLLKRLHDSGHRVLLFSQMTSTLDILQDFME 405
Query: 485 FREYEYCRIDGSTAHEDRINAIDDYNAPD----------SKKFIFLLTTRAGGLGINLTT 534
R Y Y R+DGS E+R AI +++A S F+F+++TRAGG+G+NL
Sbjct: 406 LRRYSYERLDGSVRAEERFAAIKNFSAKTERGLDSEVDGSNAFVFMISTRAGGVGLNLVA 465
Query: 535 ADIVVLYDSDWNPQADLQAMDRAHRIGQKKQVRVFRFVTDNSVEEKILERATQKLKLDQL 594
AD V+ Y+ DWNPQ D QA+ RAHRIGQ V VT++SVEE IL RA +KL+L
Sbjct: 466 ADTVIFYEQDWNPQVDKQALQRAHRIGQISHVLSINLVTEHSVEEVILRRAERKLQLSHN 525
Query: 595 VI 596
V+
Sbjct: 526 VV 527
>YFR038w [K] KOG0385 Chromatin remodeling complex WSTF-ISWI small subunit
Length = 778
Score = 339 bits (870), Expect = 1e-92
Identities = 206/536 (38%), Positives = 293/536 (54%), Gaps = 77/536 (14%)
Query: 141 LRPYQIQGLNWLVALHKNQLAGILADEMGLGKTLQTIAFLGYLRYIEKKNGPFLVIAPKS 200
L+PYQ++GLNWL+ L++N L GILADEMGLGKT+Q+IA L ++ ++ K GPFLV AP S
Sbjct: 222 LKPYQLEGLNWLITLYENGLNGILADEMGLGKTVQSIALLAFIYEMDTK-GPFLVTAPLS 280
Query: 201 TLNNWLREINRWTPEVSA---FILQGDKEERSKLCHDKLLACDFDICVASYEIIIREKAS 257
TL+NW+ E ++ P++ + G KE +KL + I + SYEII+R+
Sbjct: 281 TLDNWMNEFAKFAPDLPVLKYYGTNGYKERSAKLKNFFKQHGGTGIVITSYEIILRDTDL 340
Query: 258 FKKIDWEYVVIDEAHRIKNEESMLSQVLREFSSRNRLLITGTPLQNNLHELWALLNFLLP 317
+W+++++DE HR+KN L + L++ ++ NRLL+TGTPLQNNL ELW+LLNF++P
Sbjct: 341 IMSQNWKFLIVDEGHRLKNINCRLIKELKKINTSNRLLLTGTPLQNNLAELWSLLNFIMP 400
Query: 318 DIFAD----------------SATXXXXXXXXXXXXXXXXVVKQLHTVLSPFLLRRIKND 361
DIFAD S + ++ LHT+L PFLLRR+K
Sbjct: 401 DIFADFEIFNKWFDFDSLNLGSGSNSEALNKLINDELQKNLISNLHTILKPFLLRRLKKV 460
Query: 362 VEGSLL-PKKELNVYVGMSSMQKKWYK------------QILEKDIDAVNGS-------- 400
V ++L PK+E + M+S Q+K+YK + L KD +N
Sbjct: 461 VLANILPPKREYIINCPMTSAQEKFYKAGLNGKLKKTMFKELIKDFFTLNDEYIGHVSNR 520
Query: 401 ----------NGQKESKT--------------------------RLLNIVMQLRKCCNHP 424
+G + S T +L N++MQLR+ +
Sbjct: 521 SIRDFINYKLSGNETSNTDNKINPTLLQMDKLYKKNLQMEISNKKLQNMMMQLRQIIDST 580
Query: 425 YLFDGAEPGPPYTTDEHLVYNSAXXXXXXXXXXXXXEQGSRVLIFSQMSRVLDILEDYCY 484
+LF P T E L+ S +G +VLI+SQ +LD++ED+C
Sbjct: 581 FLFYFPYLHPEDLTLETLLKTSGKLQILQKLIPPLISEGHKVLIYSQFVNMLDLIEDWCD 640
Query: 485 FREYEYCRIDGSTAHEDRINAIDDYNAPDSKKFIFLLTTRAGGLGINLTTADIVVLYDSD 544
+ RIDGS +E R + ++ +N+ K IFLL+TRA GLGINL AD VVL+DSD
Sbjct: 641 LNSFATFRIDGSVNNETRKDQLEKFNSSKDKHNIFLLSTRAAGLGINLVGADTVVLFDSD 700
Query: 545 WNPQADLQAMDRAHRIGQKKQVRVFRFVTDNSVEEKILERATQKLKLDQLVIQQGR 600
WNPQ DLQAMDR HRIGQ+ V V+R DN++E IL RA K L+++VIQ G+
Sbjct: 701 WNPQVDLQAMDRCHRIGQESPVIVYRLCCDNTIEHVILTRAANKRNLERMVIQMGK 756
>At5g44800 [R] KOG0383 Predicted helicase
Length = 2228
Score = 330 bits (845), Expect = 1e-89
Identities = 193/476 (40%), Positives = 279/476 (58%), Gaps = 22/476 (4%)
Query: 139 GQLRPYQIQGLNWLVALHKNQLAGILADEMGLGKTLQTIAFLGYLRYIEKKNGPFLVIAP 198
G L +Q++ LNWL ILADEMGLGKT+ AFL L + P LV+ P
Sbjct: 673 GALFAHQLEALNWLRRCWHKSKNVILADEMGLGKTVSASAFLSSLYFEFGVARPCLVLVP 732
Query: 199 KSTLNNWLREINRWTPEVSAFILQGDKEERSKL------------CHDKLLACDFDICVA 246
ST+ NWL E + W P ++ G + R+ + K + F++ +
Sbjct: 733 LSTMPNWLSEFSLWAPLLNVVEYHGSAKGRAIIRDYEWHAKNSTGTTKKPTSYKFNVLLT 792
Query: 247 SYEIIIREKASFKKIDWEYVVIDEAHRIKNEESMLSQVLREFSSRNRLLITGTPLQNNLH 306
+YE+++ + + + + WE +V+DE HR+KN ES L +L FS ++R+L+TGTPLQNN+
Sbjct: 793 TYEMVLADSSHLRGVPWEVLVVDEGHRLKNSESKLFSLLNTFSFQHRVLLTGTPLQNNIG 852
Query: 307 ELWALLNFLLPDIFADSATXXXXXXXXXXXXXXXXVVKQLHTVLSPFLLRRIKNDVEGSL 366
E++ LLNFL P F ++ V++L +++P +LRR+K D ++
Sbjct: 853 EMYNLLNFLQPSSFPSLSSFEERFHDLTSAEK----VEELKKLVAPHMLRRLKKDAMQNI 908
Query: 367 LPKKELNVYVGMSSMQKKWYKQILEKDIDAVNGSNGQKESKTRLLNIVMQLRKCCNHPYL 426
PK E V V ++S+Q ++Y+ +L K+ + G+ ++ +LNIVMQLRK CNHPYL
Sbjct: 909 PPKTERMVPVELTSIQAEYYRAMLTKNYQILRNI-GKGVAQQSMLNIVMQLRKVCNHPYL 967
Query: 427 FDGAEP--GPPYTTDEHLVYNSAXXXXXXXXXXXXXEQGSRVLIFSQMSRVLDILEDYCY 484
G EP G + + SA ++G RVLIFSQM+++LDILEDY
Sbjct: 968 IPGTEPESGSLEFLHDMRIKASAKLTLLHSMLKVLHKEGHRVLIFSQMTKLLDILEDYLN 1027
Query: 485 --FREYEYCRIDGSTAHEDRINAIDDYNAPDSKKFIFLLTTRAGGLGINLTTADIVVLYD 542
F + R+DGS A DR AI +N D +F+FLL+TRA GLGINL TAD V++YD
Sbjct: 1028 IEFGPKTFERVDGSVAVADRQAAIARFNQ-DKNRFVFLLSTRACGLGINLATADTVIIYD 1086
Query: 543 SDWNPQADLQAMDRAHRIGQKKQVRVFRFVTDNSVEEKILERATQKLKLDQLVIQQ 598
SD+NP AD+QAM+RAHRIGQ K++ V+R V SVEE+IL+ A +KL LDQL + +
Sbjct: 1087 SDFNPHADIQAMNRAHRIGQSKRLLVYRLVVRASVEERILQLAKKKLMLDQLFVNK 1142
>ECU01g0350 [K] KOG0384 Chromodomain-helicase DNA-binding protein
Length = 1251
Score = 328 bits (842), Expect = 2e-89
Identities = 194/556 (34%), Positives = 302/556 (53%), Gaps = 58/556 (10%)
Query: 129 QFRESPAYVNG-QLRPYQIQGLNWLVALHKNQLAGILADEMGLGKTLQTIAFLGYLRYIE 187
++ ESP + G +LR YQ++GLNWL+ + + I+ADEMGLGKT+Q++ F+ L
Sbjct: 289 KYEESPVFKGGNRLREYQLEGLNWLLNRWYYKQSCIMADEMGLGKTVQSVTFINTLFTKY 348
Query: 188 KKNGPFLVIAPKSTLNNWLREINRWTPEVSAFILQGDKEERSKLCHDKLLACD------- 240
P LV+ P S + +W RE WT ++ ++ R+ + + +
Sbjct: 349 DYCAPVLVVTPLSIIPHWEREFEAWT-DLRVLKYHENRPGRALIAEYEFVLKKNNLEIRL 407
Query: 241 FDICVASYEIIIREKASFKKIDWEYVVIDEAHRIKNEESMLSQVLREFSSRNRLLITGTP 300
FD+ + +Y+ ++ E+ + + + DEAHR+KN +S + +LR +++L++GTP
Sbjct: 408 FDVLITTYDTVMAEQEHLSQFHFSVGIFDEAHRLKNAKSKAATILRTLKFNHKVLLSGTP 467
Query: 301 LQNNLHELWALLNFLLPDIFADSATXXXXXXXXXXXXXXXXVVKQLHTVLSPFLLRRIKN 360
LQNN+ ELW+LLNF+ P F+ V++L +L P +LRR+K
Sbjct: 468 LQNNISELWSLLNFIDPMRFSSLPHFLGEFKMENIND-----VEKLQGLLRPLMLRRMKE 522
Query: 361 DVEGSLLPKKELNVYVGMSSMQKKWYKQILEKDIDAVNGSNGQKESKTRLLNIVMQLRKC 420
DVE S+ K+E + V ++ +QK++Y+ ILEK+I+ + + G KES LLN++M+LRKC
Sbjct: 523 DVEKSIPTKEETIIEVALTMIQKRFYRAILEKNIEFL--TKGGKESAPNLLNVMMELRKC 580
Query: 421 CNHPYLFDGAE--------------------------PGPPYTTDEH------------- 441
C HPYL GAE DEH
Sbjct: 581 CIHPYLIKGAEEQILSGYLKKKRERSKAEGAENDITLTSEVLNEDEHQDGNSVISDIDEY 640
Query: 442 --LVYNSAXXXXXXXXXXXXXEQGSRVLIFSQMSRVLDILEDYCYFREYEYCRIDGSTAH 499
+ S+ + G +VLIFSQM+R LD+L +Y +R+Y+Y RIDG
Sbjct: 641 YKIFIQSSGKLVLLDKLLGKLKDGHKVLIFSQMTRCLDLLAEYLAYRKYKYERIDGGART 700
Query: 500 EDRINAIDDYNAPDSKKFIFLLTTRAGGLGINLTTADIVVLYDSDWNPQADLQAMDRAHR 559
E+R AID ++ S F+FLL+TRAGG+GINLT AD V+++DSDWNPQ DLQA R HR
Sbjct: 701 ENRQAAIDRFSDKTSDVFVFLLSTRAGGVGINLTAADTVIIFDSDWNPQNDLQAQARCHR 760
Query: 560 IGQKKQVRVFRFVTDNSVEEKILERATQKLKLDQLVIQQGRVTXXXXXXXXDSKEGLLSM 619
IGQ +V+V+R VT+N+ E ++ ++A KL LD+ V+Q+ K+ + ++
Sbjct: 761 IGQTSEVKVYRLVTENTYEREMFDKAGLKLGLDRAVLQK-MTFEEQKSEKTRKKDAIETL 819
Query: 620 IQHGAVDVFKSNDSSA 635
++ GA V D ++
Sbjct: 820 LRKGAYGVLMETDDAS 835
>At2g46020 [BK] KOG0386 Chromatin remodeling complex SWI/SNF component SWI2
and related ATPases (DNA/RNA helicase superfamily)
Length = 1245
Score = 327 bits (837), Expect = 8e-89
Identities = 192/483 (39%), Positives = 274/483 (55%), Gaps = 41/483 (8%)
Query: 139 GQLRPYQIQGLNWLVALHKNQLAGILADEMGLGKTLQTIAFLGYLRYIEKKNGPFLVIAP 198
G LR YQ+ GL W+++L+ N+L GILADEMGLGKT+Q +A + YL + GP L+I P
Sbjct: 32 GTLRDYQLVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVP 91
Query: 199 KSTLNNWLREINRWTPEVSAFILQGDKEERSKLCHDKLLACDFDICVASYEIIIREKASF 258
+ L NW E++ W P VS G K++RSKL ++ F++ V +YE I+ +++
Sbjct: 92 NAVLVNWKSELHTWLPSVSCIYYVGTKDQRSKL-FSQVKFEKFNVLVTTYEFIMYDRSKL 150
Query: 259 KKIDWEYVVIDEAHRIKNEESMLSQVLREFSSRNRLLITGTPLQNNLHELWALLNFLLPD 318
K+DW+Y++IDEA R+K+ ES+L++ L + + RLL+TGTPLQN+L ELW+LLN LLPD
Sbjct: 151 SKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPD 210
Query: 319 IFAD--------------SATXXXXXXXXXXXXXXXXVVKQLHTVLSPFLLRRIKNDVEG 364
+F + V+ +LH +L PF+LRR DVEG
Sbjct: 211 VFDNRKAFHDWFAQPFQKEGPAHNIEDDWLETEKKVIVIHRLHQILEPFMLRRRVEDVEG 270
Query: 365 SLLPKKELNVYVGMSSMQKKWYKQI-------LEKDIDAVNGSNG---QKESKTRLLNIV 414
SL K + + MS++Q Y I ++ D + + Q + L N
Sbjct: 271 SLPAKVSVVLRCRMSAIQSAVYDWIKATGTLRVDPDDEKLRAQKNPIYQAKIYRTLNNRC 330
Query: 415 MQLRKCCNHPYLFDGAEPGPPYTTD---EHLVYNSAXXXXXXXXXXXXXEQGSRVLIFSQ 471
M+LRK CNHP L PY D + LV + G RVL+FS
Sbjct: 331 MELRKACNHPLL------NYPYFNDFSKDFLVRSCGKLWILDRILIKLQRTGHRVLLFST 384
Query: 472 MSRVLDILEDYCYFREYEYCRIDGSTAHEDRINAIDDYNAPDSKKFIFLLTTRAGGLGIN 531
M+++LDILE+Y +R Y RIDG+T+ EDR +AI D+N PD+ FIFLL+ RA G G+N
Sbjct: 385 MTKLLDILEEYLQWRRLVYRRIDGTTSLEDRESAIVDFNDPDTDCFIFLLSIRAAGRGLN 444
Query: 532 LTTADIVVLYDSDWNPQADLQAMDRAHRIGQKKQVRVFRFVTDNSVEEKILERATQKLKL 591
L TAD VV+YD D NP+ + QA+ RAHRIGQ ++V+V E ++E+ + K
Sbjct: 445 LQTADTVVIYDPDPNPKNEEQAVARAHRIGQTREVKVIYM-------EAVVEKLSSHQKE 497
Query: 592 DQL 594
D+L
Sbjct: 498 DEL 500
>SPBP35G2.10 [R] KOG0383 Predicted helicase
Length = 1418
Score = 320 bits (819), Expect = 1e-86
Identities = 194/526 (36%), Positives = 293/526 (54%), Gaps = 43/526 (8%)
Query: 127 DFQFRESPAYVNG-QLRPYQIQGLNWLVALHKNQLAGILADEMGLGKTLQTIAFLGYLRY 185
+ ++ P+++ G L PYQ++GLNWL ILADEMGLGKT+Q I+F+ L Y
Sbjct: 541 NLEWHSQPSFIKGGTLMPYQLKGLNWLYLRWYTHHPCILADEMGLGKTVQVISFISVLFY 600
Query: 186 IEKKNGPFLVIAPKSTLNNWLREINRWTPEVSAFILQGDKEERSKLCHDKLLACDFDICV 245
K P LVI P +T+ NW RE+ +W P + +L G ++ RS + +L+ V
Sbjct: 601 -RHKCFPVLVIVPHATVANWERELKKWAPFLQINVLVGSEKNRSLVRDYRLINQKDPKHV 659
Query: 246 ASYEIII------REKASFKKIDWEYVVIDEAHRIKNEESMLSQVLREFSSRNRLLITGT 299
+++ ++I RE + +K W+ +++DE R+KN++S L L S +LL+TGT
Sbjct: 660 STHVLVISASNVEREISLLRKFQWKVLIVDEGQRLKNDQSSLFYYLSSVKSDFKLLLTGT 719
Query: 300 PLQNNLHELWALLNFLLPDIFADSATXXXXXXXXXXXXXXXXVVKQLHTVLSPFLLRRIK 359
PLQNN+ EL+ LL FL P V +LH +L PF LRR+K
Sbjct: 720 PLQNNVRELFNLLQFLNP------MKINAAELEKRYSIIDTEKVTELHQILKPFFLRRVK 773
Query: 360 NDVEGSLLPKKELNVYVGMSSMQKKWYKQILEKDIDAV-------NGSNGQKESKTRLLN 412
++V + K E+ + + M+ +QK YK IL K++ + N S+ + T L N
Sbjct: 774 SEVLDNFPTKVEVIIPLSMTPVQKGLYKSILSKNLSLLRNITGYANTSSSGGQRTTSLNN 833
Query: 413 IVMQLRKCCNHPYLFDGAEPGPPYTTDEHLVYNSAXXXXXXXXXXXXX---------EQG 463
I+MQLRK HPY++ P D +L Y A +G
Sbjct: 834 ILMQLRKTLAHPYIYS------PDIEDRNLPYELAMRSLEEASCKFLILRLLVPKLITRG 887
Query: 464 SRVLIFSQMSRVLDILEDYCYFREYEYCRIDGSTAHEDRINAIDDYNAPDSKKFIFLLTT 523
R+L+FSQ + LDILED+ ++ Y R DG+++ +R +AID +NAP+S+ FLL+T
Sbjct: 888 HRILLFSQFIQQLDILEDWFEYKNIAYARFDGASSEMERQSAIDSFNAPNSELSCFLLST 947
Query: 524 RAGGLGINLTTADIVVLYDSDWNPQADLQAMDRAHRIGQKKQVRVFRFVTDNSVEEKILE 583
RAGG+GINL +AD V++ D D+NP D+QA+ RAHR GQKK+V VF T +SVEEKI++
Sbjct: 948 RAGGVGINLASADTVIILDPDFNPHQDMQAIARAHRYGQKKKVLVFVLTTRDSVEEKIIQ 1007
Query: 584 RATQKLKLDQLVIQQGRVTXXXXXXXXDSKEGLLSMIQHGAVDVFK 629
A +KL LD L+++ +S++ L S+++HGA +F+
Sbjct: 1008 NAQKKLVLDHLIVE-------SLDQNHNSEKDLESILRHGARALFE 1046
>Hs14149730 [B] KOG0389 SNF2 family DNA-dependent ATPase
Length = 1026
Score = 316 bits (809), Expect = 1e-85
Identities = 188/522 (36%), Positives = 278/522 (53%), Gaps = 68/522 (13%)
Query: 132 ESPAYVNGQL--RPYQIQGLNWLVALHKNQLAGILADEMGLGKTLQTIAFLGYLRYIEKK 189
E P+ +N L +PYQ GLNWL +HK+ L GILADEMGLGKT+Q IAFL YL Y E
Sbjct: 486 EQPSILNQSLSLKPYQKVGLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYL-YQEGN 544
Query: 190 NGPFLVIAPKSTLNNWLREINRWTPEVSAFILQGDKEERSKL---CHDKLLACDFDICVA 246
NGP L++ P ST++NWLRE+N W P + G +EER ++ H + D+++ V
Sbjct: 545 NGPHLIVVPASTIDNWLREVNLWCPTLKVLCYYGSQEERKQIRFNIHSRYE--DYNVIVT 602
Query: 247 SYEIIIR---EKASFKKIDWEYVVIDEAHRIKNEESMLSQVLREFSSRNRLLITGTPLQN 303
+Y I +++ F+++ Y + DE H +KN S+ Q L ++ NRLL+TGTP+QN
Sbjct: 603 TYNCAISSSDDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTINANNRLLLTGTPVQN 662
Query: 304 NLHELWALLNFLLPDIFADSATXXXXXXXXXXXXXXXXVVKQ------LHTVLSPFLLRR 357
NL EL +LLNF++P +F+ S + + + ++ PF+LRR
Sbjct: 663 NLLELMSLLNFVMPHMFSSSTSEIRRMFSSKTKSADEQSIYEKERIAHAKQIIKPFILRR 722
Query: 358 IKNDVEGSLLPKKELNVYVGMSSMQKKWYKQILEKDIDAVNGSNGQKESKTRLLNIVMQL 417
+K +V L PKK+ MS Q++ Y + + ++N E T + N++MQL
Sbjct: 723 VKEEVLKQLPPKKDRIELCAMSEKQEQLYLGLFNRLKKSIN----NLEKNTEMCNVMMQL 778
Query: 418 RKCCNHPYLF--------------------DGAEPGPP---------------------- 435
RK NHP L E P
Sbjct: 779 RKMANHPLLHRQYYTAEKLKEMSQLMLKEPTHCEANPDLIFEDMEVMTDFELHVLCKQYR 838
Query: 436 ----YTTDEHLVYNSAXXXXXXXXXXXXXEQGSRVLIFSQMSRVLDILEDYCYFREYEYC 491
+ D L+ +S ++G RV++FSQ + +LDILE ++ Y
Sbjct: 839 HINNFQLDMDLILDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYL 898
Query: 492 RIDGSTAHEDRINAIDDYNAPDSKKFIFLLTTRAGGLGINLTTADIVVLYDSDWNPQADL 551
R+DG T +RI+ ID++N D F+FLL+T+AGGLGINLT+A++V+L+D D NP D
Sbjct: 899 RLDGKTQISERIHLIDEFNT-DMDIFVFLLSTKAGGLGINLTSANVVILHDIDCNPYNDK 957
Query: 552 QAMDRAHRIGQKKQVRVFRFVTDNSVEEKILERATQKLKLDQ 593
QA DR HR+GQ K+V V + ++ ++EE +L+ QKLKL+Q
Sbjct: 958 QAEDRCHRVGQTKEVLVIKLISQGTIEESMLKINQQKLKLEQ 999
>7297570 [B] KOG0389 SNF2 family DNA-dependent ATPase
Length = 844
Score = 291 bits (744), Expect = 5e-78
Identities = 180/515 (34%), Positives = 273/515 (52%), Gaps = 66/515 (12%)
Query: 140 QLRPYQIQGLNWLVALHKNQLAGILADEMGLGKTLQTIAFLGYLRYIEKKNGPFLVIAPK 199
QL YQI GLNWL +HK ++ GILADEMGLGKT+Q IAFL YL+ L++ P
Sbjct: 288 QLADYQIIGLNWLTVMHKQEMNGILADEMGLGKTIQVIAFLAYLKENGLSQAAHLIVVPS 347
Query: 200 STLNNWLREINRWTPEVSAFILQGDKEERSKL--CHDKLLACDFDICVASYEII---IRE 254
STL+NW EI+RW PE+ G ++ER ++ K FD+ + +Y I+ E
Sbjct: 348 STLDNWEAEISRWCPELVVEKYHGSQDERRRMRGRFAKDGFTGFDVLLTTYHIVGSTPEE 407
Query: 255 KASFKKIDWEYVVIDEAHRIKNEESMLSQVLREFSSRNRLLITGTPLQNNLHELWALLNF 314
+ F+ +YV+ DEAH +KN + L ++R R+L+TGTPLQNNL EL +LL F
Sbjct: 408 RKMFRVCKLDYVIFDEAHMLKNMTTQRYANLITINARMRILLTGTPLQNNLLELISLLCF 467
Query: 315 LLPDIFADSATXXXXXXX---------XXXXXXXXXVVKQLHTVLSPFLLRRIKNDVEGS 365
++P FA S +++ ++ PF+LRR+K DV +
Sbjct: 468 VMPKFFAKSIEDIKSLFAKKGKSDGDQDEVSQFQETQIQRAKRIMKPFVLRRLKKDVLKN 527
Query: 366 LLPKKELNVYVGMSSMQKKWYKQILEKDIDAVNGSNGQ--KESKTRLLNIVMQLRKCCNH 423
L K L V MSS QK +Y ++ +D + + G+ S+ + I+M++R+ NH
Sbjct: 528 LPKKLSLVEKVPMSSQQKIYYHEL----VDYYSNNKGEVCSSSERAGIAIMMEMRRIANH 583
Query: 424 P-------------------------------YLFDGAEPGPPYTT-------------- 438
P Y+F+ +
Sbjct: 584 PLLMRHYFTDANLRGFSKRLANASSFKKTNEQYIFEELAVMSDFQVYQMMNKHEFYDVKI 643
Query: 439 DEHLVYNSAXXXXXXXXXXXXXEQGSRVLIFSQMSRVLDILEDYCYFREYEYCRIDGSTA 498
++L+ +S +G RVL+FSQ + +LDI+E+Y R++ +CR+DG+TA
Sbjct: 644 PDNLICDSGKFLYLDTLLPKLKAEGHRVLLFSQFTMMLDIVEEYLRIRKFGFCRLDGATA 703
Query: 499 HEDRINAIDDYNAPDSKKFIFLLTTRAGGLGINLTTADIVVLYDSDWNPQADLQAMDRAH 558
R + I D+N DS F+FLL+T+AGG+GINLT AD V++D D+NP D QA DR H
Sbjct: 704 VNVRQDLITDFNGDDS-IFVFLLSTKAGGVGINLTAADTCVIHDIDFNPYNDKQAEDRCH 762
Query: 559 RIGQKKQVRVFRFVTDNSVEEKILERATQKLKLDQ 593
R+GQ++ V ++R ++++++EE IL A +KLKL++
Sbjct: 763 RMGQQRPVTIYRLISESTIEEGILMAAEEKLKLEK 797
>Hs4557565 [KL] KOG0387 Transcription-coupled repair protein CSB/RAD26 (contains
SNF2 family DNA-dependent ATPase domain)
Length = 1493
Score = 276 bits (706), Expect = 1e-73
Identities = 182/552 (32%), Positives = 281/552 (49%), Gaps = 50/552 (9%)
Query: 127 DFQFRES---PAYVNGQLRPYQIQGLNWLVALHKNQLAGILADEMGLGKTLQTIAFLGYL 183
D +F E P ++ +L YQ G+ WL LH Q GIL DEMGLGKT+Q IAFL L
Sbjct: 490 DAEFDEGFKVPGFLFKKLFKYQQTGVRWLWELHCQQAGGILGDEMGLGKTIQIIAFLAGL 549
Query: 184 RYIEKKN----------GPFLVIAPKSTLNNWLREINRWTPEVSAFILQGD---KEERSK 230
Y + + GP +++ P + ++ W++E + W P IL ++ K
Sbjct: 550 SYSKIRTRGSNYRFEGLGPTVIVCPTTVMHQWVKEFHTWWPPFRVAILHETGSYTHKKEK 609
Query: 231 LCHDKLLACDFDICVASYEIIIREKASFKKIDWEYVVIDEAHRIKNEESMLSQVLREFSS 290
L D +A I + SY I + + DW YV++DE H+I+N + ++ ++F +
Sbjct: 610 LIRD--VAHCHGILITSYSYIRLMQDDISRYDWHYVILDEGHKIRNPNAAVTLACKQFRT 667
Query: 291 RNRLLITGTPLQNNLHELWALLNFLLPD------IFADSATXXXXXXXXXXXX-----XX 339
+R++++G+P+QNNL ELW+L +F+ P +F + +
Sbjct: 668 PHRIILSGSPMQNNLRELWSLFDFIFPGKLGTLPVFMEQFSVPITMGGYSNASPVQVKTA 727
Query: 340 XXVVKQLHTVLSPFLLRRIKNDVEGSL-LP-KKELNVYVGMSSMQKKWYKQILEKDIDAV 397
L ++P+LLRR+K+DV+ SL LP K E ++ ++ Q K Y+ ++ +
Sbjct: 728 YKCACVLRDTINPYLLRRMKSDVKMSLSLPDKNEQVLFCRLTDEQHKVYQNFVDSK-EVY 786
Query: 398 NGSNGQKESKTRLLNIVMQLRKCCNHPYLFDGAEPGPPYTTDEHLVYN-------SAXXX 450
NG+ + + + ++ LRK CNHP LF G D+ L + S
Sbjct: 787 RILNGEMQ----IFSGLIALRKICNHPDLFSGGPKNLKGLPDDELEEDQFGYWKRSGKMI 842
Query: 451 XXXXXXXXXXEQGSRVLIFSQMSRVLDILEDYCYFREYEYCRIDGSTAHEDRINAIDDYN 510
+QG RVL+FSQ ++LDILE + ++Y Y ++DG+T R I YN
Sbjct: 843 VVESLLKIWHKQGQRVLLFSQSRQMLDILEVFLRAQKYTYLKMDGTTTIASRQPLITRYN 902
Query: 511 APDSKKFIFLLTTRAGGLGINLTTADIVVLYDSDWNPQADLQAMDRAHRIGQKKQVRVFR 570
D+ F+FLLTTR GGLG+NLT A+ VV+YD DWNP D QA +RA RIGQKKQV V+R
Sbjct: 903 E-DTSIFVFLLTTRVGGLGVNLTGANRVVIYDPDWNPSTDTQARERAWRIGQKKQVTVYR 961
Query: 571 FVTDNSVEEKILERATQKLKLDQLVIQQGRVTXXXXXXXXDSKEGLLSMIQHGAVDVFKS 630
+T ++EEKI R K L V++ + L + + D +S
Sbjct: 962 LLTAGTIEEKIYHRQIFKQFLTNRVLKDPKQRRFF------KSNDLYELFTLTSPDASQS 1015
Query: 631 NDSSAMTSQTGT 642
++SA+ + TG+
Sbjct: 1016 TETSAIFAGTGS 1027
>YPL082c [K] KOG0392 SNF2 family DNA-dependent ATPase domain-containing
protein
Length = 1867
Score = 271 bits (692), Expect = 5e-72
Identities = 185/570 (32%), Positives = 266/570 (46%), Gaps = 90/570 (15%)
Query: 134 PAYVNGQLRPYQIQGLNWLVALHKNQLAGILADEMGLGKTLQTIAFLGYLRYIEKKNG-- 191
P + LR YQ G+NWL L+K L GIL D+MGLGKTLQTI + +Y+ K++
Sbjct: 1265 PIAIKATLRKYQQDGVNWLAFLNKYHLHGILCDDMGLGKTLQTICIIASDQYLRKEDYEK 1324
Query: 192 ---------PFLVIAPKSTLNNWLREINRWTPEVSAFILQGDKEERSKLCHDKLLACDFD 242
P L+I P S +W E +++ P + + G R L + D D
Sbjct: 1325 TRSVESRALPSLIICPPSLTGHWENEFDQYAPFLKVVVYAGGPTVRLTL---RPQLSDAD 1381
Query: 243 ICVASYEIIIREKASFKKIDWEYVVIDEAHRIKNEESMLSQVLREFSSRNRLLITGTPLQ 302
I V SY++ + A K ++ Y V+DE H IKN +S L++ ++E ++ +RL++TGTP+Q
Sbjct: 1382 IIVTSYDVARNDLAVLNKTEYNYCVLDEGHIIKNSQSKLAKAVKEITANHRLILTGTPIQ 1441
Query: 303 NNLHELWALLNFLLPDIFADS-----------ATXXXXXXXXXXXXXXXXVVKQLHTVLS 351
NN+ ELW+L +FL+P A ++ LH +
Sbjct: 1442 NNVLELWSLFDFLMPGFLGTEKMFQERFAKPIAASRNSKTSSKEQEAGVLALEALHKQVL 1501
Query: 352 PFLLRRIKNDVEGSLLPKKELNVYVGMSSMQKKWY-------KQILEKDIDAVNGSNGQK 404
PF+LRR+K DV L PK + Y + +QK+ Y K ++EKDI+ ++G
Sbjct: 1502 PFMLRRLKEDVLSDLPPKIIQDYYCELGDLQKQLYMDFTKKQKNVVEKDIENSEIADG-- 1559
Query: 405 ESKTRLLNIVMQLRKCCNHPYLFDGAEPGPPYTT-----------DEHLVYNSAXXXXXX 453
K + + +RK CNHP L P P D H + N+
Sbjct: 1560 --KQHIFQALQYMRKLCNHPALV--LSPNHPQLAQVQDYLKQTGLDLHDIINAPKLSALR 1615
Query: 454 X------------XXXXXXEQG---------SRVLIFSQMSRVLDILEDYC---YFREYE 489
+Q R LIF Q+ +LD++E+ Y
Sbjct: 1616 TLLFECGIGEEDIDKKASQDQNFPIQNVISQHRALIFCQLKDMLDMVENDLFKKYMPSVT 1675
Query: 490 YCRIDGSTAHEDRINAIDDYNAPDSKKFIFLLTTRAGGLGINLTTADIVVLYDSDWNPQA 549
Y R+DGS DR + +N D LLTT+ GGLG+NLT AD V+ + DWNP
Sbjct: 1676 YMRLDGSIDPRDRQKVVRKFN-EDPSIDCLLLTTKVGGLGLNLTGADTVIFVEHDWNPMN 1734
Query: 550 DLQAMDRAHRIGQKKQVRVFRFVTDNSVEEKILERATQKLKLDQLVIQQGRVTXXXXXXX 609
DLQAMDRAHRIGQKK V V+R +T ++EEKI+ K+ + V+ Q
Sbjct: 1735 DLQAMDRAHRIGQKKVVNVYRIITKGTLEEKIMGLQKFKMNIASTVVNQ----------- 1783
Query: 610 XDSKEGLLSMIQHGAVDVFKSNDSSAMTSQ 639
GL SM H +D+F D +TSQ
Sbjct: 1784 --QNSGLASMDTHQLLDLF---DPDNVTSQ 1808
>SPBC1826.01c [K] KOG0392 SNF2 family DNA-dependent ATPase domain-containing
protein
Length = 635
Score = 265 bits (676), Expect = 4e-70
Identities = 171/529 (32%), Positives = 255/529 (47%), Gaps = 70/529 (13%)
Query: 134 PAYVNGQLRPYQIQGLNWLVALHKNQLAGILADEMGLGKTLQTIAFLGYLRYIEKK---- 189
P ++ LR YQ +G+NWL L+K +L GIL D+MGLGKTLQTI + Y +K
Sbjct: 33 PVPISADLRKYQQEGVNWLAFLNKYELHGILCDDMGLGKTLQTICIVASDHYNRQKLFEE 92
Query: 190 -------NGPFLVIAPKSTLNNWLREINRWTP--EVSAFILQGDKEERSKLCHDKLLACD 240
+ P L++ P + +W +E++ + P +VSA++ G ER+K+ K+ D
Sbjct: 93 SGSPKFAHVPSLIVCPSTLAGHWQQELSTYAPFLKVSAYV--GPPAERAKI-RSKMKKSD 149
Query: 241 FDICVASYEIIIREKASFKKIDWEYVVIDEAHRIKNEESMLSQVLREFSSRNRLLITGTP 300
+ V SY+I + KIDW Y V+DE H IKN + L++ ++ S +RL+++GTP
Sbjct: 150 --VVVTSYDICRNDVDELVKIDWNYCVLDEGHVIKNARAKLTKAVKSLRSYHRLILSGTP 207
Query: 301 LQNNLHELWALLNFLLPDIFADS-----------ATXXXXXXXXXXXXXXXXVVKQLHTV 349
+QNN+ ELW+L +FL+P A ++ +H
Sbjct: 208 IQNNVLELWSLFDFLMPGFLGTEKTFQERFVRPIAASRDAKSSSKERERGTLALEAIHKQ 267
Query: 350 LSPFLLRRIKNDVEGSLLPKKELNVYVGMSSMQKKWY----------KQILEKDIDAVNG 399
+ PF+LRR+K DV L PK + Y MS +Q+K +++ + + + G
Sbjct: 268 VLPFMLRRLKEDVLADLPPKIIQDYYCDMSDLQRKLLNDFVSQLNINEELEDDETEKTQG 327
Query: 400 SNGQKESKTRLLNIVMQLRKCCNHPYL----------------------FDGAEPGPPYT 437
+ +K K + + +RK CNHP L + P T
Sbjct: 328 TRKKKSQKAHIFQALQYMRKLCNHPALILTEKHPKRNAIVKQLAKENSGLHDLKHAPKLT 387
Query: 438 TDEHLVY-----NSAXXXXXXXXXXXXXEQGSRVLIFSQMSRVLDILED---YCYFREYE 489
L+ NS+ RVLIF Q+ +LD++E +
Sbjct: 388 ALGQLLRDCGLGNSSVNSNGIDSALTNAVSEHRVLIFCQLKDMLDMVEKDLLQATMPDVT 447
Query: 490 YCRIDGSTAHEDRINAIDDYNAPDSKKFIFLLTTRAGGLGINLTTADIVVLYDSDWNPQA 549
Y R+DGS R A+ +N D + LLTT GGLG+NLT AD V+ + DWNP
Sbjct: 448 YMRLDGSVEPTKRQEAVTKFN-NDPSIDVLLLTTHVGGLGLNLTGADTVIFVEHDWNPMR 506
Query: 550 DLQAMDRAHRIGQKKQVRVFRFVTDNSVEEKILERATQKLKLDQLVIQQ 598
DLQAMDRAHRIGQKK V V+R +T +EEKI+ K+ + V+ Q
Sbjct: 507 DLQAMDRAHRIGQKKVVNVYRLITRGCLEEKIMGLQRFKMNVASTVVNQ 555
>At2g02090 [B] KOG0389 SNF2 family DNA-dependent ATPase
Length = 763
Score = 263 bits (672), Expect = 1e-69
Identities = 186/551 (33%), Positives = 265/551 (47%), Gaps = 84/551 (15%)
Query: 125 DVDFQFRESPAYVNGQLRPYQIQGLNWLVALHKNQLAG-ILADEMGLGKTLQTIAFLGYL 183
D+D + + L+PYQ+ G+N+L+ L+K + G ILADEMGLGKT+Q I +L L
Sbjct: 197 DIDDACKAEDSDFQPILKPYQLVGVNFLLLLYKKGIEGAILADEMGLGKTIQAITYLTLL 256
Query: 184 RYIEKKNGPFLVIAPKSTLNNWLREINRWTPEVSAFILQGDKEERSKLCHDKLLACD--- 240
+ GP LV+ P S L NW RE+ +W P + G + L
Sbjct: 257 SRLNNDPGPHLVVCPASVLENWERELRKWCPSFTVLQYHGAARAAYSRELNSLSKAGKPP 316
Query: 241 -FDICVASYEIIIR-------EKASFKKIDWEYVVIDEAHRIKNEESM----LSQVLREF 288
F++ + Y + R ++ K+ W V++DEAH +K++ S L V R
Sbjct: 317 PFNVLLVCYSLFERHSEQQKDDRKVLKRWRWSCVLMDEAHALKDKNSYRWKNLMSVAR-- 374
Query: 289 SSRNRLLITGTPLQNNLHELWALLNFLLPDIFADSATXXXXXXXXXXXXXXXXVVKQLHT 348
++ RL++TGTPLQN+LHELW+LL F+LPDIF T ++ ++ +
Sbjct: 375 NANQRLMLTGTPLQNDLHELWSLLEFMLPDIF----TTENVDLKKLLNAEDTELITRMKS 430
Query: 349 VLSPFLLRRIKNDVEGSLLPKKELNVYVGMSSMQKKWYKQILEKDIDAVNGSNGQKESKT 408
+L PF+LRR+K+DV L+PK + YV M Q+ YK+ +E+ A + SK+
Sbjct: 431 ILGPFILRRLKSDVMQQLVPKIQRVEYVLMERKQEDAYKEAIEEYRAASQARLVKLSSKS 490
Query: 409 -----------RLLNIVMQLRKCCN----------------------------------- 422
++ N Q RK N
Sbjct: 491 LNSLAKALPKRQISNYFTQFRKIANHPLLIRRIYSDEDVIRIARKLHPIGAFGFECSLDR 550
Query: 423 -------------HPYLFD-GAEPGPPYTTDEHLVYNSAXXXXXXXXXXXXXEQGSRVLI 468
H LF G +D+H++ SA + G RVLI
Sbjct: 551 VIEEVKGFNDFRIHQLLFQYGVNDTKGTLSDKHVML-SAKCRTLAELLPSMKKSGHRVLI 609
Query: 469 FSQMSRVLDILEDYCYFREYEYCRIDGSTAHEDRINAIDDYNAPDSKKFIFLLTTRAGGL 528
FSQ + +LDILE Y R+DGST DR +D +N D F LL+TRAGG
Sbjct: 610 FSQWTSMLDILEWTLDVIGVTYRRLDGSTQVTDRQTIVDTFNN-DKSIFACLLSTRAGGQ 668
Query: 529 GINLTTADIVVLYDSDWNPQADLQAMDRAHRIGQKKQVRVFRFVTDNSVEEKILERATQK 588
G+NLT AD V+++D D+NPQ D QA DR HRIGQ K V +FR VT ++V+E I E A +K
Sbjct: 669 GLNLTGADTVIIHDMDFNPQIDRQAEDRCHRIGQTKPVTIFRLVTKSTVDENIYEIAKRK 728
Query: 589 LKLDQLVIQQG 599
L LD V++ G
Sbjct: 729 LVLDAAVLESG 739
>SPCC1235.05c [B] KOG0389 SNF2 family DNA-dependent ATPase
Length = 1284
Score = 262 bits (670), Expect = 2e-69
Identities = 183/535 (34%), Positives = 269/535 (50%), Gaps = 81/535 (15%)
Query: 140 QLRPYQIQGLNWLVALHKNQLAGILADEMGLGKTLQTIAFLGYLRYIEKKNGPFLVIAPK 199
QL+ YQ+ G+NWL L++ +L+GILADEMGLGKT Q +AF L + +GP LV+ P
Sbjct: 549 QLKSYQLVGVNWLHLLYQQKLSGILADEMGLGKTCQVVAFFALLLE-QGHHGPHLVVVPS 607
Query: 200 STLNNWLREINRWTPEVSAFILQGDKEERSKLCHD-KLLACDFDICVASYEIIIREKAS- 257
STL NWLRE+ R+ P + G ++ER+ + + +DI V +Y++ K
Sbjct: 608 STLENWLRELARFCPSLRVEPYYGSQQERANIREAIEENEIKYDILVTTYQLATNNKEDR 667
Query: 258 --FKKIDWEYVVIDEAHRIKNEESMLSQVLREFSSRNRLLITGTPLQNNLHELWALLNFL 315
K +++ V DE H +KN S + L ++ RLL+TGTPLQNNL EL +LL F+
Sbjct: 668 SFLKHQNFDVCVYDEGHYLKNRMSERYKHLMNLNANFRLLLTGTPLQNNLKELVSLLAFI 727
Query: 316 LPDIFADSATXXXXXXXXXXXXXXXXV---------VKQLHTVLSPFLLRRIKNDVEGSL 366
LP++F DS + + + T+++PF+LRR KN V L
Sbjct: 728 LPNMF-DSDMDDLDVIFKAKPTADADIEQALLSKQRISRAKTMMTPFVLRRRKNQVLNDL 786
Query: 367 LPKK------------ELNVYVGMSSMQKKWYKQILEKDIDAVNGSNGQKESKTRLLN-- 412
PKK +L +Y +++QK Q L +D S +ES + L+
Sbjct: 787 -PKKTQIIEHCKLSENQLEIYNRYAALQKN---QQLRRDDKRNKRSKNDEESDGKSLSAG 842
Query: 413 -IVMQLRKCCNHP-------------------------------YLFDGAEPGPP----- 435
++MQLRK NH Y+++ E
Sbjct: 843 HVLMQLRKAANHALLFRKFYDDEKLKQMAKDIMQEEQYKNANEQYIYEDMEVMSDFELHR 902
Query: 436 ----------YTTDEHLVYNSAXXXXXXXXXXXXXEQGSRVLIFSQMSRVLDILEDYCYF 485
YT + +S E+GSR+L+FSQ +++LDILE
Sbjct: 903 LCRSFPTLQSYTLKDDPWMDSGKIRVLKELLPKMKEEGSRILLFSQFTQMLDILEQVLDT 962
Query: 486 REYEYCRIDGSTAHEDRINAIDDYNAPDSKKFIFLLTTRAGGLGINLTTADIVVLYDSDW 545
+ Y R+DGST E R + ID ++ + +FLL+T+AGG GINL A++V+LYD +
Sbjct: 963 LKISYVRLDGSTQVEVRQDIIDQFHKEEDVT-VFLLSTKAGGFGINLACANVVILYDCSY 1021
Query: 546 NPQADLQAMDRAHRIGQKKQVRVFRFVTDNSVEEKILERATQKLKLDQLVIQQGR 600
NP DLQA DRAHR+GQ ++V V R +TDN++EE I + A KL LD + G+
Sbjct: 1022 NPFDDLQAEDRAHRVGQVREVTVIRLITDNTIEEYIQKLANTKLALDMSLSSDGK 1076
>SPAC20G8.08c [B] KOG0389 SNF2 family DNA-dependent ATPase
Length = 944
Score = 256 bits (653), Expect = 2e-67
Identities = 179/508 (35%), Positives = 254/508 (49%), Gaps = 69/508 (13%)
Query: 141 LRPYQIQGLNWLVALHKNQLAGILADEMGLGKTLQTIAFLGYLRYIEKKNGPFLVIAPKS 200
L+ YQI GLNWL ++K +L+GILADEMGLGKT Q I+FL L+ +N LV+ P S
Sbjct: 414 LKSYQIVGLNWLCLMYKAKLSGILADEMGLGKTCQVISFLASLKEKGIQNR-HLVVVPSS 472
Query: 201 TLNNWLREINRWTPEVSAFILQGDKEERSKLCHDKLLACDFDICVASYEIII--REKASF 258
TL NWLRE ++ P + G + ER + L+ DFD+ V +Y++ R+ SF
Sbjct: 473 TLGNWLREFEKFCPSLRVESYSGTQSERINKRY-YLMDTDFDVLVTTYQLASGSRDDRSF 531
Query: 259 -KKIDWEYVVIDEAHRIKNEESMLSQVLREFSSRNRLLITGTPLQNNLHELWALLNFLLP 317
+K ++ + DE H +KN S + L + RLLITGTPLQNNL EL +LL F+LP
Sbjct: 532 LRKQRFDISIFDEGHYLKNRMSERYKHLMNIPANFRLLITGTPLQNNLKELISLLAFMLP 591
Query: 318 DIFADSATX--------XXXXXXXXXXXXXXXVVKQLHTVLSPFLLRRIKNDVEGSLLPK 369
+F ++ + + T+++PF+LRR K +V L PK
Sbjct: 592 KVFDNNMQGLDIIYKIKTTSDGDIERAYLSQERISRAKTIMNPFILRRRKENVLSDLPPK 651
Query: 370 KELNVYVGMSSMQKKWYKQILEKDIDAVNGSNGQKESKTRLLNIVMQLRKCC-------- 421
+ Y M Q Y +LE N N +E NI+MQLRK
Sbjct: 652 IQHVEYCHMEETQLSLYLSVLELK----NLVNANRE------NILMQLRKAALHQLLFRS 701
Query: 422 -----------------------NHPYLFDGAEPGPPYTTDE------HL--------VY 444
N Y+F+ E + + HL +
Sbjct: 702 QYNLETLSLMSKRILREDAYLDANPQYIFEDMEVMSDFELHKLADQYRHLHPFALKGKPW 761
Query: 445 NSAXXXXXXXXXXXXXEQGSRVLIFSQMSRVLDILEDYCYFREYEYCRIDGSTAHEDRIN 504
+ R+LIFSQ ++VLDILE + E+ R+DGST E R
Sbjct: 762 MDSAKVKKLCSLLKKSRPNERILIFSQFTQVLDILEYVLNTLDLEFLRLDGSTPVETRQQ 821
Query: 505 AIDDYNAPDSKKFIFLLTTRAGGLGINLTTADIVVLYDSDWNPQADLQAMDRAHRIGQKK 564
IDD++ ++ K +FLL+T++GG GINLT A+IV+L+D +NP D+QA DRAHR+GQ +
Sbjct: 822 LIDDFHTNENYK-VFLLSTKSGGFGINLTCANIVILFDCSFNPFDDMQAEDRAHRVGQTR 880
Query: 565 QVRVFRFVTDNSVEEKILERATQKLKLD 592
V V+R +T N++EE I A KL L+
Sbjct: 881 PVHVYRLITKNTIEENIRRLANTKLTLE 908
>At2g18760 [KL] KOG0387 Transcription-coupled repair protein CSB/RAD26
(contains SNF2 family DNA-dependent ATPase domain)
Length = 1187
Score = 256 bits (653), Expect = 2e-67
Identities = 161/511 (31%), Positives = 249/511 (48%), Gaps = 59/511 (11%)
Query: 134 PAYVNGQLRPYQIQGLNWLVALHKNQLAGILADEMGLGKTLQTIAFLGYLRYIEKKNGPF 193
P + +L YQ G+ WL LH + GI+ DEMGLGKT+Q ++FLG L + K P
Sbjct: 378 PECIFRKLFDYQRVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGSLHF-SKMYKPS 436
Query: 194 LVIAPKSTLNNWLREINRWTPEVSAFILQ---------------------------GDKE 226
++I P + L W RE +W P+ IL D E
Sbjct: 437 IIICPVTLLRQWRREAQKWYPDFHVEILHDSAQDSGHGKGQGKASESDYDSESSVDSDHE 496
Query: 227 ERSKLCH------DKLLACDFDICVASYEIIIREKASFKKIDWEYVVIDEAHRIKNEESM 280
+SK +++L + + + +YE + + I+W Y V+DE HRI+N S
Sbjct: 497 PKSKNTKKWDSLLNRVLNSESGLLITTYEQLRLQGEKLLNIEWGYAVLDEGHRIRNPNSD 556
Query: 281 LSQVLREFSSRNRLLITGTPLQNNLHELWALLNFLLP-----------DIFADSATXXXX 329
++ V ++ + +R+++TG P+QN L ELW+L +F+ P +
Sbjct: 557 ITLVCKQLQTVHRIIMTGAPIQNKLTELWSLFDFVFPGKLGVLPVFEAEFSVPITVGGYA 616
Query: 330 XXXXXXXXXXXXVVKQLHTVLSPFLLRRIKNDVEGSLLPKKELNVYVGMSSMQKKWYKQI 389
L ++ P+LLRR+K DV L K E ++ ++ Q+ Y+
Sbjct: 617 NASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAHLTKKTEHVLFCSLTVEQRSTYRAF 676
Query: 390 L-EKDIDAVNGSNGQKESKTRLLNIVMQLRKCCNHPYLFDG--AEPGPPYTTDEHLVYNS 446
L +++ + N + L I + +RK CNHP L + + P Y E S
Sbjct: 677 LASSEVEQIFDGN-----RNSLYGIDV-MRKICNHPDLLEREHSHQNPDYGNPER----S 726
Query: 447 AXXXXXXXXXXXXXEQGSRVLIFSQMSRVLDILEDYCYFREYEYCRIDGSTAHEDRINAI 506
+QG RVL+FSQ ++LDILE + EY Y R+DG T + R+ I
Sbjct: 727 GKMKVVAEVLKVWKQQGHRVLLFSQTQQMLDILESFLVANEYSYRRMDGLTPVKQRMALI 786
Query: 507 DDYNAPDSKKFIFLLTTRAGGLGINLTTADIVVLYDSDWNPQADLQAMDRAHRIGQKKQV 566
D++N + F+F+LTT+ GGLG NLT A+ V+++D DWNP D+QA +RA RIGQKK V
Sbjct: 787 DEFNNSEDM-FVFVLTTKVGGLGTNLTGANRVIIFDPDWNPSNDMQARERAWRIGQKKDV 845
Query: 567 RVFRFVTDNSVEEKILERATQKLKLDQLVIQ 597
V+R +T ++EEK+ R K L +++
Sbjct: 846 TVYRLITRGTIEEKVYHRQIYKHFLTNKILK 876
>ECU09g0410 [KL] KOG0387 Transcription-coupled repair protein CSB/RAD26
(contains SNF2 family DNA-dependent ATPase domain)
Length = 695
Score = 250 bits (638), Expect = 1e-65
Identities = 160/503 (31%), Positives = 254/503 (49%), Gaps = 60/503 (11%)
Query: 134 PAYVNGQLRPYQIQGLNWLVALHKNQLAGILADEMGLGKTLQTIAFLGYLRYIEKKNGPF 193
P ++ L PYQ G+ W++ L++++ G+LAD+MGLGKT+Q I FLG L + +
Sbjct: 144 PGFLWSSLFPYQQDGVRWMLRLYRDEKGGVLADDMGLGKTIQVIVFLGALLH-SRVVSKA 202
Query: 194 LVIAPKSTLNNWLREINRWTPEVSAFILQGDKEERSKLCHDKLLACDFDICVASYEIIIR 253
L++ P + ++ W+ E R+ P V F +++ C+ + + SYE +
Sbjct: 203 LILCPATIVSQWMDEWKRFYPFVRIFFGFPNED------------CE-GVYLMSYE---K 246
Query: 254 EKASFKKIDWEYVVIDEAHRIKNEESMLSQVLREFSSRNRLLITGTPLQNNLHELWALLN 313
KA K W+ +++DE HRIKN+ + ++ +++ SR R +++GTP+QNNL ELW++ +
Sbjct: 247 FKAGVKNFLWDVLILDEGHRIKNKNAQITLSVKKARSRGRFVLSGTPIQNNLGELWSIFD 306
Query: 314 FLLPDIFADSATXXXXXXXXXXXXXXXXVVK-----------QLHTVLSPFLLRRIKNDV 362
F+ P + + L +++ P++LRR K+ V
Sbjct: 307 FVNPGLLGSHTSFNEEFEEVIRRGGYRNASNLQVEKAYRHSLMLRSLIEPYILRRTKSQV 366
Query: 363 EGSLLPKKELNVYVGMSSMQKKWYKQILE-KDIDAVNGSNGQKESKTRLLNIVMQLRKCC 421
L K++ V+ ++ Q + Y ++LE K I V K LL+ + LRK C
Sbjct: 367 SHKLPSKEDKIVFCSLTPAQIELYNRVLESKHIMKV------LTGKANLLSGISMLRKVC 420
Query: 422 NHPYLF----------------------DGAEPGPPYTTDEHLVYNSAXXXXXXXXXXXX 459
NHP L D A P LV +S
Sbjct: 421 NHPRLLFPRKLGVSEDCEEEASDEKNGEDEALELPGADVSYDLVSSSCKIKILVDLLKKW 480
Query: 460 XEQGSRVLIFSQMSRVLDILEDYCYFREYEYCRIDGSTAHEDRINAIDDYNAPDSKKFIF 519
+G++VL+FSQ R+LDI+E R+Y Y R+DG T R +D +N D F+F
Sbjct: 481 RSEGNKVLVFSQTIRMLDIIERCV--RKYTYLRMDGRTPTSSRPGLVDRFNE-DEDVFLF 537
Query: 520 LLTTRAGGLGINLTTADIVVLYDSDWNPQADLQAMDRAHRIGQKKQVRVFRFVTDNSVEE 579
LLTT+ GGLG+NLT A +V+YD DWNP D QA +RA R GQKK V ++RFV +++EE
Sbjct: 538 LLTTKVGGLGLNLTGASRIVIYDPDWNPSTDTQAKERAWRYGQKKGVEIYRFVCKDTIEE 597
Query: 580 KILERATQKLKLDQLVIQQGRVT 602
K+ ++ K L + V+ R++
Sbjct: 598 KVYQKQIFKDLLGKKVLSNPRLS 620
>7300091 [K] KOG0392 SNF2 family DNA-dependent ATPase domain-containing
protein
Length = 1861
Score = 248 bits (633), Expect = 4e-65
Identities = 168/504 (33%), Positives = 244/504 (48%), Gaps = 51/504 (10%)
Query: 134 PAYVNGQLRPYQIQGLNWLVALHKNQLAGILADEMGLGKTLQTIAFLG----YLRYIEKK 189
P ++ +LR YQ G+NWL L+K L GIL D+MGLGKTLQTI L + +
Sbjct: 1281 PVPISVELRCYQQAGINWLWFLNKYNLHGILCDDMGLGKTLQTICILAGDHMHRQTANLA 1340
Query: 190 NGPFLVIAPKSTLNNWLREINRWTPEVSAFI---LQGDKEERSKLCHDKLLACDFDICVA 246
N P LVI P + +W+ E+ ++ + S G R KL D C+ + VA
Sbjct: 1341 NLPSLVICPPTLTGHWVYEVEKFLDQGSVLRPLHYYGFPVGREKLRSDIGTKCN--LVVA 1398
Query: 247 SYEIIIREKASFKKIDWEYVVIDEAHRIKNEESMLSQVLREFSSRNRLLITGTPLQNNLH 306
SY+ + ++ F I + Y V+DE H IKN ++ S+ ++ + +RL+++GTP+QNN+
Sbjct: 1399 SYDTVRKDIDFFSGIHFNYCVLDEGHIIKNGKTKSSKAIKRLKANHRLILSGTPIQNNVL 1458
Query: 307 ELWALLNFLLPDIFADSA-----------TXXXXXXXXXXXXXXXXVVKQLHTVLSPFLL 355
ELW+L +FL+P + ++ LH + PFLL
Sbjct: 1459 ELWSLFDFLMPGFLGTEKQFVQRFSRPILSSRDAKSSAKEQEAGVLAMEALHRQVLPFLL 1518
Query: 356 RRIKNDVEGSLLPKKELNVYVGMSSMQKKWYKQILEKDIDAVNGSNGQKES--------- 406
RR+K DV L PK ++ +S +Q + Y+ K + G S
Sbjct: 1519 RRVKEDVLKDLPPKITQDLLCELSPLQLRLYEDFSNKHLKDCLDKLGDSSSASMVTENLS 1578
Query: 407 -KTRLLNIVMQLRKCCNHPYLFDGAEPGPPYTTDEHLVYNSAXXXXXXXXXXXXXEQ--- 462
KT + + L+ CNHP L T + + NS+ +Q
Sbjct: 1579 AKTHIFQALRYLQNVCNHPKLVLRQSEELTKVTSQLALSNSSLDDIEHSAKLPALKQLLL 1638
Query: 463 ------------GSRVLIFSQMSRVLDILEDYCYFREYE---YCRIDGSTAHEDRINAID 507
R LIF Q+ +LDI+E R Y R+DGS R + ++
Sbjct: 1639 DCGIGVQTESVSQHRALIFCQLKAMLDIVEQDLLRRHLPSVTYLRLDGSVPASQRQDIVN 1698
Query: 508 DYNAPDSKKFIFLLTTRAGGLGINLTTADIVVLYDSDWNPQADLQAMDRAHRIGQKKQVR 567
++N+ D + LLTT GGLG+NLT AD V+ + DWNP DLQAMDRAHRIGQKK V
Sbjct: 1699 NFNS-DPSIDVLLLTTMVGGLGLNLTGADTVIFVEHDWNPMKDLQAMDRAHRIGQKKVVN 1757
Query: 568 VFRFVTDNSVEEKILERATQKLKL 591
V+R +T NS+EEKI+ QK K+
Sbjct: 1758 VYRLITRNSLEEKIM--GLQKFKI 1779
>Hs17454125 [K] KOG0392 SNF2 family DNA-dependent ATPase domain-containing
protein
Length = 1849
Score = 244 bits (623), Expect = 5e-64
Identities = 172/527 (32%), Positives = 255/527 (47%), Gaps = 66/527 (12%)
Query: 134 PAYVNGQLRPYQIQGLNWLVALHKNQLAGILADEMGLGKTLQTIAFLG---------YLR 184
P +N +LR YQ G+NWL L+K +L GIL D+MGLGKTLQ+I L Y R
Sbjct: 1259 PVPINAELRKYQQDGVNWLAFLNKYKLHGILCDDMGLGKTLQSICILAGDHCHRAQEYAR 1318
Query: 185 --YIEKKNGPFLVIAPKSTLNNWLREINRWTPE--VSAFILQGDKEERSKLCHDKLLACD 240
E P LV+ P + +W+ E+ ++ ++ G ER +L H
Sbjct: 1319 SKLAECMPLPSLVVCPPTLTGHWVDEVGKFCSREYLNPLHYTGPPTERIRLQHQ---VKR 1375
Query: 241 FDICVASYEIIIREKASFKKIDWEYVVIDEAHRIKNEESMLSQVLREFSSRNRLLITGTP 300
++ VASY+++ + F+ I + Y ++DE H IKN ++ LS+ +++ ++ R++++GTP
Sbjct: 1376 HNLIVASYDVVRNDIDFFRNIKFNYCILDEGHVIKNGKTKLSKAVKQLTANYRIILSGTP 1435
Query: 301 LQNNLHELWALLNFLLPDIFADS-----------ATXXXXXXXXXXXXXXXXVVKQLHTV 349
+QNN+ ELW+L +FL+P + LH
Sbjct: 1436 IQNNVLELWSLFDFLMPGFLGTERQFAARYGKPILASRDARSSSREQEAGVLAMDALHRQ 1495
Query: 350 LSPFLLRRIKNDVEGSLLPKKELNVYVGMSSMQKKWYKQI--------LEKDIDAVNGSN 401
+ PFLLRR+K DV L PK + Y +S +Q + Y+ +++ + + S
Sbjct: 1496 VLPFLLRRMKEDVLQDLPPKIIQDYYCTLSPLQVQLYEDFAKSRAKCDVDETVSSATLSE 1555
Query: 402 GQKESKTRLLNIVMQ----LRKCCNHPYLFDGAEPGPPYTTDEHL-VYNSAXXXXXXXXX 456
++ K + V Q LRK CNHP L + TT E L V NS+
Sbjct: 1556 ETEKPKLKATGHVFQALQYLRKLCNHPALVLTPQHPEFKTTAEKLAVQNSSLHDIQHAPK 1615
Query: 457 XXXXEQ---------GS-------------RVLIFSQMSRVLDILEDYC---YFREYEYC 491
+Q GS R+LIF Q+ +LDI+E + Y
Sbjct: 1616 LSALKQLLLDCGLGNGSTSESGTESVVAQHRILIFCQLKSMLDIVEHDLLKPHLPSVTYL 1675
Query: 492 RIDGSTAHEDRINAIDDYNAPDSKKFIFLLTTRAGGLGINLTTADIVVLYDSDWNPQADL 551
R+DGS R + + +N D + LLTT GGLG+NLT AD VV + DWNP DL
Sbjct: 1676 RLDGSIPPGQRHSIVSRFN-NDPSIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDL 1734
Query: 552 QAMDRAHRIGQKKQVRVFRFVTDNSVEEKILERATQKLKLDQLVIQQ 598
QAMDRAHRIGQK+ V V+R +T ++EEKI+ K+ + VI Q
Sbjct: 1735 QAMDRAHRIGQKRVVNVYRLITRGTLEEKIMGLQKFKMNIANTVISQ 1781
>YJR035w [KL] KOG0387 Transcription-coupled repair protein CSB/RAD26
(contains SNF2 family DNA-dependent ATPase domain)
Length = 1085
Score = 240 bits (613), Expect = 8e-63
Identities = 157/526 (29%), Positives = 245/526 (45%), Gaps = 75/526 (14%)
Query: 134 PAYVNGQLRPYQIQGLNWLVALHKNQLAGILADEMGLGKTLQTIAFLGYLRYIEKKNGPF 193
P + L YQ + WL L++ GI+ DEMGLGKT+Q IAF+ L + GP
Sbjct: 290 PGEIYSLLFNYQKTCVQWLYELYQQNCGGIIGDEMGLGKTIQVIAFIAALHHSGLLTGPV 349
Query: 194 LVIAPKSTLNNWLREINRWTPEVSAFILQG------------------------------ 223
L++ P + + W E W P + IL
Sbjct: 350 LIVCPATVMKQWCNEFQHWWPPLRTVILHSMGSGMASDQKFKMDENDLENLIMNSKPSDF 409
Query: 224 -----------DKEERSKLCHDKLL---ACDFDICVASYEIIIREKASFKKIDWEYVVID 269
K S DKL+ D I + +Y + K+ W+Y V+D
Sbjct: 410 SYEDWKNSTRTKKALESSYHLDKLIDKVVTDGHILITTYVGLRIHSDKLLKVKWQYAVLD 469
Query: 270 EAHRIKNEESMLSQVLREFSSRNRLLITGTPLQNNLHELWALLNFLLPD------IFADS 323
E H+I+N +S +S ++ + NR++++GTP+QNNL ELW+L +F+ P +F
Sbjct: 470 EGHKIRNPDSEISLTCKKLKTHNRIILSGTPIQNNLTELWSLFDFIFPGKLGTLPVFQQQ 529
Query: 324 ATX-----XXXXXXXXXXXXXXXVVKQLHTVLSPFLLRRIKNDVEGSLLPKKELNVYVGM 378
L ++SP+LLRR+K DV L KKE+ ++ +
Sbjct: 530 FVIPINIGGYANATNIQVQTGYKCAVALRDLISPYLLRRVKADVAKDLPQKKEMVLFCKL 589
Query: 379 SSMQKKWYKQILEKDIDAVNGSNGQKESKTRLLNIVMQLRKCCNHPYLFDG--AEPGPPY 436
+ Q+ Y + L + N + K +L + LRK CNHP L D P Y
Sbjct: 590 TKYQRSKYLEFLHS-----SDLNQIQNGKRNVLFGIDILRKICNHPDLLDRDTKRHNPDY 644
Query: 437 TTDEHLVYNSAXXXXXXXXXXXXXEQGSRVLIFSQMSRVLDILEDYCYFREYE-----YC 491
+ S +QG + L+F+Q ++LDILE++ ++ + Y
Sbjct: 645 GDPKR----SGKMQVVKQLLLLWHKQGYKALLFTQSRQMLDILEEFISTKDPDLSHLNYL 700
Query: 492 RIDGSTAHEDRINAIDDYNAPDSKKF-IFLLTTRAGGLGINLTTADIVVLYDSDWNPQAD 550
R+DG+T + R + +D +N ++ F +FLLTTR GGLG+NLT A+ ++++D DWNP D
Sbjct: 701 RMDGTTNIKGRQSLVDRFN---NESFDVFLLTTRVGGLGVNLTGANRIIIFDPDWNPSTD 757
Query: 551 LQAMDRAHRIGQKKQVRVFRFVTDNSVEEKILERATQKLKLDQLVI 596
+QA +RA RIGQK++V ++R + S+EEKI R K L ++
Sbjct: 758 MQARERAWRIGQKREVSIYRLMVGGSIEEKIYHRQIFKQFLTNRIL 803
>ECU03g1530 [K] KOG0392 SNF2 family DNA-dependent ATPase domain-containing
protein
Length = 1256
Score = 238 bits (606), Expect = 5e-62
Identities = 155/475 (32%), Positives = 248/475 (51%), Gaps = 45/475 (9%)
Query: 137 VNGQLRPYQIQGLNWLVALHKNQLAGILADEMGLGKTLQTIAFLGYLRYIEKKNGPFLVI 196
++ +LR YQ++G+ WL L+ L GILAD+MGLGKTLQ + FL I K N LVI
Sbjct: 793 ISVKLRDYQMEGVKWLNFLYSFSLNGILADDMGLGKTLQVLTFL--CSEIYKTNRKVLVI 850
Query: 197 APKSTLNNWLREINRWTPEVSAFILQGDKEERSKLCHDKLLACDFDICVASYEIIIREKA 256
P S +W E+ ++ P V+A I + +E+R + I ++SYE +
Sbjct: 851 CPSSLTGHWKSEVKKFFPFVAAEIYK--REDRDT----------YSILISSYETFRNDYL 898
Query: 257 SFKKIDWEYVVIDEAHRIKNEESMLSQVLREFSSRNRLLITGTPLQNNLHELWALLNFLL 316
+F + DW YVV+DE H ++N++++L + ++++TGTP+ N++ +L +L NFL+
Sbjct: 899 NFIEKDWFYVVVDEGHVLRNKQTILYSRMNMIRCSRKMVLTGTPVHNSVEDLISLFNFLM 958
Query: 317 PDIFADSAT--XXXXXXXXXXXXXXXXVVKQLHTVLSPFLLRRIKNDVEGSLLPKKELNV 374
P+ + LH + PF+LRR+K DV L PK ++
Sbjct: 959 PNYIGPEKEYGSLNVKMSDSEIEKTHKRLDLLHRKVLPFILRRLKIDVLKDLPPKIIRDI 1018
Query: 375 YVGMSSMQKKWYKQILEK-------DIDAVNGSNGQKE---SKTRLLNIVMQLRKCCNHP 424
V + +Q+K Y++I EK D + G QK +TR L + + +
Sbjct: 1019 TVELGPVQEKLYREIDEKGGKESLGDAELEYGKVDQKNVGFKRTRDLFLAVS-----HIG 1073
Query: 425 YLFDGAEPGPPYTTDEHLVYNSAXXXXXXXXXXXXXEQGSRVLIFSQMSRVLD-ILEDYC 483
+ D E E ++ + GS++LIF Q +D +++D
Sbjct: 1074 HFKDSTEVSCKVKALEDII-----------SLCGGEDLGSKILIFFQFKSTIDLVIKDIM 1122
Query: 484 YFREYEYCRIDGSTAHEDRINAIDDYNAPDSKKFIFLLTTRAGGLGINLTTADIVVLYDS 543
+++Y R+DGS R +++N ++ + LTT+ GGLG+NLT AD VV+Y+
Sbjct: 1123 KKYKFKYSRLDGSVPSAARTKIAEEFNTGTTQ--MLFLTTQVGGLGLNLTGADTVVMYEH 1180
Query: 544 DWNPQADLQAMDRAHRIGQKKQVRVFRFVTDNSVEEKILERATQKLKLDQLVIQQ 598
DWNP DLQAMDRAHRIGQK+ V VFRF+ N++EEK++ + K+ + ++ Q
Sbjct: 1181 DWNPFNDLQAMDRAHRIGQKRTVNVFRFIARNTLEEKVMNLQSFKMFVANSLVSQ 1235
>YAL019w [B] KOG0389 SNF2 family DNA-dependent ATPase
Length = 1131
Score = 235 bits (599), Expect = 3e-61
Identities = 175/551 (31%), Positives = 257/551 (45%), Gaps = 77/551 (13%)
Query: 141 LRPYQIQGLNWLVALHKNQLAGILADEMGLGKTLQTIAFLGYLRYIEKKNGPFLVIAPKS 200
L+ YQ G+NWL L++N+++ ILAD+MGLGKT Q I+F YL+ I + GP LV+ P S
Sbjct: 572 LKDYQQTGINWLNLLYQNKMSCILADDMGLGKTCQVISFFAYLKQINEP-GPHLVVVPSS 630
Query: 201 TLNNWLREINRWTPEVSAFILQGDKEERSKLCHDKLL--ACDFDICVASYEIIIREK--- 255
TL NWLRE ++ P + G +ER +L D L A +D+ V +Y + K
Sbjct: 631 TLENWLREFQKFAPALKIEPYYGSLQEREEL-RDILERNAGKYDVIVTTYNLAAGNKYDV 689
Query: 256 ASFKKIDWEYVVIDEAHRIKNEESMLSQVLREFSSRNRLLITGTPLQNNLHELWALLNFL 315
+ K ++ VV DE H +KN S L + + RLL+TGTPLQNNL EL +LL F+
Sbjct: 690 SFLKNRNFNVVVYDEGHMLKNSTSERFAKLMKIRANFRLLLTGTPLQNNLKELMSLLEFI 749
Query: 316 LPDIFADSATXXXXXXXXXXXXX----------XXXVVKQLHTVLSPFLLRRIKNDVEGS 365
+P++F + + T++ PF+LRR K+ V
Sbjct: 750 MPNLFISKKESFDAIFKQRAKTTDDNKNHNPLLAQEAITRAKTMMKPFILRRRKDQVLKH 809
Query: 366 LLPKKELNVYVGMSSMQKKWYK---QILEKDIDAVNGSNGQKESKTR-------LLNIVM 415
L PK Y ++++QKK Y QI+ + + K++K + N++M
Sbjct: 810 LPPKHTHIQYCELNAIQKKIYDKEIQIVLEHKRMIKDGELPKDAKEKSKLQSSSSKNLIM 869
Query: 416 QLRKCCNHPYLFDG--------------------AEPG--------PPYTTDEHL----- 442
LRK HP LF AE G Y TD L
Sbjct: 870 ALRKASLHPLLFRNIYNDKIITKMSDAILDEPAYAENGNKEYIKEDMSYMTDFELHKLCC 929
Query: 443 -------VYNSAXXXXXXXXXXXXXEQGSRVLIFSQMSRVL---------DILEDYCYFR 486
Y ++ + +I + +VL DILE
Sbjct: 930 NFPNTLSKYQLHNDEWMQSGKIDALKKLLKTIIVDKQEKVLIFSLFTQVLDILEMVLSTL 989
Query: 487 EYEYCRIDGSTAHEDRINAIDDYNAPDSKKFIFLLTTRAGGLGINLTTADIVVLYDSDWN 546
+Y++ R+DGST DR ID + D IF+L+T+AGG GINL A+ V+++D +N
Sbjct: 990 DYKFLRLDGSTQVNDRQLLIDKF-YEDKDIPIFILSTKAGGFGINLVCANNVIIFDQSFN 1048
Query: 547 PQADLQAMDRAHRIGQKKQVRVFRFVTDNSVEEKILERATQKLKLDQLVIQQGRVTXXXX 606
P D QA DRAHR+GQ K+V + +T +S+EEKI + A KL LD + + +
Sbjct: 1049 PHDDRQAADRAHRVGQTKEVNITTLITKDSIEEKIHQLAKNKLALDSYISEDKKSQDVLE 1108
Query: 607 XXXXDSKEGLL 617
D E ++
Sbjct: 1109 SKVSDMLEDII 1119
>SPCP25A2.02c [KL] KOG0387 Transcription-coupled repair protein CSB/RAD26
(contains SNF2 family DNA-dependent ATPase domain)
Length = 973
Score = 235 bits (599), Expect = 3e-61
Identities = 164/526 (31%), Positives = 254/526 (48%), Gaps = 84/526 (15%)
Query: 137 VNGQLRP----YQIQGLNWLVALHKNQLAGILADEMGLGKTLQTIAFLGYLRYIEKKNGP 192
+ G +RP YQ+ + WL L+ + GI+ DEMGLGKT+Q ++FL L + K P
Sbjct: 269 IPGDIRPHLFRYQVTCVQWLWELYCQEAGGIIGDEMGLGKTIQIVSFLSSLHHSGKFQKP 328
Query: 193 FLVIAPKSTLNNWLREINRWTPEVSAFILQ----GDKEERSKLCHDKLLACDFDICVASY 248
L++ P + + W+ E + W + +L G + R K ++ A + + +
Sbjct: 329 ALIVCPATLMKQWVNEFHTWWAPLRVVVLHATGSGQRASREKRQYESD-ASESEAEESKT 387
Query: 249 EIIIR-EKASFKKI--------------------------------DWEYVVIDEAHRIK 275
I +R +SF + +W Y V+DE H+I+
Sbjct: 388 SIKLRGASSSFHRYAKNLVESVFTRGHILITTYAGLRIYGDLILPREWGYCVLDEGHKIR 447
Query: 276 NEESMLSQVLREFSSRNRLLITGTPLQNNLHELWALLNFLLPD------IFADSATX--- 326
N +S +S ++ + NR++++GTP+QNNL ELW L +F+ P +F +
Sbjct: 448 NPDSEISISCKQIRTVNRIILSGTPIQNNLTELWNLFDFVFPGRLGTLPVFQNQFALPIN 507
Query: 327 --XXXXXXXXXXXXXXXVVKQLHTVLSPFLLRRIKNDVEGSLLPKKELNVYVGMSSMQKK 384
L ++SP+LLRR+K DV L K E ++ ++ +Q+K
Sbjct: 508 IGGYANASNVQVQTAYKCACMLRDLISPYLLRRMKLDVAADLPKKSEQVLFCKLTPLQRK 567
Query: 385 WYKQILEKDIDAVNGSNGQK--ESKTRLLNIVMQLRKCCNHPYLFDGAEPGPPYTTDEHL 442
Y+ L+ GS+ QK K ++L + LRK CNHP L T E+L
Sbjct: 568 AYQDFLQ-------GSDMQKILNGKRQMLYGIDILRKICNHPDL----------VTREYL 610
Query: 443 VYN----------SAXXXXXXXXXXXXXEQGSRVLIFSQMSRVLDILE-DYCYFREYEYC 491
++ S +QG R L+FSQ ++LDILE + YC
Sbjct: 611 LHKEDYNYGDPEKSGKLKVIRALLTLWKKQGHRTLLFSQTRQMLDILEIGLKDLPDVHYC 670
Query: 492 RIDGSTAHEDRINAIDDYNAPDSKKFIFLLTTRAGGLGINLTTADIVVLYDSDWNPQADL 551
R+DGST+ R + +D++N + +FLLTTR GGLG+NLT AD V+L+D DWNP D
Sbjct: 671 RMDGSTSIALRQDLVDNFNKNEYFD-VFLLTTRVGGLGVNLTGADRVILFDPDWNPSTDA 729
Query: 552 QAMDRAHRIGQKKQVRVFRFVTDNSVEEKILERATQKLKLDQLVIQ 597
QA +RA R+GQKK V V+R +T ++EEKI R K L +++
Sbjct: 730 QARERAWRLGQKKDVVVYRLMTAGTIEEKIYHRQIFKQFLTNKILK 775
>At3g57300 [L] KOG0388 SNF2 family DNA-dependent ATPase
Length = 1496
Score = 228 bits (581), Expect = 4e-59
Identities = 129/318 (40%), Positives = 191/318 (59%), Gaps = 20/318 (6%)
Query: 132 ESPAYVNGQLRPYQIQGLNWLVALHKNQLAGILADEMGLGKTLQTIAFLGYLRYIEKKN- 190
++P G L+ YQ++GL WLV ++ L GILADEMGLGKT+Q +AFL +L E+KN
Sbjct: 577 QTPELFKGTLKEYQMKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHL--AEEKNI 634
Query: 191 -GPFLVIAPKSTLNNWLREINRWTPEVSAFILQGDKEERS---KLCHDKLL---ACDFDI 243
GPFLV+AP S LNNW EI+R+ P++ G +ER+ K + K + F I
Sbjct: 635 WGPFLVVAPASVLNNWADEISRFCPDLKTLPYWGGLQERTILRKNINPKRMYRRDAGFHI 694
Query: 244 CVASYEIIIREKASFKKIDWEYVVIDEAHRIKNEESMLSQVLREFSSRNRLLITGTPLQN 303
+ SY++++ ++ F+++ W+Y+V+DEA IK+ S+ + L F+ RNRLL+TGTP+QN
Sbjct: 695 LITSYQLLVTDEKYFRRVKWQYMVLDEAQAIKSSSSIRWKTLLSFNCRNRLLLTGTPIQN 754
Query: 304 NLHELWALLNFLLP------DIFADSATXXXXXXXXXXXXXXXXVVKQLHTVLSPFLLRR 357
N+ ELWALL+F++P D F + + + +LH +L PF+LRR
Sbjct: 755 NMAELWALLHFIMPMLFDNHDQFNEWFSKGIENHAEHGGTLNEHQLNRLHAILKPFMLRR 814
Query: 358 IKNDVEGSLLPKKELNVYVGMSSMQKKWYKQILEKD--IDAVNGSNGQKESK--TRLLNI 413
+K DV L K E+ V+ +SS Q+ +Y+ I K + + + GQ K L+NI
Sbjct: 815 VKKDVVSELTTKTEVTVHCKLSSRQQAFYQAIKNKISLAELFDSNRGQFTDKKVLNLMNI 874
Query: 414 VMQLRKCCNHPYLFDGAE 431
V+QLRK CNHP LF+ E
Sbjct: 875 VIQLRKVCNHPELFERNE 892
Score = 145 bits (365), Expect = 4e-34
Identities = 76/137 (55%), Positives = 99/137 (71%), Gaps = 10/137 (7%)
Query: 465 RVLIFSQMSRVLDILEDYCYFREYEYCRIDGSTAHEDRINAIDDYNAPDSKKFIFLLTTR 524
RVL+F+QM+++L+ILEDY +R+Y+Y R+DGS+ DR + + D+ S F+FLL+TR
Sbjct: 1224 RVLLFAQMTKMLNILEDYMNYRKYKYLRLDGSSTIMDRRDMVRDFQHR-SDIFVFLLSTR 1282
Query: 525 AGGLGINLTTADIVVLYDSDWNPQADLQAMDRAHRIGQKKQVRVFRFVTDNSVEEKILER 584
AGGLGINLT AD V+ Y+SDWNP DLQAMDRAHR+GQ K D +VEEKIL R
Sbjct: 1283 AGGLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTK---------DETVEEKILHR 1333
Query: 585 ATQKLKLDQLVIQQGRV 601
A+QK + QLV+ G V
Sbjct: 1334 ASQKNTVQQLVMTGGHV 1350
>CE25717 [R] KOG0391 SNF2 family DNA-dependent ATPase
Length = 1933
Score = 224 bits (571), Expect = 6e-58
Identities = 121/313 (38%), Positives = 178/313 (56%), Gaps = 9/313 (2%)
Query: 134 PAYVNGQLRPYQIQGLNWLVALHKNQLAGILADEMGLGKTLQTIAFLGYLRYIEKKNGPF 193
P + GQLR YQ+ GL+W+V L++ L GILADEMGLGKT+QTI+ L ++ E GP
Sbjct: 590 PFLIRGQLREYQMVGLDWMVTLYEKNLNGILADEMGLGKTIQTISLLAHMACSESIWGPH 649
Query: 194 LVIAPKSTLNNWLREINRWTPEVSAFILQGDKEERSKLCHDKLLACDFDICVASYEIIIR 253
L++ P S + NW E +W P + G +ER++ + F +C+ SY+ + +
Sbjct: 650 LIVVPTSVILNWEMEFKKWCPALKILTYFGTAKERAEKRKGWMKPNCFHVCITSYKTVTQ 709
Query: 254 EKASFKKIDWEYVVIDEAHRIKNEESMLSQVLREFSSRNRLLITGTPLQNNLHELWALLN 313
+ +FK+ W+Y+++DEA IKN +S Q L +R RLL+TGTPLQN+L ELW+L++
Sbjct: 710 DIRAFKQRAWQYLILDEAQNIKNWKSQRWQALLNVRARRRLLLTGTPLQNSLMELWSLMH 769
Query: 314 FLLPDIFA------DSATXXXXXXXXXXXXXXXXVVKQLHTVLSPFLLRRIKNDVEGSLL 367
FL+P IF+ D + ++ +LH VL PF+LRR+K +VE L
Sbjct: 770 FLMPTIFSSHDDFKDWFSNPLTGMMEGNMEFNAPLIGRLHKVLRPFILRRLKKEVEKQLP 829
Query: 368 PKKELNVYVGMSSMQKKWYKQILEKDIDAVNGSNGQKESKTRLLNIVMQLRKCCNHPYLF 427
K E V +S Q+ Y + + N +G S +LNIVMQLRKCCNHP LF
Sbjct: 830 EKTEHIVNCSLSKRQRYLYDDFMSRRSTKENLKSGNMMS---VLNIVMQLRKCCNHPNLF 886
Query: 428 DGAEPGPPYTTDE 440
+ P+ ++
Sbjct: 887 EPRPVVAPFVVEK 899
Score = 143 bits (360), Expect = 2e-33
Identities = 67/138 (48%), Positives = 97/138 (69%), Gaps = 1/138 (0%)
Query: 465 RVLIFSQMSRVLDILEDYCYFREYEYCRIDGSTAHEDRINAIDDYNAPDSKKFIFLLTTR 524
R LIF+QMS++LD+L+ + Y+Y R+DG+T E R ++ +NA D K F F+L+TR
Sbjct: 1257 RCLIFTQMSKMLDVLQTFLSHHGYQYFRLDGTTGVEQRQAMMERFNA-DPKVFCFILSTR 1315
Query: 525 AGGLGINLTTADIVVLYDSDWNPQADLQAMDRAHRIGQKKQVRVFRFVTDNSVEEKILER 584
+GG+G+NLT AD V+ YDSDWNP D QA DR HRIGQ + V ++R +++ ++EE IL +
Sbjct: 1316 SGGVGVNLTGADTVIFYDSDWNPTMDAQAQDRCHRIGQTRNVSIYRLISERTIEENILRK 1375
Query: 585 ATQKLKLDQLVIQQGRVT 602
ATQK +L +L I + T
Sbjct: 1376 ATQKRRLGELAIDEAGFT 1393
>Hs5730067 [R] KOG0391 SNF2 family DNA-dependent ATPase
Length = 2971
Score = 221 bits (563), Expect = 5e-57
Identities = 121/311 (38%), Positives = 176/311 (55%), Gaps = 9/311 (2%)
Query: 134 PAYVNGQLRPYQIQGLNWLVALHKNQLAGILADEMGLGKTLQTIAFLGYLRYIEKKNGPF 193
P + GQLR YQ GL+WLV +++ +L GILADEMGLGKT+QTI+ L +L + GP
Sbjct: 414 PLLLRGQLREYQHIGLDWLVTMYEKKLNGILADEMGLGKTIQTISLLAHLACEKGNWGPH 473
Query: 194 LVIAPKSTLNNWLREINRWTPEVSAFILQGDKEERSKLCHDKLLACDFDICVASYEIIIR 253
L+I P S + NW E+ RW P G ++ER F +C+ SY+++++
Sbjct: 474 LIIVPTSVMLNWEMELKRWCPSFKILTYYGAQKERKLKRQGWTKPNAFHVCITSYKLVLQ 533
Query: 254 EKASFKKIDWEYVVIDEAHRIKNEESMLSQVLREFSSRNRLLITGTPLQNNLHELWALLN 313
+ +F++ +W Y+++DEA IKN +S Q L F+S+ RLL+TGTPLQN+L ELW+L++
Sbjct: 534 DHQAFRRKNWRYLILDEAQNIKNFKSQRWQSLLNFNSQRRLLLTGTPLQNSLMELWSLMH 593
Query: 314 FLLPDIFADSA------TXXXXXXXXXXXXXXXXVVKQLHTVLSPFLLRRIKNDVEGSLL 367
FL+P +F + +VK+LH VL PFLLRR+K DVE +
Sbjct: 594 FLMPHVFQSHREFKEWFSNPLTGMIEGSQEYNEGLVKRLHKVLRPFLLRRVKVDVEKQMP 653
Query: 368 PKKELNVYVGMSSMQKKWYKQILEKDIDAVNGSNGQKESKTRLLNIVMQLRKCCNHPYLF 427
K E + +S Q+ Y + + + G S ++NI+MQLRK CNHP LF
Sbjct: 654 KKYEHVIRCRLSKRQRCLYDDFMAQTTTKETLATGHFMS---VINILMQLRKVCNHPNLF 710
Query: 428 DGAEPGPPYTT 438
D P+ T
Sbjct: 711 DPRPVTSPFIT 721
Score = 146 bits (368), Expect = 2e-34
Identities = 70/141 (49%), Positives = 99/141 (69%), Gaps = 1/141 (0%)
Query: 462 QGSRVLIFSQMSRVLDILEDYCYFREYEYCRIDGSTAHEDRINAIDDYNAPDSKKFIFLL 521
+G RVLIF+QM+R+LD+LE + + + Y R+DGST E R ++ +NA D + F F+L
Sbjct: 1799 EGHRVLIFTQMTRMLDVLEQFLTYHGHLYLRLDGSTRVEQRQALMERFNA-DKRIFCFIL 1857
Query: 522 TTRAGGLGINLTTADIVVLYDSDWNPQADLQAMDRAHRIGQKKQVRVFRFVTDNSVEEKI 581
+TR+GG+G+NLT AD VV YDSDWNP D QA DR HRIGQ + V ++R +++ +VEE I
Sbjct: 1858 STRSGGVGVNLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIYRLISERTVEENI 1917
Query: 582 LERATQKLKLDQLVIQQGRVT 602
L++A QK L + I+ G T
Sbjct: 1918 LKKANQKRMLGDMAIEGGNFT 1938
>At3g54280 [K] KOG0392 SNF2 family DNA-dependent ATPase domain-containing
protein
Length = 2049
Score = 220 bits (561), Expect = 8e-57
Identities = 149/532 (28%), Positives = 241/532 (45%), Gaps = 80/532 (15%)
Query: 140 QLRPYQIQGLNWLVALHKNQLAGILADEMGLGKTLQTIAFLGYLRYIEKKNG-------P 192
QLR YQ +G+NWL L + +L GIL D+MGLGKTLQ A + E++ P
Sbjct: 1443 QLRRYQQEGINWLGFLKRFKLHGILCDDMGLGKTLQASAIVAS-DAAERRGSTDELDVFP 1501
Query: 193 FLVIAPKSTLNNWLREINRWTPEVSAFILQ--GDKEERSKLCHDKLLACDFDICVASYEI 250
+++ P + + +W EI ++ +LQ G ++R L + ++ + SY++
Sbjct: 1502 SIIVCPSTLVGHWAFEIEKYIDLSLLSVLQYVGSAQDRVSLREQ---FNNHNVIITSYDV 1558
Query: 251 IIREKASFKKIDWEYVVIDEAHRIKNEESMLSQVLREFSSRNRLLITGTPLQNNLHELWA 310
+ ++ + W Y ++DE H IKN +S ++ +++ +++RL+++GTP+QNN+ ELW+
Sbjct: 1559 VRKDVDYLTQFSWNYCILDEGHIIKNAKSKITAAVKQLKAQHRLILSGTPIQNNIMELWS 1618
Query: 311 LLNFLLPDIFADSATXXXXXX-----------XXXXXXXXXXVVKQLHTVLSPFLLRRIK 359
L +FL+P ++ LH + PFLLRR K
Sbjct: 1619 LFDFLMPGFLGTERQFQASYGKPLLAARDPKCSAKDAEAGVLAMEALHKQVMPFLLRRTK 1678
Query: 360 NDVEGSLLPKKELNVYVGMSSMQKKWYKQI--------------LEKDIDAVNGSNGQKE 405
+V L K + Y +S +Q K Y+Q ++ D+ N +
Sbjct: 1679 EEVLSDLPEKIIQDRYCDLSPVQLKLYEQFSGSSAKQEISSIIKVDGSADSGNADVAPTK 1738
Query: 406 SKTRLLNIVMQLRKCCNHPYLFDGAEPGPPYTTD-------------------------- 439
+ T + + L K C+HP L G + P +D
Sbjct: 1739 ASTHVFQALQYLLKLCSHPLLVLGDKVTEPVASDLAAMINGCSDIITELHKVQHSPKLVA 1798
Query: 440 -EHLVYNSAXXXXXXXXXXXXXEQGSRVLIFSQMSRVLDILED---YCYFREYEYCRIDG 495
+ ++ RVLIF+Q +LDI+E + + Y R+DG
Sbjct: 1799 LQEILEECGIGSDASSSDGTLSVGQHRVLIFAQHKALLDIIEKDLFQAHMKSVTYMRLDG 1858
Query: 496 STAHEDRINAIDDYNAPDSKKFIFLLTTRAGGLGINLTTADIVVLYDSDWNPQAD----- 550
S E R + +N+ D + LLTT GGLG+NLT+AD +V + DWNP D
Sbjct: 1859 SVVPEKRFEIVKAFNS-DPTIDVLLLTTHVGGLGLNLTSADTLVFMEHDWNPMRDHQFAN 1917
Query: 551 ------LQAMDRAHRIGQKKQVRVFRFVTDNSVEEKILERATQKLKLDQLVI 596
QAMDRAHR+GQK+ V V R + ++EEK++ K+ + VI
Sbjct: 1918 IELNKLWQAMDRAHRLGQKRVVNVHRLIMRGTLEEKVMSLQKFKVSVANTVI 1969
>YDR334w [R] KOG0391 SNF2 family DNA-dependent ATPase
Length = 1514
Score = 218 bits (556), Expect = 3e-56
Identities = 122/315 (38%), Positives = 169/315 (52%), Gaps = 23/315 (7%)
Query: 134 PAYVNGQLRPYQIQGLNWLVALHKNQLAGILADEMGLGKTLQTIAFLGYLRYIEKKNGPF 193
P+ + G LR YQ QGLNWL +L+ N GILADEMGLGKT+QTI+ L YL ++ GP
Sbjct: 689 PSLLRGNLRTYQKQGLNWLASLYNNHTNGILADEMGLGKTIQTISLLAYLACEKENWGPH 748
Query: 194 LVIAPKSTLNNWLREINRWTPEVSAFILQGDKEERSKLCHDKLLACDFDICVASYEIIIR 253
L++ P S L NW E R+ P G ++R + F +C+ SY+++++
Sbjct: 749 LIVVPTSVLLNWEMEFKRFAPGFKVLTYYGSPQQRKEKRKGWNKPDAFHVCIVSYQLVVQ 808
Query: 254 EKASFKKIDWEYVVIDEAHRIKNEESMLSQVLREFSSRNRLLITGTPLQNNLHELWALLN 313
++ SFK+ W+Y+V+DEAH IKN S Q L F+++ RLL+TGTPLQNNL ELW+LL
Sbjct: 809 DQHSFKRKRWQYMVLDEAHNIKNFRSTRWQALLNFNTQRRLLLTGTPLQNNLAELWSLLY 868
Query: 314 FLLPDIFADSATXXXXXXXXX--------------------XXXXXXXVVKQLHTVLSPF 353
FL+P D V +LH VL P+
Sbjct: 869 FLMPQTVIDGKKVSGFADLDAFQQWFGRPVDKIIETGQNFGQDKETKKTVAKLHQVLRPY 928
Query: 354 LLRRIKNDVEGSLLPKKELNVYVGMSSMQKKWYKQILEKDIDAVNGSNGQKESKTRLLNI 413
LLRR+K DVE + K E VY +S Q+ Y + + ++G S ++N
Sbjct: 929 LLRRLKADVEKQMPAKYEHIVYCKLSKRQRFLYDDFMSRAQTKATLASGNFMS---IVNC 985
Query: 414 VMQLRKCCNHPYLFD 428
+MQLRK CNHP LF+
Sbjct: 986 LMQLRKVCNHPNLFE 1000
Score = 150 bits (378), Expect = 1e-35
Identities = 71/142 (50%), Positives = 102/142 (71%), Gaps = 1/142 (0%)
Query: 461 EQGSRVLIFSQMSRVLDILEDYCYFREYEYCRIDGSTAHEDRINAIDDYNAPDSKKFIFL 520
+ G R LIF+QM++VLD+LE + + Y Y R+DG+T EDR + +N DS+ +F+
Sbjct: 1260 DNGHRALIFTQMTKVLDVLEQFLNYHGYLYMRLDGATKIEDRQILTERFNT-DSRITVFI 1318
Query: 521 LTTRAGGLGINLTTADIVVLYDSDWNPQADLQAMDRAHRIGQKKQVRVFRFVTDNSVEEK 580
L++R+GGLGINLT AD V+ YDSDWNP D Q DR HRIGQ + V ++RFV+++++E
Sbjct: 1319 LSSRSGGLGINLTGADTVIFYDSDWNPAMDKQCQDRCHRIGQTRDVHIYRFVSEHTIESN 1378
Query: 581 ILERATQKLKLDQLVIQQGRVT 602
IL++A QK +LD +VIQ+G T
Sbjct: 1379 ILKKANQKRQLDNVVIQEGDFT 1400
>ECU09g1890 [L] KOG0388 SNF2 family DNA-dependent ATPase
Length = 883
Score = 218 bits (554), Expect = 5e-56
Identities = 129/403 (32%), Positives = 207/403 (51%), Gaps = 24/403 (5%)
Query: 39 KRKFDEQGTVK---RFEHLLGLSTLFRHFIERKAAKDPRFREVLDTIDXXXXXXXXXXXX 95
KR+ +E+ ++ +FE+LL + LF HFI +K E + +
Sbjct: 170 KREMEEREELRQKRKFEYLLSQTELFSHFILKKNRCGLSSAEEAERKEIGAGEYNGMKGY 229
Query: 96 HTDARRRKTXXXXXXXXXXXXXXXXXXXXDVDFQFRESPAYVNGQLRPYQIQGLNWLVAL 155
+++ + ++ P+ + L+ YQ++GLNWLV+L
Sbjct: 230 EAAMLQKERLREFGAERSTKKFKEGGEVGETTTRYVPQPSILKCTLKEYQLRGLNWLVSL 289
Query: 156 HKNQLAGILADEMGLGKTLQTIAFLGYLRYIEKKNGPFLVIAPKSTLNNWLREINRWTPE 215
+ + GILAD+MGLGKT+Q+I+ L +L E+ GPFLV+ STL+NW +E R+ P
Sbjct: 290 YDKGINGILADDMGLGKTVQSISLLAHLYETEEVPGPFLVVTISSTLDNWAQEFARFLPS 349
Query: 216 VSAFILQGDKEERSKLCHDKLLACDFDICVASYEIIIREKASFKKIDWEYVVIDEAHRIK 275
G ER +L K + D+ + +Y+ + ++ KKI W+Y+++DEA IK
Sbjct: 350 FRVCRFSGSPSERKEL---KKRFKNSDVVITTYQTAVSDEKMLKKIKWQYMILDEAQAIK 406
Query: 276 NEESMLSQVLREFSSRNRLLITGTPLQNNLHELWALLNFLLPDI------FADSATXXXX 329
+ S + L F +RNRLL+TGTP+QN++ ELWALL+F++P + F+D +
Sbjct: 407 SSMSRRWKTLLSFKARNRLLLTGTPIQNSMQELWALLHFIMPTLFDSLNEFSDWFSKEIE 466
Query: 330 XXXXXXXXXXXXVVKQLHTVLSPFLLRRIKNDVEGSLLPKKELNVYVGMSSMQKKWYKQI 389
+++LH +L PF+LRR K+DV L K ++++Y +S QK YK+I
Sbjct: 467 TSAIMKKTVDEKSLQRLHAILKPFMLRRHKSDVIHELGQKTQIDLYCDLSYRQKVLYKEI 526
Query: 390 LEKDIDAVNGSNGQKESKTRLLNIVMQLRKCCNHPYLFDGAEP 432
+ S + N++MQL+K CNHP LF EP
Sbjct: 527 T------------RSCSSMEMENLLMQLKKVCNHPDLFKKLEP 557
Score = 152 bits (384), Expect = 3e-36
Identities = 75/135 (55%), Positives = 99/135 (72%), Gaps = 2/135 (1%)
Query: 462 QGSRVLIFSQMSRVLDILEDYCYFREYEYCRIDGSTAHEDRINAIDDYNAPDSKKFIFLL 521
+G R+L++ QM+R++D++EDY + Y Y R+DGS R I D+ A D KFIFLL
Sbjct: 741 EGHRLLMYFQMTRMIDLIEDYLVRKGYTYLRLDGSLKASARAEVIRDWQASD--KFIFLL 798
Query: 522 TTRAGGLGINLTTADIVVLYDSDWNPQADLQAMDRAHRIGQKKQVRVFRFVTDNSVEEKI 581
+TRAGGLGINLT AD VV YDSDWNP AD QAMDRAHR+GQ + V V+R +T +VEEK+
Sbjct: 799 STRAGGLGINLTAADTVVFYDSDWNPTADQQAMDRAHRLGQTRDVTVYRLITRGTVEEKV 858
Query: 582 LERATQKLKLDQLVI 596
LE A +K ++ ++VI
Sbjct: 859 LESANRKDEIQKMVI 873
>At3g12810 [R] KOG0391 SNF2 family DNA-dependent ATPase
Length = 1048
Score = 215 bits (547), Expect = 3e-55
Identities = 116/302 (38%), Positives = 170/302 (55%), Gaps = 9/302 (2%)
Query: 134 PAYVNGQLRPYQIQGLNWLVALHKNQLAGILADEMGLGKTLQTIAFLGYLRYIEKKNGPF 193
P + LR YQ GL+WLV +++ +L GILADEMGLGKT+ TIA L +L + GP
Sbjct: 114 PFLLKHSLREYQHIGLDWLVTMYEKKLNGILADEMGLGKTIMTIALLAHLACDKGIWGPH 173
Query: 194 LVIAPKSTLNNWLREINRWTPEVSAFILQGDKEERSKLCHDKLLACDFDICVASYEIIIR 253
L++ P S + NW E +W P G +ER + F +C+ +Y ++I+
Sbjct: 174 LIVVPTSVMLNWETEFLKWCPAFKILTYFGSAKERKLKRQGWMKLNSFHVCITTYRLVIQ 233
Query: 254 EKASFKKIDWEYVVIDEAHRIKNEESMLSQVLREFSSRNRLLITGTPLQNNLHELWALLN 313
+ FK+ W+Y+++DEAH IKN +S Q L F+S+ R+L+TGTPLQN+L ELW+L++
Sbjct: 234 DSKMFKRKKWKYLILDEAHLIKNWKSQRWQTLLNFNSKRRILLTGTPLQNDLMELWSLMH 293
Query: 314 FLLPDI------FADSATXXXXXXXXXXXXXXXXVVKQLHTVLSPFLLRRIKNDVEGSLL 367
FL+P + F D V+ +LH VL PFLLRR+K DVE L
Sbjct: 294 FLMPHVFQSHQEFKDWFCNPIAGMVEGQEKINKEVIDRLHNVLRPFLLRRLKRDVEKQLP 353
Query: 368 PKKELNVYVGMSSMQKKWYKQILEKDIDAVNGSNGQKESKTRLLNIVMQLRKCCNHPYLF 427
K E ++ +S Q+ Y+ + ++G S +++I+MQLRK CNHP LF
Sbjct: 354 SKHEHVIFCRLSKRQRNLYEDFIASTETQATLTSG---SFFGMISIIMQLRKVCNHPDLF 410
Query: 428 DG 429
+G
Sbjct: 411 EG 412
Score = 145 bits (367), Expect = 3e-34
Identities = 69/137 (50%), Positives = 98/137 (71%), Gaps = 1/137 (0%)
Query: 463 GSRVLIFSQMSRVLDILEDYCYFREYEYCRIDGSTAHEDRINAIDDYNAPDSKKFIFLLT 522
G R LIF+QM+++LD+LE + Y Y R+DGST E+R + +N + K F+F+L+
Sbjct: 676 GHRALIFTQMTKMLDVLEAFINLYGYTYMRLDGSTPPEERQTLMQRFNT-NPKIFLFILS 734
Query: 523 TRAGGLGINLTTADIVVLYDSDWNPQADLQAMDRAHRIGQKKQVRVFRFVTDNSVEEKIL 582
TR+GG+GINL AD V+ YDSDWNP D QA DR HRIGQ ++V ++R ++++++EE IL
Sbjct: 735 TRSGGVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENIL 794
Query: 583 ERATQKLKLDQLVIQQG 599
++A QK LD LVIQ G
Sbjct: 795 KKANQKRVLDNLVIQNG 811
>YGL150c [L] KOG0388 SNF2 family DNA-dependent ATPase
Length = 1489
Score = 211 bits (537), Expect = 5e-54
Identities = 120/332 (36%), Positives = 184/332 (55%), Gaps = 27/332 (8%)
Query: 132 ESPAYVNGQLRPYQIQGLNWLVALHKNQLAGILADEMGLGKTLQTIAFLGYLRYIEKKNG 191
E P + L+ YQ++GLNWL L+ + GILADEMGLGKT+Q+I+ L +L G
Sbjct: 697 EQPKILACTLKEYQLKGLNWLANLYDQGINGILADEMGLGKTVQSISVLAHLAENHNIWG 756
Query: 192 PFLVIAPKSTLNNWLREINRWTPEVSAFILQGDKEERS---KLCHDKLLA----CDFDIC 244
PFLV+ P STL+NW+ EI+++ P+ G+ +R K K L F +
Sbjct: 757 PFLVVTPASTLHNWVNEISKFLPQFKILPYWGNANDRKVLRKFWDRKNLRYNKNAPFHVM 816
Query: 245 VASYEIIIREKASFKKIDWEYVVIDEAHRIKNEESMLSQVLREFSSRNRLLITGTPLQNN 304
V SY++++ + +K+ W+Y+++DEA IK+ +S + L F RNRLL+TGTP+QN+
Sbjct: 817 VTSYQMVVTDANYLQKMKWQYMILDEAQAIKSSQSSRWKNLLSFHCRNRLLLTGTPIQNS 876
Query: 305 LHELWALLNFLLP------DIFADSATXXXXXXXXXXXXXXXXVVKQLHTVLSPFLLRRI 358
+ ELWALL+F++P D F + + +++LH +L PF+LRR+
Sbjct: 877 MQELWALLHFIMPSLFDSHDEFNEWFSKDIESHAEANTKLNQQQLRRLHMILKPFMLRRV 936
Query: 359 KNDVEGSLLPKKELNVYVGMSSMQKKWYKQILEKDI-------------DAVNGSNGQKE 405
K +V+ L K E++V ++ Q K Y Q+L+ I D+ + S
Sbjct: 937 KKNVQSELGDKIEIDVLCDLTQRQAKLY-QVLKSQISTNYDAIENAATNDSTSNSASNSG 995
Query: 406 SKTRLLNIVMQLRKCCNHPYLFDGAEPGPPYT 437
S L+N VMQ RK CNHP LF+ A+ P++
Sbjct: 996 SDQNLINAVMQFRKVCNHPDLFERADVDSPFS 1027
Score = 149 bits (375), Expect = 3e-35
Identities = 68/136 (50%), Positives = 104/136 (76%), Gaps = 1/136 (0%)
Query: 462 QGSRVLIFSQMSRVLDILEDYCYFREYEYCRIDGSTAHEDRINAIDDYNAPDSKKFIFLL 521
+G RVLI+ QM++++D++E+Y +R+Y + R+DGS+ EDR + + D+ + + F+FLL
Sbjct: 1314 EGHRVLIYFQMTKMMDLMEEYLTYRQYNHIRLDGSSKLEDRRDLVHDWQT-NPEIFVFLL 1372
Query: 522 TTRAGGLGINLTTADIVVLYDSDWNPQADLQAMDRAHRIGQKKQVRVFRFVTDNSVEEKI 581
+TRAGGLGINLT AD V+ YDSDWNP D QAMDRAHR+GQ +QV V+R + ++EE++
Sbjct: 1373 STRAGGLGINLTAADTVIFYDSDWNPTIDSQAMDRAHRLGQTRQVTVYRLLVRGTIEERM 1432
Query: 582 LERATQKLKLDQLVIQ 597
+RA QK ++ Q+V++
Sbjct: 1433 RDRAKQKEQVQQVVME 1448
>YGL163c [L] KOG0390 DNA repair protein SNF2 family
Length = 898
Score = 209 bits (531), Expect = 2e-53
Identities = 145/488 (29%), Positives = 234/488 (47%), Gaps = 68/488 (13%)
Query: 163 ILADEMGLGKTLQTIAFLGYL--------RYIEKKNGPFLVIAPKSTLNNWLREINRWTP 214
I+ADEMGLGKTLQ IA + L R I+K +++ P S +NNW E+ +W
Sbjct: 332 IMADEMGLGKTLQCIALMWTLLRQGPQGKRLIDK----CIIVCPSSLVNNWANELIKWLG 387
Query: 215 E--VSAFILQGDKEER-------SKLCHDKLLACDFDIC----VASYEIIIREKASFKKI 261
++ + G K S+ H A +I + SYE + R K
Sbjct: 388 PNTLTPLAVDGKKSSMGGGNTTVSQAIHAWAQAQGRNIVKPVLIISYETLRRNVDQLKNC 447
Query: 262 DWEYVVIDEAHRIKNEESMLSQVLREFSSRNRLLITGTPLQNNLHELWALLNFLLPDIFA 321
+ ++ DE HR+KN +S+ L S R++++GTP+QN+L E +ALL+F P +
Sbjct: 448 NVGLMLADEGHRLKNGDSLTFTALDSISCPRRVILSGTPIQNDLSEYFALLSFSNPGLLG 507
Query: 322 DSATXXX-----------XXXXXXXXXXXXXVVKQLHTVLSPFLLRRIKNDVEGSLLP-K 369
A +++L T++S F++RR ND+ LP K
Sbjct: 508 SRAEFRKNFENPILRGRDADATDKEITKGEAQLQKLSTIVSKFIIRRT-NDILAKYLPCK 566
Query: 370 KELNVYVGMSSMQKKWYKQILE-----KDIDAVNGSNGQKESKTRLLNIVMQLRKCCNHP 424
E ++V + +Q + Y ++++ K + V GS L + L+K CNHP
Sbjct: 567 YEHVIFVNLKPLQNELYNKLIKSREVKKVVKGVGGSQP--------LRAIGILKKLCNHP 618
Query: 425 YL------FDGAE----------PGPPYTTDEHLVYNSAXXXXXXXXXXXXXEQGSRVLI 468
L FD + PG D Y++ E ++++
Sbjct: 619 NLLNFEDEFDDEDDLELPDDYNMPGSK-ARDVQTKYSAKFSILERFLHKIKTESDDKIVL 677
Query: 469 FSQMSRVLDILEDYCYFREYEYCRIDGSTAHEDRINAIDDYNAPDSKKFIFLLTTRAGGL 528
S ++ LD++E C ++ Y R+DG+ + R +D +N P+ ++FIFLL+++AGG
Sbjct: 678 ISNYTQTLDLIEKMCRYKHYSAVRLDGTMSINKRQKLVDRFNDPEGQEFIFLLSSKAGGC 737
Query: 529 GINLTTADIVVLYDSDWNPQADLQAMDRAHRIGQKKQVRVFRFVTDNSVEEKILERATQK 588
GINL A+ ++L D DWNP AD QA+ R R GQKK ++RF++ ++EEKI +R + K
Sbjct: 738 GINLIGANRLILMDPDWNPAADQQALARVWRDGQKKDCFIYRFISTGTIEEKIFQRQSMK 797
Query: 589 LKLDQLVI 596
+ L V+
Sbjct: 798 MSLSSCVV 805
>Hs6912622_2 [L] KOG0390 DNA repair protein SNF2 family
Length = 808
Score = 208 bits (529), Expect = 4e-53
Identities = 148/512 (28%), Positives = 244/512 (46%), Gaps = 60/512 (11%)
Query: 136 YVNGQLRPYQIQGLNWL----VALHKNQLAG-ILADEMGLGKTLQTIAFLGYLRYIEKKN 190
Y+ LRP+Q +G+ +L + + N G ILADEMGLGKTLQ I+ + L+
Sbjct: 189 YLVYHLRPHQKEGIIFLYECVMGMRMNGRCGAILADEMGLGKTLQCISLIWTLQC----Q 244
Query: 191 GPF---------LVIAPKSTLNNWLREINRWTPEVSAFILQGDKEERSKLCHDKLLACDF 241
GP+ L++ P S +NNW +E +W I D++ + + + + + +
Sbjct: 245 GPYGGKPVIKKTLIVTPGSLVNNWKKEFQKWLGSERIKIFTVDQDHKVE---EFIKSIFY 301
Query: 242 DICVASYEIIIREKASFKKIDWEYVVIDEAHRIKNEESMLSQVLREFSSRNRLLITGTPL 301
+ + SYE+++R K I ++ ++ DE HR+KN + L S R+++TGTP+
Sbjct: 302 SVLIISYEMLLRSLDQIKNIKFDLLICDEGHRLKNSAIKTTTALISLSCEKRIILTGTPI 361
Query: 302 QNNLHELWALLNFLLPDIFADSATXXXXXXXXXXXXXXXXVVKQ-----------LHTVL 350
QN+L E +AL++F+ P I ++ ++ L +
Sbjct: 362 QNDLQEFFALIDFVNPGILGSLSSYRKIYEEPIILSREPSASEEEKELGERRAAELTCLT 421
Query: 351 SPFLLRRIKNDVEGSLLPKKELNVYVGMSSMQKKWYKQILEKDIDAVNGSNGQKESKTRL 410
F+LRR + + L PK E V+ ++Q + Y+++L + G E+ L
Sbjct: 422 GLFILRRTQEIINKYLPPKIENVVFCRPGALQIELYRKLLNSQVVRFC-LQGLLENSPHL 480
Query: 411 LNIVMQLRKCCNHP-YLFDGAEPGPPYTT----DEHLVYN---SAXXXXXXXXXXXXXEQ 462
+ + L+K CNHP LF+ + +T +E +Y S E
Sbjct: 481 I-CIGALKKLCNHPCLLFNSIKEKECSSTCDKNEEKSLYKGLLSVFPADYNPLLFTEKES 539
Query: 463 GS------------------RVLIFSQMSRVLDILEDYCYFREYEYCRIDGSTAHEDRIN 504
G +V++ S ++ L+IL++ C Y Y R+DG T R
Sbjct: 540 GKLQVLSKLLAVIHELRPTEKVVLVSNYTQTLNILQEVCKRHGYAYTRLDGQTPISQRQQ 599
Query: 505 AIDDYNAPDSKKFIFLLTTRAGGLGINLTTADIVVLYDSDWNPQADLQAMDRAHRIGQKK 564
+D +N+ S FIFLL+++AGG+G+NL ++LYD DWNP D+QAM R R GQK
Sbjct: 600 IVDGFNSQHSSFFIFLLSSKAGGVGLNLIGGSHLILYDIDWNPATDIQAMSRVWRDGQKY 659
Query: 565 QVRVFRFVTDNSVEEKILERATQKLKLDQLVI 596
V ++R +T ++EEKI +R K L V+
Sbjct: 660 PVHIYRLLTTGTIEEKIYQRQISKQGLCGAVV 691
>CE11028 [KL] KOG0387 Transcription-coupled repair protein CSB/RAD26
(contains SNF2 family DNA-dependent ATPase domain)
Length = 1785
Score = 203 bits (516), Expect = 1e-51
Identities = 141/505 (27%), Positives = 239/505 (46%), Gaps = 55/505 (10%)
Query: 135 AYVNGQLRPYQIQGLNWLVALHKNQLAGILADEMGLGKTLQTIAFLGYLRYIEKKN---- 190
A V +L +Q +G+ WL ++ GILADEMGLGKT+Q++ FL ++ + +
Sbjct: 188 AGVWNKLHKFQQEGVEWLQKKTDHRSGGILADEMGLGKTIQSVVFLRSIQETARTHYKTT 247
Query: 191 --GPFLVIAPKSTLNNWLREINRWTPEVSAFILQ-----GDKEER-----SKLCHDKLLA 238
L++ S + W++E+N+W P+ F+L G +E+ KL +
Sbjct: 248 GLDTALIVCHVSIIAQWIKELNQWFPKARVFLLHSHCSTGRQEDYVGSIFRKLQRRRKEY 307
Query: 239 CDFDICVASYEIIIREKASFKKIDWEYVVIDEAHRIKNEESMLSQVLREFSSRNRLLITG 298
D I + +Y + + K K W+ V++DE H I+NE + S +R+ + R ++TG
Sbjct: 308 PDGAIILTTYSLFTKLKKPIVKHLWQVVILDEGHYIRNENTKCSIAMRKLMTTQRFILTG 367
Query: 299 TPLQNNLHELWALLNFLLPDIFADSATXXXXXXXXX-----------XXXXXXXVVKQLH 347
TP QN L E W L++F+ P +DSAT + LH
Sbjct: 368 TPFQNRLSEFWKLVDFVHPGRLSDSATFHRNFTHIINAGANLNCSPEAAAKAYECLVALH 427
Query: 348 TVLSPFLLRRIKNDVEGSL-LPKK-ELNVYVGMSSMQKKWY---------KQILEKDIDA 396
+ P +LRR++ D + L LP+K E+ + +S Q++ Y +I+E+ + A
Sbjct: 428 IAVKPLILRRLQEDHKEVLQLPEKQEIVLSCELSKRQRRLYMEYGNSHQVNEIIERRLKA 487
Query: 397 VNGSNGQKESKTRLLNIVMQLRKCCNHPYLFDGAEPGPPYTTDEHLVYNSAXXXXXXXXX 456
G N L CNHP ++ P P + +
Sbjct: 488 FVGIN--------------HLTNICNHPGIYRSLSPASPKFGS--IKDSGKVEMTFKLFD 531
Query: 457 XXXXEQGSRVLIFSQMSRVLDILEDYCYFREYEYCRIDGSTAHEDRINAIDDYNAPDSKK 516
+RV++F+Q V+ ++E + + + + G+ + R I + S K
Sbjct: 532 DWFKSPTNRVILFTQRRTVITMMEYFLAEKGIKCVSLTGADSAAARPKIIKKFEDDVSIK 591
Query: 517 FIFLLTTRAGGLGINLTTADIVVLYDSDWNPQADLQAMDRAHRIGQKKQVRVFRFVTDNS 576
+FL+TTRAGGLG+NLT A+ V+++D DWNPQAD QA +R +R+GQ V ++R V++ +
Sbjct: 592 -VFLMTTRAGGLGLNLTCANKVIIFDPDWNPQADNQAKNRIYRMGQTNDVAIYRLVSNGT 650
Query: 577 VEEKILERATQKLKLDQLVIQQGRV 601
+E+ + QK L ++ +
Sbjct: 651 IEDLKFFKQVQKENLAARLLHNAEI 675
Score = 69.7 bits (169), Expect = 2e-11
Identities = 96/445 (21%), Positives = 172/445 (38%), Gaps = 80/445 (17%)
Query: 194 LVIAPKSTLNNWLREINRWTPEVSAFILQG----------------DKEERSKLCHDKLL 237
L++ P++ L+ W+ I F+L D +E K+ +L
Sbjct: 1100 LIVCPEAKLSEWMLAIRHQFDYARIFVLHKASTTGHETDYVEKIFQDLKETKKIPFGAVL 1159
Query: 238 ACDFDICVASYEIIIREKASFKKIDWEYVVIDEAHRIKNEESMLSQV--LREFSSRNRLL 295
F E EKA W+ V +D+ + M +Q+ +++ + NR +
Sbjct: 1160 LTTFA------EFGKHEKAIVDH-QWQLVYLDQG-LFEMTRQMRNQIEGMKKLKTPNRFI 1211
Query: 296 ITGTPLQNNLHELWALLNFLLPDIFADSATXXXXX-----------XXXXXXXXXXXVVK 344
T T +++ L ELW ++F+ P +D T +
Sbjct: 1212 FTDTSVRDRLEELWWNVDFVFPGRLSDYKTFQTNFQNVIEIGCRLDATPEEASTAYECIV 1271
Query: 345 QLHTVLSPFLLRR-IKNDVEGSL---LPKKELNVYVGMSSMQKKWYKQIL---------- 390
LH L P +L R IKN + + KKE+ ++ + K++++Q L
Sbjct: 1272 ALHVALKPLILSRLIKNPNDWFCRREISKKEVE-HIKVRIFVKQYFEQTLFFQDIICPLS 1330
Query: 391 ---------EKDIDAVNGSNGQKESKTRLLNIVMQLRKCCNHPYLFDGAEPGPPYTTDEH 441
K D V G Q + L +L C+HP + G P E
Sbjct: 1331 KRQRRCLKIYKRSDEVQGILRQSSAACVGLK---KLTDICDHPGIHKGVTP-------ET 1380
Query: 442 LVYNSAXXXXXXXXXXXXXEQ-----GSRVLIFSQMSRVLDILEDYCYFREYEYCRIDGS 496
+ S + G++V+IF+Q +V +LE + + YC +
Sbjct: 1381 KKFGSIEDSGKVRIVFQLLDMWLGTPGAKVVIFTQRRQVAVMLEHFMKQKRIAYCSFLKA 1440
Query: 497 TAHEDRINAIDDY-NAPDSKKFIFLLTTRAGGLGINLTTADIVVLYDSDWNPQADLQAMD 555
DR N ++ + N D + I L + LG+ L A+ V+++D +WNP +D++
Sbjct: 1441 KNAYDRENVVNYFENTTDVQ--ILLAPSIMFKLGMQLKKANKVIIFDPEWNPDSDVKHTR 1498
Query: 556 RAHRIGQK-KQVRVFRFVTDNSVEE 579
+ +K + V V R V++ +VE+
Sbjct: 1499 EMSFLTKKVEDVTVVRLVSEGTVED 1523
>SPAC15A10.03c [L] KOG0390 DNA repair protein SNF2 family
Length = 852
Score = 201 bits (510), Expect = 7e-51
Identities = 144/507 (28%), Positives = 233/507 (45%), Gaps = 53/507 (10%)
Query: 141 LRPYQIQGLNWLVALHKNQL-----AGILADEMGLGKTLQTIAFLGYLRYIEKKNGP--- 192
LRP+QI+G+ +L ++ I+ADEMGLGKTLQ IA L L + G
Sbjct: 264 LRPHQIEGVKFLYKCVTGRIDRCANGCIMADEMGLGKTLQCIALLWTLLKQSPQAGKPTI 323
Query: 193 --FLVIAPKSTLNNWLREINRWTPE--VSAFILQGDKEERSKLCHDKLLACDFD------ 242
++ P S + NW E+ +W + ++ FIL G ++ + + A
Sbjct: 324 EKAIITCPSSLVKNWANELVKWLGKDAITPFILDGKSSKQELIMALQQWASVHGRQVTRP 383
Query: 243 ICVASYEIIIREKASFKKIDWEYVVIDEAHRIKNEESMLSQVLREFSSRNRLLITGTPLQ 302
+ +ASYE + + ++ DE HR+KN +S+ L + + + R++++GTP+Q
Sbjct: 384 VLIASYETLRSYVEHLNNAEIGMLLCDEGHRLKNSDSLTFTALDKLNVQRRVILSGTPIQ 443
Query: 303 NNLHELWALLNFLLPDIFADSATXXX-----------XXXXXXXXXXXXXVVKQLHTVLS 351
N+L E ++LLNF P + + +L +++
Sbjct: 444 NDLSEYFSLLNFANPGLLGSRQEFRKNYEIPILKGRDADGTEKDKENGDAKLAELAKIVN 503
Query: 352 PFLLRRIKNDVEGSLLPKK-ELNVYVGMSSMQKKWYKQ-ILEKDIDAVNGSNGQKESKTR 409
F++RR ND+ LP K E V+ +S Q YK I +I+ + G + K
Sbjct: 504 RFIIRRT-NDILSKYLPVKYEHVVFCNLSEFQLSLYKHFITSPEINKILRGTGSQPLKA- 561
Query: 410 LLNIVMQLRKCCNHPYLFDGAEP-------GPPYTTDEHLVYNSAXXXXXXXXXXXXXEQ 462
+ L+K CNHP L + E PP L E+
Sbjct: 562 ----IGLLKKICNHPDLLNLTEDLEGCEALFPPGFIPRELRGRDRNIDSSLSGKMLVLER 617
Query: 463 ---------GSRVLIFSQMSRVLDILEDYCYFREYEYCRIDGSTAHEDRINAIDDYNAPD 513
++++ S + LD+ E C R Y+ R+DG+ R +D +N P+
Sbjct: 618 MLYQIKQETDDKIVLISNYTSTLDLFEQLCRARGYKALRLDGTMNVNKRQRLVDTFNDPE 677
Query: 514 SKKFIFLLTTRAGGLGINLTTADIVVLYDSDWNPQADLQAMDRAHRIGQKKQVRVFRFVT 573
F+FLL+++AGG GINL A+ ++L+D DWNP AD QA+ R R GQKK V+RF+
Sbjct: 678 KDAFVFLLSSKAGGCGINLIGANRLILFDPDWNPAADQQALARVWRDGQKKDCFVYRFIA 737
Query: 574 DNSVEEKILERATQKLKLDQLVIQQGR 600
++EEKI +R + K L V+ + +
Sbjct: 738 TGTIEEKIFQRQSHKQSLSSCVVDEAQ 764
>Hs13376715 [K] KOG0384 Chromodomain-helicase DNA-binding protein
Length = 336
Score = 200 bits (508), Expect = 1e-50
Identities = 124/338 (36%), Positives = 182/338 (53%), Gaps = 30/338 (8%)
Query: 168 MGLGKTLQTIAFLGYLRYIEKKNGPFLVIAPKSTLNNWLREINRWTPEVSAFILQGDKEE 227
MGLGKT+Q+I FL Y + GPFL+IAP ST+ NW RE WT +++ + G
Sbjct: 1 MGLGKTIQSITFL-YEILLTGIRGPFLIIAPLSTIANWEREFRTWT-DINVVVYHGSLIS 58
Query: 228 RSKLCHDKLLACD-----------FDICVASYEIIIREKASFKKIDWEYVVIDEAHRIKN 276
R + ++ D F + ++E+I+ I+W V+IDEAHR+KN
Sbjct: 59 RQMIQQYEMYFRDSQGRIIRGAYRFQAIITTFEMILGGCGELNAIEWRCVIIDEAHRLKN 118
Query: 277 EESMLSQVLREFSSRNRLLITGTPLQNNLHELWALLNFLLPDIFADSATXXXXXXXXXXX 336
+ L + L+ + +++L+TGTPLQN + EL++LL+FL P F +T
Sbjct: 119 KNCKLLEGLKLMNLEHKVLLTGTPLQNTVEELFSLLHFLEPLRFPSESTFMQEFGDLETE 178
Query: 337 XXXXXVVKQLHTVLSPFLLRRIKNDVEGSLLPKKELNVYVGMSSMQKKWYKQILEKDIDA 396
V++L +L P +LRR+K DVE L PK+E + V ++++QKK+Y+ ILEK+
Sbjct: 179 EQ----VQKLQAILKPMMLRRLKEDVEKKLAPKEETIIEVELTNIQKKYYRAILEKNFSF 234
Query: 397 VNGSNGQKESKTRLLNIVMQLRKCCNHPYLFDGAEPG---------PPYTTDEHL---VY 444
++ GQ + L+N +M+LRKCCNHPYL GAE P +D HL +
Sbjct: 235 LSKGAGQ-TNVPNLVNTMMELRKCCNHPYLIKGAEEKILGEFRDTYNPAASDFHLQAMIQ 293
Query: 445 NSAXXXXXXXXXXXXXEQGSRVLIFSQMSRVLDILEDY 482
++ G +VLIFSQM R LDILEDY
Sbjct: 294 SAGKLVLIDKLLPKMKAGGHKVLIFSQMVRCLDILEDY 331
>At5g63950 [KL] KOG0387 Transcription-coupled repair protein CSB/RAD26
(contains SNF2 family DNA-dependent ATPase domain)
Length = 1053
Score = 196 bits (498), Expect = 2e-49
Identities = 147/486 (30%), Positives = 228/486 (46%), Gaps = 51/486 (10%)
Query: 134 PAYVNGQLRPYQIQGLNWLVALHKNQLAGILADEMGLGKTLQTIAFLGYLRYIEKKNGPF 193
P + L P+Q +GLNWL +LH GIL D+MGLGKT+Q +FL L + K
Sbjct: 370 PGKIATMLYPHQREGLNWLWSLHTQGKGGILGDDMGLGKTMQICSFLAGL-FHSKLIKRA 428
Query: 194 LVIAPKSTLNNWLREI-----NRWTPEVSAFILQGDKEERSKLCHDKLLACDFDICVASY 248
LV+APK+ L +W++E+ ++ T E + + + + K I + +Y
Sbjct: 429 LVVAPKTLLPHWMKELATVGLSQMTREYYGTSTKAREYDLHHILQGK------GILLTTY 482
Query: 249 EIIIREKASFKKID------------WEYVVIDEAHRIKNEESMLSQVLREFSSRNRLLI 296
+I+ + + D W+Y+++DE H IKN + ++ L E S +R++I
Sbjct: 483 DIVRNNTKALQGDDHYTDEDDEDGNKWDYMILDEGHLIKNPNTQRAKSLLEIPSSHRIII 542
Query: 297 TGTPLQNNLHELWALLNFLLPDIFADSATXXXXXXXXXXXXXXXXVVKQLHTVLSPFLLR 356
+GTP+QNNL L N + V K L + PF LR
Sbjct: 543 SGTPIQNNLKAL--SFNRFKQNYEHYILRGTDKNATDREQRIGSTVAKNLREHIQPFFLR 600
Query: 357 RIKNDVEGS------LLPKKELNVYVGMSSMQKKWYKQILEKDI--DAVNGSNGQKESKT 408
R+K++V G L K E+ V++ +++ Q++ Y+ L +I A +GS
Sbjct: 601 RLKSEVFGDDGATSKLSKKDEIVVWLRLTACQRQLYEAFLNSEIVLSAFDGSP------- 653
Query: 409 RLLNIVMQLRKCCNHPYLF------DGAEPGPPYTTDEHLVYNSAXXXXXXXXXXXXXEQ 462
L + L+K C+HP L D E T E Q
Sbjct: 654 --LAALTILKKICDHPLLLTKRAAEDVLEGMDSTLTQEEAGVAERLAMHIADNVDTDDFQ 711
Query: 463 GSRVLIFSQMSRVLDILEDYCYFREYEYCRIDGSTAHEDRINAIDDYNAPDSKKFIFLLT 522
I ++S ++ +L D Y + RIDG+T DR+ ++++ IFLLT
Sbjct: 712 TKNDSISCKLSFIMSLL-DSLTSNGYSFLRIDGTTKAPDRLKTVEEFQEGHVAP-IFLLT 769
Query: 523 TRAGGLGINLTTADIVVLYDSDWNPQADLQAMDRAHRIGQKKQVRVFRFVTDNSVEEKIL 582
++ GGLG+ LT AD V++ D WNP D Q++DRA+RIGQ K V V+R +T +VEEKI
Sbjct: 770 SQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQTKDVIVYRLMTSATVEEKIY 829
Query: 583 ERATQK 588
+ K
Sbjct: 830 RKQVYK 835
>At3g19210 [L] KOG0390 DNA repair protein SNF2 family
Length = 688
Score = 196 bits (498), Expect = 2e-49
Identities = 147/516 (28%), Positives = 240/516 (46%), Gaps = 73/516 (14%)
Query: 141 LRPYQIQGLNWLV----ALH--KNQLAGILADEMGLGKTLQTIAFLGYLRYIEKKNGPF- 193
LRP+Q +G+ ++ LH N ILAD+MGLGKTLQ+I L L P
Sbjct: 76 LRPHQREGVQFMFDCVSGLHGSANINGCILADDMGLGKTLQSITLLYTLLCQGFDGTPMV 135
Query: 194 ---LVIAPKSTLNNWLREINRWTPEVSAFILQGDKEERSKLCH----DKLLACD------ 240
+++ P S ++NW EI +W GD+ + LC D L D
Sbjct: 136 KKAIIVTPTSLVSNWEAEIKKWV---------GDRIQLIALCESTRDDVLSGIDSFTRPR 186
Query: 241 --FDICVASYEIIIREKASFKKID-WEYVVIDEAHRIKNEESMLSQVLREFSSRNRLLIT 297
+ + SYE + F + + + ++ DEAHR+KN++++ ++ L + + R+L++
Sbjct: 187 SALQVLIISYETFRMHSSKFCQSESCDLLICDEAHRLKNDQTLTNRALASLTCKRRVLLS 246
Query: 298 GTPLQNNLHELWALLNFLLPDIFADSATXXXXXXXXXXXXXXXXVVK-----------QL 346
GTP+QN+L E +A++NF P D+A + +L
Sbjct: 247 GTPMQNDLEEFFAMVNFTNPGSLGDAAHFRHYYEAPIICGREPTATEEEKNLAADRSAEL 306
Query: 347 HTVLSPFLLRRIKNDVEGSLLPKKELNVYVGMSSMQKKWYKQ-ILEKDIDAVNGSNGQKE 405
+ ++ F+LRR + L PK V M+++Q Y I K++ N +
Sbjct: 307 SSKVNQFILRRTNALLSNHLPPKIIEVVCCKMTTLQSTLYNHFISSKNLKRALADNAK-- 364
Query: 406 SKTRLLNIVMQLRKCCNHPYL-FDGAEPGPPYTT--DEHLVYNSAXXXXXXXXXXXXXE- 461
+T++L + L+K CNHP L +D + G P T + L + A +
Sbjct: 365 -QTKVLAYITALKKLCNHPKLIYDTIKSGNPGTVGFENCLEFFPAEMFSGRSGAWTGGDG 423
Query: 462 ----------------------QGSRVLIFSQMSRVLDILEDYCYFREYEYCRIDGSTAH 499
R+++ S ++ LD+ C R Y + R+DGST
Sbjct: 424 AWVELSGKMHVLSRLLANLRRKTDDRIVLVSNYTQTLDLFAQLCRERRYPFLRLDGSTTI 483
Query: 500 EDRINAIDDYNAPDSKKFIFLLTTRAGGLGINLTTADIVVLYDSDWNPQADLQAMDRAHR 559
R ++ N P +F FLL+++AGG G+NL A+ +VL+D DWNP D QA R R
Sbjct: 484 SKRQKLVNRLNDPTKDEFAFLLSSKAGGCGLNLIGANRLVLFDPDWNPANDKQAAARVWR 543
Query: 560 IGQKKQVRVFRFVTDNSVEEKILERATQKLKLDQLV 595
GQKK+V V+RF++ ++EEK+ +R K L +++
Sbjct: 544 DGQKKRVYVYRFLSTGTIEEKVYQRQMSKEGLQKVI 579
>Hs14767157 [K] KOG0385 Chromatin remodeling complex WSTF-ISWI small subunit
Length = 348
Score = 195 bits (496), Expect = 3e-49
Identities = 100/200 (50%), Positives = 136/200 (68%), Gaps = 7/200 (3%)
Query: 403 QKESKTRLLNIVMQLRKCCNHPYLFDGAEPGPPYTT----DEHLVYNSAXXXXXXXXXXX 458
+ E +L NI+M LRKCCNHPYL + P P T DE LV NS
Sbjct: 63 ESEVNLKLQNIMMLLRKCCNHPYLIE--YPIDPVTQEFKIDEELVTNSGKFLILDRMLPE 120
Query: 459 XXEQGSRVLIFSQMSRVLDILEDYCYFREYEYCRIDGSTAHEDRINAIDDYNAPDSKKFI 518
++G +VL+FSQM+ +LDIL DYC+ R++ + R+DGS ++ +R + +N D + FI
Sbjct: 121 LKKRGHKVLLFSQMTSMLDILMDYCHLRDFNFSRLDGSMSYSEREKNMHSFNT-DPEVFI 179
Query: 519 FLLTTRAGGLGINLTTADIVVLYDSDWNPQADLQAMDRAHRIGQKKQVRVFRFVTDNSVE 578
FL++TRAGGLGINLT AD V++YDSDWNPQ+DLQA DR HRIGQ K V V+R VT N+++
Sbjct: 180 FLVSTRAGGLGINLTAADTVIIYDSDWNPQSDLQAQDRCHRIGQTKPVVVYRLVTANTID 239
Query: 579 EKILERATQKLKLDQLVIQQ 598
+KI+ERA K KL++L+I +
Sbjct: 240 QKIVERAAAKRKLEKLIIHK 259
>CE15856 [K] KOG0392 SNF2 family DNA-dependent ATPase domain-containing
protein
Length = 1529
Score = 194 bits (494), Expect = 5e-49
Identities = 140/497 (28%), Positives = 230/497 (46%), Gaps = 63/497 (12%)
Query: 141 LRPYQIQGLNWLVALHKNQLAGILADEMGLGKTLQTIAFLGYLRYIEKKNGPF----LVI 196
LR YQ++G+ W+ L L GILAD+MGLGKTLQT+ + L + F L++
Sbjct: 982 LREYQLEGITWIRFLRTYGLHGILADDMGLGKTLQTMCSIA-LSVDRDEMSEFHRCSLIV 1040
Query: 197 APKSTLNNWLREINRWTPEVSAFILQGDKEERSKLCHDKLLACDFDICVASYEIIIREKA 256
P++ +++W E NR+ P+ + + CH +ICV +Y+ + + A
Sbjct: 1041 CPRTLVDHWCLEWNRFFPQ------RVPASKNLTRCHGA------EICVIAYDEL--KTA 1086
Query: 257 SFKKIDWEYVVIDEAHRIKNEESMLSQVLREFSSRNRLLITGTPLQNNLHELWALLNFLL 316
W Y+V+DE H ++N + + + ++RL+++GTP+QN+ +LW+L +L+
Sbjct: 1087 YMMDRVWNYIVLDEGHVMRNSKLRAWKFASQLVGKSRLILSGTPVQNSPADLWSLFAWLM 1146
Query: 317 PDIFADSATXXXX-----------XXXXXXXXXXXXVVKQLHTVLSPFLLRRIKNDVEGS 365
P + QLH ++ PF++RR+K +V
Sbjct: 1147 PGYLGSEKQFRSQFLKKIMKCRLPKANEADLKAGSAAISQLHKLVLPFVMRRLKTEVLKE 1206
Query: 366 LLPKKELNVYVGMSSMQKKWYKQILEKDIDAVNGSNGQKESKTRLLNIVMQLRKCCNHPY 425
L K + ++ QK+ Y+ ++++ ++ Q++ L ++ LRK +H
Sbjct: 1207 LPEKNVQDYECELTEDQKEIYRFVVDR------CTSSQEDVGLSSLVTLITLRKLTDHTK 1260
Query: 426 LFDG--AEPG-PPYTTDEHLVYNSAXXXXXX-------------------XXXXXXXEQG 463
L A+ G P Y + L S G
Sbjct: 1261 LVHDTLAKIGAPQYILSKALAAKSGKMEALKQLLIECEICKNPDEEVEQPEDLGGLVASG 1320
Query: 464 SRVLIFSQMSRVLDILEDYCYFREY----EYCRIDGSTAHEDRINAIDDYNAPDSKKFIF 519
R LIF Q ++ D E+ + +DGS DR+ ++ +N D +
Sbjct: 1321 HRALIFCQWKTSAKLVSDALKSGEFGSVVSHLVLDGSVPAGDRMKMVNRFN-EDKTIDVL 1379
Query: 520 LLTTRAGGLGINLTTADIVVLYDSDWNPQADLQAMDRAHRIGQKKQVRVFRFVTDNSVEE 579
+LTT GG+G+NLT AD V+ D DWNP DLQA+DRAHR+GQ + V V+R +T +VEE
Sbjct: 1380 ILTTHVGGVGLNLTGADTVIFLDHDWNPMKDLQAIDRAHRLGQTRNVNVYRLITQGTVEE 1439
Query: 580 KILERATQKLKLDQLVI 596
K++ A KL Q +I
Sbjct: 1440 KVMSLAKFKLNTAQALI 1456
>CE25143 [L] KOG0390 DNA repair protein SNF2 family
Length = 818
Score = 194 bits (493), Expect = 6e-49
Identities = 141/504 (27%), Positives = 229/504 (44%), Gaps = 50/504 (9%)
Query: 141 LRPYQIQGLNWL----VALHKNQLAG-ILADEMGLGKTLQTIAFLGYLRYIEKKNGPF-- 193
LRP+Q G+ ++ ++ + G I+ADEMGLGKTLQ I+ L L P
Sbjct: 202 LRPHQRDGVKFMWDCVTGINIPEFHGCIMADEMGLGKTLQCISLLWTLLRQSPDACPTVS 261
Query: 194 --LVIAPKSTLNNWLREINRWT-PEVSAFILQGDKEERSKLCHDKLLA-----CDFDICV 245
+++ P S + NW +EI +W ++A + K E+ C + +A C + +
Sbjct: 262 KSIIVCPSSLVKNWDKEIKKWLGTRLNAMPVDSGKREQIIACLNSFMADSKMRCAIPVLI 321
Query: 246 ASYEIIIREKASFKKIDWEYVVIDEAHRIKNEESMLSQVLREFSSRNRLLITGTPLQNNL 305
SYE D V+ DE HR+KN E++ Q L R+LI+GTP+QN+L
Sbjct: 322 ISYETFRLYANILHSGDVGIVICDEGHRLKNSENLTYQALSGLKCARRVLISGTPIQNDL 381
Query: 306 HELWALLNFLLPDIFADSATXXXXXXXXXXXXXXXXV-----------VKQLHTVLSPFL 354
E ++L+NF+ P + ++ K++ +++ +
Sbjct: 382 LEYFSLVNFVNPGLLGTASEFRKKFENAILKGRDADASSEDQKKGEEKTKEMISLVEKCI 441
Query: 355 LRRIKNDVEGSLLPKKELNVYVGMSSMQKKWYKQILE--KDIDAVNGSNGQKESKTRLLN 412
+RR + L K E + S++Q+ Y +++E K V G S L+
Sbjct: 442 IRRTSALLTKYLPVKYEHIICCKNSTLQETLYNKLIECEKQNRIVEKDKGATASA---LS 498
Query: 413 IVMQLRKCCNHPYLFDGAEPGP-----------------PYTTDEHLVYNSAXXXXXXXX 455
+ L+K CNHPYL P P + D ++
Sbjct: 499 FITHLKKLCNHPYLVYDEFQKPDNRFRNKCLSIFPESFNPKSFDPS--FSGKMKVLDYIL 556
Query: 456 XXXXXEQGSRVLIFSQMSRVLDILEDYCYFREYEYCRIDGSTAHEDRINAIDDYNAPDSK 515
+ ++ S ++ +D + C R Y++ R+DGS + + R +D +N P S
Sbjct: 557 AVTRKTTDDKFVLVSNYTQTIDQFMELCKLRGYDFVRLDGSMSIKQRSKIVDTFNDPAST 616
Query: 516 KFIFLLTTRAGGLGINLTTADIVVLYDSDWNPQADLQAMDRAHRIGQKKQVRVFRFVTDN 575
F FLL+++AGG G+NL A+ +V++D DWNP D QAM R R GQKK ++R +
Sbjct: 617 IFCFLLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRDGQKKMCFIYRLLATG 676
Query: 576 SVEEKILERATQKLKLDQLVIQQG 599
S+EEK+ +R T K L V+ G
Sbjct: 677 SIEEKMFQRQTHKKALSSCVVDAG 700
>Hs4506397 [L] KOG0390 DNA repair protein SNF2 family
Length = 747
Score = 192 bits (489), Expect = 2e-48
Identities = 137/498 (27%), Positives = 235/498 (46%), Gaps = 42/498 (8%)
Query: 141 LRPYQIQGLNWL-VALHKNQLAG----ILADEMGLGKTLQTIAFLGYLRYIEKKNGPFL- 194
LRP+Q +G+ +L + ++ G I+ADEMGLGKTLQ I + L + P +
Sbjct: 153 LRPHQREGVKFLWECVTSRRIPGSHGCIMADEMGLGKTLQCITLMWTLLRQSPECKPEID 212
Query: 195 ---VIAPKSTLNNWLREINRWTP-EVSAFILQGDKEER-----SKLCHDKLLACDFDICV 245
V++P S + NW E+ +W + + G ++ + + I +
Sbjct: 213 KAVVVSPSSLVKNWYNEVGKWLGGRIQPLAIDGGSKDEIDQKLEGFMNQRGARVSSPILI 272
Query: 246 ASYEIIIREKASFKKIDWEYVVIDEAHRIKNEESMLSQVLREFSSRNRLLITGTPLQNNL 305
SYE +K V+ DE HR+KN E+ Q L ++ R+LI+GTP+QN+L
Sbjct: 273 ISYETFRLHVGVLQKGSVGLVICDEGHRLKNSENQTYQALDSLNTSRRVLISGTPIQNDL 332
Query: 306 HELWALLNFLLPDIFADS-----------ATXXXXXXXXXXXXXXXXVVKQLHTVLSPFL 354
E ++L++F+ I + +++L ++++ L
Sbjct: 333 LEYFSLVHFVNSGILGTAHEFKKHFELPILKGRDAAASEADRQLGEERLRELTSIVNRCL 392
Query: 355 LRRIKNDVEGSLLPKKELNVYVGMSSMQKKWYKQILEKDIDAVNGSNGQKESKTRLLNIV 414
+RR + + L K E V ++ +Q + YK+ L + A G+ + L+ +
Sbjct: 393 IRRTSDILSKYLPVKIEQVVCCRLTPLQTELYKRFLRQAKPAEELLEGKMSVSS--LSSI 450
Query: 415 MQLRKCCNHPYL-----------FDGA-EPGPPYTTDEHLV--YNSAXXXXXXXXXXXXX 460
L+K CNHP L F GA + PP + + L +
Sbjct: 451 TSLKKLCNHPALIYDKCVEEEDGFVGALDLFPPGYSSKALEPQLSGKMLVLDYILAVTRS 510
Query: 461 EQGSRVLIFSQMSRVLDILEDYCYFREYEYCRIDGSTAHEDRINAIDDYNAPDSKKFIFL 520
+V++ S ++ LD+ E C R Y Y R+DG+ + + R ++ +N+P S F+F+
Sbjct: 511 RSSDKVVLVSNYTQTLDLFEKLCRARRYLYVRLDGTMSIKKRAKVVERFNSPSSPDFVFM 570
Query: 521 LTTRAGGLGINLTTADIVVLYDSDWNPQADLQAMDRAHRIGQKKQVRVFRFVTDNSVEEK 580
L+++AGG G+NL A+ +V++D DWNP D QAM R R GQKK ++R ++ ++EEK
Sbjct: 571 LSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSAGTIEEK 630
Query: 581 ILERATQKLKLDQLVIQQ 598
I +R + K L V+ +
Sbjct: 631 IFQRQSHKKALSSCVVDE 648
>7295868 [L] KOG0390 DNA repair protein SNF2 family
Length = 784
Score = 191 bits (486), Expect = 4e-48
Identities = 135/499 (27%), Positives = 235/499 (47%), Gaps = 48/499 (9%)
Query: 141 LRPYQIQGLNWLVALHKNQLAG----ILADEMGLGKTLQTIAFLGYLRYIEKKNGP---- 192
LRP+Q +G+ ++ + + I+ADEMGLGKTLQ + + L + GP
Sbjct: 156 LRPHQREGVRFMYECVEGKRGNFNGCIMADEMGLGKTLQCVTLVWTLL----RQGPECKP 211
Query: 193 ----FLVIAPKSTLNNWLREINRWTP-EVSAFILQGDKEERSKLCHDKLLACDF----DI 243
+V++P S + NW +E +W + ++G +E + ++ +
Sbjct: 212 TINKAIVVSPSSLVKNWEKEFTKWLHGRLLCLPMEGGTKENTIRALEQFSMTSARLGTPV 271
Query: 244 CVASYEIIIREKASFKKIDWEYVVIDEAHRIKNEESMLSQVLREFSSRNRLLITGTPLQN 303
+ SYE K + V+ DE HR+KN +++ Q L ++ R+L++GTP+QN
Sbjct: 272 LLISYETFRIYAEILCKYEVGMVICDEGHRLKNSDNLTYQALMGLKTKRRVLLSGTPIQN 331
Query: 304 NLHELWALLNFLLPDIFADSATXXXXXXXXXXXXXXXXVVKQ-----------LHTVLSP 352
+L E ++L+NF+ P++ +A +Q L ++
Sbjct: 332 DLTEYYSLVNFVNPEMLGTAAVFKRNFESAILRGQNTDSTEQERQRAIEKTQELIGLVDQ 391
Query: 353 FLLRRIKNDVEGSLLPKKELNVYVGMSSMQKKWYKQILEKD-IDAVNGSNGQKESKTRLL 411
++RR + L K E+ + ++++Q + Y L+ D + +K S T L
Sbjct: 392 CIIRRTNQILTKYLPVKFEMVICAKLTAIQLELYTNFLKSDQVRRSLADCNEKASLTALA 451
Query: 412 NIVMQLRKCCNHPYL-----------FDGAE---PGPPYTTDEHLVYNSAXXXXXXXXXX 457
+I L+K C+HP L F+ ++ P D + +
Sbjct: 452 DITT-LKKICSHPDLIYEKLTAREKGFENSQNVLPSNYKPKDLNPELSGKFMLLDFMLAA 510
Query: 458 XXXEQGSRVLIFSQMSRVLDILEDYCYFREYEYCRIDGSTAHEDRINAIDDYNAPDSKKF 517
E +V++ S ++ LD+ E R+Y + R+DG+ + + R +D +N P+S F
Sbjct: 511 IRAEGNDKVVLISNYTQTLDLFEQLARKRKYGFVRLDGTMSIKKRSKVVDRFNDPESDSF 570
Query: 518 IFLLTTRAGGLGINLTTADIVVLYDSDWNPQADLQAMDRAHRIGQKKQVRVFRFVTDNSV 577
+F+L+++AGG G+NL A+ + ++D DWNP D QAM R R GQKK ++R V S+
Sbjct: 571 LFMLSSKAGGCGLNLIGANRLFMFDPDWNPANDEQAMARVWRDGQKKPCYIYRLVASGSI 630
Query: 578 EEKILERATQKLKLDQLVI 596
EEKIL+R T K L +I
Sbjct: 631 EEKILQRQTHKKSLSSTII 649
>HsM8922362 [K] KOG0385 Chromatin remodeling complex WSTF-ISWI small subunit
Length = 310
Score = 188 bits (478), Expect = 3e-47
Identities = 96/189 (50%), Positives = 130/189 (67%), Gaps = 7/189 (3%)
Query: 414 VMQLRKCCNHPYLFDGAEPGPPYTT----DEHLVYNSAXXXXXXXXXXXXXEQGSRVLIF 469
+M LRKCCNHPYL + P P T DE LV NS ++G +VL+F
Sbjct: 1 MMLLRKCCNHPYLIE--YPIDPVTQEFKIDEELVTNSGKFLILDRMLPELKKRGHKVLLF 58
Query: 470 SQMSRVLDILEDYCYFREYEYCRIDGSTAHEDRINAIDDYNAPDSKKFIFLLTTRAGGLG 529
SQM+ +LDIL DYC+ R++ + R+DGS ++ +R + +N D + FIFL++TRAGGLG
Sbjct: 59 SQMTSMLDILMDYCHLRDFNFSRLDGSMSYSEREKNMHSFNT-DPEVFIFLVSTRAGGLG 117
Query: 530 INLTTADIVVLYDSDWNPQADLQAMDRAHRIGQKKQVRVFRFVTDNSVEEKILERATQKL 589
INLT AD V++YDSDWNPQ+DLQA DR HRIGQ K V V+R VT N++++KI+ERA K
Sbjct: 118 INLTAADTVIIYDSDWNPQSDLQAQDRCHRIGQTKPVVVYRLVTANTIDQKIVERAAAKR 177
Query: 590 KLDQLVIQQ 598
KL++L+I +
Sbjct: 178 KLEKLIIHK 186
>At4g31900 [R] KOG0383 Predicted helicase
Length = 1067
Score = 187 bits (476), Expect = 6e-47
Identities = 106/283 (37%), Positives = 163/283 (57%), Gaps = 18/283 (6%)
Query: 356 RRIKNDV-EGSLLPKKELNVYVGMSSMQKKWYKQILEKDIDAVNGSNGQKESKTRLLNIV 414
+R+K DV + + PKKEL + V MSS QK+ YK ++ + + K+ ++ N++
Sbjct: 325 KRLKKDVLKDKVPPKKELILRVDMSSQQKEVYKAVITNNYQVLT-----KKRDAKISNVL 379
Query: 415 MQLRKCCNHPYLFDGAEPGPPYTTDEH--LVYNSAXXXXXXXXXXXXXEQGSRVLIFSQM 472
M+LR+ C+HPYL EP + L+ S EQG RVLI++Q
Sbjct: 380 MKLRQVCSHPYLLPDFEPRFEDANEAFTKLLEASGKLQLLDKMMVKLKEQGHRVLIYTQF 439
Query: 473 SRVLDILEDYCYFREYEYCRIDGSTAHEDRINAIDDYNAPDSKKFIFLLTTRAGGLGINL 532
L +LEDY F+ + Y RIDG + +R ID +NA +S +F FLL+TRAGG+GINL
Sbjct: 440 QHTLYLLEDYFTFKNWNYERIDGKISGPERQVRIDRFNAENSNRFCFLLSTRAGGIGINL 499
Query: 533 TTADIVVLYDSDWNPQADLQAMDRAHRIGQKKQVRVFRFVTDNSVEEKILERATQKLKLD 592
TAD V++YDSDWNP ADLQAM R HR+GQ +V ++R + +VEE+++E K+ L+
Sbjct: 500 ATADTVIIYDSDWNPHADLQAMARVHRLGQTNKVMIYRLIHKGTVEERMMEITKNKMLLE 559
Query: 593 QLVIQQGRVTXXXXXXXXDSKEGLLSMIQHGAVDVFKSNDSSA 635
LV+ + + ++ L +I++G+ ++F + A
Sbjct: 560 HLVVGKQHL----------CQDELDDIIKYGSKELFSEENDEA 592
Score = 88.2 bits (217), Expect = 6e-17
Identities = 46/100 (46%), Positives = 61/100 (61%), Gaps = 2/100 (2%)
Query: 129 QFRESPAYVNGQLRPYQIQGLNWLVALHKNQLAGILADEMGLGKTLQTIAFLGYLRYIEK 188
QF +P ++ G L YQ++GLN+L + ILADEMGLGKT+Q+IAFL L E+
Sbjct: 213 QFDLTPEFLTGTLHTYQLEGLNFLRYSWSKKTNVILADEMGLGKTIQSIAFLASL--FEE 270
Query: 189 KNGPFLVIAPKSTLNNWLREINRWTPEVSAFILQGDKEER 228
P LV+AP ST+ NW RE W P ++ + GD E R
Sbjct: 271 NLSPHLVVAPLSTIRNWEREFATWAPHMNVVMYTGDSEAR 310
>7300511 [L] KOG0388 SNF2 family DNA-dependent ATPase
Length = 1477
Score = 182 bits (462), Expect = 3e-45
Identities = 107/316 (33%), Positives = 169/316 (52%), Gaps = 29/316 (9%)
Query: 134 PAYVNGQLRPYQIQGLNWLVALHKNQLAGILADEMGLGKTLQTIAFLGYLRYIEKKNGPF 193
P G L+ YQI+G+ WL ++ ++GILADEMGLGKT+Q+IAFL + I + G F
Sbjct: 528 PKMFKGTLKGYQIKGMTWLANIYDQGISGILADEMGLGKTVQSIAFLCH---IAEHYGVF 584
Query: 194 LVIAPKSTLNNWLREINRWTPEVSAFILQGDKEERSKLCHDKLLACDFDICVASYEIIIR 253
+ + + W IL+ +++ D F + + SY++++
Sbjct: 585 VPD---------FKVVPYWGSPAERKILRQFWDQKHLHTRD----ASFHVVITSYQLVVS 631
Query: 254 EKASFKKIDWEYVVIDEAHRIKNEESMLSQVLREFSSRNRLLITGTPLQNNLHELWALLN 313
+ F +I W+Y+V+DEA IK+ S ++L FS RNRLL++GTP+QN++ ELWALL+
Sbjct: 632 DYKYFNRIKWQYMVLDEAQAIKSAASQRWKLLLGFSCRNRLLLSGTPIQNSMAELWALLH 691
Query: 314 FLLP------DIFADSATXXXXXXXXXXXXXXXXVVKQLHTVLSPFLLRRIKNDVEGSLL 367
F++P D F + + + +LH +L PF+LRRIK DVE L
Sbjct: 692 FIMPTLFDSHDEFNEWFSKDIESHAENKTGIDEKQISRLHMILKPFMLRRIKKDVENELS 751
Query: 368 PKKELNVYVGMSSMQKKWYKQILEK-------DIDAVNGSNGQKESKTRLLNIVMQLRKC 420
K E+ VY ++ QK Y+ + +K + + + + S + L+N+VMQ RK
Sbjct: 752 DKIEIMVYCPLTIRQKLLYRALKQKIRIEDLLHLTSGSTTTSSSSSASNLMNLVMQFRKV 811
Query: 421 CNHPYLFDGAEPGPPY 436
CNHP LF+ + P+
Sbjct: 812 CNHPELFERRDARSPF 827
Score = 79.0 bits (193), Expect = 4e-14
Identities = 40/93 (43%), Positives = 63/93 (67%), Gaps = 1/93 (1%)
Query: 463 GSRVLIFSQMSRVLDILEDYCYFREYEYCRIDGSTAHEDRINAIDDYNAPDSKKFIFLLT 522
G RVLI+SQM++++D+LE+Y + R++ Y R+DGS+ R + + D+ + F+FLL+
Sbjct: 1103 GHRVLIYSQMTKMIDLLEEYMWHRKHRYMRLDGSSKISARRDMVADFQT-RADIFVFLLS 1161
Query: 523 TRAGGLGINLTTADIVVLYDSDWNPQADLQAMD 555
TRAGGLGINLT AD + + + P+ +L D
Sbjct: 1162 TRAGGLGINLTAADTLKSSVTPYRPKPNLIRSD 1194
>SPAC22F3.03c [L] KOG0390 DNA repair protein SNF2 family
Length = 768
Score = 174 bits (440), Expect = 9e-43
Identities = 124/464 (26%), Positives = 215/464 (45%), Gaps = 39/464 (8%)
Query: 161 AGILADEMGLGKTLQTIAFLGYL---RYIEKKNGPF---LVIAPKSTLNNWLREINRWTP 214
+ ILADEMGLGKTLQTI + L Y ++ +V+AP + L NW E W
Sbjct: 187 SAILADEMGLGKTLQTITVVWTLLKQSYYANRSSTINNAMVVAPVTLLKNWENEFYNWLG 246
Query: 215 EVSAFI-LQGDKEERSKLCHDKLLACDFDICVASYEIIIREKASFK-KIDWEYVVIDEAH 272
+ + E+ + +K + I + YE + ++ ID + ++ DEAH
Sbjct: 247 HERIHVYIARCAEDFQEFTSNKT----YSIIITGYETVCTYLRNYGCGIDIDLLICDEAH 302
Query: 273 RIKNEESMLSQVLREFSSRNRLLITGTPLQNNLHELWALLNFLLPDIFADSAT------- 325
R+K+ S L + +R RLL+TGTPLQN+L E ++++NF++P +
Sbjct: 303 RLKSMSSQTWITLNKLKTRKRLLLTGTPLQNDLSEYFSMVNFIIPGSLGTPNSFKAQYER 362
Query: 326 ----XXXXXXXXXXXXXXXXVVKQLHTVLSPFLLRRIKNDVEGSLLPKKELNVYVGMSSM 381
+++L S F LRR N + L P+ ++ +++ +
Sbjct: 363 PILRSRSMNASSRDISLGAARLQRLFEFTSNFTLRRKANILAKHLPPRTDIVLFIKPTHQ 422
Query: 382 QKKWYKQILEKDIDAVNGSNGQKESKTRLLNIVMQLRKCCNHPYL-------FDGAEPGP 434
Q+ Y +L+ G + K L I+ +L K CN L F E
Sbjct: 423 QENVYGHVLD-------GFKSSVDQKGYYLKILTRLSKICNSTILLRNEKENFLSTELQD 475
Query: 435 PYTTDEHLVYNSAXXXXXXXXXXXXXEQG-SRVLIFSQMSRVLDILEDYCYFREYEYCRI 493
+ ++ + S+ ++G + +I SQ L+++E + +C++
Sbjct: 476 KHVFEQENMLLSSSKLQILAALLKSFQRGCQKAVIVSQYKETLELIELFLSILHVRFCKL 535
Query: 494 DGSTAHEDRINAIDDYNAPDSKKF-IFLLTTRAGGLGINLTTADIVVLYDSDWNPQADLQ 552
GST +R + ++N K+F + LL+++AGG G+NLT + +++Y+ WNP DLQ
Sbjct: 536 LGSTPFSERDLIVHNFNTSSFKEFSVLLLSSKAGGCGLNLTGSTRLIIYEPSWNPAQDLQ 595
Query: 553 AMDRAHRIGQKKQVRVFRFVTDNSVEEKILERATQKLKLDQLVI 596
A+ R +R GQK+ V ++ F++ ++E+I R K L I
Sbjct: 596 ALSRIYRSGQKRPVCIYTFLSSGMLDERIFIRQNTKQGLSSSFI 639
>YBR073w [L] KOG0390 DNA repair protein SNF2 family
Length = 958
Score = 172 bits (435), Expect = 3e-42
Identities = 136/496 (27%), Positives = 226/496 (45%), Gaps = 70/496 (14%)
Query: 152 LVALHKNQLAG-ILADEMGLGKTLQTIAFLGYLRYIEKKNGPF----------------- 193
LV + + ++G +LAD+MGLGKTL +I + L + PF
Sbjct: 331 LVLENDSDISGCLLADDMGLGKTLMSITLIWTLI----RQTPFASKVSCSQSGIPLTGLC 386
Query: 194 ---LVIAPKSTLNNWLREINRWTPEVSAFILQGDKEERSKLCHDKLLACDFDICVASYEI 250
LV+ P + + NW RE +W +L R+ DK+ +F +Y++
Sbjct: 387 KKILVVCPVTLIGNWKREFGKWLNLSRIGVLT--LSSRNSPDMDKMAVRNFLKVQRTYQV 444
Query: 251 II---------REKASFKKIDWEYVVIDEAHRIKNEESMLSQVLREFSSRNRLLITGTPL 301
+I E+ K + +V DE HR+KN S + L+ R +LL+TGTP+
Sbjct: 445 LIIGYEKLLSVSEELEKNKHLIDMLVCDEGHRLKNGASKILNTLKSLDIRRKLLLTGTPI 504
Query: 302 QNNLHELWALLNFLLPDIFADSATXXXXXXXXXXXXXXXXV-------------VKQLHT 348
QN+L+E + +++F+ P I A+ K++
Sbjct: 505 QNDLNEFFTIIDFINPGILGSFASFKRRFIIPITRARDTANRYNEELLEKGEERSKEMIE 564
Query: 349 VLSPFLLRRIKNDVEGSLLPKKELNVYVGMSSMQKKWYKQILEK---DIDAVNGSNGQKE 405
+ F+LRR +E L PK ++ ++ S Q +K IL+ D + S+
Sbjct: 565 ITKRFILRRTNAILEKYLPPKTDIILFCKPYSQQILAFKDILQGARLDFGQLTFSSS--- 621
Query: 406 SKTRLLNIVMQLRKCCNHPYLFDGAEP------GPPYTTDEHLVYNSAXXXXXXXXXXXX 459
L ++ L+K CN P L G++P + D + ++
Sbjct: 622 -----LGLITLLKKVCNSPGLV-GSDPYYKSHIKDTQSQDSYSRSLNSGKLKVLMTLLEG 675
Query: 460 XEQGSR--VLIFSQMSRVLDILEDYCYFREYEYCRIDGSTAHEDRINAIDDYNAPDSKKF 517
+G++ V++ S ++ LDI+E+ +CR+DGS + R + + +N + F
Sbjct: 676 IRKGTKEKVVVVSNYTQTLDIIENLMNMAGMSHCRLDGSIPAKQRDSIVTSFNR-NPAIF 734
Query: 518 IFLLTTRAGGLGINLTTADIVVLYDSDWNPQADLQAMDRAHRIGQKKQVRVFRFVTDNSV 577
FLL+ ++GG+G+NL ++L+D+DWNP DLQAM R HR GQKK ++R VT +
Sbjct: 735 GFLLSAKSGGVGLNLVGRSRLILFDNDWNPSVDLQAMSRIHRDGQKKPCFIYRLVTTGCI 794
Query: 578 EEKILERATQKLKLDQ 593
+EKIL+R K L Q
Sbjct: 795 DEKILQRQLMKNSLSQ 810
>CE16277 [B] KOG0389 SNF2 family DNA-dependent ATPase
Length = 1038
Score = 171 bits (432), Expect = 8e-42
Identities = 101/301 (33%), Positives = 151/301 (49%), Gaps = 24/301 (7%)
Query: 141 LRPYQIQGLNWLVALHKNQLAGILADEMGLGKTLQTIAFLGYLRYIEKKNGPFLVIAPKS 200
L YQ+ G+ WL+ ++ L IL DEMGLGKT+Q +AFL YL+ I K GP L++ P S
Sbjct: 394 LHDYQLIGVKWLIMMYNKDLNAILGDEMGLGKTIQIVAFLSYLKQI-GKTGPHLIVVPSS 452
Query: 201 TLNNWLREINRWTPEVSAFILQGDKEERSKLCHD-KLLACDFDICVASYEIIIR---EKA 256
T+ NW+ E ++W P + G ++ER L H K D+ + +Y ++ +K
Sbjct: 453 TIENWIGEFHKWCPSIQLLTYYGSQDERKHLRHRVKKQKDHIDVILTTYNMVTSKSDDKK 512
Query: 257 SFKKIDWEYVVIDEAHRIKNEESMLSQVLREFSSRNRLLITGTPLQNNLHELWALLNFLL 316
FK YV+ DE H +KN +S + L + + ++L+TGTPLQNNL EL +L+ F+L
Sbjct: 513 FFKNFSLNYVIYDEGHMLKNCDSERYRGLMKVKGKKKILLTGTPLQNNLIELISLMYFVL 572
Query: 317 PDIFADSATXXX-----------XXXXXXXXXXXXXVVKQLHTVLSPFLLRRIKNDVEGS 365
+F +++ +L P++LRR+KN V GS
Sbjct: 573 SKVFNKYCEDITHLLQHFKQLGPALDTKNKALYQQDRIEEAKAILQPYILRRLKNQVLGS 632
Query: 366 LLPKKELNVYVGMSSMQKKWYKQILEKDIDAVNGSNGQKESKTRLLNIVMQLRKCCNHPY 425
L K E + V M QK+ Y I+E + Q E +M+LR+ NHP
Sbjct: 633 LPSKSEQIIEVEMKKPQKQLYDNIVE--------ALQQSEESGDSYGSLMRLRQAANHPL 684
Query: 426 L 426
L
Sbjct: 685 L 685
Score = 124 bits (311), Expect = 8e-28
Identities = 66/135 (48%), Positives = 93/135 (68%), Gaps = 1/135 (0%)
Query: 461 EQGSRVLIFSQMSRVLDILEDYCYFREYEYCRIDGSTAHEDRINAIDDYNAPDSKKFIFL 520
++G +VLIFSQ + +LDILE Y R Y Y R+DG T DR I+++N F+FL
Sbjct: 767 KKGDKVLIFSQFTSMLDILEVYLNIRGYSYKRLDGQTPVLDRQEMINEFNL-SKDLFVFL 825
Query: 521 LTTRAGGLGINLTTADIVVLYDSDWNPQADLQAMDRAHRIGQKKQVRVFRFVTDNSVEEK 580
L+TRAGGLGINLT+A+ ++++D D+NP D QA DR HR+GQ+K V V R V+ +VE
Sbjct: 826 LSTRAGGLGINLTSANHIIIHDIDFNPYNDKQAEDRCHRMGQEKPVHVTRLVSKGTVEVG 885
Query: 581 ILERATQKLKLDQLV 595
+L A +KL+L++ V
Sbjct: 886 MLALAKKKLQLEKQV 900
>Hs15805014 [R] KOG0391 SNF2 family DNA-dependent ATPase
Length = 3124
Score = 170 bits (430), Expect = 1e-41
Identities = 104/315 (33%), Positives = 153/315 (48%), Gaps = 4/315 (1%)
Query: 133 SPAYVNGQLRPYQIQGLNWLVALHKNQLAGILADEMGLGKTLQTIAFLGYLRYIEKKNGP 192
+P+ + G LR YQ GL+WL L++ L GILADE GLGKT+Q IAF +L E GP
Sbjct: 1047 APSLLYGALRDYQKIGLDWLAKLYRKNLNGILADEAGLGKTVQIIAFFAHLACNEGNWGP 1106
Query: 193 FLVIAPKSTLNNWLREINRWTPEVSAFILQGDKEERSKLCHDKLLACDFDICVASYEIII 252
LV+ + W E+ RW P + G E + F +C+ SY
Sbjct: 1107 HLVVVRSCNILKWELELKRWCPGLKILSYIGSHRELKAKRQEWAEPNSFHVCITSYTQFF 1166
Query: 253 REKASFKKIDWEYVVIDEAHRIKNEESMLSQVLREFSSRNRLLITGTPLQNNLHELWALL 312
R +F ++ W+ +VIDE R+K + + S+ RLL+ +PL N ELW ++
Sbjct: 1167 RGLTAFTRVRWKCLVIDEMQRVKGMTERHWEAVFTLQSQQRLLLIDSPLHNTFLELWTMV 1226
Query: 313 NFLLPDIFADSATXXXXXXXXXXXXXXXXVVKQLHTVLSPFLLRRIKNDVEGSLLPKKEL 372
+FL+P I + VV +LH V PF+LRR K DVE L K E
Sbjct: 1227 HFLVPGISRPYLSSPLRAPSEESQDYYHKVVIRLHRVTQPFILRRTKRDVEKQLTKKYEH 1286
Query: 373 NVYVGMSSMQKKWYKQILEKDIDAVNGSNGQKESKTRLLNIVMQLRKCCNHPYLFDGAEP 432
+ +S+ QK Y+ ++ + +G +L+I+++L++ CNHP L + P
Sbjct: 1287 VLKCRLSNRQKALYEDVILQPGTQEALKSGH---FVNVLSILVRLQRICNHPGLVEPRHP 1343
Query: 433 GPPYTTDEHLVYNSA 447
G Y L Y SA
Sbjct: 1344 GSSYVAGP-LEYPSA 1357
Score = 99.0 bits (245), Expect = 4e-20
Identities = 54/128 (42%), Positives = 77/128 (59%), Gaps = 1/128 (0%)
Query: 462 QGSRVLIFSQMSRVLDILEDYCYFREYEYCRIDGSTAHEDRINAIDDYNAPDSKKFIFLL 521
+G RVLI SQM +LDILE + F Y RID + + E R + +N D + F +L
Sbjct: 1877 EGRRVLILSQMILMLDILEMFLNFHYLTYVRIDENASSEQRQELMRSFNR-DRRIFCAIL 1935
Query: 522 TTRAGGLGINLTTADIVVLYDSDWNPQADLQAMDRAHRIGQKKQVRVFRFVTDNSVEEKI 581
+T + GINL AD VV YD+D NP D +A + RIG+ K + ++R V+ NS+EEK+
Sbjct: 1936 STHSRTTGINLVEADTVVFYDNDLNPVMDAKAQEWCDRIGRCKDIHIYRLVSGNSIEEKL 1995
Query: 582 LERATQKL 589
L+ T+ L
Sbjct: 1996 LKNGTKDL 2003
>SPAC3G6.12 [L] KOG0388 SNF2 family DNA-dependent ATPase
Length = 1063
Score = 167 bits (422), Expect = 1e-40
Identities = 82/196 (41%), Positives = 125/196 (62%), Gaps = 7/196 (3%)
Query: 132 ESPAYVNGQLRPYQIQGLNWLVALHKNQLAGILADEMGLGKTLQTIAFLGYLRYIEKKNG 191
+ P + +L+ YQ++GLNWL L++ + GILADEMGLGKT+Q+I+ + YL G
Sbjct: 833 KQPKMLMCKLKEYQLKGLNWLANLYEQGINGILADEMGLGKTVQSISVMAYLAETHNIWG 892
Query: 192 PFLVIAPKSTLNNWLREINRWTPEVSAFILQGDKEERSKL----CHDKLLACD---FDIC 244
PFLVIAP STL+NW +EI R+ P++ G ++R L C + + F +
Sbjct: 893 PFLVIAPASTLHNWQQEITRFVPKLKCIPYWGSTKDRKILRKFWCRKNMTYDENSPFHVV 952
Query: 245 VASYEIIIREKASFKKIDWEYVVIDEAHRIKNEESMLSQVLREFSSRNRLLITGTPLQNN 304
V SY++++ + F+ + W+Y+++DEA IK+ S + L F RNRLL+TGTP+QN
Sbjct: 953 VTSYQLVVLDAQYFQSVKWQYMILDEAQAIKSSSSSRWKSLLAFKCRNRLLLTGTPIQNT 1012
Query: 305 LHELWALLNFLLPDIF 320
+ ELWALL+F++P +F
Sbjct: 1013 MQELWALLHFIMPSLF 1028
>CE23323 [L] KOG0390 DNA repair protein SNF2 family
Length = 751
Score = 157 bits (398), Expect = 7e-38
Identities = 121/427 (28%), Positives = 188/427 (43%), Gaps = 64/427 (14%)
Query: 194 LVIAPKSTLNNWLREINRWT-----PEVSAFILQGDKEERSKLCHDKLLACDFDICVASY 248
L+I P S +NNW E ++W P V A +S + KL+ V SY
Sbjct: 188 LIIVPSSLVNNWKAEFDKWWRLMRFPAVIALTANDITTYQSTI---KLMP----YLVISY 240
Query: 249 EIIIREKASFKKIDWEYVVIDEAHRIKNEESMLSQVLREFSSRNRLLITGTPLQNNLHEL 308
++ R K I ++ +V DE H++KN + L + L RL++TGTP+QN+ E
Sbjct: 241 DLAQRHVEKLKIIRFDVMVCDEGHKLKNLDGKLRKTLLSLEIPRRLILTGTPMQNDFEEF 300
Query: 309 WALLNFLLPDIFADSATXXXXXXXXXXXXXXXXVVKQLHTVLSPFLLRRIKNDVEGSLLP 368
++LL+F+ P +F +QL+ ++ +LRR DV+ LP
Sbjct: 301 YSLLDFVRPSVFGSIVEFRKMCSDRP---------EQLNELIDECMLRRTAADVDLKHLP 351
Query: 369 KK-ELNVYVGMSSMQKKWYKQILEKDIDAVNGSNGQKESKTRLLNIVMQLRKCCNHPYL- 426
+K E ++ S +QK + +I D + G L+++ R+ NHP L
Sbjct: 352 EKHEYILFCAASPIQKHVHSEIC----DYMTGD---------ALSLIFFARQLANHPKLL 398
Query: 427 ----------------------FDGAEPGPPYTTDEHLVYNSAXXXXXXXXXXXXXEQGS 464
FDGA V S
Sbjct: 399 LDNLREKTEKSKAHKHSPLLLAFDGAH------MPRGGVKESGKLTALVDMIKCFRLLQE 452
Query: 465 RVLIFSQMSRVLDILEDYCYFREYEYCRIDGSTAHEDRINAIDDYNAPDSKKFIFLLTTR 524
+I S LD+++ C + ++ R+DG T DR + +N IFLL+T+
Sbjct: 453 CTVIVSNYIETLDMIQQLCEYLNFKVLRLDGKTQVPDRQKLVRTFNDHRDPSNIFLLSTK 512
Query: 525 AGGLGINLTTADIVVLYDSDWNPQADLQAMDRAHRIGQKKQVRVFRFVTDNSVEEKILER 584
AGG+G+NL A +VL+DSDWNP D QAM R R GQ + ++R +T ++EEK+L+R
Sbjct: 513 AGGVGLNLIGASRLVLFDSDWNPANDQQAMARIWRDGQVRPCHIYRLITTGTIEEKMLQR 572
Query: 585 ATQKLKL 591
+K L
Sbjct: 573 QIKKTGL 579
>HsM14149926 [K] KOG0384 Chromodomain-helicase DNA-binding protein
Length = 757
Score = 155 bits (393), Expect = 3e-37
Identities = 79/135 (58%), Positives = 96/135 (70%)
Query: 463 GSRVLIFSQMSRVLDILEDYCYFREYEYCRIDGSTAHEDRINAIDDYNAPDSKKFIFLLT 522
G +VLIFSQM R LDILEDY R Y Y RIDG R AID + PDS +F+FLL
Sbjct: 22 GHKVLIFSQMVRCLDILEDYLIQRRYTYERIDGRVRGNLRQAAIDRFCKPDSDRFVFLLC 81
Query: 523 TRAGGLGINLTTADIVVLYDSDWNPQADLQAMDRAHRIGQKKQVRVFRFVTDNSVEEKIL 582
TRAGGLGINLT AD +++DSDWNPQ DLQA R HRIGQ K V+V+R +T NS E ++
Sbjct: 82 TRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKVYRLITRNSYEREMF 141
Query: 583 ERATQKLKLDQLVIQ 597
++A+ KL LD+ V+Q
Sbjct: 142 DKASLKLGLDKAVLQ 156
>SPAC25A8.01c [B] KOG0389 SNF2 family DNA-dependent ATPase
Length = 922
Score = 149 bits (377), Expect = 2e-35
Identities = 105/315 (33%), Positives = 160/315 (50%), Gaps = 32/315 (10%)
Query: 140 QLRPYQIQGLNWLVALHKNQLAGILADEMGLGKTLQTIAFLGYLRYIEKK-NGPFLVIAP 198
+L+ YQI G+NWL L++ +LAGILADEMGLGKT QTIAF L ++K NGP LVIAP
Sbjct: 386 KLQDYQIIGINWLYLLYELKLAGILADEMGLGKTCQTIAFFSLL--MDKNINGPHLVIAP 443
Query: 199 KSTLNNWLREINRWTPEVSAFILQGDKEERSKLCHDKLLA--CDFDICVASYEIIIREKA 256
ST+ NWLRE ++ P++ + G + ER ++ +++ + +++ + +Y + KA
Sbjct: 444 ASTMENWLREFAKFCPKLKIELYYGSQVEREEI-RERINSNKDSYNVMLTTYRLAATSKA 502
Query: 257 S---FKKIDWEYVVIDEAHRIKNEESMLSQVLREFSSRNRLLITGTPLQNNLHELWALLN 313
+ + V DE H +KN S + L + R+L+TGTPLQNNL EL +LL
Sbjct: 503 DRLFLRNQKFNVCVYDEGHYLKNRASERYRHLMSIPADFRVLLTGTPLQNNLKELISLLA 562
Query: 314 FLLPDIF--------ADSATXXXXXXXXXXXXXXXXVVKQLHTVLSPFLLRRIKNDVEGS 365
F+LP +F V + +++PF+LRR K+ V +
Sbjct: 563 FILPHVFDYGLKSLDVIFTMKKSPESDFERALLSEQRVSRAKMMMAPFVLRRKKSQVLDA 622
Query: 366 LLPKKELNVYVGMSSMQKKWYKQILEKDIDAVNGSNGQKESKTRLLN------------- 412
L K + + S +++ Y K +VN + KT L
Sbjct: 623 LPKKTRIIEFCEFSEEERRRYDDFASK--QSVNSLLDENVMKTNLDTNANLAKKKSTAGF 680
Query: 413 IVMQLRKCCNHPYLF 427
+++QLRK +HP LF
Sbjct: 681 VLVQLRKLADHPMLF 695
Score = 121 bits (304), Expect = 5e-27
Identities = 64/132 (48%), Positives = 90/132 (67%), Gaps = 1/132 (0%)
Query: 461 EQGSRVLIFSQMSRVLDILEDYCYFREYEYCRIDGSTAHEDRINAIDDYNAPDSKKFIFL 520
E G RV++FSQ ++VLDIL+ ++ R DGST + R + ID + A +S +FL
Sbjct: 775 ENGDRVVLFSQFTQVLDILQLVMKSLNLKFLRFDGSTQVDFRQDLIDQFYADESIN-VFL 833
Query: 521 LTTRAGGLGINLTTADIVVLYDSDWNPQADLQAMDRAHRIGQKKQVRVFRFVTDNSVEEK 580
L+T+AGG GINL A++V+LYD +NP DLQA DRAHR+GQKK+V V++FV +++EE
Sbjct: 834 LSTKAGGFGINLACANMVILYDVSFNPFDDLQAEDRAHRVGQKKEVTVYKFVVKDTIEEH 893
Query: 581 ILERATQKLKLD 592
I A K+ LD
Sbjct: 894 IQRLANAKIALD 905
>7296236 [K] KOG0384 Chromodomain-helicase DNA-binding protein
Length = 2237
Score = 147 bits (370), Expect = 1e-34
Identities = 83/208 (39%), Positives = 122/208 (57%), Gaps = 20/208 (9%)
Query: 129 QFRESPAYVNGQ-LRPYQIQGLNWLVALHKNQLAGILADEMGLGKTLQTIAFLGYLRYIE 187
+ ++P Y G LRPYQ++GLNWL N ILADEMGLGKT+Q++ F+ + Y
Sbjct: 2009 KLEKTPVYKGGNSLRPYQLEGLNWLKFSWYNTHNCILADEMGLGKTIQSLTFVHSV-YEY 2067
Query: 188 KKNGPFLVIAPKSTLNNWLREINRWTPEVSAFILQGD--------------KEERSKLCH 233
GPFLVIAP ST+ NW RE WT +++ + G K E K+
Sbjct: 2068 GIRGPFLVIAPLSTIPNWQREFEGWT-DMNVVVYHGSVTSKQMIQDYEYYYKTESGKVLK 2126
Query: 234 DKLLACDFDICVASYEIIIREKASFKKIDWEYVVIDEAHRIKNEESMLSQVLREFSSRNR 293
+ + F++ + ++E+I+ + K +W VIDEAHR+KN L + LR+ + +R
Sbjct: 2127 EPI---KFNVLITTFEMIVTDYMDLKAFNWRLCVIDEAHRLKNRNCKLLEGLRQLNLEHR 2183
Query: 294 LLITGTPLQNNLHELWALLNFLLPDIFA 321
+L++GTPLQNN+ EL++LLNFL P F+
Sbjct: 2184 VLLSGTPLQNNISELFSLLNFLEPSQFS 2211
>At1g02670 [L] KOG1002 Nucleotide excision repair protein RAD16
Length = 678
Score = 146 bits (369), Expect = 2e-34
Identities = 137/534 (25%), Positives = 227/534 (41%), Gaps = 80/534 (14%)
Query: 132 ESPAYVNGQLRPYQIQGLNWLVALHKNQL-AGILADEMGLGKTLQTIAFLGYLRYIEKKN 190
E P + L YQ + L W + + GILADEMG+GKT+Q I+ + R +++
Sbjct: 125 EQPLDLIIPLLKYQKEFLAWATIQELSAVRGGILADEMGMGKTIQAISLVLARREVDRAK 184
Query: 191 -----GPFLVIAPKSTLNNWLREINRWTPEVSAFILQGDKEERSKLCHDKLLACDFDICV 245
G LV+ P L+ WL EI+R T S +LQ +R K KL+ DF +
Sbjct: 185 SREAVGHTLVLVPPVALSQWLDEISRLTSPGSTRVLQYHGPKRDKNVQ-KLMNYDFVLTT 243
Query: 246 ASY--------EIIIREKASFKKIDWEYVVIDEAHRIKNEESMLSQVLREFSSRNRLLIT 297
+ E + + I W +++DEAH IKN S ++ + + R ++
Sbjct: 244 SPIVENEYRKDEGVDETMSPLHSIKWNRIIVDEAHDIKNRSSRTAKAVFALEATYRWALS 303
Query: 298 GTPLQNNLHELWALLNFLLPDIFADSATXXXXXXXXXXXXXXXXVVKQLHTVLSPFLLR- 356
GTPLQN++ EL++L+++ + F + V + + P +
Sbjct: 304 GTPLQNDVDELYSLVSYSFLNFFYSTYASFAFRHTHITFARNVTVKFLIGGNILPLSIPV 363
Query: 357 RIKN-------DVEGSLLPKKELNVYVGMSSMQKKWYKQILEKDIDAVNGSNGQKESKTR 409
RI+N + SL K+ + V + + YK + + D + +
Sbjct: 364 RIENVPAVLIMQINTSLGGKRRDALSVVEADFYESLYK-VSKTTFDGYIQAGTLMNNYAH 422
Query: 410 LLNIVMQLRKCCNHPYLFD-----------------------GAEPGPPY--TTDEHLVY 444
+ ++++LR+ +HPYL G +P Y T+ EH
Sbjct: 423 IFGLLIRLRQAVDHPYLVSYSSPSGANANLLDANKNEKECGFGHDPSKDYFVTSSEHQAS 482
Query: 445 NSAXXXXXXXX------------------------XXXXXEQGSRVLIFSQMSRVLDILE 480
+ + ++ ++FSQ + LD++
Sbjct: 483 KTKLKGFRASSILNRINLDDFKTSTKIEALREEIRFMVERDWSAKAIVFSQFTSFLDLI- 541
Query: 481 DYCYFREYEYC-RIDGSTAHEDRINAIDDY-NAPDSKKFIFLLTTRAGGLGINLTTADIV 538
Y + C ++ GS + + A+ ++ PD + + L++ +AGG+ +NLT A V
Sbjct: 542 SYALGKSGVSCVQLVGSMSKAAKDAALKNFKEEPDCR--VLLMSLQAGGVALNLTAASHV 599
Query: 539 VLYDSDWNPQADLQAMDRAHRIGQKKQVRVFRFVTDNSVEEKILERATQKLKLD 592
+ D WNP + QA DR HRIGQ K VRV RF+ + +VEEKIL QK K D
Sbjct: 600 FMMDPWWNPAVERQAQDRIHRIGQCKPVRVVRFIMEKTVEEKIL--TLQKKKED 651
>At1g03750 [KL] KOG0387 Transcription-coupled repair protein CSB/RAD26
(contains SNF2 family DNA-dependent ATPase domain)
Length = 874
Score = 142 bits (357), Expect = 4e-33
Identities = 89/284 (31%), Positives = 144/284 (50%), Gaps = 25/284 (8%)
Query: 130 FRESPAYVNGQLRPYQIQGLNWLVALHKNQLAGILADEMGLGKTLQTIAFL--------- 180
F PA +N +L +Q +G+ ++ L+KN GIL D+MGLGKT+QTIAFL
Sbjct: 140 FAHVPASINCRLLEHQREGVKFMYNLYKNNHGGILGDDMGLGKTIQTIAFLAAVYGKDGD 199
Query: 181 -GYLRYIEKKNGPFLVIAPKSTLNNWLREINRWTPEVSAFILQGDKEERSKLCHDKLLAC 239
G +E GP L+I P S ++NW E +RW + G + + +KL A
Sbjct: 200 AGESCLLESDKGPVLIICPSSIIHNWESEFSRWASFFKVSVYHGSNRD---MILEKLKAR 256
Query: 240 DFDICVASYEIIIREKASFKKIDWEYVVIDEAHRIKNEESMLSQVLREFSSRNRLLITGT 299
++ V S++ + I+WE V+ DEAHR+KNE+S L + E ++ R+ +TGT
Sbjct: 257 GVEVLVTSFDTFRIQGPVLSGINWEIVIADEAHRLKNEKSKLYEACLEIKTKKRIGLTGT 316
Query: 300 PLQNNLHELWALLNFLLP----------DIFADSATXXXXXXXXXXXXXXXXVVKQ-LHT 348
+QN + EL+ L ++ P D + + KQ L +
Sbjct: 317 VMQNKISELFNLFEWVAPGSLGTREHFRDFYDEPLKLGQRATAPERFVQIADKRKQHLGS 376
Query: 349 VLSPFLLRRIKNDVEGSLLPKKELN-VYVGMSSMQKKWYKQILE 391
+L ++LRR K + G L+ KE N V+ MS +Q++ Y+++++
Sbjct: 377 LLRKYMLRRTKEETIGHLMMGKEDNVVFCQMSQLQRRVYQRMIQ 420
Score = 125 bits (313), Expect = 5e-28
Identities = 64/153 (41%), Positives = 98/153 (63%), Gaps = 2/153 (1%)
Query: 462 QGSRVLIFSQMSRVLDILEDYCYFREYEYCRIDGSTAHEDRINAIDDYNAPDSKKFIFLL 521
+G ++L+FS R+LDILE + + Y + R+DGST R + +DD+NA SK+ +FL+
Sbjct: 555 KGDKILLFSYSVRMLDILEKFLIRKGYSFARLDGSTPTNLRQSLVDDFNASPSKQ-VFLI 613
Query: 522 TTRAGGLGINLTTADIVVLYDSDWNPQADLQAMDRAHRIGQKKQVRVFRFVTDNSVEEKI 581
+T+AGGLG+NL +A+ VV++D +WNP DLQA DR+ R GQK+ V VFR ++ S+EE +
Sbjct: 614 STKAGGLGLNLVSANRVVIFDPNWNPSHDLQAQDRSFRYGQKRHVVVFRLLSAGSLEELV 673
Query: 582 LERATQKLKLDQLVIQQGRVTXXXXXXXXDSKE 614
R K +L + + G++ D KE
Sbjct: 674 YTRQVYKQQLSNIAV-AGKMETRYFEGVQDCKE 705
>Hs4757978 [K] KOG0385 Chromatin remodeling complex WSTF-ISWI small subunit
Length = 220
Score = 127 bits (319), Expect = 1e-28
Identities = 71/174 (40%), Positives = 97/174 (54%)
Query: 148 GLNWLVALHKNQLAGILADEMGLGKTLQTIAFLGYLRYIEKKNGPFLVIAPKSTLNNWLR 207
G NWL Q IL DEMGLGKT QTIA YL GPFL++ P R
Sbjct: 15 GSNWLAQRFHCQNGCILGDEMGLGKTCQTIALFIYLAGRLNDEGPFLILCPYVCFEQLER 74
Query: 208 EINRWTPEVSAFILQGDKEERSKLCHDKLLACDFDICVASYEIIIREKASFKKIDWEYVV 267
+ DKEER+ L D F + + +YEI +++ + K W +V
Sbjct: 75 RNAEICSRSFLCNICSDKEERACLQQDLKQESRFHVLLTTYEICLKDASFLKSFPWSVLV 134
Query: 268 IDEAHRIKNEESMLSQVLREFSSRNRLLITGTPLQNNLHELWALLNFLLPDIFA 321
+DEAHR+KN+ S+L + L EFS LL+TGTP+QN+L EL++LL+F+ PD+F+
Sbjct: 135 VDEAHRLKNQSSLLHKTLSEFSVVFSLLLTGTPIQNSLQELYSLLSFVEPDLFS 188
>CE27689 [B] KOG1000 Chromatin remodeling protein HARP/SMARCAL1 DEAD-box
superfamily
Length = 689
Score = 120 bits (302), Expect = 9e-27
Identities = 113/465 (24%), Positives = 202/465 (43%), Gaps = 60/465 (12%)
Query: 140 QLRPYQIQGLNWLVALHKNQLAGILADEMGLGKTLQTIAFLGYLRYIEKKNGPFLVIAPK 199
+L PYQ +G+ + AL ++ +LADEMGLGK++Q + Y K + P L++ P
Sbjct: 198 RLFPYQKEGV--IFALERDGRI-LLADEMGLGKSVQALTIARYY----KADWPLLIVCPA 250
Query: 200 STLNNWLREINRWTPEVSA-FILQGDKEERSKLCHDKLLACDFDICVASYEIIIREKASF 258
S W +++N + P + FI+ + +C +A + SYE ++ +
Sbjct: 251 SVKGAWKKQLNTFFPIIHRIFIVDKSSDPLPDVCTSNTVA------IMSYEQMVLKHDIL 304
Query: 259 KKIDWEYVVIDEAHRIKNEESMLSQVLREFS--SRNRLLITGTPLQNNLHELWALLNFLL 316
KK + ++ DE+H +K+ ++ ++V + S + + +L++GTP + EL+ + +
Sbjct: 305 KKEKYRTIIFDESHMLKDGKARRTKVATDLSKVALHVILLSGTPALSRPSELFTQIRLID 364
Query: 317 PDIFADSATXXXXXXXXXXXXXXXXV-----VKQLHTVL-SPFLLRRIKNDVEGSLLPKK 370
+F + ++L ++ ++RR+K DV L K+
Sbjct: 365 HKLFTNFHEFAIRYCDGKQGRFCFEAKGCTNSEELAAIMFKRLMIRRLKADVLKDLPEKR 424
Query: 371 ELNVYVGMSSMQKKWYK-QILEKDIDAVNGSNGQKESKTRLLNI--VMQLRKCCNH---P 424
VYV ++ + Q D + VN + ES ++ +++ C H
Sbjct: 425 REVVYVSGPTIDARMDDLQKARADYEKVNSMERKHESLLEFYSLTGIVKAAAVCEHILEN 484
Query: 425 YLFDGAEPGPPYTTDEHLVYNSAXXXXXXXXXXXXXEQGSRVLIFSQMSRVLDILEDYCY 484
Y + A P +VLIF+ VLD ++
Sbjct: 485 YFYPDAPP-------------------------------RKVLIFAHHQIVLDTIQVEVN 513
Query: 485 FREYEYCRIDGSTAHEDRINAIDDYNAPDSKKFIFLLTTRAGGLGINLTTADIVVLYDSD 544
R+ RIDG T R D + D+ + + +L+ A G+GI LT A +VV +
Sbjct: 514 KRKLGSIRIDGKTPSHRRTALCDSFQTDDNIR-VAVLSITAAGVGITLTAASVVVFAEIH 572
Query: 545 WNPQADLQAMDRAHRIGQKKQVRVFRFVTDNSVEEKILERATQKL 589
+NP +QA DRAHR+GQK V V + + ++ + QKL
Sbjct: 573 FNPGYLVQAEDRAHRVGQKDSVFVQYLIAKKTADDVMWNMVQQKL 617
>CE27688 [B] KOG1000 Chromatin remodeling protein HARP/SMARCAL1 DEAD-box
superfamily
Length = 687
Score = 120 bits (302), Expect = 9e-27
Identities = 113/465 (24%), Positives = 202/465 (43%), Gaps = 60/465 (12%)
Query: 140 QLRPYQIQGLNWLVALHKNQLAGILADEMGLGKTLQTIAFLGYLRYIEKKNGPFLVIAPK 199
+L PYQ +G+ + AL ++ +LADEMGLGK++Q + Y K + P L++ P
Sbjct: 196 RLFPYQKEGV--IFALERDGRI-LLADEMGLGKSVQALTIARYY----KADWPLLIVCPA 248
Query: 200 STLNNWLREINRWTPEVSA-FILQGDKEERSKLCHDKLLACDFDICVASYEIIIREKASF 258
S W +++N + P + FI+ + +C +A + SYE ++ +
Sbjct: 249 SVKGAWKKQLNTFFPIIHRIFIVDKSSDPLPDVCTSNTVA------IMSYEQMVLKHDIL 302
Query: 259 KKIDWEYVVIDEAHRIKNEESMLSQVLREFS--SRNRLLITGTPLQNNLHELWALLNFLL 316
KK + ++ DE+H +K+ ++ ++V + S + + +L++GTP + EL+ + +
Sbjct: 303 KKEKYRTIIFDESHMLKDGKARRTKVATDLSKVALHVILLSGTPALSRPSELFTQIRLID 362
Query: 317 PDIFADSATXXXXXXXXXXXXXXXXV-----VKQLHTVL-SPFLLRRIKNDVEGSLLPKK 370
+F + ++L ++ ++RR+K DV L K+
Sbjct: 363 HKLFTNFHEFAIRYCDGKQGRFCFEAKGCTNSEELAAIMFKRLMIRRLKADVLKDLPEKR 422
Query: 371 ELNVYVGMSSMQKKWYK-QILEKDIDAVNGSNGQKESKTRLLNI--VMQLRKCCNH---P 424
VYV ++ + Q D + VN + ES ++ +++ C H
Sbjct: 423 REVVYVSGPTIDARMDDLQKARADYEKVNSMERKHESLLEFYSLTGIVKAAAVCEHILEN 482
Query: 425 YLFDGAEPGPPYTTDEHLVYNSAXXXXXXXXXXXXXEQGSRVLIFSQMSRVLDILEDYCY 484
Y + A P +VLIF+ VLD ++
Sbjct: 483 YFYPDAPP-------------------------------RKVLIFAHHQIVLDTIQVEVN 511
Query: 485 FREYEYCRIDGSTAHEDRINAIDDYNAPDSKKFIFLLTTRAGGLGINLTTADIVVLYDSD 544
R+ RIDG T R D + D+ + + +L+ A G+GI LT A +VV +
Sbjct: 512 KRKLGSIRIDGKTPSHRRTALCDSFQTDDNIR-VAVLSITAAGVGITLTAASVVVFAEIH 570
Query: 545 WNPQADLQAMDRAHRIGQKKQVRVFRFVTDNSVEEKILERATQKL 589
+NP +QA DRAHR+GQK V V + + ++ + QKL
Sbjct: 571 FNPGYLVQAEDRAHRVGQKDSVFVQYLIAKKTADDVMWNMVQQKL 615
>7293730 [R] KOG0383 Predicted helicase
Length = 884
Score = 120 bits (302), Expect = 9e-27
Identities = 69/178 (38%), Positives = 94/178 (52%), Gaps = 20/178 (11%)
Query: 125 DVDFQFRESPAYVNG---QLRPYQIQGLNWLVALHKNQLAGILADEMGLGKTLQTIAFLG 181
D+ ++ + PA++ G QL PYQI+G+NWL + ILADEMGLGKT+QT+ FL
Sbjct: 702 DLKKKYEDQPAFLEGTGMQLHPYQIEGINWLRYSWGQGIDTILADEMGLGKTIQTVTFLY 761
Query: 182 YLRYIEKKNGPFLVIAPKSTLNNWLREINRWTPEVSAFILQGDKEER------------- 228
L GPFLV P STL NW RE W P+ GDK+ R
Sbjct: 762 SLYKEGHCRGPFLVAVPLSTLVNWEREFELWAPDFYCITYIGDKDSRAVIRENELSFEEG 821
Query: 229 ----SKLCHDKLLACDFDICVASYEIIIREKASFKKIDWEYVVIDEAHRIKNEESMLS 282
SK+ + F++ + SYE+I + A IDW +V+DEAHR+K+ +S S
Sbjct: 822 AIRGSKVSRLRTTQYKFNVLLTSYELISMDAACLGSIDWAVLVVDEAHRLKSNQSKKS 879
>SPCC1620.14c [BK] KOG0386 Chromatin remodeling complex SWI/SNF component SWI2
and related ATPases (DNA/RNA helicase superfamily)
Length = 430
Score = 119 bits (298), Expect = 3e-26
Identities = 60/116 (51%), Positives = 79/116 (67%), Gaps = 4/116 (3%)
Query: 512 PDSKKFIFLLTTRAGGLGINLTTADIVVLYDSDWNPQADLQAMDRAHRIGQKKQVRVFRF 571
P S +IF+L+TRAGGLG+NL TAD V+++D+DWNP DLQA DRAHRIGQ K+VR+ R
Sbjct: 2 PKSDVYIFMLSTRAGGLGLNLQTADTVIIFDTDWNPHQDLQAQDRAHRIGQTKEVRILRL 61
Query: 572 VTDNSVEEKILERATQKLKLDQLVIQQGRVTXXXXXXXXDSKEGLL-SMIQHGAVD 626
+T+ S+EE IL RA KL LD VIQ G+ + +E L S+++H D
Sbjct: 62 ITEKSIEENILSRAQYKLDLDGKVIQAGK---FDNKSTPEEREAFLRSLLEHDGDD 114
>7296909 [B] KOG1000 Chromatin remodeling protein HARP/SMARCAL1 DEAD-box
superfamily
Length = 701
Score = 117 bits (293), Expect = 1e-25
Identities = 111/454 (24%), Positives = 196/454 (42%), Gaps = 59/454 (12%)
Query: 140 QLRPYQIQGLNWLVALHKNQLAGILADEMGLGKTLQTIAFLGYLRYIEKKNGPFLVIAPK 199
QL P+Q G+ + +A K ++ ++ DEMGLGKT Q +A Y K + P LV
Sbjct: 246 QLMPFQQDGVCFAIA-QKGRI--MICDEMGLGKTYQALAVADYF----KDDWPLLVCTTA 298
Query: 200 STLNNWLREINRWTPEVSAFILQGDKEERSKLCHDKLLACDFDICVASYEIIIREKASFK 259
ST ++W + I P+V +Q L +++L + + + SY ++ R +
Sbjct: 299 STRDSWAKHIMDLLPKVPIHYVQ-------VLNNNQLYVGEAKVLITSYNMMERHEDKLM 351
Query: 260 KIDWEYVVIDEAHRIKNEESMLSQVLREFSSRNR--LLITGTPLQNNLHELWALLNFLLP 317
+ + +++ DE+H +KN ++ + + + + + +L++GTP + EL+ L +
Sbjct: 352 QRKFGFIIFDESHTLKNSKAKCTTTAKRLTDQAKRVVLLSGTPALSRPLELFTQLQMIDG 411
Query: 318 DI--FADSATXXXXXXXXXXX--XXXXXVVKQLHTVLS-PFLLRRIKNDVEGSLLPKKEL 372
F + T +++L +L ++LRR K +V L K
Sbjct: 412 KFMNFMEFTTRYCDGKQSTFGWDANGQSNLEELKVILHLKYMLRRTKVEVLPQLAEKNRE 471
Query: 373 NVYVGMSSMQKKWYKQILEKDIDAVNGSNGQKESKTRLLNIVMQLRKCCNHPYLFDGAEP 432
V + + + W ++ +DA N KE KT
Sbjct: 472 TVVLDPALV---WTNAETKETLDAFN-----KELKT------------------------ 499
Query: 433 GPPYTTDEHLVYNSAXXXXXXXXXX-----XXXEQGSRVLIFSQMSRVLDILEDYCYFRE 487
T+E L+ A ++ + +IF+ ++D + D+ +
Sbjct: 500 AKGRATEEILLRFYARTAEVKTRAVCAYLKTLVKEQKKFIIFAHHRVMMDAISDFLSGLK 559
Query: 488 YEYCRIDGSTAHEDRINAIDDYNAPDSKKFIFLLTTRAGGLGINLTTADIVVLYDSDWNP 547
Y RIDG T + R +++D + S K + LL+ +A GI LT A+I+V + DWNP
Sbjct: 560 VHYIRIDGQTRSDHRSDSVDTFQKKSSCK-VALLSLKACNSGITLTAAEIIVFAELDWNP 618
Query: 548 QADLQAMDRAHRIGQKKQVRVFRFVTDNSVEEKI 581
QA RAHRIGQ K V + N+ ++ I
Sbjct: 619 STLAQAESRAHRIGQTKPVICRYLIAHNTADDII 652
>SPBC582.10c [KL] KOG1001 Helicase-like transcription factor HLTF/DNA helicase
RAD5 DEAD-box superfamily
Length = 830
Score = 115 bits (289), Expect = 3e-25
Identities = 92/329 (27%), Positives = 153/329 (45%), Gaps = 51/329 (15%)
Query: 140 QLRPYQIQGLNWLVALH----KNQLAGILADEMGLGKTLQTIAFLGYLRYIEKKNG--PF 193
+L +Q+QGL WL + + GILAD+MGLGKT+Q IA + +KK+
Sbjct: 232 RLLDHQVQGLTWLKSRETVSKSSASGGILADDMGLGKTIQMIALILSHPLPKKKHSIKST 291
Query: 194 LVIAPKSTLNNWLREINRWTPEVSAFILQG-DKEERSKLCHDKLLACDFDICVASYEIII 252
LV+AP S + W E+ + +++A + G + + K+ H+ +D+ + +Y+I++
Sbjct: 292 LVVAPLSLIKQWESEVQTKS-KLTAIVYHGASRYKLLKVIHE------YDVVITTYQILV 344
Query: 253 RE-----------------------KASFKKIDWEYVVIDEAHRIKNEESMLSQVLREFS 289
E K S W +++DEAH IKN+ S +
Sbjct: 345 SEWVSHNTTGTDGKSPTEAKSYEKKKPSLFAFYWWRIILDEAHTIKNKSSKSALACCALQ 404
Query: 290 SRNRLLITGTPLQNNLHELWALLNFLLPDIFADSATXXXXXXXXXXXXXXXXVVKQLHTV 349
NR +TGTPLQNN+ EL++L+ FL + F D + V K+L +
Sbjct: 405 GINRWCLTGTPLQNNVDELYSLVKFLHINPFNDQSVWKDQISLPLCQGEENLVFKRLRML 464
Query: 350 LSPFLLRRIKNDVE---------GSLLPKKEL--NVYVGMSSMQKKWYKQI---LEKDID 395
LS +LRR K +E G+L K L V ++ +Y + +E+ +
Sbjct: 465 LSVIMLRRTKTLLEANAGKDGTGGALKLSKRLVYKVICKFEESERDFYSNLARNMERTMS 524
Query: 396 AVNGSNGQKESKTRLLNIVMQLRKCCNHP 424
S ++ T +L ++++LR+ CNHP
Sbjct: 525 NFVNSGKLGKNYTNILCLLLRLRQACNHP 553
Score = 89.4 bits (220), Expect = 3e-17
Identities = 49/136 (36%), Positives = 78/136 (57%), Gaps = 1/136 (0%)
Query: 465 RVLIFSQMSRVLDILEDYCYFREYEYCRIDGSTAHEDRINAIDDYNAPDSKKFIFLLTTR 524
+ +IFSQ + LDI++ + + R DG + R ++D + DS + L + +
Sbjct: 672 KTIIFSQFTTFLDIIDLHLRKAGIGFVRYDGRMNNRAREKSLDLLRS-DSGTQVLLCSLK 730
Query: 525 AGGLGINLTTADIVVLYDSDWNPQADLQAMDRAHRIGQKKQVRVFRFVTDNSVEEKILER 584
G LG+NLT A V+L D WNP + QA+DR HRIGQ++ V V++ V +N++EEKI+E
Sbjct: 731 CGALGLNLTCASRVILCDVWWNPAIEEQAIDRVHRIGQRRDVLVYKLVVENTIEEKIVEL 790
Query: 585 ATQKLKLDQLVIQQGR 600
K L + + G+
Sbjct: 791 QNLKRDLAKQALGDGK 806
>Hs17437081 [B] KOG0389 SNF2 family DNA-dependent ATPase
Length = 619
Score = 113 bits (283), Expect = 1e-24
Identities = 55/102 (53%), Positives = 70/102 (67%), Gaps = 3/102 (2%)
Query: 132 ESPAYVNGQL--RPYQIQGLNWLVALHKNQLAGILADEMGLGKTLQTIAFLGYLRYIEKK 189
E P+ +N L +PYQ GLNWL +HK+ L GILADEMGLGKT+Q IAFL YL Y E
Sbjct: 486 EQPSILNQSLSLKPYQKVGLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYL-YQEGN 544
Query: 190 NGPFLVIAPKSTLNNWLREINRWTPEVSAFILQGDKEERSKL 231
NGP L++ P ST++NWLRE+N W P + G +EER ++
Sbjct: 545 NGPHLIVVPASTIDNWLREVNLWCPTLKVLCYYGSQEERKQI 586
>ECU06g0820 [B] KOG1000 Chromatin remodeling protein HARP/SMARCAL1 DEAD-box
superfamily
Length = 556
Score = 109 bits (272), Expect = 3e-23
Identities = 115/463 (24%), Positives = 193/463 (40%), Gaps = 69/463 (14%)
Query: 137 VNGQLRPYQIQGLNWLVALHKNQLAGILADEMGLGKTLQTIAFLGYLRYIEKKNGPFLVI 196
+ L P+Q +G+ AL++ I+AD+MGLGKT+Q +A Y R P ++I
Sbjct: 120 IYSMLLPFQREGVEH--ALNRGGRM-IVADDMGLGKTIQALAVAYYYR----AEWPLVII 172
Query: 197 APKSTLNNWLREINRWTPEVSAFILQGDKEERSKLCHDKLLACDFDICVASYEIIIREKA 256
AP S L +W R+ + A +++ KE+ + +I V SYE+ A
Sbjct: 173 APASLLEDWADACRRFLG-MEAMVMRR-KEDFGQ-----------EIGVVSYEVA-SSHA 218
Query: 257 SFKKIDWEYVVIDEAHRIKNEESMLSQVLREFSSR--NRLLITGTPLQNNLHELWALLNF 314
+ V+ DE H +K+ ++ ++ + + LL++GTP + EL+ +++
Sbjct: 219 NVLACGAGVVIADECHYLKSLQTKRTKAIVPLLQKVSRALLLSGTPAVSRPLELYPIISA 278
Query: 315 LLPDIFADSATXXXXXXXXXXXXXXXXV-----VKQLHTVLSPFLL-RRIKNDVEGSLLP 368
+ IF A ++LH VL FL+ RR K++V G L P
Sbjct: 279 VDRTIFPRFAEYGARYCNGRKVGQWYDYKGCSNAEELHYVLRKFLMIRRTKDEVLGQLPP 338
Query: 369 KKELNVYVGMSSMQKKWYKQILEKDIDAVNGSNGQKESKTRLLNIVMQLRKCCNHPYLFD 428
K V + + Q K ++ + +D N+VMQ R+
Sbjct: 339 KFRRQVVLECTGRQDDPRKDLVGESVDT---------------NVVMQYREAVGLK---- 379
Query: 429 GAEPGPPYTTDEHLVYNSAXXXXXXXXXXXXXEQGSRVLIFSQMSRVLDILEDYCYFREY 488
+P Y E+G + ++F + +++ LE + R
Sbjct: 380 -VDPVKQYLA-------------------TMVEKGMKFVVFCHHTEMMESLEGFFAERNV 419
Query: 489 EYCRIDGSTAHEDRINAIDDYNAPDSKKFIFLLTTRAGGLGINLTTADIVVLYDSDWNPQ 548
RIDGS R + + + + + LL+ A G+ LT VV + WNP
Sbjct: 420 PMIRIDGSVPSTSRHLLVKKFQE-NEEVMVALLSITACSTGLTLTAGRAVVFAELYWNPG 478
Query: 549 ADLQAMDRAHRIGQKKQVRVFRFVTDNSVEEKILERATQKLKL 591
LQA DR HRIGQK V + V +++E + + KL +
Sbjct: 479 VLLQAEDRIHRIGQKSSVDIIYLVAKGTIDEYVWPKLLSKLNV 521
>Hs21071060 [B] KOG1000 Chromatin remodeling protein HARP/SMARCAL1 DEAD-box
superfamily
Length = 954
Score = 108 bits (270), Expect = 5e-23
Identities = 106/463 (22%), Positives = 190/463 (40%), Gaps = 58/463 (12%)
Query: 141 LRPYQIQGLNWLVALHKNQLAGILADEMGLGKTLQTIAFLGYLRYIEKKNGPFLVIAPKS 200
L P+Q G+N+ +A L LAD+MGLGKT+Q I + R K P LV+ P S
Sbjct: 436 LMPFQRAGVNFAIAKGGRLL---LADDMGLGKTIQAICIAAFYR----KEWPLLVVVPSS 488
Query: 201 TLNNWLREINRWTPEVSAFILQGDKEERSKLCHDKLLACDFDICVASYEIIIREKASFKK 260
W + RW P +S + + +L + FD+ + + K
Sbjct: 489 VRFTWEQAFLRWLPSLSPDCINVVVTGKDRLTAGLINIVSFDL--------LSKLEKQLK 540
Query: 261 IDWEYVVIDEAHRIKNEESMLSQVLREFS--SRNRLLITGTPLQNNLHELWALLNFLLPD 318
++ V+IDE+H +KN + + ++ +L++GTP + EL+ + + P
Sbjct: 541 TPFKVVIIDESHFLKNSRTARCRAAMPVLKVAKRVILLSGTPAMSRPAELYTQIIAVKPT 600
Query: 319 IFADSATXXXXXXXXXXX-----XXXXXVVKQLHTVLSP-FLLRRIKNDVEGSLLPKKEL 372
F + +L +L +LRR+K+DV S LP K+
Sbjct: 601 FFPQFHAFGLRYCDAKRMPWGWDYSGSSNLGELKLLLEEAVMLRRLKSDVL-SQLPAKQR 659
Query: 373 NVYV---GMSSMQKKWYKQILEKDIDAVNGSNGQ-KESKTRLLNIVMQLRKCCNHPYLFD 428
+ V G + + + K++ + + Q K++ N + + Y+ D
Sbjct: 660 KIVVIAPGRINARTRAALDAAAKEMTTKDKTKQQQKDALILFFNRTAEAKIPSVIEYILD 719
Query: 429 GAEPGPPYTTDEHLVYNSAXXXXXXXXXXXXXEQGSRVLIFSQMSRVLDILEDYCYFREY 488
E G + L+F+ VLD + +
Sbjct: 720 LLESGR-----------------------------EKFLVFAHHKVVLDAITQELERKHV 750
Query: 489 EYCRIDGSTAHEDRINAIDDYNAPDSKKFIFLLTTRAGGLGINLTTADIVVLYDSDWNPQ 548
++ RIDGST+ +R + + + + + +L+ A +G+ ++AD+VV + WNP
Sbjct: 751 QHIRIDGSTSSAEREDLCQQFQLSE-RHAVAVLSITAANMGLTFSSADLVVFAELFWNPG 809
Query: 549 ADLQAMDRAHRIGQKKQVRVFRFVTDNSVEEKILERATQKLKL 591
+QA DR HRIGQ V + V + ++ + +K+K+
Sbjct: 810 VLIQAEDRVHRIGQTSSVGIHYLVAKGTADDYLWPLIQEKIKV 852
>At5g43530 [KL] KOG1001 Helicase-like transcription factor HLTF/DNA helicase
RAD5 DEAD-box superfamily
Length = 1277
Score = 102 bits (255), Expect = 3e-21
Identities = 85/310 (27%), Positives = 139/310 (44%), Gaps = 50/310 (16%)
Query: 162 GILADEMGLGKTLQTIAFL------------------------------GYLRYIEKKNG 191
GILAD MGLGKT+ TIA + L ++ K G
Sbjct: 683 GILADAMGLGKTVMTIALILARPGRGNPENEDVLVADVNADKRNRKEIHMALTTVKAKGG 742
Query: 192 PFLVIAPKSTLNNWLREINRWTPEVSAFILQGDKEERSKLCHDKLLACDFDICVASYEII 251
L+I P + L+ W E+ + + +L +R+ HD D+ + +Y ++
Sbjct: 743 T-LIICPMALLSQWKDELETHSKPDTVSVLVYYGGDRT---HDAKAIASHDVVLTTYGVL 798
Query: 252 IRE------KASFKKIDWEYVVIDEAHRIKNEESMLSQVLREFSSRNRLLITGTPLQNNL 305
+ F +IDW +V+DEAH IK+ ++ ++ E SS R +TGTPLQN L
Sbjct: 799 TSAYKQDMANSIFHRIDWYRIVLDEAHTIKSWKTQAAKATFELSSHCRWCLTGTPLQNKL 858
Query: 306 HELWALLNFLLPDIFADSATXXXXXXXXXXXXXXXXVVKQLHTVLSPFLLRRIK--NDVE 363
+L++LL FL + + + A +K + +L P +LRR K D E
Sbjct: 859 EDLYSLLCFLHVEPWCNWAWWSKLIQKPYENGDPRG-LKLIKAILRPLMLRRTKETRDKE 917
Query: 364 GSL---LPKKELNVY-VGMSSMQKKWYKQILEK---DIDAVNGSNGQKESKTRLLNIVMQ 416
GSL LP ++ V S ++ +Y + ++ D + +L ++++
Sbjct: 918 GSLILELPPTDVQVIECEQSEAERDFYTALFKRSKVQFDQFVAQGKVLHNYANILELLLR 977
Query: 417 LRKCCNHPYL 426
LR+CCNHP+L
Sbjct: 978 LRQCCNHPFL 987
Score = 95.5 bits (236), Expect = 4e-19
Identities = 50/129 (38%), Positives = 79/129 (60%), Gaps = 1/129 (0%)
Query: 463 GSRVLIFSQMSRVLDILEDYCYFREYEYCRIDGSTAHEDRINAIDDYNAPDSKKFIFLLT 522
G + ++FSQ + LD+LE R +E+ R DG A + R + ++N +K I L++
Sbjct: 1127 GEKSIVFSQWTSFLDLLEIPLRRRGFEFLRFDGKLAQKGREKVLKEFNET-KQKTILLMS 1185
Query: 523 TRAGGLGINLTTADIVVLYDSDWNPQADLQAMDRAHRIGQKKQVRVFRFVTDNSVEEKIL 582
+AGG+G+NLT A V L D WNP + QA+ R HRIGQK+ V V RF+ ++VEE++
Sbjct: 1186 LKAGGVGLNLTAASSVFLMDPWWNPAVEEQAIMRIHRIGQKRTVFVRRFIVKDTVEERMQ 1245
Query: 583 ERATQKLKL 591
+ +K ++
Sbjct: 1246 QVQARKQRM 1254
>Hs20336209 [K] KOG1015 Transcription regulator XNP/ATRX DEAD-box superfamily
Length = 2492
Score = 101 bits (251), Expect = 7e-21
Identities = 55/164 (33%), Positives = 91/164 (54%), Gaps = 23/164 (14%)
Query: 461 EQGSRVLIFSQMSRVLDILEDYC----------------------YFREYEYCRIDGSTA 498
E G +VL+FSQ LD++ED+ + R +Y R+DGST
Sbjct: 2032 EIGDKVLVFSQSLISLDLIEDFLELASREKTEDKDKPLIYKGEGKWLRNIDYYRLDGSTT 2091
Query: 499 HEDRINAIDDYNAPDSKKF-IFLLTTRAGGLGINLTTADIVVLYDSDWNPQADLQAMDRA 557
+ R +++N + + +F+++T+AG LGINL A+ V+++D+ WNP D+Q++ R
Sbjct: 2092 AQSRKKWAEEFNDETNVRGRLFIISTKAGSLGINLVAANRVIIFDASWNPSYDIQSIFRV 2151
Query: 558 HRIGQKKQVRVFRFVTDNSVEEKILERATQKLKLDQLVIQQGRV 601
+R GQ K V V+RF+ ++E+KI +R K L V+ Q +V
Sbjct: 2152 YRFGQTKPVYVYRFLAQGTMEDKIYDRQVTKQSLSFRVVDQQQV 2195
Score = 91.7 bits (226), Expect = 6e-18
Identities = 87/331 (26%), Positives = 148/331 (44%), Gaps = 47/331 (14%)
Query: 140 QLRPYQIQGLNWL--------VALHKNQLAG-ILADEMGLGKTLQTIAFLGYLRYIEKKN 190
+L+P+Q+ G+ ++ K+ +G ILA MGLGKTLQ ++FL + +K +
Sbjct: 1559 KLKPHQVDGVQFMWDCCCESVKKTKKSPGSGCILAHCMGLGKTLQVVSFLHTVLLCDKLD 1618
Query: 191 -GPFLVIAPKSTLNNWLREINRWTP--------EVSAFILQGDKEERSKLCHDKLLACDF 241
LV+ P +T NW+ E +W EVS +ERS + + D
Sbjct: 1619 FSTALVVCPLNTALNWMNEFEKWQEGLKDDEKLEVSELATVKRPQERSYML--QRWQEDG 1676
Query: 242 DICVASYEII-------------IREKASFKKIDW--EYVVIDEAHRIKNEESMLSQVLR 286
+ + YE+ ++E + +D ++VV DE H +KNE S +S+ +
Sbjct: 1677 GVMIIGYEMYRNLAQGRNVKSRKLKEIFNKALVDPGPDFVVCDEGHILKNEASAVSKAMN 1736
Query: 287 EFSSRNRLLITGTPLQNNLHELWALLNFLLPDIFADSATXXXXXXX-------XXXXXXX 339
SR R+++TGTPLQNNL E ++NF+ ++
Sbjct: 1737 SIRSRRRIILTGTPLQNNLIEYHCMVNFIKENLLGSIKEFRNRFINPIQNGQCADSTMVD 1796
Query: 340 XXVVKQ----LHTVLSPFLLRRIKNDVEGSLLPKKELNVYVGMSSMQKKWYKQILEKDID 395
V+K+ L+ +L+ + R+ + L PK E + V M+S+Q K Y+ L+
Sbjct: 1797 VRVMKKRAHILYEMLAGCVQRKDYTALTKFLPPKHEYVLAVRMTSIQCKLYQYYLDHLTG 1856
Query: 396 AVNGSNGQK-ESKTRLLNIVMQLRKCCNHPY 425
N S G + ++ +L L + HP+
Sbjct: 1857 VGNNSEGGRGKAGAKLFQDFQMLSRIWTHPW 1887
>Hs20336207 [K] KOG1015 Transcription regulator XNP/ATRX DEAD-box superfamily
Length = 2288
Score = 101 bits (251), Expect = 7e-21
Identities = 55/164 (33%), Positives = 91/164 (54%), Gaps = 23/164 (14%)
Query: 461 EQGSRVLIFSQMSRVLDILEDYC----------------------YFREYEYCRIDGSTA 498
E G +VL+FSQ LD++ED+ + R +Y R+DGST
Sbjct: 1828 EIGDKVLVFSQSLISLDLIEDFLELASREKTEDKDKPLIYKGEGKWLRNIDYYRLDGSTT 1887
Query: 499 HEDRINAIDDYNAPDSKKF-IFLLTTRAGGLGINLTTADIVVLYDSDWNPQADLQAMDRA 557
+ R +++N + + +F+++T+AG LGINL A+ V+++D+ WNP D+Q++ R
Sbjct: 1888 AQSRKKWAEEFNDETNVRGRLFIISTKAGSLGINLVAANRVIIFDASWNPSYDIQSIFRV 1947
Query: 558 HRIGQKKQVRVFRFVTDNSVEEKILERATQKLKLDQLVIQQGRV 601
+R GQ K V V+RF+ ++E+KI +R K L V+ Q +V
Sbjct: 1948 YRFGQTKPVYVYRFLAQGTMEDKIYDRQVTKQSLSFRVVDQQQV 1991
Score = 91.7 bits (226), Expect = 6e-18
Identities = 87/331 (26%), Positives = 148/331 (44%), Gaps = 47/331 (14%)
Query: 140 QLRPYQIQGLNWL--------VALHKNQLAG-ILADEMGLGKTLQTIAFLGYLRYIEKKN 190
+L+P+Q+ G+ ++ K+ +G ILA MGLGKTLQ ++FL + +K +
Sbjct: 1355 KLKPHQVDGVQFMWDCCCESVKKTKKSPGSGCILAHCMGLGKTLQVVSFLHTVLLCDKLD 1414
Query: 191 -GPFLVIAPKSTLNNWLREINRWTP--------EVSAFILQGDKEERSKLCHDKLLACDF 241
LV+ P +T NW+ E +W EVS +ERS + + D
Sbjct: 1415 FSTALVVCPLNTALNWMNEFEKWQEGLKDDEKLEVSELATVKRPQERSYML--QRWQEDG 1472
Query: 242 DICVASYEII-------------IREKASFKKIDW--EYVVIDEAHRIKNEESMLSQVLR 286
+ + YE+ ++E + +D ++VV DE H +KNE S +S+ +
Sbjct: 1473 GVMIIGYEMYRNLAQGRNVKSRKLKEIFNKALVDPGPDFVVCDEGHILKNEASAVSKAMN 1532
Query: 287 EFSSRNRLLITGTPLQNNLHELWALLNFLLPDIFADSATXXXXXXX-------XXXXXXX 339
SR R+++TGTPLQNNL E ++NF+ ++
Sbjct: 1533 SIRSRRRIILTGTPLQNNLIEYHCMVNFIKENLLGSIKEFRNRFINPIQNGQCADSTMVD 1592
Query: 340 XXVVKQ----LHTVLSPFLLRRIKNDVEGSLLPKKELNVYVGMSSMQKKWYKQILEKDID 395
V+K+ L+ +L+ + R+ + L PK E + V M+S+Q K Y+ L+
Sbjct: 1593 VRVMKKRAHILYEMLAGCVQRKDYTALTKFLPPKHEYVLAVRMTSIQCKLYQYYLDHLTG 1652
Query: 396 AVNGSNGQK-ESKTRLLNIVMQLRKCCNHPY 425
N S G + ++ +L L + HP+
Sbjct: 1653 VGNNSEGGRGKAGAKLFQDFQMLSRIWTHPW 1683
>Hs20336205 [K] KOG1015 Transcription regulator XNP/ATRX DEAD-box superfamily
Length = 2454
Score = 101 bits (251), Expect = 7e-21
Identities = 55/164 (33%), Positives = 91/164 (54%), Gaps = 23/164 (14%)
Query: 461 EQGSRVLIFSQMSRVLDILEDYC----------------------YFREYEYCRIDGSTA 498
E G +VL+FSQ LD++ED+ + R +Y R+DGST
Sbjct: 1994 EIGDKVLVFSQSLISLDLIEDFLELASREKTEDKDKPLIYKGEGKWLRNIDYYRLDGSTT 2053
Query: 499 HEDRINAIDDYNAPDSKKF-IFLLTTRAGGLGINLTTADIVVLYDSDWNPQADLQAMDRA 557
+ R +++N + + +F+++T+AG LGINL A+ V+++D+ WNP D+Q++ R
Sbjct: 2054 AQSRKKWAEEFNDETNVRGRLFIISTKAGSLGINLVAANRVIIFDASWNPSYDIQSIFRV 2113
Query: 558 HRIGQKKQVRVFRFVTDNSVEEKILERATQKLKLDQLVIQQGRV 601
+R GQ K V V+RF+ ++E+KI +R K L V+ Q +V
Sbjct: 2114 YRFGQTKPVYVYRFLAQGTMEDKIYDRQVTKQSLSFRVVDQQQV 2157
Score = 91.7 bits (226), Expect = 6e-18
Identities = 87/331 (26%), Positives = 148/331 (44%), Gaps = 47/331 (14%)
Query: 140 QLRPYQIQGLNWL--------VALHKNQLAG-ILADEMGLGKTLQTIAFLGYLRYIEKKN 190
+L+P+Q+ G+ ++ K+ +G ILA MGLGKTLQ ++FL + +K +
Sbjct: 1521 KLKPHQVDGVQFMWDCCCESVKKTKKSPGSGCILAHCMGLGKTLQVVSFLHTVLLCDKLD 1580
Query: 191 -GPFLVIAPKSTLNNWLREINRWTP--------EVSAFILQGDKEERSKLCHDKLLACDF 241
LV+ P +T NW+ E +W EVS +ERS + + D
Sbjct: 1581 FSTALVVCPLNTALNWMNEFEKWQEGLKDDEKLEVSELATVKRPQERSYML--QRWQEDG 1638
Query: 242 DICVASYEII-------------IREKASFKKIDW--EYVVIDEAHRIKNEESMLSQVLR 286
+ + YE+ ++E + +D ++VV DE H +KNE S +S+ +
Sbjct: 1639 GVMIIGYEMYRNLAQGRNVKSRKLKEIFNKALVDPGPDFVVCDEGHILKNEASAVSKAMN 1698
Query: 287 EFSSRNRLLITGTPLQNNLHELWALLNFLLPDIFADSATXXXXXXX-------XXXXXXX 339
SR R+++TGTPLQNNL E ++NF+ ++
Sbjct: 1699 SIRSRRRIILTGTPLQNNLIEYHCMVNFIKENLLGSIKEFRNRFINPIQNGQCADSTMVD 1758
Query: 340 XXVVKQ----LHTVLSPFLLRRIKNDVEGSLLPKKELNVYVGMSSMQKKWYKQILEKDID 395
V+K+ L+ +L+ + R+ + L PK E + V M+S+Q K Y+ L+
Sbjct: 1759 VRVMKKRAHILYEMLAGCVQRKDYTALTKFLPPKHEYVLAVRMTSIQCKLYQYYLDHLTG 1818
Query: 396 AVNGSNGQK-ESKTRLLNIVMQLRKCCNHPY 425
N S G + ++ +L L + HP+
Sbjct: 1819 VGNNSEGGRGKAGAKLFQDFQMLSRIWTHPW 1849
>At3g24340 [L] KOG0390 DNA repair protein SNF2 family
Length = 1132
Score = 100 bits (250), Expect = 1e-20
Identities = 120/504 (23%), Positives = 210/504 (40%), Gaps = 52/504 (10%)
Query: 163 ILADEMGLGKTLQTIAFL-GYLRYIEKKNGPFLVIAPKSTLNNWLREINRWTPEVSAFIL 221
I++ + G GKT T+ FL YL+ N +VIAP + + W E+ +W + + +
Sbjct: 613 IISHKAGTGKTRLTVVFLQSYLKRFP--NSHPMVIAPATLMRTWEDEVRKWNVNIPFYNM 670
Query: 222 QG-------DKEERSKL----CHDKLLACDF----------DICVASYEIIIREKAS--- 257
D E S+L H+ + I YE + K +
Sbjct: 671 NSLQLSGYEDAEAVSRLEGNRHHNSIRMVKLVSWWKQKSILGISYPLYEKLAANKNTEGM 730
Query: 258 --FKKIDWEY---VVIDEAHRIKNEESMLSQVLREFSSRNRLLITGTPLQNNLHELWALL 312
F+++ E +V+DE H +N+ S++ +VL E + R+ ++GT QNN EL +L
Sbjct: 731 QVFRRMLVELPGLLVLDEGHTPRNQSSLIWKVLTEVRTEKRIFLSGTLFQNNFKELSNVL 790
Query: 313 NFLLPDIFADSATXXXXXXXXXXXXXXXXVVKQLHTVLSPFLLRRIKNDVEGSLLPK--- 369
P ++ V ++ V ++ + EG++L +
Sbjct: 791 CLARPADKDTISSRIHELSKCSQEGEHGRVNEENRIVDLKAMIAHFVHVHEGTILQESLP 850
Query: 370 --KELNVYVGMSSMQKKWYKQILEKDIDAVNGSNGQKESKTRLLNIVMQLRKCCNHPYLF 427
++ V + QKK IL++ ID + + + E K +++ L CCN
Sbjct: 851 GLRDCVVVLNPPFQQKK----ILDR-IDT-SQNTFEFEHKLSAVSVHPSLYLCCNPTKKE 904
Query: 428 DGAEPGPPYTTDEHLVYNSAXXXXXXXXXXXXXEQGS---RVLIFSQMSRVLDILEDY-- 482
D T + L G+ +VL++SQ L ++ +
Sbjct: 905 DLVIGPATLGTLKRLRLKYEEGVKTKFLIDFIRISGTVKEKVLVYSQYIDTLKLIMEQLI 964
Query: 483 --CYFREYEYCRI-DGSTAHEDRINAIDDYNAPDSKKFIFLLTTRAGGLGINLTTADIVV 539
C + E E + G DR + ID++N PDS + L +T+A GI+L A VV
Sbjct: 965 AECDWTEGEQILLMHGKVEQRDRQHMIDNFNKPDSGSKVLLASTKACSEGISLVGASRVV 1024
Query: 540 LYDSDWNPQADLQAMDRAHRIGQKKQVRVFRFVTDNSVEEKILERATQKLKLDQLVIQQG 599
+ D WNP + QA+ RA RIGQK+ V ++ + ++ E + ++K ++ +LV
Sbjct: 1025 ILDVVWNPSVESQAISRAFRIGQKRAVFIYHLMVKDTSEWNKYCKQSEKHRISELVFSST 1084
Query: 600 RVTXXXXXXXXDSKEGLL-SMIQH 622
SK+ +L M++H
Sbjct: 1085 NEKDKPINNEVVSKDRILDEMVRH 1108
>At5g22750 [KL] KOG1001 Helicase-like transcription factor HLTF/DNA helicase
RAD5 DEAD-box superfamily
Length = 1029
Score = 100 bits (249), Expect = 1e-20
Identities = 101/404 (25%), Positives = 159/404 (39%), Gaps = 113/404 (27%)
Query: 132 ESPAYVNGQLRPYQIQGLNWLVALHKN--------------------------------- 158
E+P + +LRPYQ Q L+W+ L K
Sbjct: 339 ETPHTLLCELRPYQKQALHWMTQLEKGNCTDEAATMLHPCWEAYCLADKRELVVYLNSFT 398
Query: 159 -----------QLA--GILADEMGLGKTLQTIAFL----------GYL------------ 183
Q+A GILAD MGLGKT+ TI+ L G+L
Sbjct: 399 GDATIHFPSTLQMARGGILADAMGLGKTVMTISLLLAHSWKAASTGFLCPNYEGDKVISS 458
Query: 184 --------------------RYIEKK----NGPFLVIAPKSTLNNWLREINRWTPEVSAF 219
R +E+K NG L++ P + L W EI S
Sbjct: 459 SVDDLTSPPVKATKFLGFDKRLLEQKSVLQNGGNLIVCPMTLLGQWKTEIEMHAKPGSLS 518
Query: 220 ILQGDKEERSKLCHDKLLACDFDICVASYEIIIREKASFKKID--------WEYVVIDEA 271
+ + R K D L D+ + +Y ++ E + D W +V+DEA
Sbjct: 519 VYVHYGQSRPK---DAKLLSQSDVVITTYGVLTSEFSQENSADHEGIYAVRWFRIVLDEA 575
Query: 272 HRIKNEESMLSQVLREFSSRNRLLITGTPLQNNLHELWALLNFLLPDIFADSATXXXXXX 331
H IKN +S +S + R +TGTP+QNNL +L++LL FL + + A
Sbjct: 576 HTIKNSKSQISLAAAALVADRRWCLTGTPIQNNLEDLYSLLRFLRIEPWGTWAWWNKLVQ 635
Query: 332 XXXXXXXXXXVVKQLHTVLSPFLLRRIKN--DVEGS---LLPKKELNV-YVGMSSMQKKW 385
+K + ++L P +LRR K+ D EG +LP + V Y +S ++ +
Sbjct: 636 KPFEEGDERG-LKLVQSILKPIMLRRTKSSTDREGRPILVLPPADARVIYCELSESERDF 694
Query: 386 YKQILEKD---IDAVNGSNGQKESKTRLLNIVMQLRKCCNHPYL 426
Y + ++ D + +L ++++LR+CC+HP+L
Sbjct: 695 YDALFKRSKVKFDQFVEQGKVLHNYASILELLLRLRQCCDHPFL 738
Score = 88.2 bits (217), Expect = 6e-17
Identities = 42/119 (35%), Positives = 73/119 (61%), Gaps = 1/119 (0%)
Query: 463 GSRVLIFSQMSRVLDILEDYCYFREYEYCRIDGSTAHEDRINAIDDYNAPDSKKFIFLLT 522
GS+ ++FSQ + LD+L+ + + R+DG+ + + R + +++ D + L++
Sbjct: 879 GSKSILFSQWTAFLDLLQIPLSRNNFSFVRLDGTLSQQQREKVLKEFSE-DGSILVLLMS 937
Query: 523 TRAGGLGINLTTADIVVLYDSDWNPQADLQAMDRAHRIGQKKQVRVFRFVTDNSVEEKI 581
+AGG+GINLT A + D WNP + QA+ R HRIGQ K+V++ RF+ +VEE++
Sbjct: 938 LKAGGVGINLTAASNAFVMDPWWNPAVEEQAVMRIHRIGQTKEVKIRRFIVKGTVEERM 996
>At1g08600 [K] KOG1015 Transcription regulator XNP/ATRX DEAD-box superfamily
Length = 1447
Score = 100 bits (248), Expect = 2e-20
Identities = 67/195 (34%), Positives = 100/195 (50%), Gaps = 20/195 (10%)
Query: 463 GSRVLIFSQMSRVLDILEDYC------------YFREYEYCRIDGSTAHEDRINAIDDYN 510
G + L+FSQ LD++E Y + + ++ RIDG T +R +D +N
Sbjct: 1099 GDKALVFSQSIPTLDLIELYLSRVPRHGKQGKFWKKGKDWYRIDGKTESSERQKLVDRFN 1158
Query: 511 APDSKKF-IFLLTTRAGGLGINLTTADIVVLYDSDWNPQADLQAMDRAHRIGQKKQVRVF 569
PD+K+ L++TRAG LGINL A+ V++ D WNP DLQA+ RA R GQKK V +
Sbjct: 1159 EPDNKRVKCTLISTRAGSLGINLYAANRVIIVDGSWNPTYDLQAIFRAWRYGQKKPVFAY 1218
Query: 570 RFVTDNSVEEKILERATQKLKLDQLVIQQGRVTXXXXXXXXDSKEGLLSMIQHGAVDVFK 629
R + ++EEKI +R K L V+ + +V SKE +L + + D K
Sbjct: 1219 RLMARGTIEEKIYKRQVTKEGLAARVVDRQQVHRTI------SKEEMLHLFEFDDDDE-K 1271
Query: 630 SNDSSAMTSQTGTPH 644
S + ++ Q H
Sbjct: 1272 SEAVTEISKQNEAGH 1286
>SPBC23E6.02 [KL] KOG1001 Helicase-like transcription factor HLTF/DNA helicase
RAD5 DEAD-box superfamily
Length = 1040
Score = 99.8 bits (247), Expect = 2e-20
Identities = 92/340 (27%), Positives = 150/340 (44%), Gaps = 52/340 (15%)
Query: 133 SPAYVNGQLRPYQIQGLNWLVALHKN-QLAGILADEMGLGKTLQTIAFLGYLRYIEKKNG 191
+PA + L +Q +GL WL L ++ + GILAD+MGLGKT+Q +A L K
Sbjct: 382 TPAGLIPTLMEHQKEGLMWLKRLEESSKKGGILADDMGLGKTVQALALLVTRPPESKSVK 441
Query: 192 PFLVIAPKSTLNNWLREI-NRWTPEVSAFILQGDKEERSKLCHDKLLACDFDICVASYEI 250
L+I P S L W EI + P + + ++L++ +DI + +Y +
Sbjct: 442 TTLIITPVSLLQQWHNEILTKIAPSHRPTVYIHHGSSKKHKIAEQLMS--YDIVLTTYNV 499
Query: 251 I-------------IREKASFKKID--------WEYVVIDEAHRIKNEESMLSQVLREFS 289
I I + A KK + W V++DEA IKN ++ ++
Sbjct: 500 IAYEFKNKMAYDKSIEDNAPIKKFEHLPFFEAEWYRVILDEAQTIKNRNTLAARGCCLLE 559
Query: 290 SRNRLLITGTPLQNNLHELWALLNFLLPDIFAD-SATXXXXXXXXXXXXXXXXVVKQLHT 348
S R ++GTP+QN + E ++L+ FL ++D S+ +K+
Sbjct: 560 STYRWCLSGTPMQNGVEEFYSLIKFLRIKPYSDWSSFSKDFTIPLSSNINTSAPMKRFRG 619
Query: 349 VLSPFLLRRIKN-DVEG----SLLPKKELNVYVGMSSMQKKWY------------KQILE 391
+L LLRR KN ++G +L PK + +SS + ++Y K + E
Sbjct: 620 LLKAVLLRRTKNTKIDGKPILTLPPKTAVKSETDLSSSEMEFYNTLQSGAQIQMRKYLQE 679
Query: 392 KDIDAVNGSNGQKESKTRLLNIVMQLRKCCNHPYLFDGAE 431
I GS LL ++++LR+ C HP+L E
Sbjct: 680 GTITTHYGS---------LLVLLLRLRQACCHPWLIVARE 710
Score = 85.1 bits (209), Expect = 5e-16
Identities = 45/127 (35%), Positives = 74/127 (57%), Gaps = 1/127 (0%)
Query: 465 RVLIFSQMSRVLDILEDYCYFREYEYCRIDGSTAHEDRINAIDDYNAPDSKKFIFLLTTR 524
++LIFSQ L++ +Y G + +R A+ ++ D + L++ +
Sbjct: 885 KILIFSQFVSFLELFTVPFRQEGIKYLMYTGGLSTAERNQALINFEV-DPNVRVLLISLK 943
Query: 525 AGGLGINLTTADIVVLYDSDWNPQADLQAMDRAHRIGQKKQVRVFRFVTDNSVEEKILER 584
AG +G+NLT A+ V++ D WNP + QA+DRAHRIGQ K V + R VT+N++EE++L
Sbjct: 944 AGNVGLNLTCANHVIILDPFWNPYIEEQAVDRAHRIGQDKPVNILRIVTNNTIEERVLAL 1003
Query: 585 ATQKLKL 591
+K +L
Sbjct: 1004 QDRKREL 1010
>CE17477 [R] KOG1016 Predicted DNA helicase DEAD-box superfamily
Length = 1274
Score = 99.4 bits (246), Expect = 3e-20
Identities = 57/153 (37%), Positives = 85/153 (55%), Gaps = 15/153 (9%)
Query: 463 GSRVLIFSQMSRVLDILEDYCYFREYE--------------YCRIDGSTAHEDRINAIDD 508
G ++LIFSQ LD+LE+ R+ Y R+DG+T+ DR I+
Sbjct: 793 GEKILIFSQNLTALDMLEEILKKRQIRGKDGPGQRWEKNRNYLRLDGTTSGADREKLINR 852
Query: 509 YNAPDSKKFIFLLTTRAGGLGINLTTADIVVLYDSDWNPQADLQAMDRAHRIGQKKQVRV 568
+N+ +FL++TRAG LGINL +A+ ++ D+ WNP D QA+ R +R GQ+K+ V
Sbjct: 853 FNSEPGLS-LFLISTRAGSLGINLVSANRCIIIDACWNPCHDAQAVCRVYRYGQQKKTFV 911
Query: 569 FRFVTDNSVEEKILERATQKLKLDQLVIQQGRV 601
+R + DNS+E I R K L Q V+ +V
Sbjct: 912 YRLIMDNSMERSIFNRQISKHGLQQRVVDDAQV 944
>YBR114w [L] KOG1002 Nucleotide excision repair protein RAD16
Length = 790
Score = 99.0 bits (245), Expect = 4e-20
Identities = 66/206 (32%), Positives = 112/206 (54%), Gaps = 28/206 (13%)
Query: 129 QFRESPAYVNGQLRPYQIQGLNWLVALHKNQLAG-ILADEMGLGKTLQTIAFLGYLRYIE 187
Q + P + +L P+Q++GL+WL++ ++ AG +LADEMG+GKT+QTIA L +
Sbjct: 172 QRSKQPDGMTIKLLPFQLEGLHWLISQEESIYAGGVLADEMGMGKTIQTIALL----MND 227
Query: 188 KKNGPFLVIAPKSTLNNWLREINRWTP-EVSAFILQGDKEERSKLCHDKLLACDFDICVA 246
P LV+AP L W EI + T ++ +I G S+ K L +D+ +
Sbjct: 228 LTKSPSLVVAPTVALMQWKNEIEQHTKGQLKIYIYHG----ASRTTDIKDLQ-GYDVVLT 282
Query: 247 SYEIII-----------REKASFKK------IDWEYVVIDEAHRIKNEESMLSQVLREFS 289
+Y ++ R+ FK+ ID+ V++DEAH IK+ +S ++ +
Sbjct: 283 TYAVLESVFRKQNYGFRRKNGLFKQPSVLHNIDFYRVILDEAHNIKDRQSNTARAVNNLK 342
Query: 290 SRNRLLITGTPLQNNLHELWALLNFL 315
++ R ++GTPLQN + E+++L+ FL
Sbjct: 343 TQKRWCLSGTPLQNRIGEMYSLIRFL 368
Score = 77.8 bits (190), Expect = 9e-14
Identities = 42/132 (31%), Positives = 74/132 (55%), Gaps = 1/132 (0%)
Query: 467 LIFSQMSRVLDILEDYCYFREYEYCRIDGSTAHEDRINAIDDYNAPDSKKFIFLLTTRAG 526
++FSQ + +LD++E ++ ++ GS + R I Y + + +FL++ +AG
Sbjct: 641 IVFSQFTSMLDLVEWRLKRAGFQTVKLQGSMSPTQRDETIK-YFMNNIQCEVFLVSLKAG 699
Query: 527 GLGINLTTADIVVLYDSDWNPQADLQAMDRAHRIGQKKQVRVFRFVTDNSVEEKILERAT 586
G+ +NL A V + D WNP + Q+ DR HRIGQ + V++ RF ++S+E +I+E
Sbjct: 700 GVALNLCEASQVFILDPWWNPSVEWQSGDRVHRIGQYRPVKITRFCIEDSIEARIIELQE 759
Query: 587 QKLKLDQLVIQQ 598
+K + I Q
Sbjct: 760 KKANMIHATINQ 771
>7301343 [K] KOG1015 Transcription regulator XNP/ATRX DEAD-box superfamily
Length = 1311
Score = 97.8 bits (242), Expect = 8e-20
Identities = 83/328 (25%), Positives = 142/328 (42%), Gaps = 45/328 (13%)
Query: 140 QLRPYQIQGLNWL---------VALHKNQLAGILADEMGLGKTLQTIAFLGYLRYIEKKN 190
+L+P+Q+ G+ ++ + K ILA MGLGKTLQ + L ++
Sbjct: 454 KLKPHQVAGVKFMWDACFETLKESQEKPGSGCILAHCMGLGKTLQVVTLSHTLLVNTRRT 513
Query: 191 GP--FLVIAPKSTLNNWLREINRWTP-----EVSAFILQGDKEERSKLCHDKLLACDFDI 243
G L+I+P ST+NNW RE W ++ + + K++ +++ + +
Sbjct: 514 GVDRVLIISPLSTVNNWAREFTSWMKFANRNDIEVYDISRYKDKPTRIFKLNEWFNEGGV 573
Query: 244 CVASYE---IIIREKAS-FKKIDWEY------------VVIDEAHRIKNEESMLSQVLRE 287
C+ Y+ I+ EKA +K E VV DE H +KNE++ +S+ +
Sbjct: 574 CILGYDMYRILANEKAKGLRKKQREQLMQALVDPGPDLVVCDEGHLLKNEKTSISKAVTR 633
Query: 288 FSSRNRLLITGTPLQNNLHELWALLNFLLPDIFADSATXXXXXXXXXXXXXXXXVVKQ-- 345
++ R+++TGTPLQNNL E + ++ F+ P++ ++
Sbjct: 634 MRTKRRIVLTGTPLQNNLREYYCMIQFVKPNLLGTYKEYMNRFVNPITNGQYTDSTERDL 693
Query: 346 ---------LHTVLSPFLLRRIKNDVEGSLLPKKELNVYVGMSSMQKKWYKQILEKDIDA 396
LH +L + RR + + L PK E VY +S +Q+K Y + +
Sbjct: 694 RLMKHRSHILHKLLEGCIQRRDYSVLAPYLPPKHEYVVYTTLSELQQKLYGYYMTTHREQ 753
Query: 397 VNGSNGQKESKTRLLNIVMQLRKCCNHP 424
G K + RL LR+ HP
Sbjct: 754 SGGDVVGKGA--RLFQDFQDLRRIWTHP 779
Score = 90.5 bits (223), Expect = 1e-17
Identities = 51/163 (31%), Positives = 86/163 (52%), Gaps = 23/163 (14%)
Query: 463 GSRVLIFSQMSRVLDILEDY----------------------CYFREYEYCRIDGSTAHE 500
G ++L+FSQ + LD++E + C+ +Y R+DGS + E
Sbjct: 914 GDKLLVFSQSLQSLDVIEHFLSLVDSNTKNYEFEGDVGDFKGCWTSGKDYFRLDGSCSVE 973
Query: 501 DRINAIDDYN-APDSKKFIFLLTTRAGGLGINLTTADIVVLYDSDWNPQADLQAMDRAHR 559
R +N + + +FL++TRAGGLGINL A+ VV++D WNP D Q++ R +R
Sbjct: 974 QREAMCKQFNNITNLRARLFLISTRAGGLGINLVAANRVVIFDVSWNPSHDTQSIFRVYR 1033
Query: 560 IGQKKQVRVFRFVTDNSVEEKILERATQKLKLDQLVIQQGRVT 602
GQ K ++R + ++E+K+ ER K + VI + +++
Sbjct: 1034 FGQIKPCYIYRLIAMGTMEQKVYERQVAKQATAKRVIDEQQIS 1076
>SPCC330.01c [L] KOG1002 Nucleotide excision repair protein RAD16
Length = 963
Score = 96.7 bits (239), Expect = 2e-19
Identities = 65/209 (31%), Positives = 110/209 (52%), Gaps = 28/209 (13%)
Query: 132 ESPAYVNGQLRPYQIQGLNWLVALHKNQLAG-ILADEMGLGKTLQTIAFLGYLRYIEKKN 190
E P + L P+Q +G+ WL + G ILADEMG+GKT+QTIA L E +
Sbjct: 348 EQPKELVLNLLPFQREGVYWLKRQEDSSFGGGILADEMGMGKTIQTIALL----LSEPRG 403
Query: 191 GPFLVIAPKSTLNNWLREINRWTPE-VSAFILQGDKEERSKLCHDKLLACDFDICVASYE 249
P LV+AP + W EI+ T + +S ++ G + S ++L + +D+ + SY
Sbjct: 404 KPTLVVAPVVAIMQWKEEIDTHTNKALSTYLYYGQARDISG---EELSS--YDVVLTSYN 458
Query: 250 II-----------------IREKASFKKIDWEYVVIDEAHRIKNEESMLSQVLREFSSRN 292
+I ++EK+ ++++ +++DEAH IK+ ++ + +
Sbjct: 459 VIESVYRKERSGFRRKNGVVKEKSLLHQMEFYRIILDEAHGIKSRTCNTARAVCGLRTTR 518
Query: 293 RLLITGTPLQNNLHELWALLNFLLPDIFA 321
++ ++GTPLQN + EL++LL FL D FA
Sbjct: 519 KICLSGTPLQNRIGELFSLLRFLRADPFA 547
Score = 83.2 bits (204), Expect = 2e-15
Identities = 45/132 (34%), Positives = 73/132 (55%), Gaps = 1/132 (0%)
Query: 467 LIFSQMSRVLDILEDYCYFREYEYCRIDGSTAHEDRINAIDDYNAPDSKKFIFLLTTRAG 526
++FSQ + +LD++ + ++DG + R I+ ++ D IFL++ +AG
Sbjct: 814 IVFSQFTSMLDLIHWRLRKAGFNCVKLDGGMTPKARAATIEAFSN-DINITIFLVSLKAG 872
Query: 527 GLGINLTTADIVVLYDSDWNPQADLQAMDRAHRIGQKKQVRVFRFVTDNSVEEKILERAT 586
G+ +NLT A V + D WN QAMDR HRIGQK+ ++V +NS+E KI+E
Sbjct: 873 GVALNLTEASQVFMMDPWWNGAVQWQAMDRIHRIGQKRPIKVITLCIENSIESKIIELQE 932
Query: 587 QKLKLDQLVIQQ 598
+K ++ I Q
Sbjct: 933 KKAQMIHATIDQ 944
>Hs20538502 [R] KOG1016 Predicted DNA helicase DEAD-box superfamily
Length = 1359
Score = 96.7 bits (239), Expect = 2e-19
Identities = 54/153 (35%), Positives = 85/153 (55%), Gaps = 19/153 (12%)
Query: 463 GSRVLIFSQMSRVLDILEDYC------------------YFREYEYCRIDGSTAHEDRIN 504
G ++L+FSQ L ++E++ + R Y R+DGST +R
Sbjct: 629 GDKILVFSQSLSTLALIEEFLGKREVPCPPGTEGQGAQKWVRNISYFRLDGSTPAFERER 688
Query: 505 AIDDYNAPDS-KKFIFLLTTRAGGLGINLTTADIVVLYDSDWNPQADLQAMDRAHRIGQK 563
I+ +N P + ++FLL+TRAG LG+NL A+ VV++D+ WNP D QA+ R +R GQK
Sbjct: 689 LINQFNDPSNLTTWLFLLSTRAGCLGVNLIGANRVVVFDASWNPCHDAQAVCRVYRYGQK 748
Query: 564 KQVRVFRFVTDNSVEEKILERATQKLKLDQLVI 596
K ++R V D ++E+KI +R K + V+
Sbjct: 749 KPCYIYRLVADYTLEKKIYDRQISKQGMSDRVV 781
Score = 89.7 bits (221), Expect = 2e-17
Identities = 98/364 (26%), Positives = 149/364 (40%), Gaps = 89/364 (24%)
Query: 141 LRPYQIQGLNWLV-----ALHKNQLAG----ILADEMGLGKTLQTIAFLGYL-RYIEKKN 190
++P+QI G+ +L +L + + + ILA MGLGKTLQ I+F+ L R+ K
Sbjct: 163 VKPHQIGGIRFLYDNLVESLERFKTSSGFGCILAHSMGLGKTLQVISFIDVLFRHTPAKT 222
Query: 191 GPFLVIAPKSTLNNWLREINRWTPEVSAFILQGDKEE---------------RSKLCHDK 235
L I P +TL NWL E N W P A EE ++ K
Sbjct: 223 --VLAIVPVNTLQNWLAEFNMWLPPPEALPADNKPEEVQPRFFKVHILNDEHKTMASRAK 280
Query: 236 LLA---CDFDICVASYEI--IIREKASF--------KKIDWEYVV-IDE----------- 270
++A + + + YE+ ++ K SF KK ++ +DE
Sbjct: 281 VMADWVSEGGVLLMGYEMYRLLTLKKSFATGRPKKTKKRSHPVIIDLDEEDRQQEFRREF 340
Query: 271 ----------------AHRIKNEESMLSQVLREFSSRNRLLITGTPLQNNLHELWALLNF 314
HRIKN ++ SQ L+ SR R+++TG PLQNNL E W +++F
Sbjct: 341 EKALCRPGPDVVICDEGHRIKNCQASTSQALKNIRSRRRVVLTGYPLQNNLIEYWCMVDF 400
Query: 315 LLPDIFADSATXXXXXXXXXXXXXXXXVVKQ-----------LHTVLSPFLLRRIKNDVE 363
+ PD Q LH++L F+ RR ++
Sbjct: 401 VRPDFLGTRQEFSNMFERPILNGQCIDSTPQDVRLMRYRSHVLHSLLEGFVQRRGHTVLK 460
Query: 364 GSLLPKKELNVYVGMSSMQKKWYKQILEKDIDAVNGSNGQKESKTRLLNIVMQLRKCC-- 421
L K+E + V +S +Q+ Y Q +++ D GS+G LN + CC
Sbjct: 461 IHLPAKEENVILVRLSKIQRDLYTQFMDRFRDC--GSSGWLG-----LNPLKAFCVCCKI 513
Query: 422 -NHP 424
NHP
Sbjct: 514 WNHP 517
>SPAC17A2.12 [KL] KOG1001 Helicase-like transcription factor HLTF/DNA helicase
RAD5 DEAD-box superfamily
Length = 897
Score = 95.1 bits (235), Expect = 5e-19
Identities = 77/338 (22%), Positives = 153/338 (44%), Gaps = 41/338 (12%)
Query: 126 VDFQFRESPAYVNG---QLRPYQIQGLNWLVALHKN-QLAGILADEMGLGKTLQTIAFLG 181
+D Q + G L P+Q++G W+ ++ ++ + G++AD+MGLGKT+QTIA L
Sbjct: 232 IDLQLKNEQVQSAGLLVSLLPHQVEGHAWMESMEQSSKCGGVMADDMGLGKTIQTIALLL 291
Query: 182 YLRYIEKKNGPFLVIAPKSTLNNWLREINRW---TPEVSAFILQGDKEERSKLCHDKLLA 238
+ + L++ + L+ W E++ + ++S +I G ++ D
Sbjct: 292 TQKSQDPLRKTNLIVVSVALLHQWAEELSTKVHPSKKLSVYIHHGSTKKNL----DSYEL 347
Query: 239 CDFDICVASYEIIIREK-------------------ASFKKIDWEYVVIDEAHRIKNEES 279
+D+ + +Y ++ E S + W +V+DEAH I+N ++
Sbjct: 348 SQYDVVLTTYSMLAYEMKQNDAFNNNNPATATPPPACSLLETSWYRIVLDEAHTIRNRDT 407
Query: 280 MLSQVLREFSSRNRLLITGTPLQNNLHELWALLNFLLPD---IFADSATXXXXXXXXXXX 336
+ ++ + ++ R ++GTP+QN++ E ++LL FL +++ A
Sbjct: 408 LAAKCCVKLDAKYRWCLSGTPIQNHIDEFYSLLKFLRIKPYCVWSLFAKDISRPLKSYRA 467
Query: 337 XXXXXVVKQLHTVLSPFLLRRIKNDVEGSL----LPKKEL-NVYVGMSSMQKKWYKQILE 391
+K+L +L+ + RR K +L LP K + V V + ++ Y + +
Sbjct: 468 DIVEAALKRLRILLASTVFRRTKETRVNNLPIVNLPPKTIRTVSVNLLPEERALYNEQMS 527
Query: 392 KDIDAVNGSNGQKESKTR---LLNIVMQLRKCCNHPYL 426
V+ +R LL +++LR+ C HP+L
Sbjct: 528 SAQSLVDNYFNNDHDLSRYGFLLVSLLRLRQFCCHPWL 565
Score = 88.2 bits (217), Expect = 6e-17
Identities = 42/131 (32%), Positives = 80/131 (61%), Gaps = 1/131 (0%)
Query: 461 EQGSRVLIFSQMSRVLDILEDYCYFREYEYCRIDGSTAHEDRINAIDDYNAPDSKKFIFL 520
++ ++L++SQ S+ L ++ + R DG+ + R ++ +N D + L
Sbjct: 739 KRNEKILVYSQFSQYLCLVSHMLKLENIRHVRYDGTMSANQRQKSLHSFNN-DKDVLVML 797
Query: 521 LTTRAGGLGINLTTADIVVLYDSDWNPQADLQAMDRAHRIGQKKQVRVFRFVTDNSVEEK 580
++ +AG +G+NLT A+ V+L + +NP + QA+DR HR+GQ+K V V+RF+T +++EE+
Sbjct: 798 VSLKAGSVGLNLTIANHVILQEPFYNPSIEDQAIDRVHRLGQQKPVTVYRFITKDTIEER 857
Query: 581 ILERATQKLKL 591
I+ +K +L
Sbjct: 858 IVSVQRKKRQL 868
>At5g05130 [KL] KOG1001 Helicase-like transcription factor HLTF/DNA helicase
RAD5 DEAD-box superfamily
Length = 881
Score = 93.6 bits (231), Expect = 2e-18
Identities = 48/129 (37%), Positives = 77/129 (59%), Gaps = 1/129 (0%)
Query: 464 SRVLIFSQMSRVLDILEDYCYFREYEYCRIDGSTAHEDRINAIDDYNAPD-SKKFIFLLT 522
++ ++FSQ ++L +LE + R+DG+ + R I ++ P+ + + L +
Sbjct: 726 TKSVVFSQFRKMLLLLETPLKAAGFTILRLDGAMTVKKRTQVIGEFGNPELTGPVVLLAS 785
Query: 523 TRAGGLGINLTTADIVVLYDSDWNPQADLQAMDRAHRIGQKKQVRVFRFVTDNSVEEKIL 582
+A G GINLT A V L+D WNP + QAMDR HRIGQK++V++ R + NS+EE++L
Sbjct: 786 LKASGTGINLTAASRVYLFDPWWNPAVEEQAMDRIHRIGQKQEVKMIRMIARNSIEERVL 845
Query: 583 ERATQKLKL 591
E +K L
Sbjct: 846 ELQQKKKNL 854
Score = 78.2 bits (191), Expect = 7e-14
Identities = 71/316 (22%), Positives = 135/316 (42%), Gaps = 59/316 (18%)
Query: 162 GILADEMGLGKTLQTIAFLGYLRY-------------------IEKKNGP---------- 192
G+ AD+MGLGKTL ++ + + RY IEKK
Sbjct: 281 GVFADDMGLGKTLTLLSLIAFDRYGNASTSTPTEEPLDGEGDKIEKKGKKRGRGKSSESV 340
Query: 193 -------------------FLVIAPKSTLNNWLREINRWTPEVSAFILQGDKEERSKLCH 233
L++ P S ++ W+ ++ T + ER+ +
Sbjct: 341 TRKKLKTDDVVGMNVSQKTTLIVCPPSVISAWITQLEEHTVPGILKVYMYHGGERTDDVN 400
Query: 234 DKLLACDFDICVASYEIIIREKA----SFKKIDWEYVVIDEAHRIKNEESMLSQVLREFS 289
+ + +DI + +Y + E++ KK++W +++DEAH IKN + S+V+ +
Sbjct: 401 ELM---KYDIVLTTYGTLAVEESWEDSPVKKMEWLRIILDEAHTIKNANAQQSRVVCKLK 457
Query: 290 SRNRLLITGTPLQNNLHELWALLNFLLPDIFADSATXXXXXXXXXXXXXXXXVVKQLHTV 349
+ R +TGTP+QN +L++L+ FL + F+ + + +L +
Sbjct: 458 ASRRWAVTGTPIQNGSFDLYSLMAFLRFEPFSIKSYWQSLIQRPLGQGNKKG-LSRLQVL 516
Query: 350 LSPFLLRRIKNDVEGSLLPKKELNVYVGMSSMQKKWYKQILEKDIDAVNG--SNGQ-KES 406
++ LRR K L PK YV +S +++ Y + + V +NG +
Sbjct: 517 MATISLRRTKEKSLIGLPPKTVETCYVELSPEERQLYDHMEGEAKGVVQNLINNGSLMRN 576
Query: 407 KTRLLNIVMQLRKCCN 422
+ +L+I+++LR+ C+
Sbjct: 577 YSTVLSIILRLRQLCD 592
>CE14110 [KL] KOG4439 RNA polymerase II transcription termination factor
TTF2/lodestar DEAD-box superfamily
Length = 1026
Score = 93.2 bits (230), Expect = 2e-18
Identities = 91/335 (27%), Positives = 147/335 (43%), Gaps = 74/335 (22%)
Query: 140 QLRPYQIQGLNWLVALH-KNQLAGILADEMGLGKTLQTIAFLGYL--------------- 183
+L P+Q GL WLV + GILAD+MGLGKTL ++ + +
Sbjct: 388 ELMPHQKAGLRWLVWREGQPHSGGILADDMGLGKTLSMLSLIVHQKAARRARKESGDNAA 447
Query: 184 ----RYIEKKNGPF-----LVIAPKSTLNNWLREINRWTPE--VSAFILQGDKEERSKLC 232
R + K+ G + L+IAP S ++ W EINR +S F+ G K++R
Sbjct: 448 DKEKRRVAKEEGLYPSNGTLIIAPASLIHQWEAEINRRLESDLLSVFMFHGTKKQRQ--I 505
Query: 233 HDKLLACDFDICVASY-----EIIIREKASFKK--------------------------- 260
K LA +D+ + +Y E++ ++ A KK
Sbjct: 506 EPKELA-RYDVVITTYTLAANELMEKKAAGSKKEEDSDDESENEENPRRPAGKNDSPLAR 564
Query: 261 IDWEYVVIDEAHRIKNEESMLSQVLREFSSRNRLLITGTPLQNNLHELWALLNFLLPDIF 320
+ W V++DEAH IKN S S+ + SS +R ++GTP+ NNL +L++L+ FL +F
Sbjct: 565 VAWSRVILDEAHAIKNRLSQCSKAVCRLSSFSRWCLSGTPIHNNLWDLYSLVRFLRIPLF 624
Query: 321 ADSATXXXXXXXXXXXXXXXXVVKQLHTVLSPFLLRRIKNDVEGSLLPKKELNVYVGMSS 380
D + +++ + +LRR K D + +L KK +N+
Sbjct: 625 GD-----RKFWAESIMPMKTGMADRVNLLTKNLMLRRTK-DQQCALTNKKIVNL------ 672
Query: 381 MQKKWYKQILEKDIDAVNGSNGQKESKTRLLNIVM 415
+KK LE D NG E+ +L+ ++
Sbjct: 673 KEKKIEIHELEMVGDEANGYAIMMEAAQKLVKQIV 707
Score = 82.8 bits (203), Expect = 3e-15
Identities = 43/145 (29%), Positives = 79/145 (53%), Gaps = 8/145 (5%)
Query: 461 EQGSRVLIFSQMSRVLDILEDYCYFREYEYCRIDGSTAHEDRINAIDDYNAPDSKKFIFL 520
E+ +V+I SQ + VL+++E + + Y I G +DR +D +N + L
Sbjct: 854 EKKEKVVIVSQWTSVLNLVEKHIQAGGHNYTSITGQVLVKDRQERVDSFNQEKGGAQVML 913
Query: 521 LTTRAGGLGINLTTADIVVLYDSDWNPQADLQAMDRAHRIGQKKQV--------RVFRFV 572
L+ AGG+G+NL + +++ D WNP + QA DR +R+GQKK+V + R +
Sbjct: 914 LSLTAGGVGLNLIGGNHLIMVDLHWNPALEQQACDRIYRMGQKKEVFIHRLNISKFCRLI 973
Query: 573 TDNSVEEKILERATQKLKLDQLVIQ 597
++E+++++ +KL L V++
Sbjct: 974 VKGTIEQRVMDLQEKKLALAASVLE 998
>At2g21450 [L] KOG0390 DNA repair protein SNF2 family
Length = 816
Score = 93.2 bits (230), Expect = 2e-18
Identities = 114/545 (20%), Positives = 209/545 (37%), Gaps = 127/545 (23%)
Query: 140 QLRPYQIQGLNWLVALHKNQLAG------ILADEMGLGKTLQTIAFLGYLRYIEKKNGPF 193
++RP+Q +G +L N LA ILA G GKT I+FL ++ + P
Sbjct: 264 EMRPHQTEGFRFLC----NNLAADEPGGCILAHAPGSGKTFLLISFLQSFMAMDPQARP- 318
Query: 194 LVIAPKSTLNNWLREINRWTPEVSAFILQGDKEERSKLCHDKLLA--------------- 238
LV+ PK + +W RE W E + + S+ K+L
Sbjct: 319 LVVLPKGIIESWKREFTLWEVEKIPLLDFYSVKAESRKQQLKVLGQWIKERSILFLGYQQ 378
Query: 239 -----CD--FDICVASYEIIIREKASFKKIDWEYVVIDEAHRIKNEESMLSQVLREFSSR 291
CD F+ ++I+ EK + +++DE H +N+E+ + L +R
Sbjct: 379 FTRIICDDNFEAASEDCKLILLEKPTL-------LILDEGHTSRNKETYMLSSLARVKTR 431
Query: 292 NRLLITGTPLQNNLHELWALLNFLLPDIFADSAT-------------------------- 325
++++TGT QNN+ E++ +L+ + P T
Sbjct: 432 RKVVLTGTLFQNNVEEVFNILDLVRPKFLKRPGTREIVSRIMSKAEIPRGKQVNQSSSSI 491
Query: 326 -------XXXXXXXXXXXXXXXXVVKQLHTVLSPFLLRRIKNDVEGSLLPKKELNVYVGM 378
++K L ++ +L K D G L E V + +
Sbjct: 492 EGTFFAAVELTLQRSTNFSAKASLIKDLRE-MTRNILHYHKADFSGLLPGLSEFTVMLNL 550
Query: 379 SSMQKKWYKQILEKDI----------------------DAVNGSNGQKESKTRLLNIVMQ 416
SS+Q+ K + + ++ + NG G ++ T ++ +
Sbjct: 551 SSIQRDEVKGLRKMELFKQISLGAALYIHPKLKSFLEENPSNGEKGFSDNNTTVMKLDKM 610
Query: 417 LRKCCNHPYLFDGAEPGPPYTTDEHLVYNSAXXXXXXXXXXXXXEQGSRVLIFSQ----- 471
L+K V + G ++L+FSQ
Sbjct: 611 LKKI---------------------NVRDGVKMKFFLNLLALCESTGEKLLVFSQYIVPI 649
Query: 472 --MSRVLDILEDYCYFREYEYCRIDGSTAHEDRINAIDDYNAPDSKKFIFLLTTRAGGLG 529
+ R++ ++ + + E I G +++E R +++ +N K +F + +A G G
Sbjct: 650 KTLERLMSSMKGWRLGK--EMFTITGDSSNEQREWSMERFNNSLEAK-VFFGSIKACGEG 706
Query: 530 INLTTADIVVLYDSDWNPQADLQAMDRAHRIGQKKQVRVFRFVTDNSVEEKILERATQKL 589
I+L A V++ D NP QA+ RA+R GQK++V ++ V +S EE+ E T+K
Sbjct: 707 ISLVGASRVLILDVHLNPSVTQQAVARAYRPGQKRKVYAYKLVAADSPEEENYETCTRKE 766
Query: 590 KLDQL 594
+ ++
Sbjct: 767 MMSKM 771
>7298963 [KL] KOG4439 RNA polymerase II transcription termination factor
TTF2/lodestar DEAD-box superfamily
Length = 1061
Score = 92.0 bits (227), Expect = 4e-18
Identities = 50/155 (32%), Positives = 91/155 (58%), Gaps = 3/155 (1%)
Query: 465 RVLIFSQMSRVLDILEDYCYFREYEYCRIDGSTAHEDRINAIDDYNAPDSKKFIFLLTTR 524
+ ++ SQ + VLDIL D+ ++G+ ++R + ++++N +++K + LL+
Sbjct: 910 KAIVVSQWTSVLDILRDHLSKDGVATLSLNGTIPVKNRQDIVNEFNDRNNQKRVLLLSLT 969
Query: 525 AGGLGINLTTADIVVLYDSDWNPQADLQAMDRAHRIGQKKQVRVFRFVTDNSVEEKILER 584
AGG+G+NL A+ ++L D WNPQ + QA DR +R+GQKK V +++F+ ++VE++I
Sbjct: 970 AGGVGLNLIGANHLLLLDLHWNPQLEAQAQDRIYRVGQKKNVIIYKFMCVDTVEQRIKGL 1029
Query: 585 ATQKLKLDQLVIQQGRVTXXXXXXXXDSKEGLLSM 619
+KL L V+ +V+ D +GL M
Sbjct: 1030 QDKKLDLADGVLTGAKVS---SKLTIDDLKGLFGM 1061
Score = 86.3 bits (212), Expect = 2e-16
Identities = 95/392 (24%), Positives = 155/392 (39%), Gaps = 100/392 (25%)
Query: 132 ESPAYVNGQLRPYQIQGLNWLV-ALHKNQLAGILADEMGLGKTLQTIAFLGYLRYIEKKN 190
E P + L +Q L W+ K GILAD+MGLGKTL I+ + + KN
Sbjct: 430 EDPVGLKVSLMNHQKHALAWMSWRERKLPRGGILADDMGLGKTLTMISSV-----LACKN 484
Query: 191 GPFLVIAPKSTL--------NNWLREINRWTPE--------------VSAFILQGDKEER 228
G + + N + + W + ++ + Q + E
Sbjct: 485 GQEMSEGKDESSDSDSEDDKNKKRKSVTGWKSKGRKDTRRGGTLVVCPASLLRQWESEVE 544
Query: 229 SKLCHDKLLAC---------------DFDICVASYEIIIREKASFKKI---DWEYVVIDE 270
SK+ KL C D+DI V +Y+I+ RE S + W +++DE
Sbjct: 545 SKVSRQKLTVCVHHGNNRETKGKYLRDYDIVVTTYQIVAREHKSLSAVFGVKWRRIILDE 604
Query: 271 AHRIKNEESMLSQVLREFSSRNRLLITGTPLQNNLHELWALLNFLLPDIFADSATXXXXX 330
AH ++N +S S + + + R +TGTP+QN +++ALL FL F D T
Sbjct: 605 AHVVRNHKSQSSLAVCDLRGKYRWALTGTPIQNKELDVYALLKFLRCSPFDDLHTWKKWI 664
Query: 331 XXXXXXXXXXXVVKQLHTVLSPFLLRRIKNDV--EGSL--------------LPKKELNV 374
+L+ ++ +LRR K + +G L L K+E+NV
Sbjct: 665 DNKSAGGQ-----NRLNLLMKSLMLRRTKAQLQSDGKLNSLPNKELRLIEISLDKEEMNV 719
Query: 375 YVGMSSMQKKWYKQIL----EKDID-------------AVNGSNG--------------- 402
Y + + + + Q L E++ D + NG
Sbjct: 720 YQTVMTYSRTLFAQFLHQRAERETDFNYRSDANKPTYNQIKDPNGAYYKMHEKFARMAGS 779
Query: 403 QKESKTR-LLNIVMQLRKCCNHPYLFDGAEPG 433
+KE K+ +L ++++LR+ C HP L D G
Sbjct: 780 KKEVKSHDILVLLLRLRQICCHPGLIDAMLDG 811
>At1g48310 [B] KOG1000 Chromatin remodeling protein HARP/SMARCAL1 DEAD-box
superfamily
Length = 675
Score = 91.7 bits (226), Expect = 6e-18
Identities = 82/367 (22%), Positives = 156/367 (42%), Gaps = 42/367 (11%)
Query: 245 VASYEIIIREKASFKKIDWEYVVIDEAHRIKNEESMLSQVLREFSSRNR--LLITGTPLQ 302
+ SY+++ + +D++ V+ DE+H +KN ++ + + + +L++GTP
Sbjct: 301 IVSYDVVTKLDKLLMALDFKVVIADESHFLKNGQAKRTSACLPVIKKAQYAILLSGTPAL 360
Query: 303 NNLHELWALLNFLLPDIFADSATXXXXXXXXXXXXXXXXVVK-----------------Q 345
+ EL+ L L PD++ + + + +
Sbjct: 361 SRPIELFKQLEALYPDVYRNIHEYGGRYCKGVSPLHIEKLPRSSYKGFFGTYQGASNHDE 420
Query: 346 LHTVL-SPFLLRRIKNDVEGSLLPKKELNVYVGMSSMQKKWYKQILEKDIDAVNGSNGQK 404
LH ++ + ++RR+K DV L K+ V++ +++ K + ++ V
Sbjct: 421 LHNLMKATVMIRRLKKDVLTELPSKRRQQVFLDLAAKDMKQINALFH-ELKVVKSKIKDC 479
Query: 405 ESKTRLLNIVMQLRKCCNHPYLFDGAEPGPPYTTD--EHLVYNSAXXXXXXXXXXXXXEQ 462
S+ + ++ + N Y D A P D E+++ E
Sbjct: 480 ISEDDIKSLKFIEKNLINKIYT-DSAVAKIPAVLDYLENVI-----------------EA 521
Query: 463 GSRVLIFSQMSRVLDILEDYCYFREYEYCRIDGSTAHEDRINAIDDYNAPDSKKFIFLLT 522
G + L+F+ +L+ L + ++ RIDGST R + D+ D K +L+
Sbjct: 522 GCKFLVFAHHQSMLEELHQFLKKKKVGCIRIDGSTPASSRQALVSDFQDKDEIKAA-VLS 580
Query: 523 TRAGGLGINLTTADIVVLYDSDWNPQADLQAMDRAHRIGQKKQVRVFRFVTDNSVEEKIL 582
RA G+GI LT A V+ + W P +QA DRAHRIGQ V + + +++V++ I
Sbjct: 581 IRAAGVGITLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNIHYLLANDTVDDIIW 640
Query: 583 ERATQKL 589
+ KL
Sbjct: 641 DVVQSKL 647
>CE11083 [KL] KOG4439 RNA polymerase II transcription termination factor
TTF2/lodestar DEAD-box superfamily
Length = 1091
Score = 91.3 bits (225), Expect = 8e-18
Identities = 46/136 (33%), Positives = 78/136 (56%)
Query: 461 EQGSRVLIFSQMSRVLDILEDYCYFREYEYCRIDGSTAHEDRINAIDDYNAPDSKKFIFL 520
E+ +V+I SQ + VL+++E + ++Y I G +DR +D +N + L
Sbjct: 931 EKKEKVVIVSQWTSVLNLIEIHIKSSGFKYTSITGQVLVKDRQERVDSFNREKGGARVML 990
Query: 521 LTTRAGGLGINLTTADIVVLYDSDWNPQADLQAMDRAHRIGQKKQVRVFRFVTDNSVEEK 580
L+ AGG+G+NLT + +V+ D WNP + QA DR +R+GQKK V + R VT ++E++
Sbjct: 991 LSLAAGGVGLNLTGGNHLVMVDLHWNPALEQQAFDRIYRMGQKKDVFIHRLVTKGTIEQR 1050
Query: 581 ILERATQKLKLDQLVI 596
++ K+ L V+
Sbjct: 1051 VVMLQKDKVALASSVL 1066
Score = 86.3 bits (212), Expect = 2e-16
Identities = 68/254 (26%), Positives = 115/254 (44%), Gaps = 63/254 (24%)
Query: 129 QFRESPAYVNGQLRPYQIQGLNWLVALHKN-QLAGILADEMGLGKTLQTIAFLGYL---- 183
+ ++P +L P+Q GL W+ Q GILAD+MGLGKTL I+ + +
Sbjct: 459 ELTDTPKGFKLELMPHQKAGLTWMRWRETQPQPGGILADDMGLGKTLSMISLIAHQKAAR 518
Query: 184 ---------------RYIEKKNGPF-----LVIAPKSTLNNWLREINRWTPE--VSAFIL 221
R + K+ G L++AP S ++ W EI+R + +S ++
Sbjct: 519 RARREDGNDDKDKEKRKVVKEQGLIPSNGTLIVAPASLIHQWDAEIDRRLDDSVLSTYMF 578
Query: 222 QGDKEERSKLCHDKLLACDFDICVASYEII-------IREKAS----------------- 257
G K++R D +D+ + ++ +I IR K+
Sbjct: 579 HGTKKQRDI---DARRLARYDVVITTFNLIANELIEKIRTKSKADDSSDGESDSNHTGIR 635
Query: 258 ---------FKKIDWEYVVIDEAHRIKNEESMLSQVLREFSSRNRLLITGTPLQNNLHEL 308
+I W V++DEAH IKN +S+ S+ + S+ +R ++GTP+ NNL +L
Sbjct: 636 RAVGKDDSVLAQICWSRVILDEAHTIKNRQSLASKAVCRLSAFSRWCLSGTPIHNNLWDL 695
Query: 309 WALLNFLLPDIFAD 322
++L+ FL F+D
Sbjct: 696 YSLVRFLRIRPFSD 709
>YLR032w [KL] KOG1001 Helicase-like transcription factor HLTF/DNA helicase
RAD5 DEAD-box superfamily
Length = 1169
Score = 90.9 bits (224), Expect = 1e-17
Identities = 51/131 (38%), Positives = 81/131 (60%), Gaps = 5/131 (3%)
Query: 463 GSRVLIFSQMSRVLDILED---YCYFREY-EYCRIDGSTAHEDRINAIDDYNAPD-SKKF 517
G +V+IFSQ S LDILE + + ++ + + DG + ++R + + D+ D S++
Sbjct: 1012 GEQVVIFSQFSTYLDILEKELTHTFSKDVAKIYKFDGRLSLKERTSVLADFAVKDYSRQK 1071
Query: 518 IFLLTTRAGGLGINLTTADIVVLYDSDWNPQADLQAMDRAHRIGQKKQVRVFRFVTDNSV 577
I LL+ +AGG+G+NLT A + D W+P + QA+DR HRIGQ V+V RF+ +S+
Sbjct: 1072 ILLLSLKAGGVGLNLTCASHAYMMDPWWSPSMEDQAIDRLHRIGQTNSVKVMRFIIQDSI 1131
Query: 578 EEKILERATQK 588
EEK+L +K
Sbjct: 1132 EEKMLRIQEKK 1142
Score = 67.0 bits (162), Expect = 2e-10
Identities = 79/341 (23%), Positives = 138/341 (40%), Gaps = 62/341 (18%)
Query: 162 GILADEMGLGKTLQTIAFLGYLRY----IEKK--------------------NGPF---- 193
GIL+DEMGLGKT+ + + + ++KK P+
Sbjct: 528 GILSDEMGLGKTVAAYSLVLSCPHDSDVVDKKLFDIENTAVSDNLPSTWQDNKKPYASKT 587
Query: 194 -LVIAPKSTLNNWLREINRW--TPEVSAFILQGDKEERSKLCHDKLLACDFDICVASYEI 250
L++ P S L W E + +P++ + G K K + + +Y I
Sbjct: 588 TLIVVPMSLLTQWSNEFTKANNSPDMYHEVYYGGNVSSLKTLLTKTKTPP-TVVLTTYGI 646
Query: 251 IIREKASFKK----------------IDWEYVVIDEAHRIKNEESMLSQVLREFSSRNRL 294
+ E K +++ ++IDE H I+N ++ S+ + + +
Sbjct: 647 VQNEWTKHSKGRMTDEDVNISSGLFSVNFYRIIIDEGHNIRNRTTVTSKAVMALQGKCKW 706
Query: 295 LITGTPLQNNLHELWALLNFLLPDIFADSATXXXXXXXXXXXXXXXXVVKQLHTVLSPFL 354
++TGTP+ N L +L++L+ FL D + ++ +L P L
Sbjct: 707 VLTGTPIINRLDDLYSLVKFLELDPWRQINYWKTFVSTPFESKNYKQAFDVVNAILEPVL 766
Query: 355 LRRIK--NDVEG----SLLPKKELNVYVGMSSMQKKWYKQILEK-DIDAVNG-SNGQKES 406
LRR K D +G L PK+ + + S Q YK +L+K ++ +G + G
Sbjct: 767 LRRTKQMKDKDGKPLVELPPKEVVIKRLPFSKSQDLLYKFLLDKAEVSVKSGIARGDLLK 826
Query: 407 K-TRLLNIVMQLRKCCNHPYLFDGAEPGPPYTTDEHLVYNS 446
K + +L +++LR+ C HP L G DE L N+
Sbjct: 827 KYSTILVHILRLRQVCCHPGLI-----GSQDENDEDLSKNN 862
>At1g05480 [L] KOG0390 DNA repair protein SNF2 family
Length = 588
Score = 90.9 bits (224), Expect = 1e-17
Identities = 112/503 (22%), Positives = 194/503 (38%), Gaps = 80/503 (15%)
Query: 163 ILADEMGLGKTLQTIAFL-GYLRYIEKKNGPFLVIAPKSTLNNWLREINRWTPEVS---- 217
I++ G GKT TI FL YL+ ++IAP S L W E +W +
Sbjct: 38 IMSHAPGTGKTRLTIIFLQAYLQCFPDCKP--VIIAPASLLLTWAEEFKKWNISIPFHNL 95
Query: 218 --------------AFILQGDKEERSK-----------LCHDKLLACDFDICVASYEI-- 250
++Q + RS + +L +++ +
Sbjct: 96 SSLDFTGKENSAALGLLMQKNATARSNNEIRMVKIYSWIKSKSILGISYNLYEKLAGVKD 155
Query: 251 ------IIREKASFKKIDW---------EYVVIDEAHRIKNEESMLSQVLREFSSRNRLL 295
++RE K++D +V+DEAH +N+ S + + L + ++ R+L
Sbjct: 156 EDKKTKMVREVKPDKELDDIREILMGRPGLLVLDEAHTPRNQRSCIWKTLSKVETQKRIL 215
Query: 296 ITGTPLQNNLHELWALLNFLLPDIFADSATXXXXXXXXXXXXXXXXV--------VKQLH 347
++GTP QNN EL +L P + + +++L
Sbjct: 216 LSGTPFQNNFLELCNVLGLARPKYLERLTSTLKKSGMTVTKRGKKNLGNEINNRGIEELK 275
Query: 348 TVLSPFLLRRIKNDVEGSLLPKKELNVYVGMSSMQKKWYKQILEKDIDAVNGSNGQKESK 407
V+ PF+ + ++ SL +E V + +Q++ + I E + + + E K
Sbjct: 276 AVMLPFVHVHKGSILQSSLPGLRECVVVLNPPELQRRVLESI-EVTHNRKTKNVFETEHK 334
Query: 408 TRLLNIVMQLRKCCNHPYLFDGAEPGPPYTTDEHLVYN----------SAXXXXXXXXXX 457
L+++ L C + DE L+ S
Sbjct: 335 LSLVSVHPSLVSRCK-------ISEKERLSIDEALLAQLKKVRLDPNQSVKTRFLMEFVE 387
Query: 458 XXXEQGSRVLIFSQMSRVLDILEDYCYFR-----EYEYCRIDGSTAHEDRINAIDDYNAP 512
+VL+FSQ L ++ + R E + G + R I+++N P
Sbjct: 388 LCEVIKEKVLVFSQYIDPLKLIMKHLVSRFKWNPGEEVLYMHGKLEQKQRQTLINEFNDP 447
Query: 513 DSKKFIFLLTTRAGGLGINLTTADIVVLYDSDWNPQADLQAMDRAHRIGQKKQVRVFRFV 572
SK +FL +T+A GI+L A V+L D WNP + QA+ RA+RIGQK+ V + V
Sbjct: 448 KSKAKVFLASTKACSEGISLVGASRVILLDVVWNPAVERQAISRAYRIGQKRIVYTYHLV 507
Query: 573 TDNSVEEKILERATQKLKLDQLV 595
+ E + QK ++ +LV
Sbjct: 508 AKGTPEGPKYCKQAQKDRISELV 530
>7291744 [R] KOG1016 Predicted DNA helicase DEAD-box superfamily
Length = 1534
Score = 90.9 bits (224), Expect = 1e-17
Identities = 85/309 (27%), Positives = 133/309 (42%), Gaps = 65/309 (21%)
Query: 141 LRPYQIQGLNWLV------ALHKNQLAG---ILADEMGLGKTLQTIAFLG-YLRYIEKKN 190
++P+QI G+ +L N+ +G ILA MGLGKTLQ ++F +LR+ K
Sbjct: 384 IKPHQIGGVRFLYDNIIESTRRYNKSSGFGCILAHSMGLGKTLQVVSFCDIFLRHTSAKT 443
Query: 191 GPFLVIAPKSTLNNWLREINRWTPEVSA-----------FILQGDKEE---RSKLC---- 232
L + P +TL NWL E N W P S F+L ++ R+K+
Sbjct: 444 --VLCVMPINTLQNWLSEFNMWIPRYSTDSNVRPRNFDIFVLNDQQKTLTARAKVILNWV 501
Query: 233 HD-----------KLLACDF-------------DICVASYEIIIREKASFKKIDWEYVVI 268
HD +LLA D +S +++ + K + V+
Sbjct: 502 HDGGVLLIGYELFRLLALKLVKTRKRKGSVIRPDGMDSSSDLMNLVYEALVKPGPDLVIC 561
Query: 269 DEAHRIKNEESMLSQVLREFSSRNRLLITGTPLQNNLHELWALLNFLLPDIFADSA---- 324
DE HRIKN + +S L+E +R R+++TG PLQNNL E W +++F+ P+
Sbjct: 562 DEGHRIKNSHAGISLALKEIRTRRRIVLTGYPLQNNLLEYWCMVDFVRPNYLGTRTEFCN 621
Query: 325 -------TXXXXXXXXXXXXXXXXVVKQLHTVLSPFLLRRIKNDVEGSLLPKKELNVYVG 377
LH++L F+ RR ++ +L K E + V
Sbjct: 622 MFERPIQNGQCVDSTPDDIKLMRYRAHVLHSLLLGFVQRRSHTVLQLTLPQKYEYVILVK 681
Query: 378 MSSMQKKWY 386
M++ Q+K Y
Sbjct: 682 MTAFQRKLY 690
>At3g16600 [KL] KOG1001 Helicase-like transcription factor HLTF/DNA helicase
RAD5 DEAD-box superfamily
Length = 638
Score = 89.7 bits (221), Expect = 2e-17
Identities = 84/337 (24%), Positives = 136/337 (39%), Gaps = 64/337 (18%)
Query: 134 PAYVNGQLRPYQIQGLNWLVALHKNQ---LAGILADEMGLGKTLQTIAF--LGYLRYIEK 188
P + L +Q LNW+ K L GILAD+ GLGKT+ TI+ L L+ K
Sbjct: 46 PGVLTVPLMRHQKIALNWMRKKEKRSRHCLGGILADDQGLGKTISTISLILLQKLKSQSK 105
Query: 189 K-------NGPFLVIAPKSTLNNWLREIN-RWTPEVSAFILQGDKEERSKLCHDKLLACD 240
+ +G L++ P S + W RE+ + + E +L R+K D
Sbjct: 106 QRKRKGQNSGGTLIVCPASVVKQWAREVKEKVSDEHKLSVLVHHGSHRTK---DPTEIAI 162
Query: 241 FDICVASYEIIIREK----------------------------ASFKKIDWEYVVIDEAH 272
+D+ + +Y I+ E + ++ W VV+DEAH
Sbjct: 163 YDVVMTTYAIVTNEVPQNPMLNRYDSMRGRESLDGSSLIQPHVGALGRVRWLRVVLDEAH 222
Query: 273 RIKNEESMLSQVLREFSSRNRLLITGTPLQNNLHELWALLNFLLPDIFADSATXXXXXXX 332
IKN +++++ ++ R +TGTP++N + +L++ FL +A
Sbjct: 223 TIKNHRTLIAKACFSLRAKRRWCLTGTPIKNKVDDLYSYFRFLRYHPYA-MCNSFHQRIK 281
Query: 333 XXXXXXXXXVVKQLHTVLSPFLLRRIKNDVEGSLLPKKELNVYVGMSSMQKKWYKQILEK 392
K+L +L +LRR K E S K ELN +W
Sbjct: 282 APIDKKPLHGYKKLQAILRGIMLRRTK---EWSFYRKLELN---------SRW------- 322
Query: 393 DIDAVNGSNGQKESKTRLLNIVMQLRKCCNHPYLFDG 429
+ E LL ++++LR+ CNHP L +G
Sbjct: 323 KFEEYAADGTLHEHMAYLLVMLLRLRQACNHPQLVNG 359
Score = 69.7 bits (169), Expect = 2e-11
Identities = 41/101 (40%), Positives = 56/101 (54%), Gaps = 2/101 (1%)
Query: 484 YFREYEYCRIDGSTAHEDRIN--AIDDYNAPDSKKFIFLLTTRAGGLGINLTTADIVVLY 541
YF E C D S A R + + + N+ L++ +AG LG+N+ A V+L
Sbjct: 473 YFIENPSCDRDSSVACRARQSRHSTNKDNSISGLVCAMLMSLKAGNLGLNMVAASHVILL 532
Query: 542 DSDWNPQADLQAMDRAHRIGQKKQVRVFRFVTDNSVEEKIL 582
D WNP + QA+DRAHRIGQ + V V R N+VEE+IL
Sbjct: 533 DLWWNPTTEDQAIDRAHRIGQTRAVTVTRIAIKNTVEERIL 573
>Hs21071052 [KL] KOG1001 Helicase-like transcription factor HLTF/DNA helicase
RAD5 DEAD-box superfamily
Length = 1009
Score = 89.4 bits (220), Expect = 3e-17
Identities = 47/126 (37%), Positives = 75/126 (59%), Gaps = 1/126 (0%)
Query: 467 LIFSQMSRVLDILEDYCYFREYEYCRIDGSTAHEDRINAIDDY-NAPDSKKFIFLLTTRA 525
L+ SQ + L ++E + + R+DGS A + R+ +I + N I LL+ +A
Sbjct: 855 LVVSQFTTFLSLIEIPLKASGFVFTRLDGSMAQKKRVESIQCFQNTEAGSPTIMLLSLKA 914
Query: 526 GGLGINLTTADIVVLYDSDWNPQADLQAMDRAHRIGQKKQVRVFRFVTDNSVEEKILERA 585
GG+G+NL+ A V L D WNP A+ Q DR HR+GQK++V + +F+ +SVEE +L+
Sbjct: 915 GGVGLNLSAASRVFLMDPAWNPAAEDQCFDRCHRLGQKQEVIITKFIVKDSVEENMLKIQ 974
Query: 586 TQKLKL 591
+K +L
Sbjct: 975 NKKREL 980
Score = 77.0 bits (188), Expect = 1e-13
Identities = 60/261 (22%), Positives = 121/261 (45%), Gaps = 22/261 (8%)
Query: 186 IEKKNGPFLVIAPKSTLNNWLREINRWTPE---VSAFILQGDKEERSKLCHDKLLACDFD 242
+E++ L+I P S L+NW+ + + ++ ++ G R + L D
Sbjct: 471 VEERPRTTLIICPLSVLSNWIDQFGQHIKSDVHLNFYVYYGPDRIR-----EPALLSKQD 525
Query: 243 ICVASYEIIIREKAS-----FKKIDWEYVVIDEAHRIKNEESMLSQVLREFSSRNRLLIT 297
I + +Y I+ + + I W V++DE H I+N + ++ + + S R ++T
Sbjct: 526 IVLTTYNILTHDYGTKGDSPLHSIRWLRVILDEGHAIRNPNAQQTKAVLDLESERRWVLT 585
Query: 298 GTPLQNNLHELWALLNFLLPDIFADSATXXXXXXXXXXXXXXXXVVKQLHTVLSPFLLRR 357
GTP+QN+L +LW+LL+FL F D +++L +++ LRR
Sbjct: 586 GTPIQNSLKDLWSLLSFLKLKPFIDREWWHRTIQRPVTMGDEGG-LRRLQSLIKNITLRR 644
Query: 358 IK-NDVEGS---LLPKKELNV-YVGMSSMQKKWYKQILEK---DIDAVNGSNGQKESKTR 409
K + ++G LP++++ + ++ +S ++K Y+ + + I
Sbjct: 645 TKTSKIKGKPVLELPERKVFIQHITLSDEERKIYQSVKNEGRATIGRYFNEGTVLAHYAD 704
Query: 410 LLNIVMQLRKCCNHPYLFDGA 430
+L ++++LR+ C H YL A
Sbjct: 705 VLGLLLRLRQICCHTYLLTNA 725
>At2g16390 [L] KOG0390 DNA repair protein SNF2 family
Length = 888
Score = 89.4 bits (220), Expect = 3e-17
Identities = 119/519 (22%), Positives = 213/519 (40%), Gaps = 75/519 (14%)
Query: 125 DVDFQFRESPAYVNG---------QLRPYQIQGLNWLVA-LHKNQLAG-ILADEMGLGKT 173
D + +F E + G +++P+QI+G +L + L + G I+A G GKT
Sbjct: 325 DNELKFSEEGLMIGGLAAHPTHAAEMKPHQIEGFQFLCSNLVADDPGGCIMAHAPGSGKT 384
Query: 174 LQTIAFLGYL--RYIEKKNGPFLVIAPKSTLNNWLREINRWTPE---------------- 215
I+F+ +Y + K LV+ PK L W +E RW E
Sbjct: 385 FMIISFMQSFLAKYPQAKP---LVVLPKGILPTWKKEFVRWQVEDIPLLDFYSAKAENRA 441
Query: 216 VSAFILQGDKEERSKLC----HDKLLACDFDICVASYEIIIREKASFKKIDWEYVVIDEA 271
IL+ E++S L + CD S + I+ + S +++DE
Sbjct: 442 QQLSILKQWMEKKSILFLGYQQFSTIVCDDTTDSLSCQEILLKVPSI-------LILDEG 494
Query: 272 HRIKNEESMLSQVLREFSSRNRLLITGTPLQNNLHELWALLNFLLPDIFA-DSATXXXXX 330
H +NE++ L Q L + + +++++GT QN++ E++ +LN + P D++
Sbjct: 495 HTPRNEDTNLLQSLAQVQTPRKVVLSGTLYQNHVKEVFNILNLVRPKFLKLDTSKSAVKR 554
Query: 331 XXXXXXXXXXXVVKQLHTVLSPFLLRRIKNDVEGSLLPKKELNVYVGMSSMQKK---WYK 387
+ ++ ++ +++ ++ S ++ V + M KK +YK
Sbjct: 555 ILAYTPCDVRGRLTGSNSDMASMFNETVEHTLQKSEDFTVKIKVIQDLREMTKKVLHYYK 614
Query: 388 QILEKDIDAVNGSNGQKESKTRLLNIVMQLRK-------------CCNHPYL---FDGAE 431
++ + + LN V +LR+ HP L D ++
Sbjct: 615 GDFLDELPGLADFTVVLNLSPKQLNEVKKLRREKRKFKVSAVGSAIYLHPKLKVFSDKSD 674
Query: 432 PGPPYTTDEHL----VYNSAXXXXXXXXXXXXXEQGSRVLIFSQMSRVLDILEDYCYFRE 487
T DE + + G ++L+FSQ L LE +
Sbjct: 675 DVSDTTMDEMVEKLDLNEGVKAKFFLNLINLCDSAGEKLLVFSQYLIPLKFLERLAALAK 734
Query: 488 -----YEYCRIDGSTAHEDRINAIDDYNA-PDSKKFIFLLTTRAGGLGINLTTADIVVLY 541
E + G+T+ E R +++ +N+ PD+K IF + +A G GI+L A +++
Sbjct: 735 GWKLGKEVFVLTGNTSSEQREWSMETFNSSPDAK--IFFGSIKACGEGISLVGASRILIL 792
Query: 542 DSDWNPQADLQAMDRAHRIGQKKQVRVFRFVTDNSVEEK 580
D NP QA+ RA R GQKK V +R + +S EE+
Sbjct: 793 DVPLNPSVTRQAIGRAFRPGQKKMVHAYRLIAGSSPEEE 831
>At1g11100 [KL] KOG1001 Helicase-like transcription factor HLTF/DNA helicase
RAD5 DEAD-box superfamily
Length = 1227
Score = 89.4 bits (220), Expect = 3e-17
Identities = 47/130 (36%), Positives = 77/130 (59%), Gaps = 3/130 (2%)
Query: 463 GSRVLIFSQMSRVLDILEDYCYFREYEYCRIDGSTAHEDRINAIDDYNA-PDSKKFIFLL 521
G + ++F+Q +++LD+LE +Y R DG R A+ D+N PD + ++
Sbjct: 1072 GEKAIVFTQWTKMLDLLEAGLKSSGIQYRRFDGKMTVPARDAAVQDFNTLPDVS--VMIM 1129
Query: 522 TTRAGGLGINLTTADIVVLYDSDWNPQADLQAMDRAHRIGQKKQVRVFRFVTDNSVEEKI 581
+ +A LG+N+ A V++ D WNP + QA+DRAHRIGQ + V+V RF ++VE++I
Sbjct: 1130 SLKAASLGLNMVAACHVIMLDLWWNPTTEDQAIDRAHRIGQTRPVKVVRFTVKDTVEDRI 1189
Query: 582 LERATQKLKL 591
L +K K+
Sbjct: 1190 LALQQKKRKM 1199
Score = 73.9 bits (180), Expect = 1e-12
Identities = 76/323 (23%), Positives = 133/323 (40%), Gaps = 62/323 (19%)
Query: 162 GILADEMGLGKTLQTIAFLGYLR---YI----EKKNGPF--------------------- 193
GILAD+ GLGKT+ TIA + R Y+ + KNG
Sbjct: 566 GILADDQGLGKTVSTIALILTERSTPYLPCEEDSKNGGCNQSDHSQVVFNENKVVEDSLC 625
Query: 194 ----------LVIAPKSTLNNWLREINRW-TPEVSAFILQGDKEERSKLCHDKLLACDFD 242
L++ P S + W E+ + T E +L R+K H+ +D
Sbjct: 626 KMRGRPAAGTLIVCPTSLMRQWADELRKKVTLEAHLSVLVYHGCSRTKDPHE---LAKYD 682
Query: 243 ICVASYEIIIREK-----------ASFKKIDWEYVVIDEAHRIKNEESMLSQVLREFSSR 291
+ + +Y ++ + K ++ W VV+DEA IKN ++ S ++
Sbjct: 683 VVITTYSLVSKRKHMDCEPVEFLSGPLAQVSWFRVVLDEAQSIKNYKTQASIACSGLHAK 742
Query: 292 NRLLITGTPLQNNLHELWALLNFLLPDIFADSATXXXXXXXXXXXXXXXXVVKQLHTVLS 351
R ++GTP+QN++ +L++ FL D ++ T K L +L
Sbjct: 743 RRWCLSGTPIQNSIADLYSYFRFLKYDPYSSYQTFCETIKNPISSYPGEG-YKTLQAILK 801
Query: 352 PFLLRRIKND-VEG----SLLPKKELNVYVGMSSMQKKWYKQILEKDIDAVN---GSNGQ 403
+LRR K+ ++G SL PK V + ++ +Y ++ D +
Sbjct: 802 KVMLRRTKDTLLDGKPVISLPPKSIELRRVDFTKEERDFYSKLECDSRDQFKEYAEAGTV 861
Query: 404 KESKTRLLNIVMQLRKCCNHPYL 426
K++ +L ++++LR+ C HP L
Sbjct: 862 KQNYVNILLMLLRLRQACGHPLL 884
>At1g50410 [KL] KOG1001 Helicase-like transcription factor HLTF/DNA helicase
RAD5 DEAD-box superfamily
Length = 1056
Score = 87.8 bits (216), Expect = 8e-17
Identities = 49/128 (38%), Positives = 78/128 (60%), Gaps = 3/128 (2%)
Query: 465 RVLIFSQMSRVLDILEDYCYFREYEYCRIDGSTAHEDRINAIDDY-NAPDSKKFIFLLTT 523
+ +IFSQ + +LD++E E+ R+DG+ + R A+ ++ N PD K + +++
Sbjct: 903 KTIIFSQWTGMLDLVELSLIENSIEFRRLDGTMSLIARDRAVKEFSNDPDVK--VMIMSL 960
Query: 524 RAGGLGINLTTADIVVLYDSDWNPQADLQAMDRAHRIGQKKQVRVFRFVTDNSVEEKILE 583
+AG LG+N+ A V+L D WNP + QA+DRAHRIGQ + V V R N+VE++IL
Sbjct: 961 KAGNLGLNMIAACHVILLDLWWNPTTEDQAIDRAHRIGQTRPVTVTRITIKNTVEDRILA 1020
Query: 584 RATQKLKL 591
+K K+
Sbjct: 1021 LQEEKRKM 1028
Score = 63.5 bits (153), Expect = 2e-09
Identities = 46/181 (25%), Positives = 86/181 (47%), Gaps = 9/181 (4%)
Query: 254 EKASFKKIDWEYVVIDEAHRIKNEESMLSQVLREFSSRNRLLITGTPLQNNLHELWALLN 313
+ + K+ W VV+DEA IKN + +++ ++ R ++GTP+QN + +L++
Sbjct: 537 DSGTLAKVGWFRVVLDEAQTIKNHRTQVARACCGLRAKRRWCLSGTPIQNTIDDLYSYFR 596
Query: 314 FLLPDIFADSATXXXXXXXXXXXXXXXXVVKQLHTVLSPFLLRRIKND-VEGS---LLPK 369
FL D +A + K+L VL +LRR K ++G LP
Sbjct: 597 FLKYDPYAVYKSFCHQIKGPISRNSLQG-YKKLQAVLRAIMLRRTKGTLLDGQPIINLPP 655
Query: 370 KELNVYVGMSSMQKKWYKQILEKD----IDAVNGSNGQKESKTRLLNIVMQLRKCCNHPY 425
K +N+ S++++ + LE D A + ++ +L ++++LR+ C+HP
Sbjct: 656 KTINLSQVDFSVEERSFYVKLESDSRSQFKAYAAAGTLNQNYANILLMLLRLRQACDHPQ 715
Query: 426 L 426
L
Sbjct: 716 L 716
>At1g61140 [KL] KOG1001 Helicase-like transcription factor HLTF/DNA helicase
RAD5 DEAD-box superfamily
Length = 1287
Score = 86.7 bits (213), Expect = 2e-16
Identities = 44/126 (34%), Positives = 75/126 (58%), Gaps = 1/126 (0%)
Query: 463 GSRVLIFSQMSRVLDILEDYCYFREYEYCRIDGSTAHEDRINAIDDYNAPDSKKFIFLLT 522
G + ++FSQ +++L++LE +Y R+DG+ + R A+ D+N + +++
Sbjct: 1130 GEKAIVFSQWTKMLNLLEASLVSSHIQYRRLDGTMSVAARDKAVQDFNTLPEVT-VMIMS 1188
Query: 523 TRAGGLGINLTTADIVVLYDSDWNPQADLQAMDRAHRIGQKKQVRVFRFVTDNSVEEKIL 582
+A LG+N+ A V++ D WNP + QA+DRAHRIGQ + V V RF ++VE++IL
Sbjct: 1189 LKAASLGLNMVAACHVLMLDLWWNPTTEDQAIDRAHRIGQTRPVTVVRFTVKDTVEDRIL 1248
Query: 583 ERATQK 588
+K
Sbjct: 1249 ALQQKK 1254
Score = 59.3 bits (142), Expect = 3e-08
Identities = 45/182 (24%), Positives = 85/182 (45%), Gaps = 17/182 (9%)
Query: 260 KIDWEYVVIDEAHRIKNEESMLSQVLREFSSRNRLLITGTPLQNNLHELWALLNFLLPDI 319
K+ W VV+DEA IKN ++ +++ ++ R ++GTP+QN++ +L++ FL D
Sbjct: 791 KVSWFRVVLDEAQSIKNYKTQVARACWGLRAKRRWCLSGTPIQNSIDDLYSYFRFLKYDP 850
Query: 320 FADSATXXXXXXXXXXXXXXXXVVKQLHTVLSPFLLRRIKNDVEGSLLPKKELNVYVGMS 379
++ S ++L +L +LRR K GSLL K + S
Sbjct: 851 YS-SYVLFCSTIKNPITRNPVKGYQKLQAILKTVMLRRTK----GSLLDGKPIISLPPKS 905
Query: 380 SMQKKWYKQILEKDIDAVNGSNGQ------------KESKTRLLNIVMQLRKCCNHPYLF 427
+K + E+D + + + K++ +L ++++LR+ C+HP L
Sbjct: 906 IELRKVDFTVEERDFYSKLEAESRTQFREYAEAGTVKQNYVNILLMLLRLRQACDHPLLV 965
Query: 428 DG 429
+G
Sbjct: 966 NG 967
>YOR191w [KL] KOG1001 Helicase-like transcription factor HLTF/DNA helicase
RAD5 DEAD-box superfamily
Length = 1619
Score = 85.9 bits (211), Expect = 3e-16
Identities = 85/358 (23%), Positives = 149/358 (40%), Gaps = 76/358 (21%)
Query: 133 SPAYVNGQLRPYQIQGLNWLVALHKN-QLAGILADEMGLGKTLQTIAFLGYLRYIEKKNG 191
+P + L +Q GL+WL+ + + + G+LAD+MGLGKT+Q IA + R E K
Sbjct: 935 TPEDMTVNLLKHQRLGLHWLLQVENSAKKGGLLADDMGLGKTIQAIALMLANRSEESKCK 994
Query: 192 PFLVIAPKSTLNNWLREIN---RWTPEVSAFILQGDKEERSKLCHDKLLACDFDICVASY 248
L++AP S L W E+ + + + FI G + K D +D + SY
Sbjct: 995 TNLIVAPVSVLRVWKGELETKVKKRAKFTTFIFGGSGNGKVKHWRD---LARYDAVLVSY 1051
Query: 249 EIIIRE--KASFKKIDWEY----------------------------------VVIDEAH 272
+ + E K KK+D E +++DE
Sbjct: 1052 QTLANEFKKHWPKKLDGEQNQLPAVPHIQALNRLKTSNEYYSPFFCNDSTFYRILLDEGQ 1111
Query: 273 RIKNEESMLSQVLREFSSRNRLLITGTPLQNNLHELWALLNFL-LPDIFAD-------SA 324
IKN+ + S+ + R +++GTP+QN++ EL++L+ FL +P +
Sbjct: 1112 NIKNKNTRASKACCTINGMYRWVLSGTPIQNSMDELYSLIRFLRIPPYHKEQRFKLDIGR 1171
Query: 325 TXXXXXXXXXXXXXXXXVVKQLHTVLSPFLLRRIKND----------------VEGSLLP 368
++++ +L+ +LRR K D V+ S L
Sbjct: 1172 FFQRNKQYQYDNEDRKNALRKVRVLLNAIMLRRSKADKIDGKPLLELPPKIVEVDESRLK 1231
Query: 369 KKELNVYVGMSSMQKKWYKQILEKDIDAVNGSNGQKESKTRLLNIVMQLRKCCNHPYL 426
+EL Y + S + K++L +N + S + +L ++++LR+ C H L
Sbjct: 1232 GEELKFYTALESKNQALAKKLL---------NNSTRGSYSSVLTLLLRLRQACCHSEL 1280
Score = 80.5 bits (197), Expect = 1e-14
Identities = 45/138 (32%), Positives = 80/138 (57%), Gaps = 2/138 (1%)
Query: 465 RVLIFSQMSRVLDILEDYCYFR-EYEYCRIDGSTAHEDRINAIDDYNAPDSKKFIFLLTT 523
+++IFSQ + +ILE + + + Y + GS + R + I+++ D +K I L++
Sbjct: 1463 KIIIFSQFTTFFEILEHFLKNKLNFPYLKYIGSMNAQRRSDVINEFYR-DPEKRILLISM 1521
Query: 524 RAGGLGINLTTADIVVLYDSDWNPQADLQAMDRAHRIGQKKQVRVFRFVTDNSVEEKILE 583
+AG G+ LT A+ VV+ D WNP + QA DR +RI Q K+V+V + +SVE++I E
Sbjct: 1522 KAGNSGLTLTCANHVVIVDPFWNPYVEEQAQDRCYRISQTKKVQVHKLFIKDSVEDRISE 1581
Query: 584 RATQKLKLDQLVIQQGRV 601
+K ++ + G++
Sbjct: 1582 LQKRKKEMVDSAMDPGKI 1599
>CE17314 [K] KOG1015 Transcription regulator XNP/ATRX DEAD-box superfamily
Length = 1359
Score = 85.9 bits (211), Expect = 3e-16
Identities = 66/224 (29%), Positives = 100/224 (44%), Gaps = 45/224 (20%)
Query: 141 LRPYQIQGLNWLV--------ALHKNQLAGILADEMGLGKTLQTIAFLGYLRYIEK---K 189
L+P+Q G+ ++ L GILA MGLGKTLQ I FL + EK K
Sbjct: 463 LKPHQAHGIQFMYDCAFESLDRLDTEGSGGILAHCMGLGKTLQVITFLHTVLMHEKIGEK 522
Query: 190 NGPFLVIAPKSTLNNWLREINRW------------TPEVSAFILQGDKEERSKLCHDKLL 237
LV+ PK+ + NW +E +W E+ ++ D+ K H
Sbjct: 523 CKRVLVVVPKNVIINWFKEFQKWLVDNDEELDTIDVNELDSYKTIEDRRRALKAWHSSKT 582
Query: 238 ACDFDICVASYEIIIRE------------------KASFKKI----DWEYVVIDEAHRIK 275
I + I+ E K F+K + VV DEAH++K
Sbjct: 583 PSVMIIGYDLFRILTVEDDPKKKKPKNRNRRLEKAKEDFRKYLQNPGPDMVVCDEAHKLK 642
Query: 276 NEESMLSQVLREFSSRNRLLITGTPLQNNLHELWALLNFLLPDI 319
N++S LS+ + + ++ R+ +TGTPLQNNL E ++NF+ P +
Sbjct: 643 NDDSALSKCMVKILTKRRICLTGTPLQNNLMEYHCMVNFVKPGL 686
Score = 80.5 bits (197), Expect = 1e-14
Identities = 39/123 (31%), Positives = 68/123 (54%), Gaps = 1/123 (0%)
Query: 480 EDYCYFREYEYCRIDGSTAHEDRINAIDDYNAP-DSKKFIFLLTTRAGGLGINLTTADIV 538
E + + +Y IDGS R +N P + + + L++TRAG LG N+ A+ V
Sbjct: 1006 ETWSWLEGEDYMTIDGSVQSGKRDAVQTSFNDPLNLRARLMLISTRAGSLGTNMVAANRV 1065
Query: 539 VLYDSDWNPQADLQAMDRAHRIGQKKQVRVFRFVTDNSVEEKILERATQKLKLDQLVIQQ 598
+++D+ WNP D Q++ R +R GQ K V ++RF+ ++EE+I +R K V+ +
Sbjct: 1066 IIFDACWNPSHDTQSLFRVYRFGQTKPVYIYRFIAQGTMEERIYKRQVTKESTSMRVVDE 1125
Query: 599 GRV 601
++
Sbjct: 1126 AQI 1128
>At1g05120 [L] KOG1002 Nucleotide excision repair protein RAD16
Length = 833
Score = 84.7 bits (208), Expect = 7e-16
Identities = 47/126 (37%), Positives = 73/126 (57%), Gaps = 3/126 (2%)
Query: 464 SRVLIFSQMSRVLDILEDYCYFREYEYCRIDGSTAHEDRINAIDDYNA-PDSKKFIFLLT 522
++ ++FSQ + LD++ ++ GS R AI+ + PD + +FL++
Sbjct: 681 AKAIVFSQFTSFLDLINYTLGKCGVSCVQLVGSMTMAARDTAINKFKEDPDCR--VFLMS 738
Query: 523 TRAGGLGINLTTADIVVLYDSDWNPQADLQAMDRAHRIGQKKQVRVFRFVTDNSVEEKIL 582
+AGG+ +NLT A V + D WNP + QA DR HRIGQ K +RV RF+ +N+VEE+IL
Sbjct: 739 LKAGGVALNLTVASHVFMMDPWWNPAVERQAQDRIHRIGQYKPIRVVRFIIENTVEERIL 798
Query: 583 ERATQK 588
+K
Sbjct: 799 RLQKKK 804
Score = 55.8 bits (133), Expect = 4e-07
Identities = 38/128 (29%), Positives = 64/128 (49%), Gaps = 8/128 (6%)
Query: 132 ESPAYVNGQLRPYQIQGLNWLVALHKNQLAGILADEMGLGKTLQTIAFLGYLRYIEKKN- 190
E P+ + L YQ + L W ++ GILADEMG+GKT+Q I+ + R +++
Sbjct: 130 EPPSDLIMPLLRYQKEFLAWATKQEQSVAGGILADEMGMGKTIQAISLVLARREVDRAQF 189
Query: 191 ----GPFLVIAPKSTLNNWLREINRWTPEVSAFILQGDKEERSKLCHDKLLACDFDICVA 246
G LV+ P ++ WL EI R+T S +L +R+K + + ++D +
Sbjct: 190 GEAAGCTLVLCPLVAVSQWLNEIARFTSPGSTKVLVYHGAKRAKNIKEFM---NYDFVLT 246
Query: 247 SYEIIIRE 254
+Y + E
Sbjct: 247 TYSTVESE 254
Score = 51.6 bits (122), Expect = 7e-06
Identities = 22/63 (34%), Positives = 38/63 (59%)
Query: 253 REKASFKKIDWEYVVIDEAHRIKNEESMLSQVLREFSSRNRLLITGTPLQNNLHELWALL 312
+EK+ + W +++DEAH IK S ++ + + R ++GTPLQN + EL++L+
Sbjct: 344 KEKSLLHSVKWNRIILDEAHYIKERRSNTARAVFALEATYRWALSGTPLQNRVGELYSLI 403
Query: 313 NFL 315
FL
Sbjct: 404 RFL 406
>At3g20010 [KL] KOG1001 Helicase-like transcription factor HLTF/DNA helicase
RAD5 DEAD-box superfamily
Length = 1047
Score = 84.0 bits (206), Expect = 1e-15
Identities = 47/125 (37%), Positives = 77/125 (61%), Gaps = 3/125 (2%)
Query: 465 RVLIFSQMSRVLDILEDYCYFREYEYCRIDGSTAHEDRINAIDDYNA-PDSKKFIFLLTT 523
+ +IFSQ + +LD++E E+ R+DG+ + R A+ +++ PD K + L++
Sbjct: 894 KTIIFSQWTGMLDLVELRILESGIEFRRLDGTMSLAARDRAVKEFSKKPDVK--VMLMSL 951
Query: 524 RAGGLGINLTTADIVVLYDSDWNPQADLQAMDRAHRIGQKKQVRVFRFVTDNSVEEKILE 583
+AG LG+N+ A V+L D WNP + QA+DRAHRIGQ + V V R ++VE++IL+
Sbjct: 952 KAGNLGLNMVAACHVILLDLWWNPTTEDQAIDRAHRIGQTRPVTVTRITIKDTVEDRILK 1011
Query: 584 RATQK 588
+K
Sbjct: 1012 LQEEK 1016
Score = 63.5 bits (153), Expect = 2e-09
Identities = 48/176 (27%), Positives = 86/176 (48%), Gaps = 11/176 (6%)
Query: 260 KIDWEYVVIDEAHRIKNEESMLSQVLREFSSRNRLLITGTPLQNNLHELWALLNFLLPDI 319
K+ W +V+DEA IKN + +++ ++ R ++GTP+QN + +L++ FL D
Sbjct: 539 KVGWFRIVLDEAQTIKNYRTQMARSCCTLRAKRRWCLSGTPIQNTIDDLYSYFRFLRYDP 598
Query: 320 FADSATXXXXXXXXXXXXXXXXVVKQLHTVLSPFLLRRIKND-VEGS---LLPKKELNV- 374
+A + K+L VL +LRR K ++G LP K +N+
Sbjct: 599 YAVYKSFYSTIKVPISRNSCQG-YKKLQAVLRAIMLRRTKGTLLDGKPIINLPPKVVNLS 657
Query: 375 YVGMSSMQKKWYKQILEKD----IDAVNGSNGQKESKTRLLNIVMQLRKCCNHPYL 426
V S ++ +YK+ LE D A + ++ +L ++++LR+ C+HP L
Sbjct: 658 QVDFSVAERSFYKK-LEADSRSQFKAYADAGTLSQNYANILLLLLRLRQACDHPQL 712
>Hs19923174 [KL] KOG4439 RNA polymerase II transcription termination factor
TTF2/lodestar DEAD-box superfamily
Length = 1162
Score = 82.8 bits (203), Expect = 3e-15
Identities = 45/130 (34%), Positives = 76/130 (57%), Gaps = 1/130 (0%)
Query: 467 LIFSQMSRVLDILEDYCYFREYEYCRIDGSTAHEDRINAIDDYNAPDSKKFIFLLTTRAG 526
+I SQ + +L ++ + Y IDGS + R++ ++ +N + + L++ AG
Sbjct: 1013 VIVSQWTNMLKVVALHLKKHGLTYATIDGSVNPKQRMDLVEAFNHSRGPQ-VMLISLLAG 1071
Query: 527 GLGINLTTADIVVLYDSDWNPQADLQAMDRAHRIGQKKQVRVFRFVTDNSVEEKILERAT 586
G+G+NLT + + L D WNP + QA DR +R+GQ+K V + RFV + +VEEKIL+
Sbjct: 1072 GVGLNLTGGNHLFLLDMHWNPSLEDQACDRIYRVGQQKDVVIHRFVCEGTVEEKILQLQE 1131
Query: 587 QKLKLDQLVI 596
+K L + V+
Sbjct: 1132 KKKDLAKQVL 1141
Score = 80.5 bits (197), Expect = 1e-14
Identities = 61/229 (26%), Positives = 106/229 (45%), Gaps = 51/229 (22%)
Query: 132 ESPAYVNGQLRPYQIQGLNWLVALHKNQ-LAGILADEMGLGKTLQTIAFLGYLRYIEKKN 190
E PA + L +Q Q L WL+ + GILAD+MGLGKTL IA + + EKK
Sbjct: 561 EDPAGLKVPLLLHQKQALAWLLWRESQKPQGGILADDMGLGKTLTMIALILTQKNQEKKE 620
Query: 191 GP---------------------FLVIAPKSTLNNWLREINRW--TPEVSAFILQG-DKE 226
L+I P S +++W E+ + + ++ ++ G +++
Sbjct: 621 EKEKSTALTWLSKDDSCDFTSHGTLIICPASLIHHWKNEVEKRVNSNKLRVYLYHGPNRD 680
Query: 227 ERSKLCHDKLLACDFDICVASYEIIIREKASFK--------------------KIDWEYV 266
R+++ +DI + +Y ++ +E + K +I W +
Sbjct: 681 SRARVLST------YDIVITTYSLVAKEIPTNKQEAEIPGANLNVEGTSTPLLRIAWARI 734
Query: 267 VIDEAHRIKNEESMLSQVLREFSSRNRLLITGTPLQNNLHELWALLNFL 315
++DEAH +KN S + + + R +TGTP+QNNL ++++LL FL
Sbjct: 735 ILDEAHNVKNPRVQTSIAVCKLQACARWAVTGTPIQNNLLDMYSLLKFL 783
>7298962 [KL] KOG4439 RNA polymerase II transcription termination factor
TTF2/lodestar DEAD-box superfamily
Length = 965
Score = 78.6 bits (192), Expect = 5e-14
Identities = 43/140 (30%), Positives = 80/140 (56%), Gaps = 3/140 (2%)
Query: 465 RVLIFSQMSRVLDILEDYCYFREYEYCRIDGSTAHEDRINAIDDYNAPDSKKFIFLLTTR 524
++++ SQ L I+ +E +G ++R + D+NA + K+ + LL+
Sbjct: 809 KIIVTSQWVSYLAIVRKRLQDLSWETLDFNGQLTAKEREIVLRDFNANNEKR-VLLLSLT 867
Query: 525 AGGLGINLTTADIVVLYDSDWNPQADLQAMDRAHRIGQKKQVRVFRFVTDNSVEEKILER 584
AGG+G+NL A+ +++ D WNPQ + QA DR +R GQ K ++R++ ++VE++I
Sbjct: 868 AGGVGLNLNVANHMLIVDLHWNPQLERQAQDRIYRYGQTKPTFIYRYMCQDTVEQRIKSL 927
Query: 585 ATQKLKLDQLVIQQ--GRVT 602
KL++ ++V+ + G VT
Sbjct: 928 QDCKLEIAKVVLPEEGGEVT 947
Score = 63.9 bits (154), Expect = 1e-09
Identities = 60/293 (20%), Positives = 117/293 (39%), Gaps = 65/293 (22%)
Query: 194 LVIAPKSTLNNWLREINRWTPEVSAFILQGDKEERSKLCHDKLLACDFDICVASYEIIIR 253
LV+ P S + W E+ + + +L R ++ + + +D+ + SY +++
Sbjct: 393 LVVCPMSVMCQWAHEVASKVAQNAIRVLTFHGPNRHEIGIEAFRS--YDLVITSYNLVVN 450
Query: 254 EKASFKK------IDWEYVVIDEAHRIKNEESMLSQVLREFSSRNRLLITGTPLQNNLHE 307
E + + W V++DEAH I+N ++ + + + +TGTP+QN +
Sbjct: 451 ELKRYGNTSPLFAVYWNRVILDEAHIIRNSKTNCCNSVCQLRAHCHWALTGTPVQNRGVD 510
Query: 308 LWALLNFLLPDIFADSATXXXXXXXXXXXXXXXXVVKQLHTVLSPFLLRRIKNDVEGS-- 365
++ALL F+ F D ++L+ ++ P +LRR K ++ S
Sbjct: 511 VFALLRFVNVPNFQDLQQWKKNLNESMLGH------RRLNFIIKPLMLRRTKQKLQASGD 564
Query: 366 --------------LLPKKELNVYVGMSSMQKK--------------------------- 384
L K E+ VY +S++ KK
Sbjct: 565 MPALPSLKIELICVQLSKTEMAVYQILSAISKKIFTQFLLQREKGNSDLNYYSLERTPQF 624
Query: 385 --------WYKQILEKDIDAVNGSNGQKESKTRLLNIVMQLRKCCNHPYLFDG 429
Y +I E+ + ++ + G+K +L ++++LR+ C HP L G
Sbjct: 625 IAGHMSDERYNEIYERFLKSLGYNPGEKILGIYILVLLLRLRQFCCHPGLMIG 677
>CE11450 [KL] KOG4439 RNA polymerase II transcription termination factor
TTF2/lodestar DEAD-box superfamily
Length = 518
Score = 77.0 bits (188), Expect = 1e-13
Identities = 36/108 (33%), Positives = 61/108 (56%)
Query: 490 YCRIDGSTAHEDRINAIDDYNAPDSKKFIFLLTTRAGGLGINLTTADIVVLYDSDWNPQA 549
Y I G A +DR +D +N LL+ AGG+G+NL + +++ D WNP
Sbjct: 382 YTSITGEVAIKDRQERVDSFNQEKGGAQDMLLSLTAGGVGLNLIGGNHLIMVDLHWNPAL 441
Query: 550 DLQAMDRAHRIGQKKQVRVFRFVTDNSVEEKILERATQKLKLDQLVIQ 597
+ QA DR +R+GQKK+V + R + ++E++++ +KL L V++
Sbjct: 442 EQQACDRIYRMGQKKEVHIHRLIVKETIEQRVMSLQEKKLALAASVLE 489
Score = 76.6 bits (187), Expect = 2e-13
Identities = 55/189 (29%), Positives = 92/189 (48%), Gaps = 15/189 (7%)
Query: 132 ESPAYVNGQLRPYQIQGLNWLVALHKN-QLAGILADEMGLGKTLQTIAFLGYLRYIEK-- 188
E+P L P+Q GL WL+ GIL +MGLGKTL I+ + + + K
Sbjct: 135 ETPDGFLVDLMPHQKAGLCWLLWRESQPHSGGILGGDMGLGKTLSMISLIVHQKAARKTR 194
Query: 189 KNGPFLVIAPKSTLNNWLREINRWTPE--VSAFILQGDKEERSKLCHDKLLACDFDI--- 243
K+ IAP+S +++W EI R + +S + G++ + K + D+D+
Sbjct: 195 KDAGDDAIAPESLVHHWEAEIARRLKQDLLSVLVYHGNRRHINPKDLKKHIELDYDLEDE 254
Query: 244 ---CVASYEIII----REKASFKKIDWEYVVIDEAHRIKNEESMLSQVLREFSSRNRLLI 296
C + + + +I W YV++DEAH IKN + S+ + S+ +R +
Sbjct: 255 HNPCSKLRPRVCPKADKNSSPLARIAWSYVILDEAHIIKNRNAQCSEAACKISAFSRWCL 314
Query: 297 TGTPLQNNL 305
+GTP+ NN+
Sbjct: 315 SGTPIHNNM 323
>Hs22048060 [K] KOG0384 Chromodomain-helicase DNA-binding protein
Length = 122
Score = 70.9 bits (172), Expect = 1e-11
Identities = 31/69 (44%), Positives = 45/69 (64%)
Query: 163 ILADEMGLGKTLQTIAFLGYLRYIEKKNGPFLVIAPKSTLNNWLREINRWTPEVSAFILQ 222
ILADEMGLGKT+Q I+FL YL + + GPFL++ P ST+ +W RE W +++ +
Sbjct: 33 ILADEMGLGKTIQVISFLSYLFNVHQLYGPFLIVVPLSTMTSWQREFEAWDSKMNVVVYI 92
Query: 223 GDKEERSKL 231
GD R+ +
Sbjct: 93 GDINSRNSV 101
>SPAC144.05 [L] KOG0298 DEAD box-containing helicase-like transcription
factor/DNA repair protein
Length = 1375
Score = 69.3 bits (168), Expect = 3e-11
Identities = 75/328 (22%), Positives = 138/328 (41%), Gaps = 53/328 (16%)
Query: 162 GILADEMGLGKTLQTIAFLGYLRY------------IEKKNGPF----LVIAPKSTLNNW 205
GILADEMG+GKTL+ + + + + + KN + L+I P + L+ W
Sbjct: 286 GILADEMGMGKTLEVLGLVLHHQLPISLTDTCTFDQVVGKNVKYSKATLIITPSTILDQW 345
Query: 206 LREINRWTPEVSAFILQGDKEERSKLCHDKLLACDFDICVASY-----EIIIRE------ 254
L EI+ P + F QG ++ L CD I V SY E++ E
Sbjct: 346 LSEIDLHVPSLKVFHYQGIRKSNGLKSAKIFLDCD--IVVTSYSDLRFELLYTESHSRTL 403
Query: 255 ---------KASFKKIDWEYVVIDEAHRIKNEESMLSQVLREFSSRNRLLITGTPLQNNL 305
K+ + W + +DEA ++ +S ++Q++ N ++GTP+++ +
Sbjct: 404 RHEKRHVSPKSPLIDVCWWRICVDEAQMVETSQSNVAQMIYRIPRVNCWTVSGTPVRSEV 463
Query: 306 HELWALLNFLLPDIFADSATXXXXXXXXXXXXXXXXVVKQLHTVLSPFLLRRIKNDVEGS 365
+L+ LL FLL + V++ + + R K DVE
Sbjct: 464 DDLFGLL-FLL-----RYSPMYLYKKQAWMQIIEKKRVREFCDLFGSLVCRHSKQDVEEE 517
Query: 366 LL--PKKELNVYVGMSSMQKKWYKQILE---KDIDAVNGSNGQKESKTRLLNIVMQLRKC 420
L P+ + + +S +++ Y+ +L K + N + + +++LR+
Sbjct: 518 LKLPPQHRICMTTRLSVVEETNYQDLLSEAAKSLHFFKDRNLDLCDEESMRRWLVRLRQA 577
Query: 421 CNHPYLFDGAEP----GPPYTTDEHLVY 444
C HP + G + GP + ++ LV+
Sbjct: 578 CCHPQVGFGNKSAFGGGPMKSINDVLVF 605
Score = 51.6 bits (122), Expect = 7e-06
Identities = 37/131 (28%), Positives = 66/131 (50%), Gaps = 6/131 (4%)
Query: 465 RVLIFSQMSRVLDILEDYCYFREYEYCRIDGSTAHEDRINAIDDYNAPDSKKFIFLLTTR 524
+V++FSQ VLD+L + R DG + + + + S + + L R
Sbjct: 1206 KVVVFSQWLDVLDVLHKSFEANGIVFIRFDGKSKN----TCLKRFKEERSLQ-VLTLHAR 1260
Query: 525 AGGLGINLTTADIVVLYDSDWNPQADLQAMDRAHRIGQKKQVRVFRFVTDNSVEEKILER 584
+ G+ LT A V + + N ++QA+ R HRIGQ + V+ ++ +++VE IL
Sbjct: 1261 SQSSGLTLTNATHVFMCEPLLNSGIEMQAISRVHRIGQTRPTFVYYYIVEDTVEGHILNL 1320
Query: 585 A-TQKLKLDQL 594
+ T+ +LD+L
Sbjct: 1321 SLTKHEQLDKL 1331
>At5g07810 [B] KOG1000 Chromatin remodeling protein HARP/SMARCAL1 DEAD-box
superfamily
Length = 1178
Score = 67.4 bits (163), Expect = 1e-10
Identities = 38/126 (30%), Positives = 68/126 (53%), Gaps = 1/126 (0%)
Query: 464 SRVLIFSQMSRVLDILEDYCYFREYEYCRIDGSTAHEDRINAIDDYNAPDSKKFIFLLTT 523
+++++F+ +VLD ++++ + + RIDG+T DR A+ + K I ++
Sbjct: 543 TKMVVFAHHHKVLDGIQEFICDKGIGFVRIDGTTLPRDRQLAVQSFQFSSEVK-IAIIGV 601
Query: 524 RAGGLGINLTTADIVVLYDSDWNPQADLQAMDRAHRIGQKKQVRVFRFVTDNSVEEKILE 583
AGG+G++ + A VV + P LQA DRAHR GQ V V+ F ++++E +
Sbjct: 602 EAGGVGLDFSAAQNVVFLELPKTPSLLLQAEDRAHRRGQTSAVNVYIFCAKDTMDESNWQ 661
Query: 584 RATQKL 589
+KL
Sbjct: 662 NLNKKL 667
Score = 57.4 bits (137), Expect = 1e-07
Identities = 46/176 (26%), Positives = 80/176 (45%), Gaps = 22/176 (12%)
Query: 134 PAYVNGQLRPYQIQGLNWLVALHKNQLAGILADEMGLGKTLQTIAFLGYLRYIEKKNGPF 193
P + L P+Q+ GL + L + +ADEMGLGKTLQ IA G G
Sbjct: 197 PRKLVNALLPFQLDGLRF--GLRRGGRC-FIADEMGLGKTLQAIAIAGCF----ISEGSI 249
Query: 194 LVIAPKSTLNNWLREINRWTPEV---SAFILQGDKEERSKLCHDKLLACDFDICVASYEI 250
LV+ P W E+ RW P ++ G ++ + L + V SY++
Sbjct: 250 LVVCPAVLRFTWAEELERWLPSCLPSDVHLVFGHQDNPAYLPRWP------KVVVISYKM 303
Query: 251 IIREKASFKKIDWEYVVIDEAHRI-----KNEESMLSQVLREFSS-RNRLLITGTP 300
+ + + + +W +++DE+H + K++ + VL ++ +L++GTP
Sbjct: 304 LQHLRTTMLEREWALLIVDESHHLRCSKKKSDPPEIKTVLDVAEKVKHIILLSGTP 359
>Hs17441908 [B] KOG1000 Chromatin remodeling protein HARP/SMARCAL1 DEAD-box
superfamily
Length = 215
Score = 63.5 bits (153), Expect = 2e-09
Identities = 38/137 (27%), Positives = 70/137 (50%), Gaps = 11/137 (8%)
Query: 168 MGLGKTLQTIAFLGYLRYIEKKNGPFLVIAPKSTLNNWLREINRWTPEVSAFILQ--GDK 225
MGLGKT+Q I + Y K+ P L++ P S W EI +W PE+S + +K
Sbjct: 1 MGLGKTIQAIG----ITYFYKEEWPLLIVVPSSLRYPWTEEIEKWIPELSPEEINVIQNK 56
Query: 226 EERSKLCHDKLLACDFDICVASYEIIIREKASFKKIDWEYVVIDEAHRIKNEESMLSQVL 285
+ ++ K+ + + A + +I + +++ V++DE+H +K+ + S++L
Sbjct: 57 TDVRRMSTSKVTVLGYGLLTADAKTLI---DALNNQNFKVVIVDESHYMKSRNATRSRIL 113
Query: 286 REF--SSRNRLLITGTP 300
+R +L+TGTP
Sbjct: 114 LPIVQKARRAILLTGTP 130
>SPAC13G6.01c [KL] KOG1001 Helicase-like transcription factor HLTF/DNA helicase
RAD5 DEAD-box superfamily
Length = 104
Score = 63.2 bits (152), Expect = 2e-09
Identities = 28/71 (39%), Positives = 50/71 (69%)
Query: 518 IFLLTTRAGGLGINLTTADIVVLYDSDWNPQADLQAMDRAHRIGQKKQVRVFRFVTDNSV 577
+ +++ +AGG+G+NLT A+ V + D W+ + QA+DR HR+GQ+K V V R++ ++V
Sbjct: 6 VLIISLKAGGVGLNLTCANHVFIMDPWWSWSVEAQAIDRIHRLGQEKPVFVTRYIVRDTV 65
Query: 578 EEKILERATQK 588
EE++L+ +K
Sbjct: 66 EERMLKIQERK 76
>At2g40770 [L] KOG0298 DEAD box-containing helicase-like transcription
factor/DNA repair protein
Length = 1648
Score = 63.2 bits (152), Expect = 2e-09
Identities = 40/128 (31%), Positives = 61/128 (47%), Gaps = 10/128 (7%)
Query: 464 SRVLIFSQMSRVLDILEDYCYFREYEYCRIDGSTAHEDRINAI----------DDYNAPD 513
++VL+FS + VLD+LE R+ G + I+ + + +
Sbjct: 1434 TKVLVFSSWNDVLDVLEHAFAANSITCIRMKGGRKSQTAISKFKGSEKETQKTNSHQKEE 1493
Query: 514 SKKFIFLLTTRAGGLGINLTTADIVVLYDSDWNPQADLQAMDRAHRIGQKKQVRVFRFVT 573
+ LL + G G+NL A V+L + NP A+ QA+ R HRIGQ+K V RF+
Sbjct: 1494 KSIQVLLLLVQHGANGLNLLEAQHVILVEPLLNPAAEAQAVGRVHRIGQEKPTLVHRFLV 1553
Query: 574 DNSVEEKI 581
+VEE I
Sbjct: 1554 SGTVEESI 1561
>At3g42670 [L] KOG0390 DNA repair protein SNF2 family
Length = 1256
Score = 62.8 bits (151), Expect = 3e-09
Identities = 40/139 (28%), Positives = 71/139 (50%), Gaps = 5/139 (3%)
Query: 465 RVLIF----SQMSRVLDILED-YCYFREYEYCRIDGSTAHEDRINAIDDYNAPDSKKFIF 519
++LIF + + L++ E+ + + R E + G +R ID + P + +
Sbjct: 1074 KILIFCHNIAPIRLFLELFENVFRWKRGRELLTLTGDLELFERGRVIDKFEEPGGQSRVL 1133
Query: 520 LLTTRAGGLGINLTTADIVVLYDSDWNPQADLQAMDRAHRIGQKKQVRVFRFVTDNSVEE 579
L + A GI+LT A V++ DS+WNP QA+ RA R GQ+K V V++ ++ ++EE
Sbjct: 1134 LASITACAEGISLTAASRVIMLDSEWNPSKTKQAIARAFRPGQQKVVYVYQLLSRGTLEE 1193
Query: 580 KILERATQKLKLDQLVIQQ 598
R T K + ++ +
Sbjct: 1194 DKYRRTTWKEWVSSMIFSE 1212
>Hs20532976 [B] KOG1000 Chromatin remodeling protein HARP/SMARCAL1 DEAD-box
superfamily
Length = 293
Score = 61.2 bits (147), Expect = 8e-09
Identities = 34/115 (29%), Positives = 61/115 (52%), Gaps = 3/115 (2%)
Query: 465 RVLIFSQMSRVLDILEDYCYFREYEYCRIDGSTAHEDRINAIDDYNA-PDSKKFIFLLTT 523
+ L+F+ +L + + Y RIDGS + +RI+ ++ + PD++ + +L+
Sbjct: 88 KFLVFAHHLSMLQACTEAVIENKTRYIRIDGSVSSSERIHLVNQFQKDPDTR--VAILSI 145
Query: 524 RAGGLGINLTTADIVVLYDSDWNPQADLQAMDRAHRIGQKKQVRVFRFVTDNSVE 578
+A G G+ T A VV + W+P QA DRAHRIGQ V + + + +++
Sbjct: 146 QAAGQGLTFTAASHVVFAELYWDPGHIKQAEDRAHRIGQCSSVNIHYLIANGTLD 200
>At5g20420 [L] KOG0390 DNA repair protein SNF2 family
Length = 1261
Score = 60.8 bits (146), Expect = 1e-08
Identities = 35/103 (33%), Positives = 53/103 (50%)
Query: 486 REYEYCRIDGSTAHEDRINAIDDYNAPDSKKFIFLLTTRAGGLGINLTTADIVVLYDSDW 545
R E + G +R ID + P + + L + A GI+LT A V++ DS+W
Sbjct: 1106 RGREILTLTGDLELFERGRVIDKFEEPGNPSRVLLASITACAEGISLTAASRVIMLDSEW 1165
Query: 546 NPQADLQAMDRAHRIGQKKQVRVFRFVTDNSVEEKILERATQK 588
NP QA+ RA R GQ+K V V++ ++ ++EE R T K
Sbjct: 1166 NPSKTKQAIARAFRPGQQKVVYVYQLLSRGTLEEDKYRRTTWK 1208
>CE23294 [KL] KOG4439 RNA polymerase II transcription termination factor
TTF2/lodestar DEAD-box superfamily
Length = 540
Score = 60.5 bits (145), Expect = 1e-08
Identities = 51/199 (25%), Positives = 91/199 (45%), Gaps = 26/199 (13%)
Query: 140 QLRPYQIQGLNWLVALHKNQLAG-ILADEMGLGKTLQTIAFL--------GYLRYIEKKN 190
+L P+Q +W++ + +G IL G GKT IA + + E+K+
Sbjct: 43 RLMPHQEAARDWMIDREAQEPSGGILGLAHGQGKTAIVIALILDQKIKCASNDKKFEQKS 102
Query: 191 GPFLVIAPKSTLNNWLREINRWTPE--VSAFILQGDK--EERSKLCHDKLLACDFDICVA 246
P L+I PK + W E E +S ++ D+ E R + +L +D+ +
Sbjct: 103 -PTLIIVPKRIIYQWYDEFKDRLEENALSVYLYYDDEFSEARKNISASELQK--YDVVLT 159
Query: 247 SYEII-IREKAS---------FKKIDWEYVVIDEAHRIKNEESMLSQVLREFSSRNRLLI 296
+Y + ++EK + I W +V+DEAH I++ + S + +S+NR +
Sbjct: 160 TYRNVPVKEKDETGEKVSKQVLQNIKWTRIVLDEAHNIRDSNTKKSTAIATLASKNRWCV 219
Query: 297 TGTPLQNNLHELWALLNFL 315
T P QN+ ++ L+ FL
Sbjct: 220 TAAPFQNSEWDICNLILFL 238
>7295362 [L] KOG0298 DEAD box-containing helicase-like transcription
factor/DNA repair protein
Length = 1270
Score = 56.6 bits (135), Expect = 2e-07
Identities = 30/80 (37%), Positives = 42/80 (52%)
Query: 507 DDYNAPDSKKFIFLLTTRAGGLGINLTTADIVVLYDSDWNPQADLQAMDRAHRIGQKKQV 566
DD+ P S L+ G G+NL A V L + NP + QA+ R HR GQK+
Sbjct: 1160 DDFKNPLSNVTCLLMPLSKGSKGLNLIEATHVFLVEPILNPGDERQAIGRIHRFGQKRPT 1219
Query: 567 RVFRFVTDNSVEEKILERAT 586
+V RF+ + ++EE IL T
Sbjct: 1220 KVHRFIVNETIEENILSLIT 1239
>SPAC11E3.01c [R] KOG0391 SNF2 family DNA-dependent ATPase
Length = 193
Score = 54.3 bits (129), Expect = 1e-06
Identities = 24/50 (48%), Positives = 35/50 (70%)
Query: 553 AMDRAHRIGQKKQVRVFRFVTDNSVEEKILERATQKLKLDQLVIQQGRVT 602
A DR+HRIGQ + V ++R +++ +VE +L RA QK LD++VIQ G T
Sbjct: 1 AQDRSHRIGQTRDVHIYRLISEYTVESNMLRRANQKRMLDKIVIQGGEFT 50
>YLR247c [L] KOG0298 DEAD box-containing helicase-like transcription
factor/DNA repair protein
Length = 1556
Score = 52.0 bits (123), Expect = 5e-06
Identities = 36/118 (30%), Positives = 60/118 (50%), Gaps = 3/118 (2%)
Query: 465 RVLIFSQMSRVLDILEDYCYFREYEYCRIDGSTAHEDRINAIDDYNAPDSKKFIFLLTTR 524
+V+++SQ + L ++ E+ +TA+ I+++ S + LL +
Sbjct: 1381 QVILYSQKTEYLKVIGKVLKLYHIEHLACLSNTANVGE--TINNFKRQPSVTCL-LLNVK 1437
Query: 525 AGGLGINLTTADIVVLYDSDWNPQADLQAMDRAHRIGQKKQVRVFRFVTDNSVEEKIL 582
G G+NL A + L D N +LQAM R +RIGQ ++ V+ F+ N+VEE IL
Sbjct: 1438 TLGAGLNLINAKHIFLLDPILNNSDELQAMGRNNRIGQDEETFVWNFMIRNTVEENIL 1495
>Hs22054523 [L] KOG0298 DEAD box-containing helicase-like transcription
factor/DNA repair protein
Length = 1669
Score = 51.2 bits (121), Expect = 9e-06
Identities = 33/107 (30%), Positives = 52/107 (47%), Gaps = 4/107 (3%)
Query: 475 VLDILEDYCYFREYEYCRIDGSTAHEDRINAIDDYNAPDSKKFIFLLTTRAGGLGINLTT 534
VLDI+ E+ +I ++ ++A D + I LL G G+ +
Sbjct: 1550 VLDIISKALTDNNMEFAQISRVKTFQENLSAFKR----DPQINILLLPLHTGSNGLTIIE 1605
Query: 535 ADIVVLYDSDWNPQADLQAMDRAHRIGQKKQVRVFRFVTDNSVEEKI 581
A V+L + NP +LQA+ R HRIGQ K V RF+ ++EE++
Sbjct: 1606 ATHVLLVEPILNPAHELQAIGRVHRIGQTKPTIVHRFLIKATIEERM 1652
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.317 0.135 0.391
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,067,865
Number of Sequences: 60738
Number of extensions: 2417398
Number of successful extensions: 7367
Number of sequences better than 1.0e-05: 160
Number of HSP's better than 0.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 6426
Number of HSP's gapped (non-prelim): 378
length of query: 1096
length of database: 30,389,216
effective HSP length: 117
effective length of query: 979
effective length of database: 23,282,870
effective search space: 22793929730
effective search space used: 22793929730
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)