ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactVI1861 check: MH A KOG0350 RNA processing and modification DEAD-box ATP-dependent RNA helicase
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactVI1861 667862 665973 -630
(630 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YNR038w [A] KOG0350 DEAD-box ATP-dependent RNA helicase 518 e-146
SPCC285.03 [A] KOG0350 DEAD-box ATP-dependent RNA helicase 225 1e-58
7294064 [A] KOG0350 DEAD-box ATP-dependent RNA helicase 177 4e-44
At4g15850 [A] KOG0350 DEAD-box ATP-dependent RNA helicase 170 7e-42
YLL008w [A] KOG0338 ATP-dependent RNA helicase 148 2e-35
SPAC30D11.03 [A] KOG0338 ATP-dependent RNA helicase 147 5e-35
Hs20149629 [A] KOG0330 ATP-dependent RNA helicase 147 6e-35
7304081 [A] KOG0338 ATP-dependent RNA helicase 147 6e-35
Hs19743937 [A] KOG0338 ATP-dependent RNA helicase 146 1e-34
CE00456 [A] KOG0350 DEAD-box ATP-dependent RNA helicase 144 3e-34
7298752 [A] KOG0330 ATP-dependent RNA helicase 142 2e-33
7293348 [A] KOG0348 ATP-dependent RNA helicase 139 1e-32
SPBC17D1.06 [A] KOG0331 ATP-dependent RNA helicase 138 2e-32
CE27030 [A] KOG0338 ATP-dependent RNA helicase 138 3e-32
CE26853 [A] KOG0342 ATP-dependent RNA helicase pitchoune 138 3e-32
CE00337 [A] KOG0330 ATP-dependent RNA helicase 134 3e-31
YGL078c [A] KOG0331 ATP-dependent RNA helicase 134 5e-31
Hs9506931 [A] KOG0346 RNA helicase 133 9e-31
YHR065c [A] KOG0330 ATP-dependent RNA helicase 132 2e-30
SPAC823.08c [A] KOG0330 ATP-dependent RNA helicase 132 2e-30
SPAC22F3.08c [A] KOG0344 ATP-dependent RNA helicase 131 3e-30
SPAC1093.05 [A] KOG0343 RNA Helicase 130 6e-30
Hs17505907 [A] KOG0348 ATP-dependent RNA helicase 130 8e-30
7299006 [A] KOG0345 ATP-dependent RNA helicase 130 8e-30
YDR194c [A] KOG0342 ATP-dependent RNA helicase pitchoune 129 1e-29
Hs13514831 [A] KOG0343 RNA Helicase 129 2e-29
SPBC21H7.04 [A] KOG0348 ATP-dependent RNA helicase 128 2e-29
Hs15316941 [A] KOG0344 ATP-dependent RNA helicase 127 4e-29
At3g06480 [A] KOG0331 ATP-dependent RNA helicase 127 4e-29
YGL171w [A] KOG0344 ATP-dependent RNA helicase 127 5e-29
Hs10346129 [A] KOG0336 ATP-dependent RNA helicase 127 5e-29
YDL031w [A] KOG0337 ATP-dependent RNA helicase 126 1e-28
At1g77050 [A] KOG0337 ATP-dependent RNA helicase 126 1e-28
YLR276c [A] KOG0346 RNA helicase 125 1e-28
At2g40700 [A] KOG0348 ATP-dependent RNA helicase 125 2e-28
SPBC4F6.07c [A] KOG0347 RNA helicase 125 3e-28
YFL002c [A] KOG0345 ATP-dependent RNA helicase 124 6e-28
ECU10g0440 [A] KOG0330 ATP-dependent RNA helicase 124 6e-28
At5g60990 [A] KOG0330 ATP-dependent RNA helicase 124 6e-28
At2g42520 [A] KOG0335 ATP-dependent RNA helicase 124 6e-28
7294797 [A] KOG0339 ATP-dependent RNA helicase 124 6e-28
7293941 [A] KOG0344 ATP-dependent RNA helicase 124 6e-28
At3g58570 [A] KOG0335 ATP-dependent RNA helicase 123 7e-28
7290853 [A] KOG0331 ATP-dependent RNA helicase 123 1e-27
At4g34910 [A] KOG0346 RNA helicase 122 1e-27
SPAC31A2.07c [A] KOG0337 ATP-dependent RNA helicase 122 2e-27
At1g16280 [A] KOG0340 ATP-dependent RNA helicase 122 2e-27
7295314 [A] KOG0331 ATP-dependent RNA helicase 122 2e-27
CE01341 [J] KOG0327 Translation initiation factor 4F helicase su... 121 3e-27
ECU02g0670 [A] KOG0335 ATP-dependent RNA helicase 121 4e-27
At3g18600 [A] KOG0342 ATP-dependent RNA helicase pitchoune 121 4e-27
7296646 [A] KOG0331 ATP-dependent RNA helicase 121 4e-27
At3g01540 [A] KOG0331 ATP-dependent RNA helicase 120 5e-27
SPCC1494.06c [A] KOG0346 RNA helicase 119 1e-26
At1g55150 [A] KOG0331 ATP-dependent RNA helicase 119 1e-26
CE18785 [A] KOG0331 ATP-dependent RNA helicase 118 2e-26
At5g05450 [A] KOG0345 ATP-dependent RNA helicase 118 2e-26
YDR021w [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 in... 117 4e-26
SPAC1F5.10 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1... 117 4e-26
At5g63120 [A] KOG0331 ATP-dependent RNA helicase 117 4e-26
At3g58510 [A] KOG0335 ATP-dependent RNA helicase 117 4e-26
Hs22057246 [A] KOG0336 ATP-dependent RNA helicase 117 5e-26
YMR290c [A] KOG0342 ATP-dependent RNA helicase pitchoune 117 7e-26
Hs13787206 [A] KOG0342 ATP-dependent RNA helicase pitchoune 117 7e-26
CE03821 [A] KOG0345 ATP-dependent RNA helicase 117 7e-26
At5g65900 [A] KOG0342 ATP-dependent RNA helicase pitchoune 117 7e-26
At5g14610 [A] KOG0331 ATP-dependent RNA helicase 117 7e-26
Hs4759278 [A] KOG0333 U5 snRNP-like RNA helicase subunit 116 1e-25
Hs17474597 [A] KOG0333 U5 snRNP-like RNA helicase subunit 116 1e-25
At4g16630 [A] KOG0338 ATP-dependent RNA helicase 116 1e-25
YJL033w [A] KOG0343 RNA Helicase 115 2e-25
Hs19923595 [A] KOG0337 ATP-dependent RNA helicase 115 2e-25
CE00839 [A] KOG0326 ATP-dependent RNA helicase 115 2e-25
YKR059w [J] KOG0327 Translation initiation factor 4F helicase su... 115 2e-25
YJL138c [J] KOG0327 Translation initiation factor 4F helicase su... 115 2e-25
Hs4503531 [J] KOG0327 Translation initiation factor 4F helicase ... 115 2e-25
At3g61240 [A] KOG0326 ATP-dependent RNA helicase 115 2e-25
CE23814 [A] KOG0340 ATP-dependent RNA helicase 115 3e-25
CE11190 [A] KOG0347 RNA helicase 115 3e-25
At2g45810 [A] KOG0326 ATP-dependent RNA helicase 115 3e-25
Hs4503529 [J] KOG0327 Translation initiation factor 4F helicase ... 114 3e-25
Hs11321632 [A] KOG0339 ATP-dependent RNA helicase 114 3e-25
YKR024c [A] KOG0348 ATP-dependent RNA helicase 114 4e-25
YDR243c [A] KOG0333 U5 snRNP-like RNA helicase subunit 114 4e-25
YBR142w [A] KOG0347 RNA helicase 114 4e-25
7293369 [A] KOG0343 RNA Helicase 114 4e-25
SPBC691.04 [A] KOG0342 ATP-dependent RNA helicase pitchoune 114 6e-25
At5g62190 [A] KOG0331 ATP-dependent RNA helicase 114 6e-25
At2g47330 [A] KOG0339 ATP-dependent RNA helicase 114 6e-25
Hs9507237 [A] KOG0335 ATP-dependent RNA helicase 113 8e-25
Hs21040371 [A] KOG0329 ATP-dependent RNA helicase 113 8e-25
CE27553 [A] KOG0337 ATP-dependent RNA helicase 113 8e-25
CE17559 [A] KOG0339 ATP-dependent RNA helicase 113 8e-25
At3g09720 [A] KOG0344 ATP-dependent RNA helicase 113 8e-25
7300808 [A] KOG0342 ATP-dependent RNA helicase pitchoune 113 8e-25
YDL084w [A] KOG0329 ATP-dependent RNA helicase 112 2e-24
Hs4758112 [A] KOG0329 ATP-dependent RNA helicase 112 2e-24
7293060 [A] KOG0334 RNA helicase 112 2e-24
YNL112w [A] KOG0331 ATP-dependent RNA helicase 112 2e-24
SPAC1F7.02c [A] KOG0342 ATP-dependent RNA helicase pitchoune 112 2e-24
At5g54910 [A] KOG0343 RNA Helicase 112 2e-24
At3g16840 [A] KOG0347 RNA helicase 112 2e-24
7296990 [A] KOG0329 ATP-dependent RNA helicase 112 2e-24
At1g31970 [A] KOG0331 ATP-dependent RNA helicase 111 3e-24
ECU10g1680 [A] KOG0343 RNA Helicase 111 4e-24
CE23832 [A] KOG0341 DEAD-box protein abstrakt 111 4e-24
At2g33730 [A] KOG0333 U5 snRNP-like RNA helicase subunit 111 4e-24
Hs7661920 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 ... 110 5e-24
CE22474 [A] KOG0336 ATP-dependent RNA helicase 110 5e-24
7297048 [J] KOG0327 Translation initiation factor 4F helicase su... 110 5e-24
Hs5453840_1 [A] KOG0331 ATP-dependent RNA helicase 110 5e-24
SPBC543.06c [A] KOG0340 ATP-dependent RNA helicase 110 6e-24
At1g72730 [J] KOG0327 Translation initiation factor 4F helicase ... 110 6e-24
YOR204w [A] KOG0335 ATP-dependent RNA helicase 110 8e-24
7299061 [A] KOG0335 ATP-dependent RNA helicase 110 8e-24
Hs13514809 [A] KOG0335 ATP-dependent RNA helicase 109 1e-23
7298204 [A] KOG0335 ATP-dependent RNA helicase 109 1e-23
YDL160c [A] KOG0326 ATP-dependent RNA helicase 109 1e-23
Hs13514813 [A] KOG0335 ATP-dependent RNA helicase 108 2e-23
At5g11200 [A] KOG0329 ATP-dependent RNA helicase 108 2e-23
7298459 [A] KOG0333 U5 snRNP-like RNA helicase subunit 108 2e-23
YPL119c [A] KOG0335 ATP-dependent RNA helicase 108 2e-23
SPBP8B7.16c [A] KOG0331 ATP-dependent RNA helicase 108 2e-23
CE09901 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 in... 108 2e-23
7295505 [A] KOG0346 RNA helicase 108 2e-23
Hs4758138 [A] KOG0331 ATP-dependent RNA helicase 108 3e-23
CE28485 [K] KOG4284 DEAD box protein 108 3e-23
7297629 [A] KOG0326 ATP-dependent RNA helicase 108 3e-23
At5g11170 [A] KOG0329 ATP-dependent RNA helicase 107 4e-23
At3g13920 [J] KOG0327 Translation initiation factor 4F helicase ... 107 4e-23
CE28031 [A] KOG0334 RNA helicase 107 5e-23
CE27427 [A] KOG0334 RNA helicase 107 5e-23
7303950 [A] KOG0340 ATP-dependent RNA helicase 107 5e-23
7298989 [A] KOG0336 ATP-dependent RNA helicase 107 7e-23
SPBC12C2.06 [A] KOG0332 ATP-dependent RNA helicase 106 9e-23
CE26887 [A] KOG0333 U5 snRNP-like RNA helicase subunit 106 9e-23
CE24878 [A] KOG0333 U5 snRNP-like RNA helicase subunit 106 9e-23
7299019 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 in... 106 9e-23
7291960_2 [A] KOG0337 ATP-dependent RNA helicase 106 9e-23
CE11402 [A] KOG0334 RNA helicase 106 1e-22
At3g22330 [A] KOG0331 ATP-dependent RNA helicase 106 1e-22
CE25231 [A] KOG0343 RNA Helicase 105 2e-22
At1g54270 [J] KOG0327 Translation initiation factor 4F helicase ... 105 2e-22
7296165 [A] KOG0330 ATP-dependent RNA helicase 105 2e-22
CE06239 [A] KOG0344 ATP-dependent RNA helicase 104 4e-22
At1g51380 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 ... 104 4e-22
At1g20920 [A] KOG0334 RNA helicase 104 4e-22
Hs8922976 [A] KOG0330 ATP-dependent RNA helicase 104 5e-22
CE28369 [A] KOG0335 ATP-dependent RNA helicase 104 5e-22
CE24451 [A] KOG0335 ATP-dependent RNA helicase 104 5e-22
At3g19760 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 ... 104 5e-22
SPCC63.11 [A] KOG0333 U5 snRNP-like RNA helicase subunit 103 6e-22
Hs13775232 [A] KOG0331 ATP-dependent RNA helicase 103 6e-22
ECU09g1640 [A] KOG0326 ATP-dependent RNA helicase 103 6e-22
SPCC1795.11 [A] KOG0335 ATP-dependent RNA helicase 103 8e-22
At1g71370 [A] KOG0345 ATP-dependent RNA helicase 103 8e-22
CE25121 [A] KOG0335 ATP-dependent RNA helicase 103 1e-21
At5g63630 [A] KOG0342 ATP-dependent RNA helicase pitchoune 103 1e-21
At3g22310 [A] KOG0331 ATP-dependent RNA helicase 103 1e-21
YBR237w [A] KOG0334 RNA helicase 102 1e-21
ECU08g1080 [A] KOG0331 ATP-dependent RNA helicase 102 1e-21
At3g09620 [A] KOG0334 RNA helicase 102 1e-21
CE09012 [A] KOG0335 ATP-dependent RNA helicase 102 2e-21
YHR169w [A] KOG0340 ATP-dependent RNA helicase 102 2e-21
SPBC24C6.02 [A] KOG0345 ATP-dependent RNA helicase 102 2e-21
SPAC1006.07 [J] KOG0327 Translation initiation factor 4F helicas... 102 2e-21
CE07736 [A] KOG0335 ATP-dependent RNA helicase 101 3e-21
Hs7662318 [A] KOG0334 RNA helicase 100 5e-21
CE27728 [A] KOG0346 RNA helicase 100 5e-21
At4g00660 [A] KOG0326 ATP-dependent RNA helicase 100 5e-21
SPAC17G6.14c [A] KOG0329 ATP-dependent RNA helicase 100 7e-21
ECU10g0690 [A] KOG0345 ATP-dependent RNA helicase 100 7e-21
Hs4758140 [A] KOG0326 ATP-dependent RNA helicase 100 9e-21
At5g51280 [A] KOG0341 DEAD-box protein abstrakt 100 9e-21
Hs21071032 [A] KOG0341 DEAD-box protein abstrakt 100 1e-20
SPCC10H11.01 [A] KOG0334 RNA helicase 99 1e-20
Hs13129006 [A] KOG0331 ATP-dependent RNA helicase 99 2e-20
CE03025 [A] KOG0329 ATP-dependent RNA helicase 99 2e-20
At1g63250 [A] KOG0342 ATP-dependent RNA helicase pitchoune 99 2e-20
At5g08610 [A] KOG0342 ATP-dependent RNA helicase pitchoune 99 3e-20
Hs13787209 [A] KOG0331 ATP-dependent RNA helicase 98 4e-20
ECU02g1520 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1... 97 1e-19
7302399 [A] KOG0347 RNA helicase 97 1e-19
SPBC776.09 [A] KOG0326 ATP-dependent RNA helicase 96 2e-19
7294824 [K] KOG4284 DEAD box protein 96 2e-19
YGL064c [A] KOG0335 ATP-dependent RNA helicase 96 2e-19
At4g33370 [A] KOG0341 DEAD-box protein abstrakt 95 4e-19
7296891 [A] KOG0341 DEAD-box protein abstrakt 94 5e-19
Hs9966805 [A] KOG0347 RNA helicase 93 1e-18
At2g07750 [A] KOG0342 ATP-dependent RNA helicase pitchoune 93 1e-18
Hs20336298 [A] KOG0348 ATP-dependent RNA helicase 92 2e-18
At5g08620 [A] KOG0342 ATP-dependent RNA helicase pitchoune 92 2e-18
ECU07g1060 [A] KOG0344 ATP-dependent RNA helicase 89 2e-17
YOR046c [A] KOG0332 ATP-dependent RNA helicase 88 4e-17
At4g09730 [A] KOG0331 ATP-dependent RNA helicase 88 4e-17
At3g06980 [A] KOG0331 ATP-dependent RNA helicase 87 1e-16
ECU09g1200 [J] KOG0327 Translation initiation factor 4F helicase... 84 6e-16
At3g53110 [A] KOG0332 ATP-dependent RNA helicase 83 1e-15
CE29052 [A] KOG0335 ATP-dependent RNA helicase 82 2e-15
At1g12770_1 [J] KOG0327 Translation initiation factor 4F helicas... 82 3e-15
At1g71280 [A] KOG0345 ATP-dependent RNA helicase 81 4e-15
At5g19210 [J] KOG0327 Translation initiation factor 4F helicase ... 81 5e-15
Hs9506609 [A] KOG0340 ATP-dependent RNA helicase 77 1e-13
Hs14251212 [K] KOG4284 DEAD box protein 77 1e-13
Hs4826688 [J] KOG0327 Translation initiation factor 4F helicase ... 76 2e-13
Hs20551983 [A] KOG0345 ATP-dependent RNA helicase 76 2e-13
Hs6005743 [A] KOG0332 ATP-dependent RNA helicase 75 2e-13
CE01338 [J] KOG0327 Translation initiation factor 4F helicase su... 74 5e-13
Hs8922886 [A] KOG0332 ATP-dependent RNA helicase 74 9e-13
CE18221 [A] KOG0332 ATP-dependent RNA helicase 74 9e-13
CE18220 [A] KOG0332 ATP-dependent RNA helicase 74 9e-13
CE18219 [A] KOG0332 ATP-dependent RNA helicase 74 9e-13
CE25531 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 in... 71 6e-12
Hs17474878 [A] KOG0333 U5 snRNP-like RNA helicase subunit 70 1e-11
Hs21327697 [A] KOG0332 ATP-dependent RNA helicase 69 2e-11
CE26264 [A] KOG0335 ATP-dependent RNA helicase 67 6e-11
HsM7019399 [A] KOG0332 ATP-dependent RNA helicase 67 8e-11
CE27641 [A] KOG0349 Putative DEAD-box RNA helicase DDX1 64 5e-10
Hs21040373 [A] KOG0329 ATP-dependent RNA helicase 64 7e-10
ECU05g1270 [A] KOG0331 ATP-dependent RNA helicase 64 7e-10
CE29051 [A] KOG0335 ATP-dependent RNA helicase 62 3e-09
Hs4826686 [A] KOG0349 Putative DEAD-box RNA helicase DDX1 60 8e-09
Hs17475661 [J] KOG0327 Translation initiation factor 4F helicase... 60 1e-08
Hs22045464 [A] KOG0343 RNA Helicase 56 1e-07
7290730 [A] KOG0331 ATP-dependent RNA helicase 55 4e-07
7296530 [A] KOG0349 Putative DEAD-box RNA helicase DDX1 54 5e-07
Hs22070384 [A] KOG0342 ATP-dependent RNA helicase pitchoune 52 2e-06
Hs22054507 [A] KOG0342 ATP-dependent RNA helicase pitchoune 52 3e-06
CE27336 [A] KOG0334 RNA helicase 50 8e-06
>YNR038w [A] KOG0350 DEAD-box ATP-dependent RNA helicase
Length = 629
Score = 518 bits (1334), Expect = e-146
Identities = 293/602 (48%), Positives = 380/602 (62%), Gaps = 16/602 (2%)
Query: 1 MFAARFDPTKVTENVLTAE---VTQIKEPTVPQKRKRXXXXXXXXXXXXXXXXXXXXXXX 57
MFA+RFDP+++T +A V VP KR+
Sbjct: 1 MFASRFDPSQLTAPAASAPEGIVGTTPPAIVPLKRQATESDNEEYGSHQDSDESSNSSSE 60
Query: 58 XXXXXXXXXXXXXNKVASVAPTETSQQSVDAKHSSVLNRFQQTLSLQGALSASDKVSSDN 117
+ +S E S+ S HS+VL+RF+QT+SLQ L ASD S
Sbjct: 61 EDEDRMQVDYGASEEDSSEVEEEESKPST---HSTVLSRFKQTVSLQERLGASDIAESKE 117
Query: 118 DVHDEDVSMKDVHSLTPIPQPAKVTNEALKLLDPSTYKSTAWDAATKIHYDSKMVKQFDS 177
D ED + H L IPQP V N + +KST W KI+YD+ ++K F
Sbjct: 118 DEGIEDEAAS-THQLKQIPQPEFVKNPMNLNTNSLQFKSTGWLNTEKIYYDNSLIKPFSD 176
Query: 178 YEGELDARLLKNITSNFSSETFPIQTILFDKVLPLLNSSFKANRKLFTRRVGDILVNAST 237
Y EL+A+LL+NI NFS+ TFPIQ+I+ D +LP+LN + +++ FTRR+GDILVNA+T
Sbjct: 177 YANELEAKLLQNICKNFSTNTFPIQSIILDSILPVLNFTLNVSKRNFTRRIGDILVNAAT 236
Query: 238 GSGKTLAYSVPLVQILRSRTVNKVRAIILVPTKILIHQVYDCLSKLSQGTSLNVSMSKLE 297
GSGKTLAYS+P+VQ L R +N++R II+VPTK+LI+QVY L+KL+QGTSL VS++KLE
Sbjct: 237 GSGKTLAYSIPIVQTLFKRQINRLRCIIIVPTKLLINQVYTTLTKLTQGTSLIVSIAKLE 296
Query: 298 NSLKEEHNKFLYNSPDILIITPGRLVDHLQMESFDLKTLKFLVLDEADRLLNQSFQNWNQ 357
NSLK+EH K PDILI TPGRLVDHL M+S +LK LKFL++DEADRLLNQSFQ W
Sbjct: 297 NSLKDEHKKLSNLEPDILITTPGRLVDHLNMKSINLKNLKFLIIDEADRLLNQSFQGWCP 356
Query: 358 VLFHHLTNDKQDKRPGNVIKMVFSATLTTNAEKLYNLYLHNPKIFLTDSVKLYSIPKKLQ 417
L HL DK D PGNVIKM+FSATLTTN EKL L L+ PK+FL + KLY +P KL
Sbjct: 357 KLMSHLKTDKLDTLPGNVIKMIFSATLTTNTEKLNGLNLYKPKLFLKQTDKLYQLPNKLN 416
Query: 418 ELNVNIPTAKSLFKPLLLLRIIHDIKSSASRNAKILVFVKSNEASIRLESLLHAML---- 473
E N+NIPTAKS++KPL+LL I + + AKIL+FVKSNE+SIRL LL +
Sbjct: 417 EFNINIPTAKSVYKPLILLYSICQFMAHSPIAAKILIFVKSNESSIRLSKLLQLICESRS 476
Query: 474 GSGIIEDEYNM--FLXXXXXXXXXXXXRKLIQEFASSEQKK--SVLISTDIMARGIDINE 529
S ++++ N+ + +K++ F+ + ++LI+TDIM+RGIDIN+
Sbjct: 477 QSSVLKNLQNLAVSINSVNSNNSKAENKKIVANFSHHSESAGITILITTDIMSRGIDIND 536
Query: 530 ITHVINYDLPISSQQYVHRCGRTARANTEGIAINLLVGKGEQKFWSQHIDTDLSRDIDGY 589
IT VINYD P+SSQQYVHR GRTARAN G A NLLVG+GE+ F+ ++ DL RD
Sbjct: 537 ITQVINYDPPMSSQQYVHRVGRTARANELGSAYNLLVGRGERTFFDD-LNKDLDRDGKSV 595
Query: 590 QP 591
QP
Sbjct: 596 QP 597
>SPCC285.03 [A] KOG0350 DEAD-box ATP-dependent RNA helicase
Length = 604
Score = 225 bits (574), Expect = 1e-58
Identities = 174/527 (33%), Positives = 262/527 (49%), Gaps = 106/527 (20%)
Query: 104 QGALSASDKVSSDNDVHDEDVSMK-DVHSLTPIPQPA------------KVTNEALK-LL 149
Q AL S K ++ D+ +DV + H L PIPQP+ +T+ K L
Sbjct: 56 QQALKQSRKEDNERDIEMQDVDAEAQPHDLLPIPQPSVEDFVDSKPHVKNITSVLPKWLA 115
Query: 150 DPSTYKSTAWDAATKIHYDSKMVKQFDSYEGELDARLLKNITSNFSSETFPIQTILFDKV 209
+P T + ++ SK+V++ +NIT F+ + V
Sbjct: 116 EPITVDPNTTVEFSSLNISSKLVERLQK----------QNITRGFAVQA---------AV 156
Query: 210 LPLLNSSFKANRKLFTRRVGDILVNASTGSGKTLAYSVPLVQILRSRTVNKVRAIILVPT 269
LPLL + + +++ GD+ V+A+TGSGKTL+Y +P+VQ L RTV ++R +++VPT
Sbjct: 157 LPLLLQDGR-HGPMYSYG-GDVCVSAATGSGKTLSYVIPIVQCLSHRTVPRLRCVVIVPT 214
Query: 270 KILIHQVYDCLSKLSQGTSLNVSMSKLENSLKEEHNKFLYNSP------DILIITPGRLV 323
+ L QV G L V + SL+ H + N D+L+ TPGRLV
Sbjct: 215 RELTVQVAKTFEYYMSGAGLQVCAWTGQKSLR--HETYQLNGDENECRIDVLVSTPGRLV 272
Query: 324 DHLQM-ESFDLKTLKFLVLDEADRLLNQSFQNWNQVLFHHLTNDKQDKRPGNVI------ 376
DH++ ESF L+ L+++V+DEADRLL+QSFQ+W + +++ K + N++
Sbjct: 273 DHIRNDESFSLQHLRYMVIDEADRLLDQSFQDWVDTVMMEISHPKCLQNKSNILDLDQNI 332
Query: 377 ---------------------KMVFSATLTTNAEKLYNLYLHNPKIFLT----------- 404
K+VFSATLT + K+ +L LHNP++ L
Sbjct: 333 SPTFLPDIDTLLPYRLPSPLQKLVFSATLTRDPSKIASLKLHNPRLVLVQNKDMEVDDGG 392
Query: 405 ---DSVKLYSIPKKLQELNVNIPTAKSLFKPLLLLRIIHDIKSSASRN-AKILVFVKSNE 460
D ++S+P LQE +V++ S KP+LL +IH S+N IL FVKSNE
Sbjct: 393 EIEDDAIVFSVPPTLQEYHVSV----SSEKPILLYHLIH------SKNLTNILCFVKSNE 442
Query: 461 ASIRLESLLHAMLGSGIIEDEYNMFLX--XXXXXXXXXXXRKLIQEFASSEQKKSVLIST 518
A+ RL LL +I + N +K+I FA+ + ++L+ +
Sbjct: 443 AAARLHRLLE------LIHESLNQSFSCGLFTSSLSRDERKKIISRFATGD--LNLLVCS 494
Query: 519 DIMARGIDINEITHVINYDLPISSQQYVHRCGRTARANTEGIAINLL 565
D+MARGID+ +VINYD P+S + YVHR GRTARA EG A L+
Sbjct: 495 DLMARGIDVANTQNVINYDPPLSVRSYVHRIGRTARAGREGFAWTLV 541
>7294064 [A] KOG0350 DEAD-box ATP-dependent RNA helicase
Length = 687
Score = 177 bits (449), Expect = 4e-44
Identities = 132/415 (31%), Positives = 207/415 (49%), Gaps = 71/415 (17%)
Query: 199 FPIQTILFDKVLPLLNSSFKANRKLFTRRVGDILVNASTGSGKTLAYSVPLVQILRSRTV 258
FP+Q +V+P + +A+ K R DI V+A TGSGKTLA+++P+VQ+L R
Sbjct: 161 FPVQK----QVIPWI---LEAHAKPPPFRPRDICVSAPTGSGKTLAFAIPIVQLLSQRVD 213
Query: 259 NKVRAIILVPTKILIHQVYDCLSKLSQGTSLNVSMSKLENSLKEEHNKFL-------YNS 311
KVRA++++P L QVY +S+L T L V + ++ L++E K + Y+
Sbjct: 214 CKVRALVVLPVAELALQVYRVISELCSKTELEVCLLSKQHKLEDEQEKLVEQYKGKYYSK 273
Query: 312 PDILIITPGRLVDHLQ-MESFDLKTLKFLVLDEADRLLNQSFQNWNQVLFHHLTNDKQDK 370
DI++ TPGRLVDHL + F LK+LKFLV+DEADR+++ FQNW L H+
Sbjct: 274 ADIVVTTPGRLVDHLHATKGFCLKSLKFLVIDEADRIMDAVFQNWLYHLDSHVKETTDQL 333
Query: 371 RPGNVI----------------KMVFSATLTTNAEKLYNLYLHNPKIF------------ 402
G K++FSATL+ + EKL +L L P++F
Sbjct: 334 LAGTQAPLCYAELQASFGKQPHKLLFSATLSQDPEKLQDLRLFQPRLFATVLTMPVLKDA 393
Query: 403 ---------LTDS---VKLYSIPKKLQELNVNIPTAKSLFKPLLLLRIIHDIKSSASRNA 450
LTD V Y+ P +L E + KPL + ++ K
Sbjct: 394 TEEGADTEALTDPGQFVGRYTTPAELTE---QYCVTELRLKPLTVFALVEKYKWK----- 445
Query: 451 KILVFVKSNEASIRLESLLHAMLGSGIIEDEYNMFLXXXXXXXXXXXXRKLIQEFASSEQ 510
+ L F S++ + RL +L ++ +Y+ + + +++FA+
Sbjct: 446 RFLCFTNSSDQATRLTFVLK------VLFQKYSTKVSELSGNLSAKVRNERLRDFAAG-- 497
Query: 511 KKSVLISTDIMARGIDINEITHVINYDLPISSQQYVHRCGRTARANTEGIAINLL 565
K + LI +D +ARGID+ ++ V++Y+ P Y+HR GRTARA +G A+ +L
Sbjct: 498 KINGLICSDALARGIDVADVDVVLSYETPRHITTYIHRVGRTARAGRKGTAVTVL 552
>At4g15850 [A] KOG0350 DEAD-box ATP-dependent RNA helicase
Length = 474
Score = 170 bits (430), Expect = 7e-42
Identities = 123/396 (31%), Positives = 194/396 (48%), Gaps = 71/396 (17%)
Query: 230 DILVNASTGSGKTLAYSVPLVQILRSRTVNKVRAIILVPTKILIHQVYDCLSKLSQGTSL 289
DI VN+ TGSGKTL+Y++P+VQ+L SR V +RA++++PT+ L QV D ++ L
Sbjct: 26 DICVNSPTGSGKTLSYALPIVQLLASRPVRCLRALVVLPTRDLALQVKDVFDAIAPAVGL 85
Query: 290 NVSMSKLENSLKEEHNKF--------------------LYNSPDILIITPGRLVDHL-QM 328
+V + ++S+ E ++ L ++ DIL+ TPGRL+DH+
Sbjct: 86 SVGSAVGQSSIAGEISQLIKTPKLDAGICYDPDDLSQNLESAVDILVATPGRLMDHINNT 145
Query: 329 ESFDLKTLKFLVLDEADRLLNQSFQNWNQVLFHHLTNDKQD------------------- 369
+ F L+ L++LV+DE DRLL +++Q+W + LT D
Sbjct: 146 KGFTLEHLRYLVVDETDRLLREAYQSWLPTVL-QLTQTSDDSLFPSFTPFVPSAFGSLQT 204
Query: 370 ------------KRPGNVIKMVFSATLTTNAEKLYNLYLHNPKIFLTDSVKLYSIPKKLQ 417
K ++KMV SATLT + KL L LH+P +F+T Y +P+KL+
Sbjct: 205 VRRQSVERGFKGKPYPRLVKMVLSATLTQDPSKLIQLDLHHP-LFMTTGGSRYRLPEKLE 263
Query: 418 ELNVNIPTAKSLFKPLLLLRIIHDIKSSASRNAKILVFVKSNEASIRLESLLHAMLGSGI 477
L + T KP+ L+ ++ + K ++F S E + RL LL+ I
Sbjct: 264 CLRLICETG---MKPVYLVALL-----KSWEGEKCIIFTSSVETTRRLCKLLNFFGDPKI 315
Query: 478 IEDEYNMFLXXXXXXXXXXXXRKLIQEFASSEQKKSVLISTDIMARGIDINEITHVINYD 537
EY+ L RK VL+++D + RG+D+ +T+VINYD
Sbjct: 316 KAKEYSGGLNQSLRSKELKAFRK---------GDIQVLVASDALTRGMDVKGVTNVINYD 366
Query: 538 LPISSQQYVHRCGRTARANTEGIAINLLVGKGEQKF 573
+P ++ ++HR GRTARA G LL ++F
Sbjct: 367 MPPFAKTFIHRAGRTARAGQAGRCFTLLSNHEVRRF 402
>YLL008w [A] KOG0338 ATP-dependent RNA helicase
Length = 752
Score = 148 bits (374), Expect = 2e-35
Identities = 113/348 (32%), Positives = 182/348 (51%), Gaps = 35/348 (10%)
Query: 230 DILVNASTGSGKTLAYSVPLVQIL--RSRTVNKVRAIILVPTKILIHQVYDC---LSKLS 284
DI+ A TGSGKT A+ +P+++ L + + R I+L+PT+ L QV D +++
Sbjct: 270 DIIAGAVTGSGKTAAFMIPIIERLLYKPAKIASTRVIVLLPTRELAIQVADVGKQIARFV 329
Query: 285 QGTSLNVSMSKLENSLKEEHNKFLYNSPDILIITPGRLVDHLQME-SFDLKTLKFLVLDE 343
G + +++ L +E+ L + PDI+I TPGR +DH++ SF++ +++ LV+DE
Sbjct: 330 SGITFGLAVGGLNLRQQEQ---MLKSRPDIVIATPGRFIDHIRNSASFNVDSVEILVMDE 386
Query: 344 ADRLLNQSFQNWNQVLFHHLTNDKQDKRPGNVIKMVFSATLTTNAEKLYNLYLHNPKIFL 403
ADR+L + FQ+ N+ P N ++FSAT+ + + L +L L P +
Sbjct: 387 ADRMLEEGFQDE--------LNEIMGLLPSNRQNLLFSATMNSKIKSLVSLSLKKPVRIM 438
Query: 404 TDSVKLYSIPKKLQELNVNIPTAKSLFKPLLLLRIIHDIKSSASRNAKILVFVKSNEASI 463
D K KL + V I L KP LL +I + + + +I+VFV E +
Sbjct: 439 IDPPK--KAATKLTQEFVRIRKRDHL-KPALLFNLIRKLDPTGQK--RIVVFVARKETAH 493
Query: 464 RLESLLHAMLGSGIIEDEYNMFLXXXXXXXXXXXXRKLIQEFASSEQKKSVLISTDIMAR 523
RL ++ +LG + E ++ + +F + E VLI TD+ +R
Sbjct: 494 RLRIIM-GLLGMSVGELHGSLTQEQRLDS---------VNKFKNLEVP--VLICTDLASR 541
Query: 524 GIDINEITHVINYDLPISSQQYVHRCGRTARANTEGIAINLLVGKGEQ 571
G+DI +I VINYD+P S + Y+HR GRTARA EG ++ VG+ Q
Sbjct: 542 GLDIPKIEVVINYDMPKSYEIYLHRVGRTARAGREGRSVT-FVGESSQ 588
>SPAC30D11.03 [A] KOG0338 ATP-dependent RNA helicase
Length = 754
Score = 147 bits (371), Expect = 5e-35
Identities = 128/514 (24%), Positives = 237/514 (45%), Gaps = 77/514 (14%)
Query: 82 SQQSVDAKHSSVLNRFQQTLSLQGALSASDKVSSDNDVHDEDVSMKDVHSLTPIPQPAKV 141
S++ + ++ + L++ G + + + D DE S ++ P+P A +
Sbjct: 155 SEEELQEPEQENIDSDDEDLAIDGFGAGAIAENEDESSQDESESEEEDDITEPVPSFANI 214
Query: 142 TNEALKLLDPSTYKSTAWDAATKIHYDSKMVKQFDSY--EGELDARLLKNITSNFSSET- 198
+ + + S + ++ D + + + +++ EG+ + ++ S+F S
Sbjct: 215 STQ--------DFNSDSAAGSSDSEEDEEEIAKKNAFFAEGDKEKSMMTTTHSSFQSMNL 266
Query: 199 ------------FPIQTILFDKVLPLLNSSFKANRKLFTRRVGDILVNASTGSGKTLAYS 246
F + T + DK +PL DI+ A TGSGKT A+
Sbjct: 267 SRPILKGLSNLGFEVPTQIQDKTIPLALLG------------KDIVGAAVTGSGKTAAFI 314
Query: 247 VPLVQIL--RSRTVNKVRAIILVPTKILIHQVYDCLSKLSQGTSLNVSMSKLENSLKEEH 304
VP+++ L R + V R +IL PT+ L Q + +K++ T + V + SLK +
Sbjct: 315 VPILERLLYRPKKVPTTRVLILCPTRELAMQCHSVATKIASFTDIMVCLCIGGLSLKLQE 374
Query: 305 NKFLYNSPDILIITPGRLVDHLQ-MESFDLKTLKFLVLDEADRLLNQSFQNWNQVLFHHL 363
+ L PDI+I TPGR +DH++ + F ++ ++ +V+DEADR+L F + +
Sbjct: 375 QE-LRKRPDIVIATPGRFIDHMRNSQGFTVENIEIMVMDEADRMLEDGFADELNEIIQAC 433
Query: 364 TNDKQDKRPGNVIKMVFSATLTTNAEKLYNLYLHNPKIFLTDSVKLYSIPKKLQELNVNI 423
+Q M+FSAT+T + L L L+ P D+ K + K L + V +
Sbjct: 434 PKSRQT--------MLFSATMTDKVDDLIRLSLNRPVRVFVDNKK--TTAKLLTQEFVRV 483
Query: 424 PTAKSLFKPLLLLRIIHDIKSSASRNAKILVFVKSNEASIRLESL-----LHAMLGSGII 478
+ L +P +L+ + ++ + + ++F +S + ++ + L+A G +
Sbjct: 484 RPQRELLRPAMLIYLCKELF-----HRRTIIFFRSKAFAHKMRVIFGLLSLNATEIHGSL 538
Query: 479 EDEYNMFLXXXXXXXXXXXXRKLIQEFASSEQKKSVLISTDIMARGIDINEITHVINYDL 538
E + + +++F K + L++TD+ +RGIDI I VINY+
Sbjct: 539 SQEQRV---------------RALEDFRDG--KCNYLLATDVASRGIDIKGIEVVINYEA 581
Query: 539 PISSQQYVHRCGRTARANTEGIAINLLVGKGEQK 572
P + + Y+HR GRTARA G AI L G+G++K
Sbjct: 582 PATHEVYLHRVGRTARAGRSGRAIT-LAGEGDRK 614
>Hs20149629 [A] KOG0330 ATP-dependent RNA helicase
Length = 455
Score = 147 bits (370), Expect = 6e-35
Identities = 107/362 (29%), Positives = 180/362 (49%), Gaps = 37/362 (10%)
Query: 230 DILVNASTGSGKTLAYSVPLVQILRSRTVNKVRAIILVPTKILIHQVYDCLSKLSQGTSL 289
DI+ A TGSGKT A+++P++ L T ++ A++L PT+ L Q+ + L G+S+
Sbjct: 63 DIIGLAETGSGKTGAFALPILNALLE-TPQRLFALVLTPTRELAFQISEQFEAL--GSSI 119
Query: 290 NVSMSKLENSLKEEHNKF-LYNSPDILIITPGRLVDHLQ-MESFDLKTLKFLVLDEADRL 347
V + + + L P I+I TPGRL+DHL+ + F+L+ LK+LV+DEADR+
Sbjct: 120 GVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRI 179
Query: 348 LNQSFQNWNQVLFHHLTNDKQDKRPGNVIKMVFSATLTTNAEKLYNLYLHNPKIFLTDSV 407
LN F+ + + D++ +FSAT+T +KL L NP S
Sbjct: 180 LNMDFETEVDKILKVIPRDRKT--------FLFSATMTKKVQKLQRAALKNPVKCAVSSK 231
Query: 408 KLYSIPKKLQELNVNIPTAKSLFKPLLLLRIIHDIKSSASRNAKILVFVKSNEASIRLES 467
Y +KLQ+ + IP S FK L+ I++++ ++ ++F + + R
Sbjct: 232 --YQTVEKLQQYYIFIP---SKFKDTYLVYILNELAGNS-----FMIFCSTCNNTQRTAL 281
Query: 468 LLHAMLGSGIIEDEYNMFLXXXXXXXXXXXXRKLIQEFASSEQKKSVLISTDIMARGIDI 527
LL N+ ++L + +S+L++TD+ +RG+DI
Sbjct: 282 LLR------------NLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLATDVASRGLDI 329
Query: 528 NEITHVINYDLPISSQQYVHRCGRTARANTEGIAINLLVGKGEQKFWSQHIDTDLSRDID 587
+ V+N+D+P S+ Y+HR GRTARA G AI + + F Q I+ + + +
Sbjct: 330 PHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELF--QRIEHLIGKKLP 387
Query: 588 GY 589
G+
Sbjct: 388 GF 389
>7304081 [A] KOG0338 ATP-dependent RNA helicase
Length = 782
Score = 147 bits (370), Expect = 6e-35
Identities = 110/349 (31%), Positives = 189/349 (53%), Gaps = 37/349 (10%)
Query: 230 DILVNASTGSGKTLAYSVPLVQILRSRTVNK---VRAIILVPTKILIHQVYDCLSKLSQG 286
DI A+TG+GKT AY +P ++ L R +N R ++LVPT+ L QVY +L Q
Sbjct: 196 DICGCAATGTGKTAAYMLPTLERLLYRPLNNKAITRVLVLVPTRELGAQVYQVTKQLCQF 255
Query: 287 TSLNVSMSKLENSLKEEHNKFLYNSPDILIITPGRLVDHLQ-MESFDLKTLKFLVLDEAD 345
T+++V ++ +K + L +PDI+I TPGRL+DH++ SF L +++ L+LDEAD
Sbjct: 256 TTIDVGLAIGGLDVKAQE-AVLRQNPDIVIATPGRLIDHIKNTPSFTLDSIEVLILDEAD 314
Query: 346 RLLNQSFQNWNQVLFHHLTNDKQDKRPGNVIKMVFSATLTTNAEKLYNLYLHNP-KIFLT 404
R+L++ F + + + +Q M+FSAT++ + L + L P K+F+
Sbjct: 315 RMLDEYFAEQMKEIINSCCKTRQT--------MLFSATMSEQVKDLAAVSLDKPIKVFVN 366
Query: 405 DSVKL-YSIPKKLQELNVNIPTAKSLFKPLLLLRIIHDIKSSASRNAKILVFVKSNEASI 463
++ ++ +++ ++ + + + L+ R HD +VFV++ + +
Sbjct: 367 NNQQVAFNLRQEFIRIREDKEGDREPILASLICRTFHD---------HCMVFVQTKKQAH 417
Query: 464 RLESLLHAMLGSGIIEDEYNMFLXXXXXXXXXXXXRKLIQEFASSEQKKSVLISTDIMAR 523
RL LL +LG E N+ ++L E++ VLI+TD+ AR
Sbjct: 418 RLHILL-GLLGVRAGELHGNL-----------TQQQRLESLKKFKEEQIDVLIATDVAAR 465
Query: 524 GIDINEITHVINYDLPISSQQYVHRCGRTARANTEGIAINLLVGKGEQK 572
G+DI + VIN+ +PI+++ Y+HR GRTARA GI+++ L G+ E+K
Sbjct: 466 GLDIVGVKTVINFVMPITTEHYIHRVGRTARAGRAGISVS-LAGEKERK 513
>Hs19743937 [A] KOG0338 ATP-dependent RNA helicase
Length = 796
Score = 146 bits (368), Expect = 1e-34
Identities = 129/474 (27%), Positives = 227/474 (47%), Gaps = 60/474 (12%)
Query: 104 QGALSASDKVSSDNDVHDEDVSMKDVHSLTPIPQPAKVTNEALKLLDPSTYKSTAWDAAT 163
Q L +D+ S+++ + D S D + LT + LK+ D K +A
Sbjct: 155 QEDLQENDEEGSEDEASETDYSSADENILTKA--------DTLKVKDRKKKKKKGQEAGG 206
Query: 164 KIHYDSKMVKQFDSYEGELDARLLKNITSNFSSETFPIQTILFDKVLPLLNSSFKANRKL 223
S+ + + L LLK IT+ + PIQ + LL
Sbjct: 207 FFEDASQYDENLSFQDMNLSRPLLKAITAMGFKQPTPIQKACIP--VGLLGK-------- 256
Query: 224 FTRRVGDILVNASTGSGKTLAYSVPLVQ--ILRSRTVNKVRAIILVPTKILIHQVYDCLS 281
DI A+TG+GKT A+++P+++ I + R R ++LVPT+ L QV+
Sbjct: 257 ------DICACAATGTGKTAAFALPVLERLIYKPRQAPVTRVLVLVPTRELGIQVHSVTR 310
Query: 282 KLSQGTSLNVSMSKLENSLKEEHNKFLYNSPDILIITPGRLVDHLQ-MESFDLKTLKFLV 340
+L+Q ++ ++ +K + L +PDILI TPGRL+DHL SF L +++ L+
Sbjct: 311 QLAQFCNITTCLAVGGLDVKSQEAA-LRAAPDILIATPGRLIDHLHNCPSFHLSSIEVLI 369
Query: 341 LDEADRLLNQSFQNWNQVLFHHLTNDKQDKRPGNVIKMVFSATLTTNAEKLYNLYLHNP- 399
LDEADR+L++ F+ + + ++ +Q M+FSAT+T + L ++ L NP
Sbjct: 370 LDEADRMLDEYFEEQMKEIIRMCSHHRQT--------MLFSATMTDEVKDLASVSLKNPV 421
Query: 400 KIFLTDSVKLYS-IPKKLQELNVNIPTAKSLFKPLLLLRIIHDIKSSASRNAKILVFVKS 458
+IF+ + + + ++ + N + LL R D +++F ++
Sbjct: 422 RIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAALLTRTFTD---------HVMLFTQT 472
Query: 459 NEASIRLESLLHAMLGSGIIEDEYNMFLXXXXXXXXXXXXRKLIQEFASSEQKKSVLIST 518
+ + R+ LL ++G + E N+ ++L +++ +L++T
Sbjct: 473 KKQAHRMHILL-GLMGLQVGELHGNL-----------SQTQRLEALRRFKDEQIDILVAT 520
Query: 519 DIMARGIDINEITHVINYDLPISSQQYVHRCGRTARANTEGIAINLLVGKGEQK 572
D+ ARG+DI + VIN+ +P + + YVHR GRTARA G +++ LVG+ E+K
Sbjct: 521 DVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVS-LVGEDERK 573
>CE00456 [A] KOG0350 DEAD-box ATP-dependent RNA helicase
Length = 696
Score = 144 bits (364), Expect = 3e-34
Identities = 136/531 (25%), Positives = 250/531 (46%), Gaps = 59/531 (11%)
Query: 110 SDKVSSDNDVHDEDVSMKDVHSLTPIPQPAKVTN-EALKLLDPSTYKSTAWDAATKIHYD 168
++ V +V E+ + + + ++ N EALK+ +T + A D
Sbjct: 156 TEDVEDSGEVEIEETAQNGEREIFKVLGKQEMKNLEALKVTSSWVQNATTFSATI----D 211
Query: 169 SKMVKQFDSYEGELDARLLKNITSNFSSET-FPIQTILFDKVLPLLNSSFKANRKLFTRR 227
S ++ E L +++T + T FP+Q VLP L ++ L R
Sbjct: 212 SSTSQKLSQIE------LPEHLTVPSAISTWFPVQYA----VLPSLFFEIRSPPPLRPR- 260
Query: 228 VGDILVNASTGSGKTLAYSVPLVQILRSRTVNKVRAIILVPTKILIHQVYDCLSKLSQ-- 285
D+ + A TGSGKT+ Y +P++ + S+ ++A+ILVP + L+ Q+ D + +
Sbjct: 261 --DVAIAAPTGSGKTICYVLPVLAAVGSKPSKILQAVILVPVQTLVAQIVDEFKRWNDES 318
Query: 286 GTSLNVSMSKLENSLKEEHNKFLYNSPDILIITPGRLVDHLQME---SFDLKTLKFLVLD 342
G + VS+S N ++E + + P++++ TP RLV HL + DL L+FL++D
Sbjct: 319 GVAKVVSLSGA-NDFEKEARQLASDPPNVIVATPARLVQHLTSKIPPPIDLSKLRFLIVD 377
Query: 343 EADRLLNQSFQNWNQVLFHHLTNDKQDKRPGNVI-------KMVFSATLTTNAEKLYNLY 395
EADR+ + W ++ ++ ++I K+V SATL+ + E+L+
Sbjct: 378 EADRMGKLMREEWLDLVEFLCGGMERVACLKDIIRQRRAPQKIVLSATLSKDVEELHLWN 437
Query: 396 LHNPKIFLTDSVKLYSIPKKLQELN-----VNIPTAKS--------LFKPLLLLRIIHDI 442
L P++F +V + I + +++ + +P++ S F PL + + I
Sbjct: 438 LFKPRLFSATAVSVKDITSGIPQVDHVSGRLALPSSISHRLVVTDPKFHPLAVYQQI--- 494
Query: 443 KSSASRNAKILVFVKSNEASIRLESLLHAMLGSGIIEDEYNMFLXXXXXXXXXXXXRKLI 502
+ ++ + L+FV +S RL +L + D + L K++
Sbjct: 495 --TRNKFNRTLIFVNEVSSSNRLAHVLKELCKDQFEVDYFTAQLFGKRRY-------KML 545
Query: 503 QEFASSEQKKSVLISTDIMARGIDINEITHVINYDLPISSQQYVHRCGRTARANTEGIAI 562
++F +E + VLI +D++ARG D+N++ VINY+LP + +VHR GRT RA +G I
Sbjct: 546 EKFNKNENR--VLICSDVLARGTDLNKVDCVINYNLPADDKLFVHRAGRTGRAGQDGYVI 603
Query: 563 NLLVGKGEQKFWSQHIDTDLSRDIDGYQPSAYLDEEKLSELFSIEDTLKDT 613
++ + ++ F T+L D Q Y+ E+ + ++LK T
Sbjct: 604 SVGDKESKRLFVKMLKVTNLWGDTVEEQMEEYIFEKDMDRYSKALESLKAT 654
>7298752 [A] KOG0330 ATP-dependent RNA helicase
Length = 507
Score = 142 bits (357), Expect = 2e-33
Identities = 104/343 (30%), Positives = 176/343 (50%), Gaps = 45/343 (13%)
Query: 230 DILVNASTGSGKTLAYSVPLVQILRSRTVNKVRAIILVPTKILIHQVYDCLSKLSQGTSL 289
D++ A TGSGKT A+++P++ L + A++L PT+ L Q+ + L G +
Sbjct: 100 DVIGLAETGSGKTGAFALPILHALLENP-QRYFALVLTPTRELAFQIGEQFEALGSGIGI 158
Query: 290 NV-----SMSKLENSLKEEHNKFLYNSPDILIITPGRLVDHLQ-MESFDLKTLKFLVLDE 343
M + L+ L P I+I TPGRLVDHL+ M+ F+LK +K+LV+DE
Sbjct: 159 KCCVVVGGMDMVAQGLQ------LAKKPHIIIATPGRLVDHLENMKGFNLKAIKYLVMDE 212
Query: 344 ADRLLNQSFQNWNQVLFHHLTNDKQDKRPGNVIKMVFSATLTTNAEKLYNLYLHNP-KIF 402
ADR+LN F+ + L +++ +FSAT+T +KL L +P K+
Sbjct: 213 ADRILNMDFEVELDKILKVLPRERRT--------FLFSATMTKKVKKLQRASLKDPVKVE 264
Query: 403 LTDSVKLYSIPKKLQELNVNIPTAKSLFKPLLLLRIIHDIKSSASRNAKILVFVKSNEAS 462
+++ Y ++LQ+ + IP +K + L+ I++++ ++ ++F + +
Sbjct: 265 VSNK---YQTVEQLQQSYLFIPVK---YKDVYLVHILNELAGNS-----FMIFCSTCNNT 313
Query: 463 IRLESLLHAMLGSGIIEDEYNMFLXXXXXXXXXXXXRKLIQEFASSEQKKSVLISTDIMA 522
++ +L A LG I M ++L + +S+LISTD+ +
Sbjct: 314 VKTALMLRA-LGLAAIPLHGQM-----------SQNKRLAALNKFKAKNRSILISTDVAS 361
Query: 523 RGIDINEITHVINYDLPISSQQYVHRCGRTARANTEGIAINLL 565
RG+DI + V+N+D+P S+ Y+HR GRTARA G AI L+
Sbjct: 362 RGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITLV 404
>7293348 [A] KOG0348 ATP-dependent RNA helicase
Length = 975
Score = 139 bits (350), Expect = 1e-32
Identities = 115/395 (29%), Positives = 184/395 (46%), Gaps = 62/395 (15%)
Query: 230 DILVNASTGSGKTLAYSVPLVQIL-----RSRTVNKVRAIILVPTKILIHQVYDCLSKLS 284
D+LV + TGSGKTLAY++PLV++L R + + V A+++VPT+ L+ Q Y+ + KL
Sbjct: 367 DVLVRSQTGSGKTLAYALPLVELLQKQQPRIQRKDGVLALVIVPTRELVMQTYELIQKLV 426
Query: 285 QGTSLNVSMSKLENSLKEEHNKFLYNSPDILIITPGRLVDH-LQMESFDLKTLKFLVLDE 343
+ + V S L ++ L +ILI TPGRLVDH L SF L L+FL+LDE
Sbjct: 427 KPYTWIVPGSLLGGESRKSEKARLRKGINILIGTPGRLVDHLLHTASFKLTKLQFLILDE 486
Query: 344 ADRLLNQSFQNWNQVLFHHLTNDK---QDKRPGNVIKMVFSATLTTNAEKLYNLYLHNPK 400
ADRLL ++ + L + + +DK + +M+ SATLT+ ++L L L NP
Sbjct: 487 ADRLLELGYERDVKQLVEAIDKQRAECEDKELPQLQRMLLSATLTSQVQQLAGLTLKNPL 546
Query: 401 I-----------------------------------FLTDSVKLYSIPKKLQELNVNIPT 425
+ D + SIP+ LQ V +P
Sbjct: 547 YIDNSDEAASAALKSKDGYQKETIEALLEVDDGLGEYQEDVTGVLSIPENLQLSYVVVPP 606
Query: 426 AKSLFKPLLLLRIIHDIKSSASRNAKILVFVKSNEASIRLESLLHAMLGSGIIEDEYNMF 485
L + L ++ ++ + K +VF+ + E +L+ L ++++E
Sbjct: 607 KLRL---VALSSLLAKEVDASPKQFKAIVFMSTTEMVNFHHDMLNEALTRRVLDEEDEQE 663
Query: 486 LXXXXXXXXXXXXR-----KLIQEFASSEQK----------KSVLISTDIMARGIDINEI 530
+ KL +E++ VL++TD++ RGID+ +I
Sbjct: 664 KGDSDDDGDIPLLQGLRFFKLHGSMTQTERQGVFRGFRDCASCVLLATDVVGRGIDVPDI 723
Query: 531 THVINYDLPISSQQYVHRCGRTARANTEGIAINLL 565
V+ Y P ++ +VHR GRTARA +G A+ L
Sbjct: 724 KLVVQYTPPQTTADFVHRVGRTARAGRKGRAVLFL 758
>SPBC17D1.06 [A] KOG0331 ATP-dependent RNA helicase
Length = 578
Score = 138 bits (348), Expect = 2e-32
Identities = 106/335 (31%), Positives = 175/335 (51%), Gaps = 23/335 (6%)
Query: 230 DILVNASTGSGKTLAYSVPLVQILRSRTVNKV--RAIILVPTKILIHQVYDCLSKLSQGT 287
D++ A TGSGKT+A+ +P +Q L + NK R +++ PT+ L Q Y+ L+ L QGT
Sbjct: 204 DVVGIAETGSGKTVAFGIPALQYLNGLSDNKSVPRVLVVSPTRELAIQTYENLNSLIQGT 263
Query: 288 SLNVSMSKLENSLKEEHNKFLYNSPDILIITPGRLVDHLQMESFDLKTLKFLVLDEADRL 347
+L ++ + K E + N+ ++I TPGRL+D + S D + +LVLDEADR+
Sbjct: 264 NLK-AVVVYGGAPKSEQARAAKNA-SVIIGTPGRLLDLINDGSIDCSQVGYLVLDEADRM 321
Query: 348 LNQSFQNWNQVLFHHLTNDKQDKRPGNVIKMVFSATLTTNAEKLYNLYLHNPKIFLTDSV 407
L+ F+ Q + + +++ R G+ + FSAT + L +L +P S
Sbjct: 322 LDTGFE---QDIRNIISHTPDPTRNGSRQTVFFSATWPESVRALAATFLKDPVKITIGSD 378
Query: 408 KLYSIPKKLQELNVNIPTAKSLFKPLLLLRIIHDIKSSASRNAKILVFVKSNEASIRLES 467
+L + Q + + + +S K +L ++ SS ++ KIL+FV + + R+E
Sbjct: 379 ELAASQNITQIVEI-LDDPRS--KERMLDNLLRKHLSSGGKDDKILIFVLYKKEAARVE- 434
Query: 468 LLHAMLGSGIIEDEYNMFLXXXXXXXXXXXXRKLIQEFASSEQKKSVLISTDIMARGIDI 527
G + +YN+ + + +F S K VL++TD+ ARG+DI
Sbjct: 435 --------GTLARKYNVV--GIHGDMSQGARLQALNDFKSG--KCPVLVATDVAARGLDI 482
Query: 528 NEITHVINYDLPISSQQYVHRCGRTARANTEGIAI 562
++ VIN P++ + YVHR GRT RANT+G AI
Sbjct: 483 PKVQLVINVTFPLTIEDYVHRIGRTGRANTKGTAI 517
>CE27030 [A] KOG0338 ATP-dependent RNA helicase
Length = 763
Score = 138 bits (347), Expect = 3e-32
Identities = 112/410 (27%), Positives = 205/410 (49%), Gaps = 58/410 (14%)
Query: 230 DILVNASTGSGKTLAYSVPLVQ--ILRSRTVNKVRAIILVPTKILIHQVYDCLSKLSQGT 287
DI A+TG+GKT A+ +P+++ I R + + R ++LVPT+ L QV+ KLS
Sbjct: 187 DICACAATGTGKTAAFVLPILERMIYRPKGASCTRVLVLVPTRELAIQVFQVFRKLSTFI 246
Query: 288 SLNVSMSKLENSLKEEHNKFLYNSPDILIITPGRLVDHLQME-SFDLKTLKF-------- 338
L V + LK + L + PD+++ TPGRL+DHL SF+L ++
Sbjct: 247 QLEVCLCAGGLDLKAQEAA-LRSGPDVVVATPGRLIDHLHNSPSFNLSNIEVFFKTPNIP 305
Query: 339 ----------------LVLDEADRLLNQSFQNWNQVLFHHLTNDKQDKRPGNVIKMVFSA 382
LVLDEADR+L ++F++ L ++Q ++FSA
Sbjct: 306 PKKNSRKICKIPNFQVLVLDEADRMLEEAFRDQMNELIRLCAQNRQT--------LLFSA 357
Query: 383 TLTTNAEKLYNLYLHNP-KIFLTDSVKLYSIPKKLQELNVNIPTAKSLFKPLLLLRIIHD 441
T+T ++L ++ L P KIF+ ++ KL++ + I + + ++ ++
Sbjct: 358 TMTEEIDELASMSLQKPVKIFINENT---DTALKLRQEFIRIRAGRETDREAMVAALV-- 412
Query: 442 IKSSASRNAKILVFVKSNEASIRLESLLHAMLGSGIIEDEYNMFLXXXXXXXXXXXXRKL 501
+ + +VFV++ + R++ LL +LG + + + ++ +
Sbjct: 413 ---TRTFQTNTIVFVRTKKDCQRMQILL-GLLGIKVGQMQSSL---------TQGQRIES 459
Query: 502 IQEFASSEQKKSVLISTDIMARGIDINEITHVINYDLPISSQQYVHRCGRTARANTEGIA 561
+ +F +E VL+STD+ +RG+DI + VIN ++P S +QY+HR GRTARA G +
Sbjct: 460 LSKFKKAEI--DVLVSTDLASRGLDIEGVQTVINMNMPKSIKQYIHRVGRTARAGKAGRS 517
Query: 562 INLLVGKGEQKFWSQHIDTDLSRDIDGYQPSAYLDEEKLSELFSIEDTLK 611
I+ LVG+ E+K + ++++ R + + + E + +E+T++
Sbjct: 518 IS-LVGEDERKLLKEIVNSNADRTLKQRLVAPEVVEAYRRRIDELEETIQ 566
>CE26853 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 544
Score = 138 bits (347), Expect = 3e-32
Identities = 120/403 (29%), Positives = 192/403 (46%), Gaps = 53/403 (13%)
Query: 175 FDSYEGELDARLLKNITSNFSSETFPIQTILFDKVLPLLNSSFKANRKLFTRRVGDILVN 234
F S EG+++A LLK + + IQ D PLL D+L +
Sbjct: 68 FASLEGKVNANLLKAVQGLGFTTMTEIQAKSID---PLLEGK-------------DVLAS 111
Query: 235 ASTGSGKTLAYSVPLVQILRS---RTVNKVRAIILVPTKILIHQVYDCLSKLSQGTSLNV 291
A TGSGKTLA+ +P +++L + N II+ PT+ L Q Y LS+L +G++L
Sbjct: 112 AKTGSGKTLAFLLPAIELLHKLNWKQHNGTGVIIVSPTRELSMQTYGVLSELLEGSNLTY 171
Query: 292 SMSKLENSLKEEHNKFLYNSPDILIITPGRLVDHLQ-MESFDLKTLKFLVLDEADRLLNQ 350
+ ++ E +K L IL+ TPGRL+DHLQ ++F ++ +K L++DEADR+L+
Sbjct: 172 GLVMGGSNRSAEKDK-LAKGVSILVATPGRLLDHLQNTDNFLVRNMKCLIIDEADRILDI 230
Query: 351 SFQNWNQVLFHHLTNDKQDKRPGNVIKMVFSATLTTNAEKLYNLYLHNPKIFLTDSVKLY 410
F+ Q + HL +Q M+FSAT + ++L L LH+ + ++ K
Sbjct: 231 GFEIEMQQVLRHLPKQRQS--------MLFSATHSPKVDELVKLALHSNPVRVSVHEKAE 282
Query: 411 SIPKK-LQELNVNIPTAKSLFKPLLLLRIIHDIKSSASRNAKILVFVKS-NEASIRLESL 468
+ LQ+ + P+ K L LLL + K+ K++VF S N E L
Sbjct: 283 EATVEGLQQGYIVAPSDKRL---LLLFTFLKKNKTK-----KVMVFFSSCNSVKFHHELL 334
Query: 469 LHAMLGSGIIEDEYNMFLXXXXXXXXXXXXRKLIQEFASSEQKKSVLISTDIMARGIDIN 528
+ + I + ++ F + + +L+ TD+ ARG+DI
Sbjct: 335 NYIDIPCMSIHGKQKQ-------------QKRTTTFFQFCQAETGILLCTDVAARGLDIP 381
Query: 529 EITHVINYDLPISSQQYVHRCGRTARANTEGIAINLLVGKGEQ 571
+ ++ YD ++Y+HR GRTAR T G LLV + E+
Sbjct: 382 AVDWIVQYDPTDEPREYIHRVGRTAR-GTNGSGKALLVLRPEE 423
>CE00337 [A] KOG0330 ATP-dependent RNA helicase
Length = 489
Score = 134 bits (338), Expect = 3e-31
Identities = 103/362 (28%), Positives = 176/362 (48%), Gaps = 35/362 (9%)
Query: 230 DILVNASTGSGKTLAYSVPLVQILRSRTVNKVRAIILVPTKILIHQVYDCLSKLSQGTSL 289
D++ A TGSGKT A+++P++Q L ++L PT+ L Q+ L G L
Sbjct: 83 DVIGLAETGSGKTGAFAIPVLQSLLDHP-QAFFCLVLTPTRELAFQIGQQFEALGSGIGL 141
Query: 290 NVSMSKLENSLKEEHNKFLYNSPDILIITPGRLVDHLQ-MESFDLKTLKFLVLDEADRLL 348
++ + + L P I++ TPGRLVDHL+ + F+LK LKFL++DEADR+L
Sbjct: 142 IAAVIVGGVDMAAQAMA-LARRPHIIVATPGRLVDHLENTKGFNLKALKFLIMDEADRIL 200
Query: 349 NQSFQNWNQVLFHHLTNDKQDKRPGNVIKMVFSATLTTNAEKLYNLYLHNPKIFLTDSVK 408
N F+ + + +++ +FSAT+T KL L +P V
Sbjct: 201 NMDFEVELDKILKVIPRERR--------TYLFSATMTKKVSKLERASLRDPA-----RVS 247
Query: 409 LYSIPKKLQELNVNIPTAKSLFKPLLLLRIIHDIKSSASRNAKILVFVKSNEASIRLESL 468
+ S K + L + + +K L+ ++++ +++ +VF + ++++ +
Sbjct: 248 VSSRYKTVDNLKQHYIFVPNKYKETYLVYLLNEHAGNSA-----IVFCATCATTMQIAVM 302
Query: 469 LHAMLGSGIIEDEYNMFLXXXXXXXXXXXXRKLIQEFASSEQKKSVLISTDIMARGIDIN 528
L LG + M ++L + + +L+ TD+ ARG+DI
Sbjct: 303 LR-QLGMQAVPLHGQM-----------SQEKRLGSLNKFKSKAREILVCTDVAARGLDIP 350
Query: 529 EITHVINYDLPISSQQYVHRCGRTARANTEGIAINLLVGKGEQKFWSQHIDTDLSRDIDG 588
+ VINYD+P S+ YVHR GRTARA GIAI ++ + + Q I+ +L + +D
Sbjct: 351 HVDMVINYDMPSQSKDYVHRVGRTARAGRSGIAITVVTQYDVEAY--QKIEANLGKKLDE 408
Query: 589 YQ 590
Y+
Sbjct: 409 YK 410
>YGL078c [A] KOG0331 ATP-dependent RNA helicase
Length = 523
Score = 134 bits (336), Expect = 5e-31
Identities = 94/338 (27%), Positives = 165/338 (48%), Gaps = 29/338 (8%)
Query: 230 DILVNASTGSGKTLAYSVPLVQ-ILRSRTVNKVRAIILVPTKILIHQVYDCLSKLSQGTS 288
D++ A TGSGKT A+ VP + ++ + ++ +++ PT+ L Q+YD L L+
Sbjct: 151 DVVGVAETGSGKTFAFGVPAISHLMNDQKKRGIQVLVISPTRELASQIYDNLIVLTDKVG 210
Query: 289 LNVSMSKLENSLKEEHNKFLYNSPDILIITPGRLVDHLQMESFDLKTLKFLVLDEADRLL 348
+ + + ++ + +++ TPGRL+D LQ S DL + +LVLDEADR+L
Sbjct: 211 MQCCC--VYGGVPKDEQRIQLKKSQVVVATPGRLLDLLQEGSVDLSQVNYLVLDEADRML 268
Query: 349 NQSFQNWNQVLFHHLTNDKQDKRPGNVIKMVFSATLTTNAEKLYNLYLHNP-KIFLTDSV 407
+ F+ + + K+ ++F+AT +L + +++NP K+ + ++
Sbjct: 269 EKGFEEDIKNIIRETDASKRQT-------LMFTATWPKEVRELASTFMNNPIKVSIGNTD 321
Query: 408 KLYSIPKKLQELNVNIPTAKSLFKPLLLLRIIHDIKSSASRNAKILVFVKSNEASIRLES 467
+L + + Q + V P K LL ++ S +N K+L+F + + R+E
Sbjct: 322 QLTANKRITQIVEVVDPRGKER----KLLELLKKYHSGPKKNEKVLIFALYKKEAARVER 377
Query: 468 LLHAMLGSGIIEDEYNMFLXXXXXXXXXXXXR-KLIQEFASSEQKKSVLISTDIMARGID 526
L +YN + R + + EF S K ++L++TD+ ARG+D
Sbjct: 378 NL-----------KYNGYNVAAIHGDLSQQQRTQALNEFKSG--KSNLLLATDVAARGLD 424
Query: 527 INEITHVINYDLPISSQQYVHRCGRTARANTEGIAINL 564
I + VIN P++ + YVHR GRT RA G A L
Sbjct: 425 IPNVKTVINLTFPLTVEDYVHRIGRTGRAGQTGTAHTL 462
>Hs9506931 [A] KOG0346 RNA helicase
Length = 547
Score = 133 bits (334), Expect = 9e-31
Identities = 132/466 (28%), Positives = 207/466 (44%), Gaps = 62/466 (13%)
Query: 182 LDARLLKNITSNFSSETFPIQTILFDKVLPLLNSSFKANRKLFTRRVGDILVNASTGSGK 241
LD RLL+ +T S T++ +K +PL D+L A TGSGK
Sbjct: 14 LDPRLLQAVTDLGWSRP----TLIQEKAIPLALEG------------KDLLARARTGSGK 57
Query: 242 TLAYSVPLVQILRSRTV------NKVRAIILVPTKILIHQVYDCLSKLSQGTSLNV---S 292
T AY++P++Q+L R VR ++LVPTK L Q + +L+ + +V +
Sbjct: 58 TAAYAIPMLQLLLHRKATGPVVEQAVRGLVLVPTKELARQAQSMIQQLATYCARDVRVAN 117
Query: 293 MSKLENSLKEEHNKFLYNSPDILIITPGRLVDHLQMESFDLK-TLKFLVLDEADRLLNQS 351
+S E+S+ + L PD+++ TP R++ HLQ +S L+ +L+ LV+DEAD L +
Sbjct: 118 VSAAEDSVSQ--RAVLMEKPDVVVGTPSRILSHLQQDSLKLRDSLELLVVDEADLLFSFG 175
Query: 352 FQNWNQVLFHHLTNDKQDKRPGNVIKMVFSATLTTNAEKLYNLYLHNPKIFLTDSVKLYS 411
F+ + L HL Q + SAT + + L L LHNP +L
Sbjct: 176 FEEELKSLLCHLPRIYQ--------AFLMSATFNEDVQALKELILHNPVTLKLQESQLPG 227
Query: 412 IPKKLQELNVNIPTAKSLFKPLLLLRIIHDIKSSASRNAKILVFVKSNEASIRLESLLH- 470
P +LQ+ V T + F L L +K S R K L+FV + E S RL L
Sbjct: 228 -PDQLQQFQVVCETEEDKFLLLYAL-----LKLSLIR-GKSLLFVNTLERSYRLRLFLEQ 280
Query: 471 -----AMLGSGI-------IEDEYNMFLXXXXXXXXXXXXRKLIQEFASSEQKKSVLIST 518
+L + I ++N ++ K S
Sbjct: 281 FSIPTCVLNGELPLRSRCHIISQFNQGFYDCVIATDAEVLGAPVKGKRRGRGPKGDKASD 340
Query: 519 DI--MARGIDINEITHVINYDLPISSQQYVHRCGRTARANTEGIAINLLVGKGEQKFWSQ 576
+ARGID + ++ V+N+DLP + + Y+HR GRTARAN GI + ++ ++F
Sbjct: 341 PEAGVARGIDFHHVSAVLNFDLPPTPEAYIHRAGRTARANNPGIVLTFVL--PTEQFHLG 398
Query: 577 HIDTDLSRDIDG--YQPSAYLDEEKLSELFSIEDTLKDTYKGCIKQ 620
I+ LS + G P + EE + D ++ K I++
Sbjct: 399 KIEELLSGENRGPILLPYQFRMEEIEGFRYRCRDAMRSVTKQAIRE 444
>YHR065c [A] KOG0330 ATP-dependent RNA helicase
Length = 543
Score = 132 bits (332), Expect = 2e-30
Identities = 105/339 (30%), Positives = 168/339 (48%), Gaps = 36/339 (10%)
Query: 230 DILVNASTGSGKTLAYSVPLVQILRSRTVNKVRAIILVPTKILIHQVYDCLSKLSQGTSL 289
DI+ A TGSGKT A+++P++ L A IL PT+ L Q+ + L G+ +
Sbjct: 162 DIIGLAQTGSGKTAAFAIPILNRLW-HDQEPYYACILAPTRELAQQIKETFDSL--GSLM 218
Query: 290 NVSMSKLENSLKE-EHNKFLYNSPDILIITPGRLVDHLQ-MESFDLKTLKFLVLDEADRL 347
V + + + + + L P I+I TPGRL+DHL+ + F L+ LKFLV+DEADRL
Sbjct: 219 GVRSTCIVGGMNMMDQARDLMRKPHIIIATPGRLMDHLENTKGFSLRKLKFLVMDEADRL 278
Query: 348 LNQSFQNWNQVLFHHLTNDKQDKRPGNVIKMVFSATLTTNAEKLYNLYLHNPKIFLTDSV 407
L+ F VL L +R +FSAT+T+ +KL L NP + S
Sbjct: 279 LDMEF---GPVLDRILKIIPTQER----TTYLFSATMTSKIDKLQRASLTNP-VKCAVSN 330
Query: 408 KLYSIPKKLQELNVNIPTAKSLFKPLLLLRIIHDIKSSASRNAKILVFVKSNEASIRLES 467
K ++ +Q L V K+ + LL I +++F ++ + RL
Sbjct: 331 KYQTVDTLVQTLMVVPGGLKNTYLIYLLNEFI---------GKTMIIFTRTKANAERLSG 381
Query: 468 LLHAM-LGSGIIEDEYNMFLXXXXXXXXXXXXRKLIQEFASSEQKKSVLISTDIMARGID 526
L + + + + + N +++ K+S+L++TD+ ARG+D
Sbjct: 382 LCNLLEFSATALHGDLNQ-------------NQRMGSLDLFKAGKRSILVATDVAARGLD 428
Query: 527 INEITHVINYDLPISSQQYVHRCGRTARANTEGIAINLL 565
I + V+NYD+P+ S+ Y+HR GRTARA G +I+L+
Sbjct: 429 IPSVDIVVNYDIPVDSKSYIHRVGRTARAGRSGKSISLV 467
>SPAC823.08c [A] KOG0330 ATP-dependent RNA helicase
Length = 465
Score = 132 bits (331), Expect = 2e-30
Identities = 108/383 (28%), Positives = 188/383 (48%), Gaps = 50/383 (13%)
Query: 230 DILVNASTGSGKTLAYSVPLVQILRSRTVNKVRAIILVPTKILIHQVYDCLSKLSQGTSL 289
D++ A TGSGKT A+++P++Q L + + A++L PT+ L +Q+ + + G S+
Sbjct: 85 DVIGLAQTGSGKTAAFALPVIQELWNNP-SPFFAVVLAPTRELAYQISEQFEAI--GGSI 141
Query: 290 NVSMSKLENSLKEEHNKF-LYNSPDILIITPGRLVDHLQ-MESFDLKTLKFLVLDEADRL 347
V + + L P +L+ TPGRL+DHL+ + F LK LK+L++DEADRL
Sbjct: 142 GVRSVVIVGGMDMVTQAVALSKKPHVLVCTPGRLMDHLENTKGFSLKNLKYLIMDEADRL 201
Query: 348 LNQSFQNWNQVLFHHLTNDKQDKRPGNVIKMVFSATLTTNAEKLYNLYLHNPKIFLTDSV 407
L+ F + + ++++ ++FSAT+T+ EKL LH P + + S
Sbjct: 202 LDMDFGPIIDKILKIIPHERRT--------LLFSATMTSKVEKLQRASLHQP-VRVAVSS 252
Query: 408 KLYSIPKKLQELNVNIPTAKSLFKPL-----LLLRIIHDIKSSASRNAKILVFVKSNEAS 462
K ++ +Q + LF P L+ +++++ ++ I++F ++ +
Sbjct: 253 KFSTVDTLIQ---------RYLFFPFKHKDTYLVYLVNELAGNS-----IIIFARTVNDT 298
Query: 463 IRLESLLHAMLGSGIIEDEYNMFLXXXXXXXXXXXXRKLIQEFASSEQKKSVLISTDIMA 522
RL LL + S I + +F S +S L++TD+ A
Sbjct: 299 QRLAILLRTLGFSAI----------PLHGQLSQSNRLGALNKFKSGA--RSTLVATDVAA 346
Query: 523 RGIDINEITHVINYDLPISSQQYVHRCGRTARANTEGIAINLLVGKGEQKFWSQHIDTDL 582
RG+DI + VINYD+P S+ Y+HR GRTARA G +I L+ + F I+ +
Sbjct: 347 RGLDIPLVDVVINYDIPTDSKAYIHRVGRTARAGRAGKSIALVTQYDLEPF--LRIEATI 404
Query: 583 SRDIDGYQ---PSAYLDEEKLSE 602
+ + Y+ +L E++ E
Sbjct: 405 GKKMQEYEIDKEGVFLLSERVGE 427
>SPAC22F3.08c [A] KOG0344 ATP-dependent RNA helicase
Length = 481
Score = 131 bits (330), Expect = 3e-30
Identities = 108/337 (32%), Positives = 162/337 (48%), Gaps = 36/337 (10%)
Query: 230 DILVNASTGSGKTLAYSVPLVQILRSRTVNKVRAIILVPTKILIHQVYDCLSKLSQGTSL 289
D+L A TGSGKT+AY P++Q L+ RAII+ PT+ L Q+Y KLS GTSL
Sbjct: 85 DLLACAPTGSGKTIAYLFPILQKLQLHVPGGYRAIIVAPTRELCEQIYRQAEKLSFGTSL 144
Query: 290 N-VSMSKLENSLKEEHNKFLYNSPDILIITPGRLVDHLQMESFDLKTLKFLVLDEADRLL 348
+ +SK ++E+ K L D+ I TP RLV +Q + ++F V+DEADRL
Sbjct: 145 KIIELSKSNEKIQEKAPK-LREKYDMCIGTPMRLVQAIQ-TGLSFEKVEFFVMDEADRLF 202
Query: 349 NQSFQNWNQVLFHHLTNDKQDKRPGNVIKMVFSATLTTNAEKLYNLYLHNPKIFLT--DS 406
F + T+ N+ K +FSAT+ + E+L + +P +
Sbjct: 203 EPGFIEQTDHILSACTS-------SNICKSLFSATIPSRVEELAKVVTVDPIRIIVGLKD 255
Query: 407 VKLYSIPKKLQELNVNIPTAKSLFKPLLLLRIIHDIKSSASRNAKILVFVKSNE-ASIRL 465
SI ++L L V T+K + I+ + S+ ++++FV+ E A
Sbjct: 256 AATDSIDQRL--LFVGSDTSK--------IVILRQMISNGELKPRVVIFVQDIERAKALY 305
Query: 466 ESLLHAMLGSGIIEDEYNMFLXXXXXXXXXXXXRKLIQEFASSEQKKSVLISTDIMARGI 525
LL + G+I E + + +F E VLI+TD++ARGI
Sbjct: 306 TELLFDEIHVGVIHGELPQ-----------AKREEALAKFRKGE--IWVLIATDLLARGI 352
Query: 526 DINEITHVINYDLPISSQQYVHRCGRTARANTEGIAI 562
D + + VIN+D P S Y+HR GRT RA G A+
Sbjct: 353 DFHGVKMVINFDFPQSVHSYIHRIGRTGRAGNTGQAV 389
>SPAC1093.05 [A] KOG0343 RNA Helicase
Length = 735
Score = 130 bits (327), Expect = 6e-30
Identities = 108/345 (31%), Positives = 165/345 (47%), Gaps = 32/345 (9%)
Query: 230 DILVNASTGSGKTLAYSVPLVQILRSR---TVNKVRAIILVPTKILIHQVYDCLSKLSQG 286
DIL A TGSGKTLA+ VPL++ L + +++ + A+++ PT+ L Q ++ L K+ +
Sbjct: 78 DILGAAKTGSGKTLAFIVPLIENLYRKKWTSLDGLGALVISPTRELAIQTFETLVKIGRL 137
Query: 287 TSLNVSMSKLENSLKEEHNKFLYNSPDILIITPGRLVDHL-QMESFDLKTLKFLVLDEAD 345
S + + N+ KEE + + +IL+ TPGRL+ H+ Q +FD L+ L+LDEAD
Sbjct: 138 HSFSAGLIIGGNNYKEEKERL--SRMNILVCTPGRLLQHIDQAVNFDTSGLQMLILDEAD 195
Query: 346 RLLNQSFQNWNQVLFHHLTNDKQDKRPGNVIKMVFSATLTTNAEKLYNLYLHNPKIFLTD 405
R+L+ F+ + L +Q M+FSAT T + + L L L NP
Sbjct: 196 RILDMGFRTTLDAIVSSLPVHRQ--------TMLFSATQTKSVKDLARLSLQNPDFISVH 247
Query: 406 SVKLYSIPKKLQELNVNIPTAKSLFKPLLLLRIIHDIKSSASRNAKILVFVKSNEASIRL 465
S P L + + +P + L +L I +K K +VF+ S + +R
Sbjct: 248 ENDTSSTPSNLNQFYLTVPLTEKL--DILFGFIRTHLK------FKTIVFLSSCK-QVRF 298
Query: 466 ESLLHAMLGSGIIEDEYNMFLXXXXXXXXXXXXRKLIQEFASSEQKKSVLISTDIMARGI 525
+ GI L ++ +F SS + VL TDI+ARG+
Sbjct: 299 VYETFRRMRPGI-------SLLHLHGKQKQTTRTEVTAKFTSS--RHVVLFCTDIVARGL 349
Query: 526 DINEITHVINYDLPISSQQYVHRCGRTARANTEGIAINLLVGKGE 570
D + VI D P Y+HR GRTAR N G A+ LL+ E
Sbjct: 350 DFPAVDWVIQLDAPEDVDTYIHRVGRTARYNRSGNALLLLLPSEE 394
>Hs17505907 [A] KOG0348 ATP-dependent RNA helicase
Length = 851
Score = 130 bits (326), Expect = 8e-30
Identities = 105/374 (28%), Positives = 178/374 (47%), Gaps = 49/374 (13%)
Query: 230 DILVNASTGSGKTLAYSVPLVQILRSRTVNKVR-----AIILVPTKILIHQVYDCLSKLS 284
D LV + TGSGKTLAY +P+VQ L++ R A++LVPT+ L Q +D + KL
Sbjct: 270 DALVRSQTGSGKTLAYCIPVVQSLQAMESKIQRSDGPYALVLVPTRELALQSFDTVQKLL 329
Query: 285 QGTSLNVSMSKLENSLKEEHNKFLYNSPDILIITPGRLVDHLQM-ESFDLKTLKFLVLDE 343
+ + V + ++ L +ILI TPGRLVDH++ ++ L++LV DE
Sbjct: 330 KPFTWIVPGVLMGGEKRKSEKARLRKGINILISTPGRLVDHIKSTKNIHFSRLRWLVFDE 389
Query: 344 ADRLLNQSFQNWNQVLFHHLTNDKQDKRPGNVIKMVFSATLTTNAEKLYNLYLHNPKIFL 403
ADR+L+ F+ V+ + + + Q ++ ++ SATLT +L ++ LH+P
Sbjct: 390 ADRILDLGFEKDITVILNAVNAECQKRQ-----NVLLSATLTEGVTRLADISLHDPVSIS 444
Query: 404 T------------------------DSVKLYSIPKKLQELNVNIPTAKSLFKPLLLLRII 439
D + ++IP+ L++ ++ S + + L I
Sbjct: 445 VLDKSHDQLNPKDKAVQEVCPPPAGDKLDSFAIPESLKQ---HVTVVPSKLRLVCLAAFI 501
Query: 440 HDIKSSASRNAKILVFVKSNEA-----SIRLESLLH---AMLGSGIIEDEYNMFLXXXXX 491
K + K++VF S E S+ L++LL A + +
Sbjct: 502 LQ-KCKFEEDQKMVVFFSSCELVEFHYSLFLQTLLSSSGAPASGQLPSASMRLKFLRLHG 560
Query: 492 XXXXXXXRKLIQEFASSEQKKSVLISTDIMARGIDINEITHVINYDLPISSQQYVHRCGR 551
+ QEF+ S ++ VL+ TD+ ARG+D+ ++T ++ Y+ P S +Y+HR GR
Sbjct: 561 GMEQEERTAVFQEFSHS--RRGVLLCTDVAARGLDLPQVTWIVQYNAPSSPAEYIHRIGR 618
Query: 552 TARANTEGIAINLL 565
TAR G ++ +L
Sbjct: 619 TARIGCHGSSLLIL 632
>7299006 [A] KOG0345 ATP-dependent RNA helicase
Length = 613
Score = 130 bits (326), Expect = 8e-30
Identities = 108/381 (28%), Positives = 184/381 (47%), Gaps = 45/381 (11%)
Query: 201 IQTILFDKVLPLLNSSFKANRKLFTRRVGDILVNASTGSGKTLAYSVPLVQILRSR---- 256
+Q+ F ++ P+ ++ L R+ D+ A TGSGKTLA+ VP+++IL+ R
Sbjct: 22 VQSFGFQQMTPVQTAAIPL---LLARK--DVSAEAVTGSGKTLAFLVPMLEILQRRHKET 76
Query: 257 --TVNKVRAIILVPTKILIHQVYDCLSKLSQGTS---LNVSMSKLENSLKEEHNKFLYNS 311
++ A+++ PT+ L Q+ + L++ + LN + NS++E+ +
Sbjct: 77 PWGPKEIGALVISPTRELARQISEVLAQFLEHEDLEHLNQQLIVGGNSIEEDIATLRRET 136
Query: 312 PDILIITPGRLVDHLQMESFDL------KTLKFLVLDEADRLLNQSFQNWNQVLFHHLTN 365
P IL+ TPGRL D Q + DL K+L+FLVLDEADRLL+ F+ + +L
Sbjct: 137 PCILVCTPGRLEDLFQRKGDDLNLAAQVKSLEFLVLDEADRLLDLGFKTSVNNILGYL-- 194
Query: 366 DKQDKRPGNVIKMVFSATLTTNAEKLYNLYLHNPKIFLTDSVKLYSIPKKLQELNVNIPT 425
+ +R G +FSAT TT L L NP + + P +LQ
Sbjct: 195 -PRQRRTG-----LFSATQTTEVTDLIRAGLRNPVLVSVKEKASVNTPARLQNF------ 242
Query: 426 AKSLFKPLLLLRIIHDIKSSASRNAKILVFVKSNEASIRLESLLHAMLGSGIIEDEYNMF 485
+ + L + ++ + S A+ K++VF + L +L + +
Sbjct: 243 YRIVEPELKFVALLEFLSSPATVIGKVMVFFPTCACVEYWAEALPPLLPKRTVLGIHGKM 302
Query: 486 LXXXXXXXXXXXXRKLIQEFASSEQKKSVLISTDIMARGIDINEITHVINYDLPISSQQY 545
++++F ++ Q +VL+ TD++ARG+D+ EI V+ +D P ++ +
Sbjct: 303 ---------KNKRANVVEKFRNTPQ--AVLLCTDVLARGLDVPEIEWVVQWDPPSTASSF 351
Query: 546 VHRCGRTARANTEGIAINLLV 566
VHR GRTAR EG A+ L+
Sbjct: 352 VHRVGRTARQGNEGNALVFLL 372
>YDR194c [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 664
Score = 129 bits (324), Expect = 1e-29
Identities = 128/480 (26%), Positives = 219/480 (44%), Gaps = 74/480 (15%)
Query: 179 EGELDARLLKNITSNFSSETFPIQTILFDKVLPLLNSSFKANRKLFTRRVGDILVNASTG 238
EG LD + K IT P+Q + P+L+S D++ A TG
Sbjct: 110 EGVLDKEIHKAITRMEFPGLTPVQQ---KTIKPILSSEDH-----------DVIARAKTG 155
Query: 239 SGKTLAYSVPLVQILRSRTVNK---VRAIILVPTKILIHQV----------------YDC 279
+GKT A+ +P+ Q L + + V+A+I+ PT+ L Q+ Y C
Sbjct: 156 TGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYAC 215
Query: 280 LSKLSQGTSLNVSMSKLENSLKEEHNKFLYNSPDILIITPGRLVDHLQMESFDLKTLKFL 339
+S L GT +M+K+ N L+ P+I+I TPGRL+D L E + K +F+
Sbjct: 216 VS-LVGGTDFRAAMNKM-NKLR----------PNIVIATPGRLIDVL--EKYSNKFFRFV 261
Query: 340 ---VLDEADRLLNQSFQNWNQVLFHHLTNDKQDKRPGNVIKMVFSATLTTNAEKLYNLYL 396
VLDEADRLL F++ + + + N+K K N+ ++FSATL +KL N +
Sbjct: 262 DYKVLDEADRLLEIGFRDDLETI-SGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIM 320
Query: 397 HNPKIFLTDSVKLYSIPKKLQELNVNIPTAKSLFKPLLLLRIIHDIKSSASR--NAKILV 454
+ + D+V P+ + ++ ++ ++ F + + H K R N K ++
Sbjct: 321 NKKECLFLDTVDKNE-PEAHERIDQSVVISEK-FANSIFAAVEHIKKQIKERDSNYKAII 378
Query: 455 FVKSNEASIRLESLLHAMLGSGIIEDEYNMFLXXXXXXXXXXXXRKLIQEFASSEQKKSV 514
F + ++ S L ++L + +D + + L++ F E +
Sbjct: 379 FAPT----VKFTSFLCSILKNEFKKD---LPILEFHGKITQNKRTSLVKRFKKDES--GI 429
Query: 515 LISTDIMARGIDINEITHVINYDLPISSQQYVHRCGRTARANTEGIAINLLVGKGEQKFW 574
L+ TD+ ARG+D + V+ +P Y+HR GRTAR+ EG ++ L + K E F
Sbjct: 430 LVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSV-LFICKDELPFV 488
Query: 575 SQHIDTD--LSRDIDGYQPSAYLDEEKL-------SELFSIEDTLKDTYKGCIKQLQTSK 625
+ D + + Y+PS + E L ++ I +L +Y+ CIK+ + S+
Sbjct: 489 RELEDAKNIVIAKQEKYEPSEEIKSEVLEAVTEEPEDISDIVISLISSYRSCIKEYRFSE 548
>Hs13514831 [A] KOG0343 RNA Helicase
Length = 875
Score = 129 bits (323), Expect = 2e-29
Identities = 102/393 (25%), Positives = 178/393 (44%), Gaps = 34/393 (8%)
Query: 230 DILVNASTGSGKTLAYSVPLVQI---LRSRTVNKVRAIILVPTKILIHQVYDCLSKLSQG 286
D+L A TGSGKTLA+ VP+++ L+ + + + +I+ PT+ L +Q ++ L K+ +
Sbjct: 108 DVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLIISPTRELAYQTFEVLRKVGKN 167
Query: 287 TSLNVSMSKLENSLKEEHNKFLYNSPDILIITPGRLVDHL-QMESFDLKTLKFLVLDEAD 345
+ + LK E + N+ +IL+ TPGRL+ H+ + SF L+ LVLDEAD
Sbjct: 168 HDFSAGLIIGGKDLKHEAERI--NNINILVCTPGRLLQHMDETVSFHATDLQMLVLDEAD 225
Query: 346 RLLNQSFQNWNQVLFHHLTNDKQDKRPGNVIKMVFSATLTTNAEKLYNLYLHNPKIFLTD 405
R+L+ F + + +L +Q ++FSAT T + + L L L NP+
Sbjct: 226 RILDMGFADTMNAVIENLPKKRQ--------TLLFSATQTKSVKDLARLSLKNPEYVWVH 277
Query: 406 SVKLYSIPKKLQELNVNIPTAKSLFKPLLLLRIIHDIKSSASRNAKILVFVKSNEASIRL 465
YS P L++ + + + +++ S + I+ F E
Sbjct: 278 EKAKYSTPATLEQNYIVCELQQK-------ISVLYSFLRSHLKKKSIVFFSSCKEVQYLY 330
Query: 466 ESLLHAMLGSGIIEDEYNMFLXXXXXXXXXXXXRKLIQEFASSEQKKSVLISTDIMARGI 525
G I+ ++ EF ++ +VL +TDI ARG+
Sbjct: 331 RVFCRLRPGVSIL---------ALHGRQQQMRRMEVYNEFV--RKRAAVLFATDIAARGL 379
Query: 526 DINEITHVINYDLPISSQQYVHRCGRTARANTEGIAINLLVGKGEQKFWSQHIDTDLSRD 585
D + V+ +D P + Y+HR GRTAR +G A+ +L+ E+ Q + +
Sbjct: 380 DFPAVNWVLQFDCPEDANTYIHRAGRTARYKEDGEALLILL-PSEKAMVQQLLQKKVPVK 438
Query: 586 IDGYQPSAYLD-EEKLSELFSIEDTLKDTYKGC 617
P +D ++KL + + + LK+ + C
Sbjct: 439 EIKINPEKLIDVQKKLESILAQDQDLKERAQRC 471
>SPBC21H7.04 [A] KOG0348 ATP-dependent RNA helicase
Length = 709
Score = 128 bits (322), Expect = 2e-29
Identities = 110/384 (28%), Positives = 179/384 (45%), Gaps = 55/384 (14%)
Query: 230 DILVNASTGSGKTLAYSVPLVQ-------ILRSRTVNKVRAIILVPTKILIHQVYDCLSK 282
D + A TGSGKTLAY +P+VQ L +RT + + A+I+ PT+ L Q+Y+ +K
Sbjct: 180 DAFIEAQTGSGKTLAYLLPIVQRLIRLPKNLHTRT-SGIYAVIMAPTRELCQQIYNVANK 238
Query: 283 LSQGTSLN--VSMSKLENSLKEEHNKFLYNSPDILIITPGRLVDHLQ-MESFDLKTLKFL 339
L+ + VS + + K+ + +ILI TPGRL DHL+ E+ D+ ++++
Sbjct: 239 LNNNPLSHWIVSCNVIGGEKKKSEKARIRKGVNILIGTPGRLADHLENTEALDVSQVRWV 298
Query: 340 VLDEADRLLNQSFQNWNQVLFHHLTND-----KQDKRPGNVIKMVFSATLTTNAEKLYN- 393
VLDE DRL++ F+ + +L + K P + M+ SAT+ ++L +
Sbjct: 299 VLDEGDRLMDMGFEETLTKILSYLESQSSIIKKDLSIPSRKVTMLCSATMKDTVKRLSDS 358
Query: 394 -----LYLHNPKIFLTDSVKLYSIPKKLQELNVNIPTAKSLFKPLLLLRIIHDIKSSASR 448
LYL + + T+ P++L + V +P L + LLR S
Sbjct: 359 ALKDALYLKSSIVEETND-GYSQAPEQLLQRYVVVPPKLRLVSLVALLR------SHVRS 411
Query: 449 NAKILVFVK-SNEASIRLESLLHAMLGSGI----------------------IEDEYNMF 485
KI++F+ S+ E+ A+ + I+ + N++
Sbjct: 412 YKKIIIFLSCSDSVDFHFEAFRCAINADEMEEAVKEKPDSEGDIISNAPALRIDGKSNVY 471
Query: 486 LXXXXXXXXXXXXRKLIQEFASSEQKKS-VLISTDIMARGIDINEITHVINYDLPISSQQ 544
+ F+SSE S +L+ TD+ ARG+D+ + V+ YD P S+
Sbjct: 472 --RLHGSLSQQIRTSTLNLFSSSEDSGSHILLCTDVAARGLDLPNVDLVVQYDAPFSTDD 529
Query: 545 YVHRCGRTARANTEGIAINLLVGK 568
Y+HR GRTARA G AI L+ K
Sbjct: 530 YLHRIGRTARAGHNGAAIMFLLPK 553
>Hs15316941 [A] KOG0344 ATP-dependent RNA helicase
Length = 491
Score = 127 bits (320), Expect = 4e-29
Identities = 121/390 (31%), Positives = 189/390 (48%), Gaps = 51/390 (13%)
Query: 179 EGELDARLLKNITSNFSSETFPIQTILFDKVLPLLNSSFKANRKLFTRRVGDILVNASTG 238
E ++++RLL+NI PIQ + +P++ L R ++L +A TG
Sbjct: 61 EYKINSRLLQNILDAGFQMPTPIQM----QAIPVM---------LHGR---ELLASAPTG 104
Query: 239 SGKTLAYSVPLVQILRSRTVNKVRAIILVPTKILIHQVYDCLSKLSQGTSLNVSMSKLEN 298
SGKTLA+S+P++ L+ RA+I+ PT+ L Q++ L K+S+GT + M
Sbjct: 105 SGKTLAFSIPILMQLKQPANKGFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAA 164
Query: 299 SLKEEHNKFLYNSPDILIITPGRLVDHLQME--SFDLKTLKFLVLDEADRLLNQS---FQ 353
++ DIL+ TP RL+ L+ + DL ++++LV+DE+D+L F+
Sbjct: 165 VAAKKFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLASVEWLVVDESDKLFEDGKTGFR 224
Query: 354 NWNQVLFHHLTNDKQDKRPGNVIKMVFSATLTTNAEKLYNLYLHNPKIFLTDSVKLYSIP 413
+ +F T+ K V + +FSAT + E+ L L N I ++ + ++
Sbjct: 225 DQLASIFLACTSHK-------VRRAMFSATFAYDVEQWCKLNLDNV-ISVSIGARNSAVE 276
Query: 414 KKLQELN-VNIPTAKSLFKPLLLLRIIHDIKSSASRNAKILVFVKSNEASIRLESLLHAM 472
QEL V T K LL +R + +K N +LVFV+S E R + L H +
Sbjct: 277 TVEQELLFVGSETGK-----LLAMREL--VKKGF--NPPVLVFVQSIE---RAKELFHEL 324
Query: 473 LGSGIIEDEYNMFLXXXXXXXXXXXXRKLIQEFASSEQKKSVLISTDIMARGIDINEITH 532
+ GI D + + F + K VLI T ++ARGID +
Sbjct: 325 IYEGINVDVIH-------AERTQQQRDNTVHSFRAG--KIWVLICTALLARGIDFKGVNL 375
Query: 533 VINYDLPISSQQYVHRCGRTARANTEGIAI 562
VINYD P SS +Y+HR GRT RA +G AI
Sbjct: 376 VINYDFPTSSVEYIHRIGRTGRAGNKGKAI 405
>At3g06480 [A] KOG0331 ATP-dependent RNA helicase
Length = 1088
Score = 127 bits (320), Expect = 4e-29
Identities = 101/336 (30%), Positives = 156/336 (46%), Gaps = 34/336 (10%)
Query: 230 DILVNASTGSGKTLAYSVP---LVQILRSRTVNKVRAIILVPTKILIHQVYDCLSKLSQG 286
DI+ A TGSGKTL Y +P L++ R+ + N +IL PT+ L Q+ D L G
Sbjct: 474 DIVAIAKTGSGKTLGYLIPAFILLRHCRNDSRNGPTVLILAPTRELATQIQD--EALRFG 531
Query: 287 TSLNVSMSKLENSL-KEEHNKFLYNSPDILIITPGRLVDHLQMESFDLKTLKFLVLDEAD 345
S +S + L K K L DI++ TPGRL D L+M+ D + + LVLDEAD
Sbjct: 532 RSSRISCTCLYGGAPKGPQLKELERGADIVVATPGRLNDILEMKMIDFQQVSLLVLDEAD 591
Query: 346 RLLNQSFQNWNQVLFHHLTNDKQDKRPGNVIKMVFSATLTTNAEKLYNLYLHNPKIFLTD 405
R+L+ F+ + + + + +Q ++++AT K+ + L NP
Sbjct: 592 RMLDMGFEPQIRKIVNEIPPRRQT--------LMYTATWPKEVRKIASDLLVNPVQVNIG 643
Query: 406 SVKLYSIPKKLQELNVNIPTAKSLFKPLLLLRIIHDIKSSASRNAKILVFVKSNEASIRL 465
V + K + + +P + R + I S R +K+++F + L
Sbjct: 644 RVDELAANKAITQYVEVVPQMEKE-------RRLEQILRSQERGSKVIIFCSTKRLCDHL 696
Query: 466 ESLLHAMLGSGIIEDEYNMFLXXXXXXXXXXXXRKLIQEFASSEQKKSVLISTDIMARGI 525
+ G+ +I + ++ +F S K VLI+TD+ ARG+
Sbjct: 697 ARSVGRHFGAVVIHGDKTQ-----------GERDWVLNQFRSG--KSCVLIATDVAARGL 743
Query: 526 DINEITHVINYDLPISSQQYVHRCGRTARANTEGIA 561
DI +I VINYD P + YVHR GRT RA G+A
Sbjct: 744 DIKDIRVVINYDFPTGVEDYVHRIGRTGRAGATGVA 779
>YGL171w [A] KOG0344 ATP-dependent RNA helicase
Length = 564
Score = 127 bits (319), Expect = 5e-29
Identities = 118/389 (30%), Positives = 187/389 (47%), Gaps = 54/389 (13%)
Query: 183 DARLLKNITSNFSSETFPIQTILFDKVLPLLNSSFKANRKLFTRRVGDILVNASTGSGKT 242
D RLL N+ N +E PIQ + +P+ + NR D+L TGSGKT
Sbjct: 130 DKRLLNNLIENGFTEPTPIQC----ECIPVALN----NR--------DVLACGPTGSGKT 173
Query: 243 LAYSVPLVQ-ILRSRTVNKVRAIILVPTKILIHQVYDCLSKLSQGTSLN----VSMSKLE 297
LA+ +PLVQ I+ + ++ +I+ PTK L +Q++ KLS L + ++ L
Sbjct: 174 LAFLIPLVQQIIDDKQTAGLKGLIISPTKELANQIFIECFKLSYKIFLEKKRPLQVALLS 233
Query: 298 NSLKEE-HNKFLYNSP-DILIITPGRLVDHLQMESFDLKTLKFLVLDEADRLLNQSFQNW 355
SL + NK + + DI+I TP RL+D ++ E+ DL +K L+ DEAD+L +++F
Sbjct: 234 KSLGAKLKNKVVSDKKYDIIISTPLRLIDVVKNEALDLSKVKHLIFDEADKLFDKTFVEQ 293
Query: 356 NQVLFHHLTNDKQDKRPGNVIKMVFSATLTTNAEKLYNLYLHNPKIFLTDSVKLYSIPKK 415
+ + R ++ K +FSAT+ +N E++ + + D V++ K+
Sbjct: 294 SDDILSAC-------REPSLRKAMFSATIPSNVEEI-------AQSIMMDPVRVIIGHKE 339
Query: 416 LQELNVNIPTAKSLF--KPLLLLRIIHDIKSSASRNAKILVFVKSNEASIRLESLLHAML 473
N+ K +F L I + I++F+ E+ R ++L H ++
Sbjct: 340 AANTNIE---QKLIFCGNEEGKLIAIRQLVQEGEFKPPIIIFL---ESITRAKALYHELM 393
Query: 474 GSGIIEDEYNMFLXXXXXXXXXXXXRKLIQEFASSEQKKSVLISTDIMARGIDINEITHV 533
I D + ++I+ F + E LI TD++ARGID + V
Sbjct: 394 YDRINVDVIH-------AERTALQRDRIIERFKTGELW--CLICTDVLARGIDFKGVNLV 444
Query: 534 INYDLPISSQQYVHRCGRTARANTEGIAI 562
INYD+P SSQ YVHR GRT R G AI
Sbjct: 445 INYDVPGSSQAYVHRIGRTGRGGRSGKAI 473
>Hs10346129 [A] KOG0336 ATP-dependent RNA helicase
Length = 648
Score = 127 bits (319), Expect = 5e-29
Identities = 121/427 (28%), Positives = 198/427 (46%), Gaps = 52/427 (12%)
Query: 155 KSTAWDAATKIHYDSKMVKQFDSYEGEL---DARLLKNITSNFSS--ETFP-----IQTI 204
+STA A +K+ DS + F+ +L + R + N T F + +P I+
Sbjct: 201 ESTATSAMSKVEADSWRKENFNITWDDLKDGEKRPIPNPTCTFDDAFQCYPEVMENIKKA 260
Query: 205 LFDKVLPLLNSSFKANRKLFTRRVGDILVNASTGSGKTLAYSVP-----LVQILRSRTVN 259
F K P+ + ++ + D++ A TG+GKTL Y +P ++Q N
Sbjct: 261 GFQKPTPIQSQAWP-----IVLQGIDLIGVAQTGTGKTLCYLMPGFIHLVLQPSLKGQRN 315
Query: 260 KVRAIILVPTKILIHQVYDCLSKLSQGTSLNVSMSKLENSLKEEHNKFLYNSPDILIITP 319
+ ++L PT+ L QV K S +V + N ++E + L DI+I TP
Sbjct: 316 RPGMLVLTPTRELALQVEGECCKYSYKGLRSVCVYGGGN--RDEQIEELKKGVDIIIATP 373
Query: 320 GRLVDHLQMESF-DLKTLKFLVLDEADRLLNQSFQNWNQVLFHHLTNDKQDKRPGNVIKM 378
GRL D LQM +F +LK + +LVLDEAD++L+ F+ + + D+Q +
Sbjct: 374 GRLND-LQMSNFVNLKNITYLVLDEADKMLDMGFEPQIMKILLDVRPDRQT--------V 424
Query: 379 VFSATLTTNAEKLYNLYLHNPKIFLTDSVKLYSIPKKLQELNVNIPTAKSLFKPLLLLRI 438
+ SAT + +L YL P I ++ L ++ Q + V K L
Sbjct: 425 MTSATWPHSVHRLAQSYLKEPMIVYVGTLDLVAVSSVKQNIIVTTEEEKWSHMQTFL--- 481
Query: 439 IHDIKSSASRNAKILVFVKSNEASIRLESLLHAMLGSGIIEDEYNMFLXXXXXXXXXXXX 498
S S K++VFV + L S L +LG+ +E +
Sbjct: 482 -----QSMSSTDKVIVFVSRKAVADHLSSDL--ILGNISVESLHG--------DREQRDR 526
Query: 499 RKLIQEFASSEQKKSVLISTDIMARGIDINEITHVINYDLPISSQQYVHRCGRTARANTE 558
K ++ F + K +LI+TD+ +RG+D++++THV N+D P + ++YVHR GRT RA
Sbjct: 527 EKALENFKTG--KVRILIATDLASRGLDVHDVTHVYNFDFPRNIEEYVHRIGRTGRAGRT 584
Query: 559 GIAINLL 565
G++I L
Sbjct: 585 GVSITTL 591
>YDL031w [A] KOG0337 ATP-dependent RNA helicase
Length = 995
Score = 126 bits (316), Expect = 1e-28
Identities = 121/423 (28%), Positives = 192/423 (44%), Gaps = 73/423 (17%)
Query: 186 LLKNITSNFSSETFPIQTILFDKVLPLLNSSFKANRKLFTRRVGDILVNASTGSGKTLAY 245
L K + +N + F T + K +PL+ S DI+ A TGSGKT A+
Sbjct: 144 LSKIVLNNIKRKGFRQPTPIQRKTIPLILQS------------RDIVGMARTGSGKTAAF 191
Query: 246 SVPLVQILRSRTVN-KVRAIILVPTKILIHQVYDCLSKLSQGTSLNVSMSKLENSLKEEH 304
+P+V+ L+S + RA+IL P++ L Q ++ ++GT L + +SL+E+
Sbjct: 192 ILPMVEKLKSHSGKIGARAVILSPSRELAMQTFNVFKDFARGTELRSVLLTGGDSLEEQF 251
Query: 305 NKFLYNSPDILIITPGRLVDHLQME-SFDLKTLKFLVLDEADRLLNQSFQNWNQVLFHHL 363
+ N PD++I TPGR + HL++E + DLK+++++V DEADRL FQ L L
Sbjct: 252 GMMMTN-PDVIIATPGRFL-HLKVEMNLDLKSVEYVVFDEADRLFEMGFQEQLNELLASL 309
Query: 364 TNDKQDKRPGNVIKMVFSATLTTNAEKLYNLYLHNPKIFLTDSVKLYSIPKKLQELNVNI 423
+Q ++FSATL + L NP + V+L + K + L +
Sbjct: 310 PTTRQ--------TLLFSATLPNSLVDFVKAGLVNPVL-----VRLDAETKVSENLEMLF 356
Query: 424 PTAKSLFKPLLLLRIIHDI------------------------------KSSASRNAKIL 453
++K+ + LL I+ +I + RN K
Sbjct: 357 LSSKNADREANLLYILQEIIKIPLATSEQLQKLQNSNNEADSDSDDENDRQKKRRNFKKE 416
Query: 454 VFVK-----SNEASIRLESLL------HAMLGSGIIEDEYNMFLXXXXXXXXXXXXRKLI 502
F K +NE ++L H S ++ D + R+L
Sbjct: 417 KFRKQKMPAANELPSEKATILFVPTRHHVEYISQLLRDCGYLISYIYGTLDQHARKRQLY 476
Query: 503 QEFASSEQKKSVLISTDIMARGIDINEITHVINYDLPISSQQYVHRCGRTARANTEGIAI 562
A S+L+ TD+ ARG+DI + +VINY LP SS+ +VHR GRTARA +G A
Sbjct: 477 NFRAG---LTSILVVTDVAARGVDIPMLANVINYTLPGSSKIFVHRVGRTARAGNKGWAY 533
Query: 563 NLL 565
+++
Sbjct: 534 SIV 536
>At1g77050 [A] KOG0337 ATP-dependent RNA helicase
Length = 513
Score = 126 bits (316), Expect = 1e-28
Identities = 115/414 (27%), Positives = 194/414 (46%), Gaps = 58/414 (14%)
Query: 161 AATKIHYDSKMVKQFDSYEGELDARLLKNITSNFSSETFPIQTILFDKVLPLLNSSFKAN 220
+ T++H K K+ S G L N+ + + + + T + K +PL+ S
Sbjct: 11 SVTELHRKEKQKKKGKS-GGFESLNLGPNVFNAIKKKGYKVPTPIQRKTMPLILSGV--- 66
Query: 221 RKLFTRRVGDILVNASTGSGKTLAYSVPLVQILRSRTVNK-VRAIILVPTKILIHQVYDC 279
D++ A TGSGKT A+ +P+++ L+ VRA+IL PT+ L Q
Sbjct: 67 ---------DVVAMARTGSGKTAAFLIPMLEKLKQHVPQGGVRALILSPTRDLAEQTLKF 117
Query: 280 LSKLSQGTSLNVSMSKLENSLKEEHNKFLYNSPDILIITPGRLVDHL-QMESFDLKTLKF 338
+L + T L VS+ +S++++ + L PD++I TPGRL+ L +++ L+T+++
Sbjct: 118 TKELGKFTDLRVSLLVGGDSMEDQFEE-LTKGPDVIIATPGRLMHLLSEVDDMTLRTVEY 176
Query: 339 LVLDEADRLLNQSFQNWNQVLFHHLTNDKQDKRPGNVIKMVFSATLTTNAEKLYNLYLHN 398
+V DEAD L F + L+ ++Q ++FSATL + + L
Sbjct: 177 VVFDEADSLFGMGFAEQLHQILTQLSENRQT--------LLFSATLPSALAEFAKAGLRE 228
Query: 399 PKIFLTDSVKLYSIPKKLQELNVNIPTAKSLFKPLLLLRIIHDIKSSASRNAKILVFVKS 458
P++ D S KL L V P K + LL L ++ S + + L+FV +
Sbjct: 229 PQLVRLDVENKISPDLKLSFLTVR-PEEK--YSALLYL-----VREHISSDQQTLIFVST 280
Query: 459 NE------ASIRLESLLHAMLGSGIIEDEYNMFLXXXXXXXXXXXXRKL-IQEFASSEQK 511
+ +LE++ ++ + +D RK+ + F + +K
Sbjct: 281 KHHVEFVNSLFKLENIEPSVCYGDMDQD-----------------ARKIHVSRFRA--RK 321
Query: 512 KSVLISTDIMARGIDINEITHVINYDLPISSQQYVHRCGRTARANTEGIAINLL 565
+LI TDI ARGIDI + +VIN+D P + +VHR GR ARA G A + +
Sbjct: 322 TMLLIVTDIAARGIDIPLLDNVINWDFPPRPKIFVHRVGRAARAGRTGCAYSFV 375
>YLR276c [A] KOG0346 RNA helicase
Length = 594
Score = 125 bits (315), Expect = 1e-28
Identities = 119/433 (27%), Positives = 197/433 (45%), Gaps = 76/433 (17%)
Query: 182 LDARLLKNITSNFSSETFPIQTILFDKVLPLLNSSFKANRKLFTRRVGDILVNASTGSGK 241
LD+RLL+ I + F T++ +PL ++ DI+ A+TGSGK
Sbjct: 24 LDSRLLQAI----KNIGFQYPTLIQSHAIPLA-----------LQQKRDIIAKAATGSGK 68
Query: 242 TLAYSVPLVQIL--RSRTV-----NKVRAIILVPTKILIHQVYDCLSKLSQGTSLNVSMS 294
TLAY +P+++ + +T+ N IILVPT+ L QVY+ L KL S ++
Sbjct: 69 TLAYLIPVIETILEYKKTIDNGEENGTLGIILVPTRELAQQVYNVLEKLVLYCSKDIRTL 128
Query: 295 KLENSLKEE-HNKFLYNSPDILIITPGRLVDHLQ--MESFDLKTLKFLVLDEADRLLNQS 351
+ + + + + L + P+I++ TPG+L+D LQ + S L LKFLV+DE D +L
Sbjct: 129 NISSDMSDSVLSTLLMDQPEIIVGTPGKLLDLLQTKINSISLNELKFLVVDEVDLVLTFG 188
Query: 352 FQNWNQVLFHHLTNDKQDKRPGNVIKMVFSATLTTNAEKLYNLYLHNPKIFLTDSVKLYS 411
+Q+ + +L K N+ + SATL + + L + +P I + ++
Sbjct: 189 YQDDLNKIGEYLPLKK------NLQTFLMSATLNDDIQALKQKFCRSPAILKFNDEEINK 242
Query: 412 IPKKLQELNVNIPTAKSLFKPLLLLRIIHDIKSSASRNAKILVFVKSNEASIRLESLLH- 470
KL + V + S F LL +I + K L+FV + + RL+ ++
Sbjct: 243 NQNKLLQYYVKV----SEFDKFLLCYVIFKLNLI---KGKTLIFVNNIDRGYRLKLVMEQ 295
Query: 471 -----AMLGSGI-------IEDEYN----MFLXXXXXXXXXXXXRKLIQEFASSE----- 509
+L S + I D++N L I+E ++E
Sbjct: 296 FGIKSCILNSELPVNSRQHIVDQFNKNVYQLLIATDDTEYIKEEDDEIEEGHNTENQEEK 355
Query: 510 -------------QKKSVLISTDI---MARGIDINEITHVINYDLPISSQQYVHRCGRTA 553
+KK V + D ++RG+D + V+N+DLP +++ YVHR GRTA
Sbjct: 356 SLEGEPENDKKPSKKKKVQVKKDKEYGVSRGVDFKNVACVLNFDLPTTAKSYVHRVGRTA 415
Query: 554 RANTEGIAINLLV 566
R G AI+ +V
Sbjct: 416 RGGKTGTAISFVV 428
>At2g40700 [A] KOG0348 ATP-dependent RNA helicase
Length = 609
Score = 125 bits (314), Expect = 2e-28
Identities = 112/389 (28%), Positives = 171/389 (43%), Gaps = 57/389 (14%)
Query: 230 DILVNASTGSGKTLAYSVPLVQILRSRTVNKVR-----AIILVPTKILIHQVYDCLSKLS 284
D+LVNA TG+GKT+AY PL+ L+ + R A+++VPT+ L QVY+ L KL
Sbjct: 69 DVLVNAPTGTGKTIAYLAPLIHHLQGHSPKVDRSHGTFALVIVPTRELCLQVYETLEKLL 128
Query: 285 QGTSLNVSMSKLENSLKEEHNKFLYNSPDILIITPGRLVDHLQ-MESFDLKTLKFLVLDE 343
V + K + L ILI TPGRL+DHL+ SF K L++++ DE
Sbjct: 129 HRFHWIVPGYVMGGEKKAKEKARLRKGISILIATPGRLLDHLKNTASFVHKNLRWVIFDE 188
Query: 344 ADRLLNQSFQNWNQVLFHHL------TNDKQDKRPGNVIK--MVFSATLTTNAEKLYNLY 395
AD +L + + + L ++ D P + K ++ SATL L L
Sbjct: 189 ADSILELGYGKEIEQIIKLLGSGQNEQGEEDDIVPKGIQKQNLLLSATLNDKVNDLAKLS 248
Query: 396 LHNPKIFLTDSVKL---------------------------------YSIPKKLQELNVN 422
L +P + D+ KL Y IP +L + +
Sbjct: 249 LDDPVMIGLDNTKLQQNLSIESPAAPDSDAEDMVIHVNKSANPLSEDYGIPSQLVQRYLR 308
Query: 423 IPTAKSLFKPLLLLRIIHDIKSSASRNAKILVFVKSNEASIRLESLLHAMLGSGIIEDEY 482
+P L L +L+ + + ++S K++VF + +A SLL E E
Sbjct: 309 VPCGARLVALLSVLKNLFEREAS----QKVVVFFSTRDAVDFHYSLLSEFQWPPNSETEE 364
Query: 483 NMFLXXXXXXXXXXXXRKLIQEFASS------EQKKSVLISTDIMARGIDINEITHVINY 536
+ QE S +K++VL+STD+ ARG+D ++ +I Y
Sbjct: 365 EGTKELFLKCKTFRLHGSMEQEDRRSAFGTFKTEKQAVLLSTDVAARGLDFPKVRCIIQY 424
Query: 537 DLPISSQQYVHRCGRTARANTEGIAINLL 565
D P + +YVHR GRTAR +G A+ L
Sbjct: 425 DCPGEATEYVHRVGRTARIGEKGEALLFL 453
>SPBC4F6.07c [A] KOG0347 RNA helicase
Length = 648
Score = 125 bits (313), Expect = 3e-28
Identities = 116/411 (28%), Positives = 178/411 (43%), Gaps = 64/411 (15%)
Query: 182 LDARLLKNITSNFSSETFPIQTILFDKVLPLLNSSFKANRKLFTRRVGDILVNASTGSGK 241
L +L +++ S+ PIQ++ V+P + F DI+ A TGSGK
Sbjct: 129 LSPEMLGSLSKAGFSKPMPIQSL----VIPEASIGF------------DIIGKADTGSGK 172
Query: 242 TLAYSVPLVQ-ILRSRTVNKVRAIILVPTKILIHQVYDCLSKLSQGTSLNVSMSKLENSL 300
TLA+ +P+++ LR+ V+A+++ PT+ L HQ+ + ++ V MS
Sbjct: 173 TLAFGIPILEHCLRNVDAKYVQALVVAPTRELAHQICQHFELIKPSPNIRV-MSITGGLA 231
Query: 301 KEEHNKFLYNSPDILIITPGRLVDHLQMESF--DLKTLKFLVLDEADRLLNQSFQNWNQV 358
++ + L P +++ TPGRL + + + K +K LVLDEADRLL +S
Sbjct: 232 VQKQQRLLNKHPHVVVATPGRLWSVINENNLTGNFKKIKCLVLDEADRLLQKSHFEELSK 291
Query: 359 LFHHLTNDKQDKRPGNVIKMVFSATLTT--------NAEKLYNLYLHN----------PK 400
L L N +R + F L N + YN + N PK
Sbjct: 292 LLEILGNPMHTQRQTFIFSATFDEGLQQRLKKNMKGNITEKYNSPMENMLKEVRFFGKPK 351
Query: 401 IFLTDSVKLYSIPKKLQELNVNIPTAKSLFKPLLLLRIIHDIKSSASRNAKILVFVKSNE 460
FL + + + L+ L P K L+ L++R K +VF E
Sbjct: 352 -FLDANPQSAVASRVLEGLIECAPAEKDLYLYYLIMRY----------PGKTMVFANGIE 400
Query: 461 ASIRLESLLHAMLGSGIIEDEYNMFLXXXXXXXXXXXXRKLIQEFAS-SEQKKSVLISTD 519
R+ L N +K +Q K VL+ TD
Sbjct: 401 DIKRITPFL-------------NELKVPSYPLHAQLDQKKRLQSLEKFKNNPKGVLVCTD 447
Query: 520 IMARGIDINEITHVINYDLPISSQQYVHRCGRTARANTEGIAINLLVGKGE 570
+ ARGIDI +THVI+Y +P ++ YVHR GRTARAN +G++I L+ G E
Sbjct: 448 VAARGIDIPSVTHVIHYHVPHTADMYVHRSGRTARANEDGVSI-LMCGPKE 497
>YFL002c [A] KOG0345 ATP-dependent RNA helicase
Length = 606
Score = 124 bits (310), Expect = 6e-28
Identities = 106/358 (29%), Positives = 169/358 (46%), Gaps = 35/358 (9%)
Query: 230 DILVNASTGSGKTLAYSVPLVQILRSRTVNKVR-------AIILVPTKILIHQVYDC-LS 281
D++V++ TGSGKT A+ +P+++ + N + ++I+ PT+ L Q+ LS
Sbjct: 46 DVVVDSVTGSGKTAAFVIPVLEKVVKEEANTSKFKKAHFHSLIIAPTRELSRQIESVVLS 105
Query: 282 KLSQGTS------LNVSMSKLENSLKEEHNKFLYNSPDILIITPGRLVDHLQMESFDLKT 335
L S + + E +++++ + FL N P ILI TPGR++D LQM +
Sbjct: 106 FLEHYPSDLFPIKCQLLVGTNEATVRDDVSNFLRNRPQILIGTPGRVLDFLQMPAVKTSA 165
Query: 336 LKFLVLDEADRLLNQSFQNWNQVLFHHLTNDKQDKRPGNVIKMVFSATLTTNAEKLYNLY 395
+V+DEADRLL+ SF + + L + +R G +FSAT+ + ++
Sbjct: 166 CSMVVMDEADRLLDMSFIKDTEKILRLLP---KQRRTG-----LFSATMRSAGSDIFKTG 217
Query: 396 LHNPKIFLTDSVKLYSIPKKLQELNVNIPTAKSLFKPLLLLRIIHDIKSSASRNAKILVF 455
L NP +S KL VN P K LL+ I+++ K K +V+
Sbjct: 218 LRNPVRITVNSKNQAPSSLKLNYCVVN-PAEKLQ----LLVSILNNYKFK-----KCIVY 267
Query: 456 VKSNEASIRLESLLHAMLGSGIIEDEYNMFLXXXXXXXXXXXXRKLIQEFASSEQKKSVL 515
+ + S + + I+ +E +F K + F S SVL
Sbjct: 268 FPTCVSVSYFYSFIQYLGKRNILVNEVEIF--SLHGKLQTSARTKTLTAFTDS-LSNSVL 324
Query: 516 ISTDIMARGIDINEITHVINYDLPISSQQYVHRCGRTARANTEGIAINLLVGKGEQKF 573
+TD+ ARGIDI ++ VI D P ++ ++HRCGRT RAN G AI L E+ F
Sbjct: 325 FTTDVAARGIDIPDVDLVIQLDPPTNTDMFMHRCGRTGRANRVGKAITFLNEGREEDF 382
>ECU10g0440 [A] KOG0330 ATP-dependent RNA helicase
Length = 400
Score = 124 bits (310), Expect = 6e-28
Identities = 102/363 (28%), Positives = 176/363 (48%), Gaps = 36/363 (9%)
Query: 229 GDILVNASTGSGKTLAYSVPLVQILRSRTVNKVRAIILVPTKILIHQVYDCLSKLSQGTS 288
GD++ + TGSGKTLA+ +P+V L + +++ PT+ L Q+ +C + + Q T
Sbjct: 39 GDVIAVSQTGSGKTLAFVLPIVSHLLQKN-RSFYCLVVAPTRELSSQIAECFN-MFQATG 96
Query: 289 LNVSMSKLENSLKEEHNKFLYNSPDILIITPGRLVDH-LQMESFDLKTLKFLVLDEADRL 347
L V + + + N+ L P +++ TPGR+ +H L+ +SF + ++ VLDEADR
Sbjct: 97 LRVCLLVGGANFNVQANQ-LSKRPHVVVGTPGRIAEHVLKTKSFRTERVRKFVLDEADRF 155
Query: 348 LNQSFQNWNQVLFHHLTNDKQDKRPGNVIKMVFSATLTTNAEKLYNLYLHNPKIFLTDSV 407
Q F + + L +Q ++F+AT++ KL + L PK T
Sbjct: 156 FEQDFVEDLETIIPSLREKRQT--------LLFTATMSDEISKLSSSILKRPKTIRT--A 205
Query: 408 KLYSIPKKLQELNVNIPTAKSLFKPLLLLRIIHDIKSSASRNAKILVFVKSNEASIRLES 467
+ Y L+E + + +K L+ ++ S+ ++VFV S + R+ S
Sbjct: 206 EKYETVPALKEYYLFVAMK---WKNSALVELLE-----MSQGMSVIVFV-SMCVTARVMS 256
Query: 468 LLHAMLGSGIIEDEYNMFLXXXXXXXXXXXXRKLIQEFASSEQKKSVLISTDIMARGIDI 527
L A LG F R+ + E + +VL+ TD+ +RG+DI
Sbjct: 257 LALARLG----------FCSEALHGELSQEKREEAMR-SFKESRFNVLVCTDLGSRGLDI 305
Query: 528 NEITHVINYDLPISSQQYVHRCGRTARANTEGIAINLLVGKGEQKFWSQHIDTDLSRDID 587
+ + VIN+D+P S + Y+HR GRTARA G AI L+ ++ Q I+ L + ++
Sbjct: 306 SHVDLVINFDVPKSGKDYIHRVGRTARAGRSGTAITLVTQYDVEQI--QKIEFTLEKKLE 363
Query: 588 GYQ 590
++
Sbjct: 364 EFK 366
>At5g60990 [A] KOG0330 ATP-dependent RNA helicase
Length = 454
Score = 124 bits (310), Expect = 6e-28
Identities = 109/365 (29%), Positives = 176/365 (47%), Gaps = 49/365 (13%)
Query: 215 SSFKANRKLFTRRVGDILVNASTGSGKTLAYSVPLVQILRSRTVNKVR-----------A 263
S +A F D++ A TGSGKT A+++P++Q L + A
Sbjct: 33 SKIQAEALPFALEGKDVIGLAQTGSGKTGAFAIPILQALLEYVYDSEPKKGRRPDPAFFA 92
Query: 264 IILVPTKILIHQVYDCLSKLSQGTSLNVSMSKLENSL-KEEHNKFLYNSPDILIITPGRL 322
+L PT+ L Q+ + L G +++ + L + + + L P + TPGRL
Sbjct: 93 CVLSPTRELAIQIAEQFEAL--GADISLRCAVLVGGIDRMQQTIALGKRPHVA--TPGRL 148
Query: 323 VDHLQ-MESFDLKTLKFLVLDEADRLLNQSFQ-NWNQVLFHHLTNDKQDKRPGNVIKMVF 380
DH+ + F LK+LK+LVLDEADRLLN+ F+ + NQ+L ++ P +F
Sbjct: 149 WDHMSDTKGFSLKSLKYLVLDEADRLLNEDFEKSLNQIL---------EEIPLERKTFLF 199
Query: 381 SATLTTNAEKLYNLYLHNPKIFLTDSVKLYSIPKKLQELNVNIPTAKSLFKPLLLLRIIH 440
SAT+T KL L NP ++ YS L++ AK +K L+ I+
Sbjct: 200 SATMTKKVRKLQRACLRNP--VKIEAASKYSTVDTLKQ-QYRFVAAK--YKDCYLVYILS 254
Query: 441 DIKSSASRNAKILVFVKSNEASIRLESLLHAMLGSGIIEDEYNMFLXXXXXXXXXXXXRK 500
++ S S ++F ++ + + R +L+ LG I M
Sbjct: 255 EMPESTS-----MIFTRTCDGT-RFLALVLRSLGFRAIPISGQMTQSKRLGA-------- 300
Query: 501 LIQEFASSEQKKSVLISTDIMARGIDINEITHVINYDLPISSQQYVHRCGRTARANTEGI 560
+ +F + E ++L+ TD+ +RG+DI + VINYD+P +S+ Y+HR GRTARA G+
Sbjct: 301 -LNKFKAGEC--NILVCTDVASRGLDIPSVDVVINYDIPTNSKDYIHRVGRTARAGRSGV 357
Query: 561 AINLL 565
I+L+
Sbjct: 358 GISLV 362
>At2g42520 [A] KOG0335 ATP-dependent RNA helicase
Length = 633
Score = 124 bits (310), Expect = 6e-28
Identities = 101/344 (29%), Positives = 167/344 (48%), Gaps = 35/344 (10%)
Query: 230 DILVNASTGSGKTLAYSVPLVQ-ILRSRTVNKVR--------AIILVPTKILIHQVYDCL 280
D++ A TGSGKT A+ P++ I++ + V + R A+IL PT+ L Q++D
Sbjct: 198 DLMACAQTGSGKTAAFCFPIISGIMKDQHVQRPRGSRTVYPLAVILSPTRELASQIHDEA 257
Query: 281 SKLSQGTSLNVSMSKLENSLKEEHNKFLYNSPDILIITPGRLVDHLQMESFDLKTLKFLV 340
K S T + V ++ + ++ + L DIL+ TPGRL D L+ ++ ++FL
Sbjct: 258 KKFSYQTGVKVVVAYGGTPINQQLRE-LERGVDILVATPGRLNDLLERARVSMQMIRFLA 316
Query: 341 LDEADRLLNQSFQNWNQVLFHHLTNDKQDKRPGNVIK-MVFSATLTTNAEKLYNLYLHNP 399
LDEADR+L+ F+ + + ++ D P V + ++FSAT ++L +L N
Sbjct: 317 LDEADRMLDMGFEPQIRKIV-----EQMDMPPRGVRQTLLFSATFPREIQRLAADFLAN- 370
Query: 400 KIFLTDSVKLYSIPKKLQELNVNIPTAKSLFKPLLLLRIIHDIKSSA--SRNAKILVFVK 457
IFL S +Q + + + K L+ ++H + + + A LVFV+
Sbjct: 371 YIFLAVGRVGSSTDLIVQRVEFVLDSDKRSH----LMDLLHAQRENGIQGKQALTLVFVE 426
Query: 458 SNEASIRLESLLHAMLGSGIIEDEYNMFLXXXXXXXXXXXXRKLIQEFASSEQKKSVLIS 517
+ + LE+ L N F R++ + A + +L++
Sbjct: 427 TKRGADSLENWLCI-----------NGFPATSIHGDRTQQEREVALK-AFKSGRTPILVA 474
Query: 518 TDIMARGIDINEITHVINYDLPISSQQYVHRCGRTARANTEGIA 561
TD+ ARG+DI + HV+N+DLP YVHR GRT RA G+A
Sbjct: 475 TDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLA 518
>7294797 [A] KOG0339 ATP-dependent RNA helicase
Length = 791
Score = 124 bits (310), Expect = 6e-28
Identities = 102/349 (29%), Positives = 171/349 (48%), Gaps = 39/349 (11%)
Query: 230 DILVNASTGSGKTLAYSVPLVQILRSRTVNKVR----AIILVPTKILIHQVYDCLSKLSQ 285
DI+ A TGSGKT A+ P++ + + K +IL PT+ L Q+Y+ K +
Sbjct: 308 DIIGIAKTGSGKTAAFIWPMLMHVMDQKQLKPGDGPIGLILAPTRELSLQIYNEAKKFGK 367
Query: 286 GTSLNVSMSKLENSLKEEHNKFLYNSPDILIITPGRLVDHLQMESFDLKTLKFLVLDEAD 345
+LNV S K E +K L +I++ TPGR++D ++M++ +L+ + FLVLDEAD
Sbjct: 368 VYNLNVVCCYGGGS-KWEQSKALEQGAEIIVATPGRMIDMVKMKATNLRRVTFLVLDEAD 426
Query: 346 RLLNQSFQNWNQVLFHHLTNDKQDKRPGNVIKMVFSATLTTNAEKLYNLYLHNPKIFLTD 405
R+ + F+ + + +H+ D+Q ++FSAT E+L + L+D
Sbjct: 427 RMFHMGFEPQVRSICNHVRPDRQ--------CLMFSATFKKRIERL-------ARDVLSD 471
Query: 406 SVKLYSIPKKLQELNVNIPTAKSLF-KPLLLLR--IIHDIKSSASRNAKILVFVKSNEAS 462
V++ + L E N +I + +F PL + H +K + + I V K + +
Sbjct: 472 PVRI--VQGDLNEANQDITQSVYVFPNPLQKWNWLLCHLVKFLSEGSVLIFVTKKVDAET 529
Query: 463 IRLESLLHAMLGSGIIEDEYNMFLXXXXXXXXXXXXRKLIQEFASSEQKKSVLISTDIMA 522
+ + ++ EYN L K+I +F E +L++TD+ A
Sbjct: 530 V----------SNNLLIKEYNCLL--LHGDMDQADRNKVITQFKRKE--CDILVATDVAA 575
Query: 523 RGIDINEITHVINYDLPISSQQYVHRCGRTARANTEGIAINLLVGKGEQ 571
RG+DI I +V+NYD + + HR GRT RA +G A L+ K ++
Sbjct: 576 RGLDIPHIRNVVNYDTARDIETHTHRIGRTGRAGEKGNAYTLVTDKDKE 624
>7293941 [A] KOG0344 ATP-dependent RNA helicase
Length = 594
Score = 124 bits (310), Expect = 6e-28
Identities = 134/464 (28%), Positives = 201/464 (42%), Gaps = 56/464 (12%)
Query: 114 SSDNDVHDEDVSMKDVHSLTPIPQPAKVTNEALKLLDPSTY---KSTAWDAATKIHYDSK 170
S ++D DED++ + QP + + K L P K+ T+ Y +
Sbjct: 45 SEESDKDDEDITEFRLLDGDSSNQPKRKKPKKEKTLSPKELEIQKAAEEANETRKQYGIR 104
Query: 171 MVKQ-----FDSYEGEL--DARLLKNITSNFSSETFPIQTILFDKVLPLLNSSFKANRKL 223
++ + DS+ G L D ++L + N S F T + + LP+L
Sbjct: 105 VLGKNVPPPVDSF-GTLTRDFKMLPRLQQNLLSRNFDHPTPIQMQALPVL---------- 153
Query: 224 FTRRVGDILVNASTGSGKTLAYSVPLVQILRSRTVNKVRAIILVPTKILIHQVYDCLSKL 283
RR ++ A TGSGKTLA+ P++ LR+ +RA++L PT+ L Q+Y ++L
Sbjct: 154 LQRRA--LMACAPTGSGKTLAFLTPIINGLRAHKTTGLRALVLAPTRELAQQIYRECAEL 211
Query: 284 SQGTSLNVSMSKLENSLKEEHNKFLYNSPDILIITPGRLVDHLQMES--FDLKTLKFLVL 341
++ T L + K++H DIL+ TP R+ LQ E DL +++ VL
Sbjct: 212 TRETGLRTHFISKVSEAKQKHGAECKQRYDILVSTPNRVRFLLQQEPPLLDLSHVEWFVL 271
Query: 342 DEADRLLNQSFQNWNQVLFHHLTNDKQDKRPGNVIKMV--FSATLTTNAEKLYNLYLHNP 399
DEADRL+ + N+ + L D N K V FSAT T K +L N
Sbjct: 272 DEADRLMEEGQNNFKEQL------DDIYAACSNPTKCVAFFSATYTVPVAKWALRHLKN- 324
Query: 400 KIFLTDSVKLYSIPKKLQELNVNIPTAKSLFKPLLLLRIIHDIKSSASRNAKILVFVKSN 459
+ +T V+ + QEL L L+R +LVFV+S
Sbjct: 325 LVRITIGVQNSATETVQQELLFVGSEGGKLVAIRDLVR--------QGLQPPVLVFVQSK 376
Query: 460 EASIRL-ESLLHAMLGSGIIEDEYNMFLXXXXXXXXXXXXRKLIQEFASSEQKKSVLIST 518
E + +L E LL+ + +I E + A E VLI T
Sbjct: 377 ERAKQLFEELLYDGINVDVIHAERSQHQRDNCVK-------------AFREGSIWVLICT 423
Query: 519 DIMARGIDINEITHVINYDLPISSQQYVHRCGRTARANTEGIAI 562
++M RGID + VINYD P ++ Y+HR GRT RA G AI
Sbjct: 424 ELMGRGIDFKGVNLVINYDFPPTTISYIHRIGRTGRAGRPGRAI 467
>At3g58570 [A] KOG0335 ATP-dependent RNA helicase
Length = 646
Score = 123 bits (309), Expect = 7e-28
Identities = 99/344 (28%), Positives = 167/344 (47%), Gaps = 35/344 (10%)
Query: 230 DILVNASTGSGKTLAYSVPLVQ-ILRSRTVNKVR--------AIILVPTKILIHQVYDCL 280
D++ A TGSGKT A+ P++ I++ + + + R A+IL PT+ L Q++D
Sbjct: 185 DLMACAQTGSGKTAAFCFPIISGIMKDQHIERPRGVRGVYPLAVILSPTRELACQIHDEA 244
Query: 281 SKLSQGTSLNVSMSKLENSLKEEHNKFLYNSPDILIITPGRLVDHLQMESFDLKTLKFLV 340
K S T + V ++ + ++ + L DIL+ TPGRL D L+ L+ ++FL
Sbjct: 245 RKFSYQTGVKVVVAYGGTPVNQQIRE-LERGVDILVATPGRLNDLLERGRVSLQMVRFLA 303
Query: 341 LDEADRLLNQSFQNWNQVLFHHLTNDKQDKRPGNVIKMVFSATLTTNAEKLYNLYLHNPK 400
LDEADR+L+ F+ + + + PG M+FSAT ++L + +L N
Sbjct: 304 LDEADRMLDMGFEPQIRKIVQQMDMPP----PGVRQTMLFSATFPREIQRLASDFLSN-Y 358
Query: 401 IFLTDSVKLYSIPKKLQELNVNIPTAKSLFKPLLLLRIIHDIKSSAS--RNAKILVFVKS 458
IFL + + + + K L+ ++H + + + + A LVFV++
Sbjct: 359 IFLA----VGRVGSSTDLIVQRVEFVHDSDKRSHLMDLLHAQRENGNQGKQALTLVFVET 414
Query: 459 NEASIRLESLLHAMLGSGIIEDEYNMFLXXXXXXXXXXXXRKL-IQEFASSEQKKSVLIS 517
+ + LE+ L N F R++ ++ F + + +L++
Sbjct: 415 KKGADSLENWLCI-----------NGFPATTIHGDRSQQEREVALRSFKTG--RTPILVA 461
Query: 518 TDIMARGIDINEITHVINYDLPISSQQYVHRCGRTARANTEGIA 561
TD+ ARG+DI + HV+N+DLP YVHR GRT RA G+A
Sbjct: 462 TDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGNSGLA 505
>7290853 [A] KOG0331 ATP-dependent RNA helicase
Length = 945
Score = 123 bits (308), Expect = 1e-27
Identities = 99/339 (29%), Positives = 168/339 (49%), Gaps = 30/339 (8%)
Query: 230 DILVNASTGSGKTLAYSVP-LVQILRSRTVNKVR---AIILVPTKILIHQVYDCLSKLSQ 285
D++ A TGSGKTLAY +P +V I + + A++L PT+ L Q+ +
Sbjct: 276 DLVGIAQTGSGKTLAYMLPAIVHIGNQPPIIRGEGPIALVLAPTRELAQQIQSVVRDYGH 335
Query: 286 GTSLNVSMSKL-ENSLKEEHNKFLYNSPDILIITPGRLVDHLQMESFDLKTLKFLVLDEA 344
+ + + S K + L +++I TPGRL+D L+ + +L+ +LVLDEA
Sbjct: 336 LCKPEIRHTCIFGGSSKVPQARDLDRGVEVIIATPGRLIDFLENRNTNLQRCTYLVLDEA 395
Query: 345 DRLLNQSFQNWNQVLFHHLTNDKQDKRPGNVIKMVFSATLTTNAEKLYNLYLHNPKIFLT 404
DR+L+ F+ + + + D+Q +++SAT + L +L++
Sbjct: 396 DRMLDMGFEPQIRKIIEQIRPDRQ--------VVMWSATWPKEVQALAGDFLNDYIQINI 447
Query: 405 DSVKLYSIP--KKLQELNVNIPTAKSLFKPLLLLRIIHDIKSSASRNAKILVFVKSNEAS 462
S+ L + +++ E+ I + L + LL I IK+S + KI+VFV E
Sbjct: 448 GSMNLSANHNIRQIVEICTEIEKPQRL---VCLLNEISPIKNSGNNGNKIIVFV---ETK 501
Query: 463 IRLESLLHAMLGSGIIEDEYNMFLXXXXXXXXXXXXRKLIQEFASSEQKKSVLISTDIMA 522
I++E +L + G YN ++++F + K ++LI+TD+ +
Sbjct: 502 IKVEDILQIIRAEG-----YNA--TSIHGDKTQNERDSVLKDFRNG--KSNILIATDVAS 552
Query: 523 RGIDINEITHVINYDLPISSQQYVHRCGRTARANTEGIA 561
RG+D+ ++ +VINYD P SS+ YVHR GRT R G A
Sbjct: 553 RGLDVEDLQYVINYDYPNSSENYVHRIGRTGRCQQLGTA 591
>At4g34910 [A] KOG0346 RNA helicase
Length = 626
Score = 122 bits (307), Expect = 1e-27
Identities = 122/430 (28%), Positives = 200/430 (46%), Gaps = 55/430 (12%)
Query: 230 DILVNASTGSGKTLAYSVPLVQILRSR-TVNKVR----AIILVPTKILIHQVYDCLSKLS 284
D++ A TGSGKTLAY +PL+Q L S +V+K + A ILVP++ L QVY +S L
Sbjct: 85 DVVARAKTGSGKTLAYLLPLLQKLFSADSVSKKKLAPSAFILVPSRELCQQVYTEVSSLI 144
Query: 285 QGTSLNVSMSKLENSLK-EEHNKFLYNSPDILIITPGRLVDHLQMESFD----LKTLKFL 339
+ + + +L +S+ + L P+IL+ TP + + ++L L
Sbjct: 145 ELCRVQLKAVQLTSSMSASDMRNALAGLPEILVSTPACIPKCFAAGVLEPTAVSESLSIL 204
Query: 340 VLDEADRLLNQSFQNWNQVLFHHLTNDKQDKRPGNVIKMVFSATLTTNAEKLYNLYLHNP 399
VLDEAD LL+ +++ + + + P ++ SAT +++ EKL L LHNP
Sbjct: 205 VLDEADLLLSYGYEDNLRSVTSII--------PRRCQCLLMSATTSSDVEKLKKLILHNP 256
Query: 400 KIFLT---DSVKLYSIPKKLQELNVNIPTAKSLFKPLLLLRIIHDIKSSASRNAKILVFV 456
I LT D+ K ++P +Q+ ++ L L LL++ K KIL+F+
Sbjct: 257 -IVLTLTEDNDKEEAVPSNVQQFWISCSAQDKLLHILALLKLEVVQK-------KILIFI 308
Query: 457 KSNEASIRLESLLH------AMLGSGI-------IEDEYNMFLXXXXXXXXXXXXRKLIQ 503
+ + RL+ L A+L + I +++N L K +
Sbjct: 309 NTIDMGFRLKLFLEKFGIKSAILNGELPQNSRLHILEQFNAGLFDYLIATDDNSQTKKQK 368
Query: 504 EFASSE----------QKKSVLISTDIMARGIDINEITHVINYDLPISSQQYVHRCGRTA 553
E A E + K L + + RGID ++ VIN+D+P S Y+HR GRT
Sbjct: 369 EEAKGEANKENKKNNKRSKPKLDAEFGVVRGIDFKKVHTVINFDMPQSVTGYIHRIGRTG 428
Query: 554 RANTEGIAINLLVGKGEQKF--WSQHIDTDLSRDIDGYQPSAYLDEEKLSEL-FSIEDTL 610
RA + G +++L+ + F + +D ++DID P L E + L + ED
Sbjct: 429 RAYSSGSSVSLISPDEMEGFEDIKSFLASDKNKDIDIITPFPLLTENAVESLRYRAEDVA 488
Query: 611 KDTYKGCIKQ 620
K K +++
Sbjct: 489 KSVTKIAVRE 498
>SPAC31A2.07c [A] KOG0337 ATP-dependent RNA helicase
Length = 848
Score = 122 bits (306), Expect = 2e-27
Identities = 110/358 (30%), Positives = 164/358 (45%), Gaps = 37/358 (10%)
Query: 230 DILVNASTGSGKTLAYSVPLVQILRSRTVNK-VRAIILVPTKILIHQVYDCLSKLSQGTS 288
D++ A TGSGKT A+ +P+++ L+S N RA+IL P + L Q + S+GT
Sbjct: 108 DVVGMARTGSGKTAAFVIPMIEHLKSTLANSNTRALILSPNRELALQTVKVVKDFSKGTD 167
Query: 289 LNVSMSKLENSLKEEHNKFLYNSPDILIITPGRLVDHLQME-SFDLKTLKFLVLDEADRL 347
L S++ + EE L PDI++ TPGR + HL++E +L +++++V DEADRL
Sbjct: 168 LR-SVAIVGGVSLEEQFSLLSGKPDIVVATPGRFL-HLKVEMKLELSSIEYVVFDEADRL 225
Query: 348 LNQSFQNWNQVLFHHLTNDKQDKRPGNVIKMVFSATLTTNAEKLYNLYLHNPKIFLTDSV 407
F + H L +Q ++FSATL L +P + D
Sbjct: 226 FEMGFAAQLTEILHALPTSRQT--------LLFSATLPRTLVDFAKAGLQDPVLVRLDVE 277
Query: 408 KLYSIPKKLQELNVNIPTAKSLFKPLLLLRIIHDI-KSSASRNAKILVFVKSNEASIRLE 466
+ LQ ++ TA+ + LL I+ DI K N + N R
Sbjct: 278 S--KVSADLQSAFFSVKTAE---REAALLCILQDIIKLPLKDNVRPREIGNVNNPKKRKR 332
Query: 467 SLLHAMLGS--GIIED-----------EYNMFLXXXXXXXXXXXXRKLIQEFASSE---- 509
+L A+ GS G + EY L L QE +E
Sbjct: 333 ALELALKGSESGSPDSTLVFVPTKHHVEYVSELLVQAGYSVSKIYGSLDQEARLNEINNF 392
Query: 510 --QKKSVLISTDIMARGIDINEITHVINYDLPISSQQYVHRCGRTARANTEGIAINLL 565
K ++L+ TD+ +RGIDI + +VINYD P + +VHR GRTARA G A +L+
Sbjct: 393 RLGKTNLLVVTDVASRGIDIPLLANVINYDFPPQPKVFVHRVGRTARAGRTGWAYSLV 450
>At1g16280 [A] KOG0340 ATP-dependent RNA helicase
Length = 491
Score = 122 bits (306), Expect = 2e-27
Identities = 105/379 (27%), Positives = 181/379 (47%), Gaps = 38/379 (10%)
Query: 230 DILVNASTGSGKTLAYSVPLVQILRSRTVNKVRAIILVPTKILIHQVYDCLSKLSQGTSL 289
D+L A TGSGKT A+++P++ L V A+++ PT+ L Q+ + L G+ L
Sbjct: 97 DVLGLAQTGSGKTAAFALPILHRLAEDPYG-VFALVVTPTRELAFQLAEQFKAL--GSCL 153
Query: 290 NVSMSKLENSLKE-EHNKFLYNSPDILIITPGRLVDHLQMESFDLKTL----KFLVLDEA 344
N+ S + + L + P I+I TPGR+ L+ D+ + KFLVLDEA
Sbjct: 154 NLRCSVIVGGMDMLTQTMSLVSRPHIVITTPGRIKVLLENNP-DVPPVFSRTKFLVLDEA 212
Query: 345 DRLLNQSFQNWNQVLFHHLTNDKQDKRPGNVIKMVFSATLTTNAEKLYNLYLHNPKIFLT 404
DR+L+ FQ+ + +F L +Q ++FSAT+T+N + L + N F
Sbjct: 213 DRVLDVGFQDELRTIFQCLPKSRQT--------LLFSATMTSNLQALLE-HSSNKAYFYE 263
Query: 405 DSVKLYSIPKKLQELNVNIPTAKSLFKPLLLLRIIHDIKSSASRNAKILVFVKSNEASIR 464
L ++ Q+ AK L+ L+ I+ ++ R+A ++FV + R
Sbjct: 264 AYEGLKTVDTLTQQFIFEDKDAKELY----LVHILSQMEDKGIRSA--MIFVSTCRTCQR 317
Query: 465 LESLLHAMLGSGIIEDEYNMFLXXXXXXXXXXXXRKLIQEFASSEQKKSVLISTDIMARG 524
L +L DE + + +F S K +L++TD+ +RG
Sbjct: 318 LSLML----------DELEVENIAMHSLNSQSMRLSALSKFKSG--KVPILLATDVASRG 365
Query: 525 IDINEITHVINYDLPISSQQYVHRCGRTARANTEGIAINLLVGKGEQKFWSQHIDTDLSR 584
+DI + VINYD+P + YVHR GRTARA G+A++++ + I+ ++ +
Sbjct: 366 LDIPTVDLVINYDIPRDPRDYVHRVGRTARAGRGGLAVSIITETDVKLI--HKIEEEVGK 423
Query: 585 DIDGYQPSAYLDEEKLSEL 603
++ Y D +++++
Sbjct: 424 KMEPYNKKVITDSLEVTKV 442
>7295314 [A] KOG0331 ATP-dependent RNA helicase
Length = 811
Score = 122 bits (306), Expect = 2e-27
Identities = 97/347 (27%), Positives = 165/347 (46%), Gaps = 31/347 (8%)
Query: 230 DILVNASTGSGKTLAYSVPLVQIL----RSRTVNKVRAIILVPTKILIHQVYDCLSKLSQ 285
D++ A TGSGKTLAY +P V + R + A++L PT+ L Q+ +
Sbjct: 189 DLVGVAQTGSGKTLAYVLPAVVHINNQPRLERGDGPIALVLAPTRELAQQIQQVAIEFGS 248
Query: 286 GTSLNVSMSKLENSLKEEHNKFLYNSPDILIITPGRLVDHLQMESFDLKTLKFLVLDEAD 345
T + + + K + + L +I+I TPGRL+D L+ + LK +LVLDEAD
Sbjct: 249 NTHVR-NTCIFGGAPKGQQARDLERGVEIVIATPGRLIDFLERGTTSLKRCTYLVLDEAD 307
Query: 346 RLLNQSFQNWNQVLFHHLTNDKQDKRPGNVIKMVFSATLTTNAEKLYNLYLHNPKIFLTD 405
R+L+ F+ + + + D+Q +++SAT +L +L+N
Sbjct: 308 RMLDMGFEPQIRKIMQQIRPDRQ--------VLMWSATWPKEVRQLAEEFLNNYIQVNIG 359
Query: 406 SVKLYSIPKKLQELNVNIPTAKSLFKPLLLLRIIHDIKSSASRNAKILVFVKSNEASIRL 465
S+ L + LQ ++V K + L++++ DI SA K ++FV++ + R+
Sbjct: 360 SLSLSANHNILQIVDV----CDENEKLMKLIKLLTDI--SAENETKTIIFVETKK---RV 410
Query: 466 ESLLHAMLGSGIIEDEYNMFLXXXXXXXXXXXXRKLIQEFASSEQKKSVLISTDIMARGI 525
+ + + G + R + + + S+L++TD+ ARG+
Sbjct: 411 DEITRNISRQG--------WRACAIHGDKSQQERDFVLS-SFRNGRHSILVATDVAARGL 461
Query: 526 DINEITHVINYDLPISSQQYVHRCGRTARANTEGIAINLLVGKGEQK 572
D++++ VINYD P +S+ YVHR GRT R+N G A L K
Sbjct: 462 DVDDVKFVINYDYPSNSEDYVHRIGRTGRSNNTGTAYTLFTHSNANK 508
>CE01341 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 402
Score = 121 bits (304), Expect = 3e-27
Identities = 88/337 (26%), Positives = 169/337 (50%), Gaps = 33/337 (9%)
Query: 230 DILVNASTGSGKTLAYSVPLVQILRSRTVNKVRAIILVPTKILIHQVYDCLSKLSQGTSL 289
D++ A +G+GKT +SV ++Q + + V+A+++ PT+ L Q+ +S L + ++
Sbjct: 68 DVIAQAQSGTGKTATFSVSILQRIDHEDPH-VQALVMAPTRELAQQIQKVMSALGEYLNV 126
Query: 290 NVSMSKLENSLKEEHNKFLYNSPDILIITPGRLVDHLQMESFDLKTLKFLVLDEADRLLN 349
N+ S++++ K L +++ TPGR+ D + + D +K VLDEAD +L+
Sbjct: 127 NILPCIGGTSVRDDQRK-LEAGIHVVVGTPGRVGDMINRNALDTSRIKMFVLDEADEMLS 185
Query: 350 QSFQNWNQVLFHHLTNDKQDKRPGNVIKMVFSATLTTNAEKLYNLYLHNPKIFLTDSVKL 409
+ F++ +F + D Q ++ SAT+ + + N ++ NP L +L
Sbjct: 186 RGFKDQIYEVFRSMPQDVQ--------VVLLSATMPSEVLDVTNRFMRNPIRILVKKDEL 237
Query: 410 YSIPKKLQELNVNIPTAKSLFKPLLLLRIIHDIKSSASRNAKILVFVKSNEASIRLESLL 469
+ +++ +N+ + F L L + ++ + ++F + ++++L
Sbjct: 238 --TLEGIRQFYINVQKDEWKFDCLCDLYNVVNV-------TQAVIFCNTRR---KVDTLT 285
Query: 470 HAMLGSGIIEDEYNMFLXXXXXXXXXXXXR-KLIQEFASSEQKKSVLISTDIMARGIDIN 528
M N F R +++EF S + VLI+TDI+ARGID+
Sbjct: 286 EKM--------TENQFTVSCLHGDMDQAERDTIMREFRSGSSR--VLITTDILARGIDVQ 335
Query: 529 EITHVINYDLPISSQQYVHRCGRTARANTEGIAINLL 565
+++ VINYDLP + + Y+HR GR+ R +G+AIN +
Sbjct: 336 QVSLVINYDLPSNRENYIHRIGRSGRFGRKGVAINFV 372
>ECU02g0670 [A] KOG0335 ATP-dependent RNA helicase
Length = 503
Score = 121 bits (303), Expect = 4e-27
Identities = 118/427 (27%), Positives = 196/427 (45%), Gaps = 60/427 (14%)
Query: 147 KLLDPSTYKSTAWDAATKIHYDSKMVKQFDSYEGELDARLLKNITSNFSSETFPIQTILF 206
K+ DP + A D K+ S+ VK S++ L+K + +S+ T I+
Sbjct: 73 KVKDPDSV--AAADGDIKV-VTSEKVKTLSSFKDLCSPLLIKALGKEYSAPT-----IIQ 124
Query: 207 DKVLPLLNSSFKANRKLFTRRVGDILVNASTGSGKTLAYSVPLVQILRSRTVNKVRAIIL 266
+P S R L R A TG GKT+ + +P+++ R R + K +A I+
Sbjct: 125 KYCIP----SLVDGRNLICR--------APTGMGKTMCFLIPIIE--RHRQMKKPQACII 170
Query: 267 VPTKILIHQVYDCLSKLSQGTSLNV-SMSKLENSLKEEHNKFLYNSPDILIITPGRLVDH 325
PT+ L Q+ SKL G+ + V S+ + L Y+ DI++ TPGRL+D
Sbjct: 171 SPTRELCEQIRVEASKLVAGSRIRVVSIYGKKQDLPS------YSGVDIVVATPGRLIDL 224
Query: 326 LQMESFDLKTLKFLVLDEADRLLNQSFQNWNQVLFHHLTNDKQDKRPGNVIKMVFSATLT 385
L + DL ++ VLDEAD+LL+ F+ + + + P N +FSAT +
Sbjct: 225 LHRKKVDLSEIRMFVLDEADKLLDMGFEIPIREIHGFV--------PKNTQTCLFSATYS 276
Query: 386 TNAEKLYNLYLHNPKIFLTDSVKLYSIPKKLQELNVNIPTAKSLFKPLLLLRIIHDIKSS 445
++ N +L K+ S+++ S + L+ + I ++ K LL + DI
Sbjct: 277 PKLTRMINYFLPEDKV----SIEISS--ETLKNIRQEIVEVRNKKKMLLNILKGPDINLK 330
Query: 446 AS-----RNAKILVFVKSNEASIRLESLLHAMLGSGIIEDEYNMFLXXXXXXXXXXXXRK 500
S + K+LVFV+ +E +L SGI+ +
Sbjct: 331 GSWRMEVQPDKVLVFVERKSECGEVEKVLKK---SGIL-------CVSLHGDKEQADRDE 380
Query: 501 LIQEFASSEQKKSVLISTDIMARGIDINEITHVINYDLPISSQQYVHRCGRTARANTEGI 560
++ F + + V+++T + ARGIDI ++ VINYD+P ++Y+HR GRT R G
Sbjct: 381 ALKGFRNG--RFPVMVATSVAARGIDIKDVKLVINYDIPKDIKEYIHRIGRTGREGKSGK 438
Query: 561 AINLLVG 567
+I+ G
Sbjct: 439 SISFYDG 445
>At3g18600 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 568
Score = 121 bits (303), Expect = 4e-27
Identities = 102/342 (29%), Positives = 169/342 (48%), Gaps = 34/342 (9%)
Query: 230 DILVNASTGSGKTLAYSVPLVQIL---RSRTVNKVRAIILVPTKILIHQVYDCLSKLSQG 286
D+L A TGSGKTLA+ +P V++L R N I++ PT+ L Q + +L +
Sbjct: 128 DVLGAARTGSGKTLAFLIPAVELLFKERFSPRNGTGVIVICPTRELAIQTKNVAEELLKH 187
Query: 287 TSLNVSMSKLENSLKEEHNKFLYNSPDILIITPGRLVDHLQ-MESFDLKTLKFLVLDEAD 345
S VSM N+ + E + S +++I TPGRL+DHLQ ++F K LK LV+DEAD
Sbjct: 188 HSQTVSMVIGGNNRRSEAQRIASGS-NLVIATPGRLLDHLQNTKAFIYKHLKCLVIDEAD 246
Query: 346 RLLNQSFQNWNQVLFHHLTNDKQDKRPGNVIKMVFSATLTTNAEKLYNLYLHNPKIFLTD 405
R+L ++F+ + L +Q +FSAT T+ + L + L +P D
Sbjct: 247 RILEENFEEDMNKILKILPKTRQTA--------LFSATQTSKVKDLARVSLTSPVHVDVD 298
Query: 406 SVKLYSIPKKLQELNVNIPTAKSLFKPLLLLRIIHDIKSSASRNAKILVFVKSNEASIRL 465
+ + L++ +P+ + L +LL+ + + N KI+VF + + S++
Sbjct: 299 DGRRKVTNEGLEQGYCVVPSKQRL---ILLISFL-----KKNLNKKIMVFFSTCK-SVQF 349
Query: 466 ESLLHAMLGSGIIEDEYNMFLXXXXXXXXXXXXRKLIQEFASSEQKKSVLISTDIMARGI 525
+ + + + + M R+ F + KK +L+ TD+ ARG+
Sbjct: 350 HTEIMKISDVDVSDIHGGM-----------DQNRRTKTFFDFMKAKKGILLCTDVAARGL 398
Query: 526 DINEITHVINYDLPISSQQYVHRCGRTARA-NTEGIAINLLV 566
DI + +I YD P +Y+HR GRTAR +G A+ +L+
Sbjct: 399 DIPSVDWIIQYDPPDKPTEYIHRVGRTARGEGAKGKALLVLI 440
>7296646 [A] KOG0331 ATP-dependent RNA helicase
Length = 577
Score = 121 bits (303), Expect = 4e-27
Identities = 93/329 (28%), Positives = 164/329 (49%), Gaps = 29/329 (8%)
Query: 235 ASTGSGKTLAYSVP-LVQILRSRTVNKVR---AIILVPTKILIHQVYDCLSKLSQGTSLN 290
A TGSGKTL Y +P +V I + + + A++L PT+ L Q+ ++ + +
Sbjct: 183 AKTGSGKTLGYILPAIVHINNQQPLQRGDGPIALVLAPTRELAQQIQQVATEFGSSSYVR 242
Query: 291 VSMSKLENSLKEEHNKFLYNSPDILIITPGRLVDHLQMESFDLKTLKFLVLDEADRLLNQ 350
+ + K + L +I+I TPGRL+D L S +LK +LVLDEADR+L+
Sbjct: 243 -NTCVFGGAPKGGQMRDLQRGCEIVIATPGRLIDFLSAGSTNLKRCTYLVLDEADRMLDM 301
Query: 351 SFQNWNQVLFHHLTNDKQDKRPGNVIKMVFSATLTTNAEKLYNLYLHNPKIFLTDSVKLY 410
F+ + + + D+Q +++SAT ++L +L N S++L
Sbjct: 302 GFEPQIRKIVSQIRPDRQT--------LMWSATWPKEVKQLAEDFLGNYIQINIGSLELS 353
Query: 411 SIPKKLQELNVNIPTAKSLFKPLLLLRIIHDIKSSASRNAKILVFVKSNEASIRLESLLH 470
+ Q ++V K L ++ DI ++ KI++FV++ R+++L+
Sbjct: 354 ANHNIRQVVDV----CDEFSKEEKLKTLLSDIYDTSESPGKIIIFVETKR---RVDNLVR 406
Query: 471 AMLGSGIIEDEYNMFLXXXXXXXXXXXXRKLIQEFASSEQKKSVLISTDIMARGIDINEI 530
+ G+ +++EF S K ++L++TD+ ARG+D++ I
Sbjct: 407 FIRSFGVR-------CGAIHGDKSQSERDFVLREFRSG--KSNILVATDVAARGLDVDGI 457
Query: 531 THVINYDLPISSQQYVHRCGRTARANTEG 559
+VIN+D P +S+ Y+HR GRT R+NT+G
Sbjct: 458 KYVINFDYPQNSEDYIHRIGRTGRSNTKG 486
>At3g01540 [A] KOG0331 ATP-dependent RNA helicase
Length = 619
Score = 120 bits (302), Expect = 5e-27
Identities = 104/364 (28%), Positives = 170/364 (46%), Gaps = 42/364 (11%)
Query: 230 DILVNASTGSGKTLAYSVP-LVQILRSRTVNKVRAIILV--PTKILIHQVYDCLSKLSQG 286
DI+ A TGSGKTL Y +P + + R R +++ ILV PT+ L Q+ + K G
Sbjct: 197 DIVAIAKTGSGKTLGYLIPGFLHLQRIRNDSRMGPTILVLSPTRELATQIQEEAVKF--G 254
Query: 287 TSLNVSMSKLENSL-KEEHNKFLYNSPDILIITPGRLVDHLQMESFDLKTLKFLVLDEAD 345
S +S + L K + L DI++ TPGRL D L+M L+ + +LVLDEAD
Sbjct: 255 RSSRISCTCLYGGAPKGPQLRDLERGADIVVATPGRLNDILEMRRISLRQISYLVLDEAD 314
Query: 346 RLLNQSFQNWNQVLFHHLTNDKQDKRPGNVIKMVFSATLTTNAEKLYNLYLHNP-KIFLT 404
R+L+ F+ + + + +Q ++++AT K+ L NP ++ +
Sbjct: 315 RMLDMGFEPQIRKIVKEIPTKRQT--------LMYTATWPKGVRKIAADLLVNPAQVNIG 366
Query: 405 DSVKLYSIPKKLQELNVNIPTAKSLFKPLLLLRIIHDIKSSASRNAKILVFVKSNEASIR 464
+ +L + Q + V P K R + I S +K+++F + +
Sbjct: 367 NVDELVANKSITQHIEVVAPMEKQ--------RRLEQILRSQEPGSKVIIFCSTKRMCDQ 418
Query: 465 LESLLHAMLGSGIIEDEYNMFLXXXXXXXXXXXXRKLIQEFASSEQKKSVLISTDIMARG 524
L L G+ I + + ++ +F S + VL++TD+ ARG
Sbjct: 419 LTRNLTRQFGAAAIHGDKSQ-----------PERDNVLNQFRSG--RTPVLVATDVAARG 465
Query: 525 IDINEITHVINYDLPISSQQYVHRCGRTARANTEGIAINLLVGKGEQKFWSQHIDTDLSR 584
+D+ +I V+NYD P + YVHR GRT RA G A G+Q S+H +DL +
Sbjct: 466 LDVKDIRAVVNYDFPNGVEDYVHRIGRTGRAGATGQAFTFF---GDQD--SKHA-SDLIK 519
Query: 585 DIDG 588
++G
Sbjct: 520 ILEG 523
>SPCC1494.06c [A] KOG0346 RNA helicase
Length = 595
Score = 119 bits (298), Expect = 1e-26
Identities = 110/401 (27%), Positives = 168/401 (41%), Gaps = 78/401 (19%)
Query: 230 DILVNASTGSGKTLAYSVPLVQIL-RSRTVNK----VRAIILVPTKILIHQVYDCLSKLS 284
D++ A TGSGKT AY +P++++L + + +++ + A++LVPT+ L QVY+ L KL+
Sbjct: 53 DLVAQARTGSGKTAAYLIPILELLLKQKQIDENQRGIFALLLVPTRELAQQVYNVLEKLT 112
Query: 285 QGTSLNVSMSKLE-NSLKEEHNKFLYNSPDILIITPGRLVDHLQMESFDLKTLKFLVLDE 343
S ++ + NS L + PDI+I TP R V H+ L LKFLV+DE
Sbjct: 113 AFCSKHIRFINVATNSSDTVQRPLLLDLPDIVIATPSRCVVHVASGVLPLDKLKFLVIDE 172
Query: 344 ADRLLNQSFQNWNQVLFHHLTNDKQDKRPGNVIKMVFSATLTTNAEKLYNLYLHNPKIFL 403
AD +L+ + + L L P + SATL+ N L L NP I
Sbjct: 173 ADLMLSFGYNEDMKTLSRSL--------PRGTQSFLMSATLSKNIASLQKLVCRNPFIL- 223
Query: 404 TDSVKLYSIPKKLQELNVNIPTAKSLFKPLLLLRIIHDIKSSASRNAKILVFVKSNEASI 463
+VK KL + V +LL++ KIL+FV
Sbjct: 224 --AVKDKEASGKLTQYVVKCSEQDKFLLAYILLKL-------RLIKGKILIFVNEINRCY 274
Query: 464 RLESLLH------AMLGSGI-------IEDEYNMFLXXXXXXXXXXXXRKLIQEF----- 505
RL+ L +L S + I ++YN L I+E
Sbjct: 275 RLKLFLEQFGLKSLVLNSELPVNSRLHILEQYNKGLYQIIIATDESGMMGEIEELENNVD 334
Query: 506 ---------------------------------ASSEQKKSVLISTDI---MARGIDINE 529
A + KK + D +ARG+D
Sbjct: 335 FVEEEVISTDQPTLDKMKDQENADVNDESILAAAKDKSKKKKRVKQDKEYGVARGLDFEN 394
Query: 530 ITHVINYDLPISSQQYVHRCGRTARANTEGIAINLLVGKGE 570
+ V+N+D+P +++ Y+HR GRTARA G A++ +V K E
Sbjct: 395 VACVLNFDMPSNTKSYIHRIGRTARAGKPGTAMSFVVPKSE 435
>At1g55150 [A] KOG0331 ATP-dependent RNA helicase
Length = 501
Score = 119 bits (298), Expect = 1e-26
Identities = 94/337 (27%), Positives = 164/337 (47%), Gaps = 35/337 (10%)
Query: 230 DILVNASTGSGKTLAYSVPLVQILRSRTV----NKVRAIILVPTKILIHQVYDCLSKLSQ 285
D++ A TGSGKTL+Y +P + + ++ + + ++L PT+ L Q+ SK
Sbjct: 138 DLIGIAETGSGKTLSYLLPAIVHVNAQPMLAHGDGPIVLVLAPTRELAVQIQQEASKF-- 195
Query: 286 GTSLNVSMSKLENSL-KEEHNKFLYNSPDILIITPGRLVDHLQMESFDLKTLKFLVLDEA 344
G+S + + + + K + L +I+I TPGRL+D ++ + +L+ + +LVLDEA
Sbjct: 196 GSSSKIKTTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMMESNNTNLRRVTYLVLDEA 255
Query: 345 DRLLNQSFQNWNQVLFHHLTNDKQDKRPGNVIKMVFSATLTTNAEKLYNLYLHNPKIFLT 404
DR+L+ F + + H+ D+Q + +SAT E+L +L+NP +
Sbjct: 256 DRMLDMGFDPQIRKIVSHIRPDRQ--------TLYWSATWPKEVEQLSKKFLYNPYKVII 307
Query: 405 DSVKLYSIPKKLQELNVNIPTAKSLFKPLLLLRIIHDIKSSASRNAKILVFVKSNEASIR 464
S L K + + + K L++++ DI ++ILVF+ + + +
Sbjct: 308 GSSDL----KANRAIRQIVDVISESQKYNKLVKLLEDIMD----GSRILVFLDTKKGCDQ 359
Query: 465 LESLLHAMLGSGIIEDEYNMFLXXXXXXXXXXXXRKLIQEFASSEQKKSVLISTDIMARG 524
+ L M G + ++ EF S K ++ +TD+ ARG
Sbjct: 360 ITRQLR-MDGWPAL---------SIHGDKSQAERDWVLSEFRSG--KSPIMTATDVAARG 407
Query: 525 IDINEITHVINYDLPISSQQYVHRCGRTARANTEGIA 561
+D+ ++ +VINYD P S + YVHR GRT RA +G A
Sbjct: 408 LDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTA 444
>CE18785 [A] KOG0331 ATP-dependent RNA helicase
Length = 561
Score = 118 bits (296), Expect = 2e-26
Identities = 128/497 (25%), Positives = 221/497 (43%), Gaps = 77/497 (15%)
Query: 131 SLTPIPQPAKVTNEALKLLDPSTYKSTAWDAATKIHYDSKMVKQ--FDSYEGELDARLLK 188
+LTPI + N A+ + Y+ W +A ++ + + V + F+ E L ++ +
Sbjct: 86 NLTPIEKDFYHENAAVSRREQ--YEIDQWVSANQVTLEGRGVPRPVFEFNEAPLPGQIHE 143
Query: 189 NITSNFSSETFPIQTILFDKVLPLLNSSFKANRKLFTRRVGDILVNASTGSGKTLAYSVP 248
+ F T IQ+I + P+ S DI+ A TGSGKTLA+ +P
Sbjct: 144 LLYGKFQKPTV-IQSISW----PIAMSG------------RDIISIAKTGSGKTLAFMLP 186
Query: 249 -LVQILRSRTVNKVRA---IILVPTKILIHQVYDCLSKLSQGTSLNVSMSKL-ENSLKEE 303
LV I + + ++L+PT+ L QV + SL + M+ L + K
Sbjct: 187 ALVHITKQAHRQRGEGPAVLVLLPTRELAQQVQEVSIDFCH--SLGLKMTCLFGGASKGP 244
Query: 304 HNKFLYNSPDILIITPGRLVDHLQMESFDLKTLKFLVLDEADRLLNQSFQNWNQVLFHHL 363
+ L DI++ TPGRL+D L + ++K +LVLDEADR+L+ F+ + + +
Sbjct: 245 QARDLERGVDIVVATPGRLLDFLDNGTTNMKKCSYLVLDEADRMLDMGFEPQIKKIIGQI 304
Query: 364 TNDKQDKRPGNVIKMVFSATLTTNAEKLYNLYLHNPKIFLTDSVKLYSIPKKLQELNVNI 423
D+Q ++FSAT L + + + S++L + Q +++
Sbjct: 305 RPDRQT--------LMFSATWPKEVRALASDFQKDAAFLNVGSLELAANHNITQVVDILE 356
Query: 424 PTAKSLFKPLLLLRIIHDIKSSASRNAKILVFVKSNEASIRLESLLHAMLGSG----IIE 479
AK LL I++ + K ++FV++ + + L AM G I
Sbjct: 357 EHAKQAKLMELLNHIMNQ------KECKTIIFVETKR---KADELTRAMRRDGWPTLCIH 407
Query: 480 DEYNMFLXXXXXXXXXXXXRKLIQEFASSEQKKSVLISTDIMARGIDINEITHVINYDLP 539
+ N ++QEF + K ++++TD+ ARG+D+++I VINYD P
Sbjct: 408 GDKNQ-----------GERDWVLQEFKAG--KTPIMLATDVAARGLDVDDIKFVINYDYP 454
Query: 540 ISSQQYVHRCGRTARANTEGIAINLLVGKGEQKFWSQHIDTDLSRDIDGYQPSAYLDEEK 599
+S+ YVHR GRT R++ +G A H + ++D+ LDE K
Sbjct: 455 NNSEDYVHRIGRTGRSDKKGTAYTFFT----------HTNASKAKDL-----LKVLDEAK 499
Query: 600 LSELFSIEDTLKDTYKG 616
+ ++ D +Y G
Sbjct: 500 QTVPQALRDMANRSYGG 516
>At5g05450 [A] KOG0345 ATP-dependent RNA helicase
Length = 593
Score = 118 bits (296), Expect = 2e-26
Identities = 113/355 (31%), Positives = 169/355 (46%), Gaps = 36/355 (10%)
Query: 230 DILVNASTGSGKTLAYSVPLVQILRSRT-----VNKVRAIILVPTKILIHQVYDCLSK-L 283
D+ V+A+TGSGKTLA+ VPLV+ILR T ++V +I+ PT+ L Q+Y+ +
Sbjct: 55 DVAVDAATGSGKTLAFVVPLVEILRRSTSFPPKPHQVMGVIISPTRELSTQIYNVAQPFV 114
Query: 284 SQGTSLNVSMSKLENSLKEEHNKFLYNSPDILIITPGRLVDHLQ-MESFDLKTLKFLVLD 342
S ++N + +K + ++LI TPGRL D ++ ME D + L+ L+LD
Sbjct: 115 STLANVNSVLLVGGREVKADMKIIEEEGCNVLIGTPGRLSDIMERMEILDFRNLEILILD 174
Query: 343 EADRLLNQSFQNWNQVLFHHLTNDKQDKRPGNVIKMVFSATLTTNAEKLYNLYLHNPKIF 402
EADRLL FQ + L + +R G +FSAT T E+L L NP
Sbjct: 175 EADRLLEMGFQRQVNYIISRL---PKQRRTG-----LFSATQTEGVEELAKAGLRNP--- 223
Query: 403 LTDSVKLYSIPKKLQELNVNIPTAKSLFKPLLLLRIIHDIKSS-------ASRNAKILVF 455
+ V+ S + Q+L N T L L + D KSS + + K++VF
Sbjct: 224 VRVEVRAKSKSESSQQL-TNSKTPSGLH--LEYMECEADKKSSQLVDLLIKNSDKKLIVF 280
Query: 456 VKSNEASIRLESLLHAMLGSGIIEDEYNMFLXXXXXXXXXXXXRKLIQEFASSEQKKSVL 515
+ AS+ L+ + I ++ L K + F ++ L
Sbjct: 281 FMTC-ASVDYWGLVLSK-----IPALKSISLIPIHGDMKQNARDKALASF--TKASSGAL 332
Query: 516 ISTDIMARGIDINEITHVINYDLPISSQQYVHRCGRTARANTEGIAINLLVGKGE 570
+ TD+ ARG+DI I +V+ YD P + HR GRTAR +G AI L+ K E
Sbjct: 333 LCTDVAARGLDIPGIDYVVQYDPPQDPNMFNHRAGRTARLGRQGRAIVFLLPKEE 387
>YDR021w [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 involved in
rRNA maturation DEAD-box superfamily
Length = 399
Score = 117 bits (294), Expect = 4e-26
Identities = 101/398 (25%), Positives = 190/398 (47%), Gaps = 39/398 (9%)
Query: 177 SYEGELDARLLKNITSNFS-SETFPIQTILFDKVLPLLNSSFKANRKLFTRRVG------ 229
S++ E D +L + S TF + D + + + F+A + +R +
Sbjct: 2 SFDREEDQKLKFKTSKKLKVSSTFESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGK 61
Query: 230 DILVNASTGSGKTLAYSVPLVQILRSRTVNKVRAIILVPTKILIHQVYDCLSKLSQGTSL 289
D++ A +G+GKT +++ L+Q + R + ++A+IL PT+ L Q+ + L ++
Sbjct: 62 DVIAQAQSGTGKTATFTIGLLQAIDLRKKD-LQALILSPTRELASQIGQVVKNLGDYMNV 120
Query: 290 NVSMSKLENSLKEEHNKFLYNSPDILIITPGRLVDHLQMESFDLKTLKFLVLDEADRLLN 349
N +LK++ K + + TPGR++D ++ + + ++ LVLDEAD LL+
Sbjct: 121 NAFAITGGKTLKDDLKKMQKHGCQAVSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLS 180
Query: 350 QSFQNWNQVLFHHLTNDKQDKRPGNVIKMVFSATLTTNAEKLYNLYLHNPKIFLT--DSV 407
++ Q+ D K P N +V SAT+ + ++ ++++P L D +
Sbjct: 181 ETLGFKQQIY------DIFAKLPKNCQVVVVSATMNKDILEVTRKFMNDPVKILVKRDEI 234
Query: 408 KLYSIPKKLQELNVNIPTAKSLFKPLLLLRIIHDIKSSASRNAKILVFVKSNEASIRLES 467
L I ++ VN+ + F L DI S + + ++F + + +++
Sbjct: 235 SLEGI----KQYVVNVDKEEWKFDTLC------DIYDSLT-ITQCVIFCNTKK---KVDW 280
Query: 468 LLHAMLGSGIIEDEYNMFLXXXXXXXXXXXXRKLIQEFASSEQKKSVLISTDIMARGIDI 527
L ++ S N + K++ +F + + VLISTD+ ARGID+
Sbjct: 281 LSQRLIQS-------NFAVVSMHGDMKQEERDKVMNDFRTGHSR--VLISTDVWARGIDV 331
Query: 528 NEITHVINYDLPISSQQYVHRCGRTARANTEGIAINLL 565
+++ VINYDLP + Y+HR GR+ R +G+AIN +
Sbjct: 332 QQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFI 369
>SPAC1F5.10 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 involved in
rRNA maturation DEAD-box superfamily
Length = 394
Score = 117 bits (294), Expect = 4e-26
Identities = 100/375 (26%), Positives = 172/375 (45%), Gaps = 56/375 (14%)
Query: 230 DILVNASTGSGKTLAYSVPLVQILRSRTVNKVRAIILVPTKILIHQVYDCLSKLSQGTSL 289
D++ A +G+GKT +S+ ++Q + +V +A+IL PT+ L Q+ + + L ++
Sbjct: 60 DVIAQAQSGTGKTATFSIGILQSI-DLSVRDTQALILSPTRELAVQIQNVVLALGDHMNV 118
Query: 290 NVSMSKLENSLKEEHNKFLYNSPDILIITPGRLVDHLQMESFDLKTLKFLVLDEADRLLN 349
S+ + K Y ++ TPGR+ D ++ + + +K L+LDEAD LLN
Sbjct: 119 QCHACIGGTSVGNDIKKLDYGQ-HVVSGTPGRVTDMIRRRNLRTRNVKMLILDEADELLN 177
Query: 350 QSFQNWNQVLFHHLTNDKQDKRPGNVIKMVFSATLTTNAEKLYNLYLHNPKIFLT----- 404
Q F+ ++ +L PG + +V SATL + ++ N + NP L
Sbjct: 178 QGFKEQIYDIYRYLP-------PGTQV-VVVSATLPQDVLEMTNKFTTNPVRILVKRDEL 229
Query: 405 --DSVKLYSIPKKLQELNVNIPTAKSLFKPLLLLRIIHDIKSSASRNAKILVFVKSNEAS 462
+ +K Y I + +E + T L+ L + + + +F S
Sbjct: 230 TLEGLKQYFIAVEKEEWKFD--TLCDLYDTLTITQAV--------------IFCNSRR-- 271
Query: 463 IRLESLLHAMLGSGIIEDEYNMFLXXXXXXXXXXXXRKLIQEFASSEQKKSVLISTDIMA 522
+++ L M E N + ++Q+F + VLI TDI A
Sbjct: 272 -KVDWLTEKM-------REANFTVTSMHGEMPQKERDAIMQDFRQGNSR--VLICTDIWA 321
Query: 523 RGIDINEITHVINYDLPISSQQYVHRCGRTARANTEGIAINLLVGKGEQKFWSQHIDTDL 582
RGID+ +++ VINYDLP + + Y+HR GR+ R +G+AIN + + D +
Sbjct: 322 RGIDVQQVSLVINYDLPANRENYIHRIGRSGRFGRKGVAINFVTNE----------DVRI 371
Query: 583 SRDIDGYQPSAYLDE 597
RDI+ Y S +DE
Sbjct: 372 LRDIEQYY-STVIDE 385
>At5g63120 [A] KOG0331 ATP-dependent RNA helicase
Length = 564
Score = 117 bits (294), Expect = 4e-26
Identities = 96/336 (28%), Positives = 163/336 (47%), Gaps = 33/336 (9%)
Query: 230 DILVNASTGSGKTLAYSVP-LVQILRSRTVNKVRA---IILVPTKILIHQVYDCLSKLSQ 285
D++ A TGSGKTLAY +P LV + + + +IL PT+ L Q+ + K
Sbjct: 177 DLIGIAETGSGKTLAYLLPALVHVSAQPRLGQDDGPIVLILAPTRELAVQIQEESRKFGL 236
Query: 286 GTSLNVSMSKLENSLKEEHNKFLYNSPDILIITPGRLVDHLQMESFDLKTLKFLVLDEAD 345
+ + S + K + L +I+I TPGRL+D L+ + +LK + +LVLDEAD
Sbjct: 237 RSGVR-STCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLECQHTNLKRVTYLVLDEAD 295
Query: 346 RLLNQSFQNWNQVLFHHLTNDKQDKRPGNVIKMVFSATLTTNAEKLYNLYLHNPKIFLTD 405
R+L+ F+ + + + D+Q +++SAT E L +L +P +
Sbjct: 296 RMLDMGFEPQIRKIVSQIRPDRQ--------TLLWSATWPREVETLARQFLRDPYKAIIG 347
Query: 406 SVKLYSIPKKLQELNVNIPTAKSLFKPLLLLRIIHDIKSSASRNAKILVFVKSNEASIRL 465
S L + Q + + +PT + + L LL+ + D +KIL+FV++ ++
Sbjct: 348 STDLKANQSINQVIEI-VPTPEKYNRLLTLLKQLMD-------GSKILIFVETKRGCDQV 399
Query: 466 ESLLHAMLGSGIIEDEYNMFLXXXXXXXXXXXXRKLIQEFASSEQKKSVLISTDIMARGI 525
L M G + +++ EF S + ++ +TD+ ARG+
Sbjct: 400 TRQLR-MDGWPAL---------AIHGDKTQSERDRVLAEFKSG--RSPIMTATDVAARGL 447
Query: 526 DINEITHVINYDLPISSQQYVHRCGRTARANTEGIA 561
D+ +I V+NYD P + + Y+HR GRT RA +G+A
Sbjct: 448 DVKDIKCVVNYDFPNTLEDYIHRIGRTGRAGAKGMA 483
>At3g58510 [A] KOG0335 ATP-dependent RNA helicase
Length = 603
Score = 117 bits (294), Expect = 4e-26
Identities = 100/353 (28%), Positives = 164/353 (46%), Gaps = 64/353 (18%)
Query: 230 DILVNASTGSGKTLAYSVPLVQ-ILRSRTVNKVR--------AIILVPTKILIHQVYDCL 280
D++ A TGSGKT A+ P++ I++ + V + R A+IL PT+ L Q++D
Sbjct: 190 DLMACAQTGSGKTAAFCFPIISGIMKDQHVERPRGSRAVYPFAVILSPTRELACQIHDEA 249
Query: 281 SKLSQGTSLNVSMSKLENSLKEEHNKFLYNSPDILIITPGRLVDHLQMESFDLKTLKFLV 340
K S T + V ++ + ++ + L DIL+ TPGRL D L+ ++ ++FL
Sbjct: 250 KKFSYQTGVKVVVAYGGTPIHQQLRE-LERGCDILVATPGRLNDLLERARVSMQMIRFLA 308
Query: 341 LDEADRLLNQSFQNWNQVLFHHLTNDKQDKRPGNVIK-MVFSATLTTNAEKLYNLYLHNP 399
LDEADR+L+ F+ + + ++ D P V + M+FSAT + ++L ++ N
Sbjct: 309 LDEADRMLDMGFEPQIRKIV-----EQMDMPPRGVRQTMLFSATFPSQIQRLAADFMSN- 362
Query: 400 KIFLTDSVKLYSIPKKLQELNVNIPTAKSLFKPLLLLRIIHDIKSSASRNAKILVFVKSN 459
IFL + + SS + + FV+ +
Sbjct: 363 YIFLA----------------------------------VGRVGSSTDLITQRVEFVQES 388
Query: 460 EASIRLESLLHAM--------LGSGIIEDE--YNMFLXXXXXXXXXXXXRKL-IQEFASS 508
+ L LLHA G+ +E+ N F R++ ++ F +
Sbjct: 389 DKRSHLMDLLHAQRETQDKTKRGADTLENWLCMNEFPATSIHGDRTQQEREVALRSFKTG 448
Query: 509 EQKKSVLISTDIMARGIDINEITHVINYDLPISSQQYVHRCGRTARANTEGIA 561
+ +L++TD+ ARG+DI + HV+N+DLP YVHR GRT RA GIA
Sbjct: 449 --RTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGIA 499
>Hs22057246 [A] KOG0336 ATP-dependent RNA helicase
Length = 631
Score = 117 bits (293), Expect = 5e-26
Identities = 93/343 (27%), Positives = 165/343 (47%), Gaps = 39/343 (11%)
Query: 230 DILVNASTGSGKTLAYSVPLVQILRSRTVNKVRA-----IILVPTKIL-IHQVYDCLSKL 283
D++V A TG+GKTL+Y +P L S+ +++ + ++L PT+ L +H +C
Sbjct: 261 DLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQRNGPGMLVLTPTRELALHVEAECSKYS 320
Query: 284 SQGT-SLNVSMSKLENSLKEEHNKFLYNSPDILIITPGRLVDHLQMESFDLKTLKFLVLD 342
+G S+ + + N E+ +K + DI+I TPGRL D S +L+++ +LV+D
Sbjct: 321 YKGLKSICIYGGRNRNGQIEDISKGV----DIIIATPGRLNDLQMNNSVNLRSITYLVID 376
Query: 343 EADRLLNQSFQNWNQVLFHHLTNDKQDKRPGNVIKMVFSATLTTNAEKLYNLYLHNPKIF 402
EAD++L+ F+ + + + D+Q ++ SAT +L YL +P I
Sbjct: 377 EADKMLDMEFEPQIRKILLDVRPDRQT--------VMTSATWPDTVRQLALSYLKDPMIV 428
Query: 403 LTDSVKLYSIPKKLQELNVNIPTAKSLFKPLLLLRIIHDIKSSASRNAKILVFVKSNEAS 462
++ L ++ Q + V K + + + S N K+++FV +
Sbjct: 429 YVGNLNLVAVNTVKQNIIVTTEKEKRA--------LTQEFVENMSPNDKVIMFVSQKHIA 480
Query: 463 IRLESLLHAMLGSGIIEDEYNMFLXXXXXXXXXXXXRKLIQEFASSEQKKSVLISTDIMA 522
L S + GI + + + +++F S K +LI+TDI++
Sbjct: 481 DDLSSDFNIQ---GISAESLH-------GNSEQSDQERAVEDFKSGNIK--ILITTDIVS 528
Query: 523 RGIDINEITHVINYDLPISSQQYVHRCGRTARANTEGIAINLL 565
RG+D+N++THV NYD P + YVHR G R G ++ L+
Sbjct: 529 RGLDLNDVTHVYNYDFPRNIDVYVHRVGYIGRTGKTGTSVTLI 571
>YMR290c [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 505
Score = 117 bits (292), Expect = 7e-26
Identities = 100/340 (29%), Positives = 163/340 (47%), Gaps = 32/340 (9%)
Query: 230 DILVNASTGSGKTLAYSVPLVQILRS---RTVNKVRAIILVPTKILIHQVYDCLSKLSQG 286
D+L A TGSGKTLA+ +P +++L S + N I++ PT+ L Q++ +L +
Sbjct: 81 DVLGAAKTGSGKTLAFLIPAIELLHSLKFKPRNGTGIIVITPTRELALQIFGVARELMEF 140
Query: 287 TSLNVSMSKLENSLKEEHNKFLYNSPDILIITPGRLVDHLQ-MESFDLKTLKFLVLDEAD 345
S + + ++E K L ++LI TPGRL+DHLQ + F K LK L++DEAD
Sbjct: 141 HSQTFGIVIGGANRRQEAEK-LMKGVNMLIATPGRLLDHLQNTKGFVFKNLKALIIDEAD 199
Query: 346 RLLNQSFQNWNQVLFHHLTNDKQDKRPGNVIKMVFSATLTTNAEKLYNLYLHNPKIFLTD 405
R+L F++ + + L N+ + M+FSAT TT E L + L +F+
Sbjct: 200 RILEIGFEDEMRQIIKILPNEDRQ-------SMLFSATQTTKVEDLARISLRPGPLFI-- 250
Query: 406 SVKLYSIPKKLQELNVNIPTAKSLFKPLLLLRIIHDIKSSASRNAKILVFVKSNEASIRL 465
+V + L S + LLL + ++ KI+VF+ S +
Sbjct: 251 NVVPETDNSTADGLEQGYVVCDSDKRFLLLFSFL-----KRNQKKKIIVFLSSCNSVKYY 305
Query: 466 ESLLHAMLGSGIIEDEYNMFLXXXXXXXXXXXXRKLIQEFASSEQKKSVLISTDIMARGI 525
LL+ + ++ + EF ++E + +LI TD+ ARG+
Sbjct: 306 AELLNYI----------DLPVLELHGKQKQQKRTNTFFEFCNAE--RGILICTDVAARGL 353
Query: 526 DINEITHVINYDLPISSQQYVHRCGRTARANTEGIAINLL 565
DI + +I +D P + Y+HR GRTAR T+G +L+
Sbjct: 354 DIPAVDWIIQFDPPDDPRDYIHRVGRTAR-GTKGKGKSLM 392
>Hs13787206 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 670
Score = 117 bits (292), Expect = 7e-26
Identities = 104/343 (30%), Positives = 157/343 (45%), Gaps = 37/343 (10%)
Query: 230 DILVNASTGSGKTLAYSVPLVQI---LRSRTVNKVRAIILVPTKILIHQVYDCLSKLSQG 286
D+L A TGSGKTLA+ +P V++ LR T N +IL PT+ L Q + L +L
Sbjct: 218 DLLAAAKTGSGKTLAFLIPAVELIVKLRFMTRNGTGVLILSPTRELAMQTFGVLKELMTH 277
Query: 287 TSLNVSMSKLENSLKEEHNKFLYNSPDILIITPGRLVDHLQ-MESFDLKTLKFLVLDEAD 345
+ ++ E K L N +I++ TPGRL+DH+Q F K L+ LV+DEAD
Sbjct: 278 HVHTYGLIMGGSNRSAEAQK-LGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEAD 336
Query: 346 RLLNQSFQNWNQVLFHHLTNDKQDKRPGNVIKMVFSATLTTNAEKLYNLYLHNPKIFL-T 404
R+L+ F+ + + L +Q M+FSAT T E L + L +++
Sbjct: 337 RILDVGFEEELKQIIKLLPTRRQ--------TMLFSATQTRKVEDLARISLKKEPLYVGV 388
Query: 405 DSVKLYSIPKKLQELNVNIPTAKSLFKPLLLLRIIHDIKSSASRNAKILVFVKS-NEASI 463
D K + L++ V P+ K LLL + +R K++VF S
Sbjct: 389 DDDKANATVDGLEQGYVVCPSEKRF---LLLFTFL-----KKNRKKKLMVFFSSCMSVKY 440
Query: 464 RLESLLHAMLGSGIIEDEYNMFLXXXXXXXXXXXXRKLIQEFASSEQKKSVLISTDIMAR 523
E L + L I + ++ F L+ TD+ AR
Sbjct: 441 HYELLNYIDLPVLAIHGKQKQ-------------NKRTTTFFQFCNADSGTLLCTDVAAR 487
Query: 524 GIDINEITHVINYDLPISSQQYVHRCGRTARA-NTEGIAINLL 565
G+DI E+ ++ YD P ++Y+HR GRTAR N G A+ +L
Sbjct: 488 GLDIPEVDWIVQYDPPDDPKEYIHRVGRTARGLNGRGHALLIL 530
>CE03821 [A] KOG0345 ATP-dependent RNA helicase
Length = 578
Score = 117 bits (292), Expect = 7e-26
Identities = 109/395 (27%), Positives = 181/395 (45%), Gaps = 51/395 (12%)
Query: 195 SSETFPIQTILF-DKVLPLLNSSFKANRKLFTR----------RVGDILVNASTGSGKTL 243
+S+ P+ F +K+ P L F + K FT + D++V + TGSGKTL
Sbjct: 2 TSKVGPVALKTFREKLGPELLEVFDKSYKSFTDVQVLSGTHLLNLSDVVVESPTGSGKTL 61
Query: 244 AYSVPLVQILRSRTVN--KVRAIILVPTKILIHQVYDCLSKLSQGTSLNVSM----SKLE 297
A+ +P+++++++ + + A+IL P++ L Q+ + ++ +L V K++
Sbjct: 62 AFVLPMMRMIQNAKLQPADIGALILSPSRELCSQIVSVIQPFAEKLNLTVETVTGGQKVD 121
Query: 298 NSLKEEHNKFLYNSPDILIITPGRLVDHLQME----SFDLKTLKFLVLDEADRLLNQSFQ 353
++K NK + +IL+ TPGRL +Q E + ++TL+ LV+DEADR F+
Sbjct: 122 KNIKMFKNK----NVNILVATPGRLFQIIQHEKTLIARKMRTLQLLVIDEADRFNEIQFE 177
Query: 354 NWNQVLFHHLTNDKQDKRPGNVIKMVFSATLTTNAEKLYNLYLHNPKIFLTDSVKLYSIP 413
+ + + L+ + +R G +FSAT + L L N K + + P
Sbjct: 178 DHMREI---LSCIPKQRRTG-----LFSATQVKEEDDLMVFGLRNAKQVKVAQERNSAAP 229
Query: 414 KKLQELNVNIPTAKSLFKPLLLLRIIHDIKSSASRNAKILVFVKSNEASIRLESLLHAML 473
L+ V + L +R + KIL+F S + + L
Sbjct: 230 STLKNYYVECRADEKTSVCLEFIR--------QRTDKKILIFFPSCNSVRYFYKIFERCL 281
Query: 474 GSGIIEDEYNMFLXXXXXXXXXXXXRKLIQEFASSEQKKSVLISTDIMARGIDINEITHV 533
G + + Q A S+ V+ISTD+MARGIDI++I V
Sbjct: 282 GKRPL----------FAVHGKCSNPHRASQIKAFSDSTNGVMISTDVMARGIDISDIDWV 331
Query: 534 INYDLPISSQQYVHRCGRTARANTEGIAINLLVGK 568
I +DLP S +VHR GRTAR EG A+ L+ +
Sbjct: 332 IQFDLPKHSSWFVHRAGRTARCGREGNALILIASE 366
>At5g65900 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 633
Score = 117 bits (292), Expect = 7e-26
Identities = 106/395 (26%), Positives = 177/395 (43%), Gaps = 37/395 (9%)
Query: 230 DILVNASTGSGKTLAYSVPLVQIL---RSRTVNKVRAIILVPTKILIHQVYDCLSKLSQG 286
D+L A TGSGKTLA+ +P V++L + N +++ PT+ L Q Y +L +
Sbjct: 193 DVLGAARTGSGKTLAFLIPAVELLYRVKFTPRNGTGVLVICPTRELAIQSYGVAKELLKY 252
Query: 287 TSLNVSMSKLENSLKEEHNKFLYNSPDILIITPGRLVDHLQ-MESFDLKTLKFLVLDEAD 345
S V + ++ + L ++L+ TPGRL+DHL+ F K LKFLV+DEAD
Sbjct: 253 HSQTVG-KVIGGEKRKTEAEILAKGVNLLVATPGRLLDHLENTNGFIFKNLKFLVMDEAD 311
Query: 346 RLLNQSFQNWNQVLFHHLTNDKQDKRPGNVIKMVFSATLTTNAEKLYNLYLHNPKIFLTD 405
R+L Q+F+ + + + L +Q +FSAT + E L + L +P D
Sbjct: 312 RILEQNFEEDLKKILNLLPKTRQTS--------LFSATQSAKVEDLARVSLTSPVYIDVD 363
Query: 406 SVKLYSIPKKLQELNVNIPTAKSLFKPLLLLRIIHDIKSSASRNAKILVFVKSNEASIRL 465
+ + L++ +P+A L L L+ K KI+VF + ++
Sbjct: 364 EGRKEVTNEGLEQGYCVVPSAMRLLFLLTFLKRFQGKK-------KIMVFFSTCKS---- 412
Query: 466 ESLLHAMLGSGIIEDEYNMFLXXXXXXXXXXXXRKLIQEFASSEQKKSVLISTDIMARGI 525
+ HA L I D +F +E +L+ T++ ARG+
Sbjct: 413 -TKFHAELFRYIKFD-----CLEIRGGIDQNKRTPTFLQFIKAE--TGILLCTNVAARGL 464
Query: 526 DINEITHVINYDLPISSQQYVHRCGRTARANTEGIAINLLVGKGEQKFWSQHIDTDLSRD 585
D + ++ YD P + Y+HR GRTAR L++ E KF + +
Sbjct: 465 DFPHVDWIVQYDPPDNPTDYIHRVGRTARGEGAKGKALLVLTPQELKFIQYLKAAKIPVE 524
Query: 586 IDGYQPSAYLD-----EEKLSELFSIEDTLKDTYK 615
++ LD E +SE ++++++ K+ YK
Sbjct: 525 EHEFEEKKLLDVKPFVENLISENYALKESAKEAYK 559
>At5g14610 [A] KOG0331 ATP-dependent RNA helicase
Length = 713
Score = 117 bits (292), Expect = 7e-26
Identities = 95/336 (28%), Positives = 157/336 (46%), Gaps = 34/336 (10%)
Query: 230 DILVNASTGSGKTLAYSVP-LVQILRSRTVNKVRAIILV--PTKILIHQVYDCLSKLSQG 286
DI+ A TGSGKTL Y +P + + R +++ ILV PT+ L Q+ + L G
Sbjct: 268 DIVAIAKTGSGKTLGYLIPGFMHLQRIHNDSRMGPTILVLSPTRELATQIQ--VEALKFG 325
Query: 287 TSLNVSMSKLENSL-KEEHNKFLYNSPDILIITPGRLVDHLQMESFDLKTLKFLVLDEAD 345
S +S + L K K + DI++ TPGRL D L+M+ L + +LVLDEAD
Sbjct: 326 KSSKISCACLYGGAPKGPQLKEIERGVDIVVATPGRLNDILEMKRISLHQVSYLVLDEAD 385
Query: 346 RLLNQSFQNWNQVLFHHLTNDKQDKRPGNVIKMVFSATLTTNAEKLYNLYLHNPKIFLTD 405
R+L+ F+ + + + + +Q ++++AT K+ L NP
Sbjct: 386 RMLDMGFEPQIRKIVNEVPTKRQT--------LMYTATWPKEVRKIAADLLVNPA----- 432
Query: 406 SVKLYSIPKKLQELNVNIPTAKSLFKPLLLLRIIHDIKSSASRNAKILVFVKSNEASIRL 465
V + ++ + + N +I + P+ + I S +KI++F + +L
Sbjct: 433 QVNIGNVDELVA--NKSITQTIEVLAPMEKHSRLEQILRSQEPGSKIIIFCSTKRMCDQL 490
Query: 466 ESLLHAMLGSGIIEDEYNMFLXXXXXXXXXXXXRKLIQEFASSEQKKSVLISTDIMARGI 525
L G+ I + + ++ +F S + VL++TD+ ARG+
Sbjct: 491 ARNLTRTFGAAAIHGDKSQ-----------AERDDVLNQFRSG--RTPVLVATDVAARGL 537
Query: 526 DINEITHVINYDLPISSQQYVHRCGRTARANTEGIA 561
D+ +I V+NYD P + YVHR GRT RA G+A
Sbjct: 538 DVKDIRVVVNYDFPNGVEDYVHRIGRTGRAGATGLA 573
>Hs4759278 [A] KOG0333 U5 snRNP-like RNA helicase subunit
Length = 820
Score = 116 bits (290), Expect = 1e-25
Identities = 106/375 (28%), Positives = 165/375 (43%), Gaps = 57/375 (15%)
Query: 230 DILVNASTGSGKTLAYSVPL-VQILRSRTVNKVR-------AIILVPTKILIHQVYDCLS 281
DI+ A TGSGKT A+ +PL V I ++++ AIIL PT+ L Q+ +
Sbjct: 430 DIIGVAETGSGKTAAFLIPLLVWITTLPKIDRIEESDQGPYAIILAPTRELAQQIEEETI 489
Query: 282 KLSQGTSLNVSMSKLENSLKEEHNKF-LYNSPDILIITPGRLVDHLQMESFDLKTLKFLV 340
K G L + + + E F L +I+I TPGRL+D L+ L ++V
Sbjct: 490 KF--GKPLGIRTVAVIGGISREDQGFRLRMGCEIVIATPGRLIDVLENRYLVLSRCTYVV 547
Query: 341 LDEADRLLNQSFQNWNQVLFHHL--TNDKQD----KRPGNVI------------KMVFSA 382
LDEADR+++ F+ Q + H+ +N K D + P ++ ++F+A
Sbjct: 548 LDEADRMIDMGFEPDVQKILEHMPVSNQKPDTDEAEDPEKMLANFESGKHKYRQTVMFTA 607
Query: 383 TLTTNAEKLYNLYLHNPKIFLTDSVKLYSIPKKLQELNVNIPTAKSLFKPLLLLRIIHDI 442
T+ E+L YL P + S P + E V + + K LL +
Sbjct: 608 TMPPAVERLARSYLRRPAVVYIGSA---GKPHERVEQKVFLMSESEKRKKLLAI------ 658
Query: 443 KSSASRNAKILVFVKSNEASIRLESLLHAMLGSGIIEDEYNMFLXXXXXXXXXXXXRKLI 502
+ I++FV + L L M YN
Sbjct: 659 -LEQGFDPPIIIFVNQKKGCDVLAKSLEKM--------GYNACTLHGGKGQEQ------- 702
Query: 503 QEFASSEQK---KSVLISTDIMARGIDINEITHVINYDLPISSQQYVHRCGRTARANTEG 559
+EFA S K K +L++TD+ RGIDI +++ V+NYD+ + + Y+HR GRT RA G
Sbjct: 703 REFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIEDYIHRIGRTGRAGKSG 762
Query: 560 IAINLLVGKGEQKFW 574
+AI L + F+
Sbjct: 763 VAITFLTKEDSAVFY 777
>Hs17474597 [A] KOG0333 U5 snRNP-like RNA helicase subunit
Length = 820
Score = 116 bits (290), Expect = 1e-25
Identities = 106/375 (28%), Positives = 165/375 (43%), Gaps = 57/375 (15%)
Query: 230 DILVNASTGSGKTLAYSVPL-VQILRSRTVNKVR-------AIILVPTKILIHQVYDCLS 281
DI+ A TGSGKT A+ +PL V I ++++ AIIL PT+ L Q+ +
Sbjct: 430 DIIGVAETGSGKTAAFLIPLLVWITTLPKIDRIEESDQGPYAIILAPTRELAQQIEEETI 489
Query: 282 KLSQGTSLNVSMSKLENSLKEEHNKF-LYNSPDILIITPGRLVDHLQMESFDLKTLKFLV 340
K G L + + + E F L +I+I TPGRL+D L+ L ++V
Sbjct: 490 KF--GKPLGIRTVAVIGGISREDQGFRLRMGCEIVIATPGRLIDVLENRYLVLSRCTYVV 547
Query: 341 LDEADRLLNQSFQNWNQVLFHHL--TNDKQD----KRPGNVI------------KMVFSA 382
LDEADR+++ F+ Q + H+ +N K D + P ++ ++F+A
Sbjct: 548 LDEADRMIDMGFEPDVQKILEHMPVSNQKPDTDEAEDPEKMLANFESGKHKYRQTVMFTA 607
Query: 383 TLTTNAEKLYNLYLHNPKIFLTDSVKLYSIPKKLQELNVNIPTAKSLFKPLLLLRIIHDI 442
T+ E+L YL P + S P + E V + + K LL +
Sbjct: 608 TMPPAVERLARSYLRRPAVVYIGSA---GKPHERVEQKVFLMSESEKRKKLLAI------ 658
Query: 443 KSSASRNAKILVFVKSNEASIRLESLLHAMLGSGIIEDEYNMFLXXXXXXXXXXXXRKLI 502
+ I++FV + L L M YN
Sbjct: 659 -LEQGFDPPIIIFVNQKKGCDVLAKSLEKM--------GYNACTLHGGKGQEQ------- 702
Query: 503 QEFASSEQK---KSVLISTDIMARGIDINEITHVINYDLPISSQQYVHRCGRTARANTEG 559
+EFA S K K +L++TD+ RGIDI +++ V+NYD+ + + Y+HR GRT RA G
Sbjct: 703 REFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIEDYIHRIGRTGRAGKSG 762
Query: 560 IAINLLVGKGEQKFW 574
+AI L + F+
Sbjct: 763 VAITFLTKEDSAVFY 777
>At4g16630 [A] KOG0338 ATP-dependent RNA helicase
Length = 683
Score = 116 bits (290), Expect = 1e-25
Identities = 114/417 (27%), Positives = 177/417 (42%), Gaps = 66/417 (15%)
Query: 230 DILVNASTGSGK--------------------TLAYSVPLVQ--ILRSRTVNKVRAIILV 267
D+ +A TGSGK T A+++P ++ + R + V R +IL
Sbjct: 204 DLCASAITGSGKVSTRLMVLCNTEILFRYLTNTAAFALPTLERLLFRPKRVFATRVLILT 263
Query: 268 PTKILIHQVYDCLSKLSQGTSLNVSMSKLENSLKEEHNKFLYNSPDILIITPGRLVDHLQ 327
PT+ L Q++ + L+Q T + + S++E+ L + PDI++ TPGR++DHL+
Sbjct: 264 PTRELAVQIHSMIQNLAQFTDIKCGLIVGGLSVREQE-VVLRSMPDIVVATPGRMIDHLR 322
Query: 328 ME-SFDLKTLKFLVLDEADRLLNQSFQNWNQVLFHHLTNDKQDKRPGNVIKMVFSATLTT 386
S DL L L+LDEADRLL F L +Q M+FSAT+T
Sbjct: 323 NSMSVDLDDLAVLILDEADRLLQTGFATEITELVRLCPKRRQ--------TMLFSATMTE 374
Query: 387 NAEKLYNLYLHNPKIFLTDSVKLYSIPKKLQELNVNIPTAKSLFKPLLLLRIIHDIKSSA 446
++L L L+ P ++L + P + + + F P K +A
Sbjct: 375 EVKELVKLSLNKP-------LRLSADPSARRPPGLTEEYLREFFVP----SCASGTKQAA 423
Query: 447 SRNAKILVFVKSNEASIRLESLLHAMLGSGIIEDEYNMFLXXXXXXXXXXXXRKLIQEFA 506
R KIL + +A + LH L D N+ L
Sbjct: 424 HR-LKILFGLAGLKA-----AELHGNLTQAQRLDVRNL------------GTSALFSLEL 465
Query: 507 SSEQKKSVLISTDIMARGIDINEITHVINYDLPISSQQYVHRCGRTARANTEGIAINLLV 566
+Q+ LI+TD+ ARG+DI + VINY P YVHR GRTARA EG A+ +
Sbjct: 466 FRKQEVDFLIATDVAARGLDIIGVQTVINYACPREIDSYVHRVGRTARAGREGYAVTFVT 525
Query: 567 GKGEQKFWSQHIDTDL-----SRDIDGYQPSAYLDEEKLSELFSIEDTLKDTYKGCI 618
++ L ++ + S + E+ + + I D ++D Y I
Sbjct: 526 DSDRSLLKVITFESTLFLCLKAKKVGSKLKSRVIPEQSIVKWSQIIDEMEDQYSAVI 582
>YJL033w [A] KOG0343 RNA Helicase
Length = 770
Score = 115 bits (289), Expect = 2e-25
Identities = 100/354 (28%), Positives = 167/354 (46%), Gaps = 38/354 (10%)
Query: 230 DILVNASTGSGKTLAYSVPLVQIL---RSRTVNKVRAIILVPTKILIHQVYDCLSKLSQG 286
D+L A TGSGKTLA+ VP+++ L + + + A+I+ PT+ L Q+Y+ L+K+
Sbjct: 80 DVLAAAKTGSGKTLAFLVPVIEKLYREKWTEFDGLGALIISPTRELAMQIYEVLTKIGSH 139
Query: 287 TSLNVSMSKLENSLKEEHNKFLYNSPDILIITPGRLVDHL-QMESFDLKTLKFLVLDEAD 345
TS + + +K E + + +ILI TPGR++ HL Q + L+ LVLDEAD
Sbjct: 140 TSFSAGLVIGGKDVKFELERI--SRINILIGTPGRILQHLDQAVGLNTSNLQMLVLDEAD 197
Query: 346 RLLNQSFQNWNQVLFHHLTNDKQDKRPGNVIKMVFSATLTTNAEKLYNLYLHNPKIFLTD 405
R L+ F+ + L+ +Q ++FSAT + + L L L + K T
Sbjct: 198 RCLDMGFKKTLDAIVSTLSPSRQT--------LLFSATQSQSVADLARLSLTDYKTVGTH 249
Query: 406 SV------KLYSIPKKLQELNVNIPTAKSLFKPLLLLRIIHDIKSSASRNAKILVFVKSN 459
V K S P+ LQ+ + +P A L +L I +K K++VF+ S+
Sbjct: 250 DVMDGSVNKEASTPETLQQFYIEVPLADKL--DILFSFIKSHLK------CKMIVFLSSS 301
Query: 460 EASIRLESLLHAMLGSGIIEDEYNMFLXXXXXXXXXXXXRKLIQEFASSEQKKSVLISTD 519
+ + M + + L + + +F ++Q L +TD
Sbjct: 302 KQVHFVYETFRKM--------QPGISLMHLHGRQKQRARTETLDKFNRAQQV--CLFATD 351
Query: 520 IMARGIDINEITHVINYDLPISSQQYVHRCGRTARANTEGIAINLLVGKGEQKF 573
++ARGID + V+ D P Y+HR GR AR +G ++ +L + ++ F
Sbjct: 352 VVARGIDFPAVDWVVQVDCPEDVDTYIHRVGRCARYGKKGKSLIMLTPQEQEAF 405
>Hs19923595 [A] KOG0337 ATP-dependent RNA helicase
Length = 882
Score = 115 bits (289), Expect = 2e-25
Identities = 102/340 (30%), Positives = 158/340 (46%), Gaps = 36/340 (10%)
Query: 230 DILVNASTGSGKTLAYSVPLVQILRSRTVNK-VRAIILVPTKILIHQVYDCLSKLSQGTS 288
D++ A TGSGKT + +P+ + L++ + RA+IL PT+ L Q +L + T
Sbjct: 135 DVVAMARTGSGKTACFLLPMFERLKTHSAQTGARALILSPTRELALQTLKFTKELGKFTG 194
Query: 289 LNVSMSKLENSLKEEHNKFLYNSPDILIITPGRLVDHLQME-SFDLKTLKFLVLDEADRL 347
L ++ L E+ L+ +PDI+I TPGRLV H+ +E S L++++++V DEADRL
Sbjct: 195 LKTALI-LGGDRMEDQFAALHENPDIIIATPGRLV-HVAVEMSLKLQSVEYVVFDEADRL 252
Query: 348 LNQSFQNWNQVLFHHLTNDKQDKRPGNVIKMVFSATLTTNAEKLYNLYLHNPKIFLTDSV 407
F Q + L PG ++FSATL + L P + D
Sbjct: 253 FEMGFAEQLQEIIARL--------PGGHQTVLFSATLPKLLVEFARAGLTEPVLIRLD-- 302
Query: 408 KLYSIPKKLQE-LNVNIPTAKSLFKPLLLLRIIHDIKSSASRNAKILVFVKSNEASIRLE 466
+ KL E L + + K +LL ++H++ + +VFV + + L
Sbjct: 303 ----VDTKLNEQLKTSFFLVREDTKAAVLLHLLHNVVRPQDQT---VVFVATKHHAEYLT 355
Query: 467 SLLHAMLGSGIIEDEYNMFLXXXXXXXXXXXXRKL-IQEFASSEQKKSVLISTDIMARGI 525
LL S RK+ + +F K S LI TD+ ARG+
Sbjct: 356 ELLTTQRVS-----------CAHIYSALDPTARKINLAKFTLG--KCSTLIVTDLAARGL 402
Query: 526 DINEITHVINYDLPISSQQYVHRCGRTARANTEGIAINLL 565
DI + +VINY P + ++HR GR ARA G A +L+
Sbjct: 403 DIPLLDNVINYSFPAKGKLFLHRVGRVARAGRSGTAYSLV 442
>CE00839 [A] KOG0326 ATP-dependent RNA helicase
Length = 430
Score = 115 bits (289), Expect = 2e-25
Identities = 97/378 (25%), Positives = 180/378 (46%), Gaps = 45/378 (11%)
Query: 230 DILVNASTGSGKTLAYSVPLVQILRSRTVNKVRAIILVPTKILIHQVYDCLSKLSQGTSL 289
DIL A G+GKT AY +P+++ ++ + ++A+++VPT+ L Q +LS+ L
Sbjct: 82 DILARAKNGTGKTGAYCIPVIEKIQP-ALKAIQAMVIVPTRELALQTSQICVELSKHIQL 140
Query: 290 NVSMSKLENSLKEEHNKFLYNSPDILIITPGRLVDHLQMESFDLKTLKFLVLDEADRLLN 349
V ++ L+++ + L + ++I TPGR++D ++ ++ K LVLDEAD+LL+
Sbjct: 141 KVMVTTGGTDLRDDIMR-LNGTVHLVIATPGRILDLMEKGVAKMEHCKTLVLDEADKLLS 199
Query: 350 QSFQNWNQVLFHHLTNDKQDKRPGNVIKMVFSATLTTNAEKLYNLYLHNP-KIFLTDSVK 408
Q FQ L + L ++Q M++SAT ++H P +I L + +
Sbjct: 200 QDFQGILDRLINFLPKERQ--------VMLYSATFPNTVTSFMQKHMHKPYEINLMEELT 251
Query: 409 LYSIPK--KLQELNVNIPTAKSLFKPLLLLRIIHDIKSSASRNAKILVFVKSNEASIRLE 466
L + + + + +LF+ L + + I +F S + R+E
Sbjct: 252 LLGVTQYYAFVQEKQKVHCLNTLFRKLQINQSI--------------IFCNSTQ---RVE 294
Query: 467 SLLHAMLGSGIIEDEYNMFLXXXXXXXXXXXXRKLIQEFASSEQKKSVLISTDIMARGID 526
+L I E Y+ + ++ +F + L+ +D++ RGID
Sbjct: 295 -----LLAKKITEIGYSCY--YIHSKMAQNHRNRVFHDFRQGNCRN--LVCSDLLTRGID 345
Query: 527 INEITHVINYDLPISSQQYVHRCGRTARANTEGIAINLLVGKGEQKFWSQHIDTDLSRDI 586
I + VIN+D P +++ Y+HR GR+ R G+AINL+ E + + I+ +L I
Sbjct: 346 IQAVNVVINFDFPRNAETYLHRIGRSGRFGHLGVAINLIT--YEDRHTLRRIEQELRTRI 403
Query: 587 D----GYQPSAYLDEEKL 600
+ P Y+ +++L
Sbjct: 404 EPIPKTVDPKLYVADQQL 421
>YKR059w [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 395
Score = 115 bits (288), Expect = 2e-25
Identities = 108/438 (24%), Positives = 199/438 (44%), Gaps = 68/438 (15%)
Query: 160 DAATKIHYDSKMVKQFDSYEGELDARLLKNITSNFSSETFPIQTILFDKVLPLLNSSFKA 219
++ + +YD K+V +FD E LD LL+ + E IQ ++P++
Sbjct: 10 ESQIQTNYD-KVVYKFDDME--LDENLLRGVFGYGFEEPSAIQQ---RAIMPIIEGH--- 60
Query: 220 NRKLFTRRVGDILVNASTGSGKTLAYSVPLVQILRSRTVNKVRAIILVPTKILIHQVYDC 279
D+L A +G+GKT +S+ +Q + + +V +A++L PT+ L Q+
Sbjct: 61 ----------DVLAQAQSGTGKTGTFSIAALQRIDT-SVKAPQALMLAPTRELALQIQKV 109
Query: 280 LSKLSQGTSLNVSMSKLENSLKEEHNKFLYNSPDILIITPGRLVDHLQMESFDLKTLKFL 339
+ L+ + V S E+ I++ TPGR+ D++Q F +K
Sbjct: 110 VMALAFHMDIKVHACIGGTSFVEDAEGL--RDAQIVVGTPGRVFDNIQRRRFRTDKIKMF 167
Query: 340 VLDEADRLLNQSFQNWNQVLFHHLTNDKQDKRPGNVIKMVFSATLTTNAEKLYNLYLHNP 399
+LDEAD +L+ F+ +F L P ++ SAT+ + ++ ++ NP
Sbjct: 168 ILDEADEMLSSGFKEQIYQIFTLL--------PPTTQVVLLSATMPNDVLEVTTKFMRNP 219
Query: 400 KIFLTDSVKLYSIPKKLQELNVNIPTAKSLFKPLLLLRIIHDIKSSASRNAKILVF---- 455
L +L + +++ VN+ + ++ L D+ S S ++
Sbjct: 220 VRILVKKDELTL--EGIKQFYVNVEEEEYKYECLT------DLYDSISVTQAVIFCNTRR 271
Query: 456 -VKSNEASIRLESLLHAMLGSGIIEDEYNMFLXXXXXXXXXXXXRKLIQEFASSEQKKSV 514
V+ +R + + + S + + E + +++EF S + +
Sbjct: 272 KVEELTTKLRNDKFTVSAIYSDLPQQERDT----------------IMKEFRSGSSR--I 313
Query: 515 LISTDIMARGIDINEITHVINYDLPISSQQYVHRCGRTARANTEGIAINLLVGKGE---- 570
LISTD++ARGID+ +++ VINYDLP + + Y+HR GR R +G+AIN + +
Sbjct: 314 LISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMR 373
Query: 571 --QKFWSQHIDTDLSRDI 586
+KF+S I+ +L DI
Sbjct: 374 ELEKFYSTQIE-ELPSDI 390
>YJL138c [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 395
Score = 115 bits (288), Expect = 2e-25
Identities = 108/438 (24%), Positives = 199/438 (44%), Gaps = 68/438 (15%)
Query: 160 DAATKIHYDSKMVKQFDSYEGELDARLLKNITSNFSSETFPIQTILFDKVLPLLNSSFKA 219
++ + +YD K+V +FD E LD LL+ + E IQ ++P++
Sbjct: 10 ESQIQTNYD-KVVYKFDDME--LDENLLRGVFGYGFEEPSAIQQ---RAIMPIIEGH--- 60
Query: 220 NRKLFTRRVGDILVNASTGSGKTLAYSVPLVQILRSRTVNKVRAIILVPTKILIHQVYDC 279
D+L A +G+GKT +S+ +Q + + +V +A++L PT+ L Q+
Sbjct: 61 ----------DVLAQAQSGTGKTGTFSIAALQRIDT-SVKAPQALMLAPTRELALQIQKV 109
Query: 280 LSKLSQGTSLNVSMSKLENSLKEEHNKFLYNSPDILIITPGRLVDHLQMESFDLKTLKFL 339
+ L+ + V S E+ I++ TPGR+ D++Q F +K
Sbjct: 110 VMALAFHMDIKVHACIGGTSFVEDAEGL--RDAQIVVGTPGRVFDNIQRRRFRTDKIKMF 167
Query: 340 VLDEADRLLNQSFQNWNQVLFHHLTNDKQDKRPGNVIKMVFSATLTTNAEKLYNLYLHNP 399
+LDEAD +L+ F+ +F L P ++ SAT+ + ++ ++ NP
Sbjct: 168 ILDEADEMLSSGFKEQIYQIFTLL--------PPTTQVVLLSATMPNDVLEVTTKFMRNP 219
Query: 400 KIFLTDSVKLYSIPKKLQELNVNIPTAKSLFKPLLLLRIIHDIKSSASRNAKILVF---- 455
L +L + +++ VN+ + ++ L D+ S S ++
Sbjct: 220 VRILVKKDELTL--EGIKQFYVNVEEEEYKYECLT------DLYDSISVTQAVIFCNTRR 271
Query: 456 -VKSNEASIRLESLLHAMLGSGIIEDEYNMFLXXXXXXXXXXXXRKLIQEFASSEQKKSV 514
V+ +R + + + S + + E + +++EF S + +
Sbjct: 272 KVEELTTKLRNDKFTVSAIYSDLPQQERDT----------------IMKEFRSGSSR--I 313
Query: 515 LISTDIMARGIDINEITHVINYDLPISSQQYVHRCGRTARANTEGIAINLLVGKGE---- 570
LISTD++ARGID+ +++ VINYDLP + + Y+HR GR R +G+AIN + +
Sbjct: 314 LISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMR 373
Query: 571 --QKFWSQHIDTDLSRDI 586
+KF+S I+ +L DI
Sbjct: 374 ELEKFYSTQIE-ELPSDI 390
>Hs4503531 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 407
Score = 115 bits (288), Expect = 2e-25
Identities = 87/342 (25%), Positives = 157/342 (45%), Gaps = 42/342 (12%)
Query: 230 DILVNASTGSGKTLAYSVPLVQILRSRTVNKVRAIILVPTKILIHQVYDCLSKLSQGTSL 289
D++ A +G+GKT +++ ++Q L + +A++L PT+ L Q+ + L
Sbjct: 72 DVIAQAQSGTGKTATFAISILQQLEIE-FKETQALVLAPTRELAQQIQKVILALGDYMGA 130
Query: 290 NVSMSKLENSLKEEHNKFLYNSPDILIITPGRLVDHLQMESFDLKTLKFLVLDEADRLLN 349
+++ E K +P I++ TPGR+ D L K +K VLDEAD +L+
Sbjct: 131 TCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLS 190
Query: 350 QSFQNWNQVLFHHLTNDKQDKRPGNVIKMVF-SATLTTNAEKLYNLYLHNPKIFLTDSVK 408
+ F++ +F L I++VF SAT+ T+ ++ ++ +P L +
Sbjct: 191 RGFKDQIYEIFQKLNTS---------IQVVFASATMPTDVLEVTKKFMRDPIRILVKKEE 241
Query: 409 LYSIPKKLQELNV-----NIPTAKSLFKPLLLLRIIHDIKSSASRNAKILVFVKSNEASI 463
L K +NV + T L++ L + + + +F+ +
Sbjct: 242 LTLEGIKQFYINVEREEWKLDTLCDLYETLTITQAV--------------IFLNTRRKVD 287
Query: 464 RLESLLHAMLGSGIIEDEYNMFLXXXXXXXXXXXXRKLIQEFASSEQKKSVLISTDIMAR 523
L +HA + + +++EF S + VLI+TD++AR
Sbjct: 288 WLTEKMHAR----------DFTVSALHGDMDQKERDVIMREFRSGSSR--VLITTDLLAR 335
Query: 524 GIDINEITHVINYDLPISSQQYVHRCGRTARANTEGIAINLL 565
GID+ +++ VINYDLP + + Y+HR GR R +G+AIN +
Sbjct: 336 GIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINFV 377
>At3g61240 [A] KOG0326 ATP-dependent RNA helicase
Length = 498
Score = 115 bits (288), Expect = 2e-25
Identities = 119/442 (26%), Positives = 200/442 (44%), Gaps = 66/442 (14%)
Query: 146 LKLLDPSTYKSTAWDAATKIHYDSKMVKQFDSYEGELDARLLKNITSNFSSETFPIQTIL 205
L+L P T TA ATK + +F+ Y + D LLK I + PIQ
Sbjct: 104 LRLPPPDTRYQTADVTATKGN-------EFEDYFLKRD--LLKGIYEKGFEKPSPIQ--- 151
Query: 206 FDKVLPLLNSSFKANRKLFTRRVGDILVNASTGSGKTLAYSVPLVQILRSRTVNKVRAII 265
++ +P+ + DIL A G+GKT A+ +P+++ + N ++A+I
Sbjct: 152 -EESIPIALTG------------SDILARAKNGTGKTGAFCIPVLEKIDPNN-NVIQAMI 197
Query: 266 LVPTKILIHQVYDCLSKLSQGTSLNVSMSKLENSLKEEHNKFLYNSPDILIITPGRLVDH 325
LVPT+ L Q +LS+ ++ V ++ SL+++ + L+ +L+ TPGR++D
Sbjct: 198 LVPTRELALQTSQVCKELSKYLNIQVMVTTGGTSLRDDIMR-LHQPVHLLVGTPGRILDL 256
Query: 326 LQMESFDLKTLKFLVLDEADRLLNQSFQNWNQVLFHHLTNDKQDKRPGNVIKMVFSATLT 385
+ LK LV+DEAD+LL+ FQ + L L ++Q ++FSAT
Sbjct: 257 TKKGVCVLKDCAMLVMDEADKLLSAEFQPSLEELIQFLPQNRQ--------FLMFSATFP 308
Query: 386 TNAEKLYNLYLHNPKIF-LTDSVKLYSIPK--KLQELNVNIPTAKSLFKPLLLLRIIHDI 442
+ + +L P + L D + L + + E + +LF L+I I
Sbjct: 309 VTVKAFKDRHLRKPYVINLMDQLTLMGVTQYYAFVEERQKVHCLNTLFSK---LQINQSI 365
Query: 443 KSSASRNAKILVFVKSNEASIRLESLLHAMLGSGIIEDEYNMFLXXXXXXXXXXXXRKLI 502
S N L+ K E +HA + ++D N ++
Sbjct: 366 IFCNSVNRVELLAKKITELGYSC-FYIHAKM----VQDHRN----------------RVF 404
Query: 503 QEFASSEQKKSVLISTDIMARGIDINEITHVINYDLPISSQQYVHRCGRTARANTEGIAI 562
EF + + L+ TD+ RGIDI + VIN+D P +S+ Y+HR GR+ R G+A+
Sbjct: 405 HEFRNGACRN--LVCTDLFTRGIDIQAVNVVINFDFPRTSESYLHRVGRSGRFGHLGLAV 462
Query: 563 NLLVGKGEQKFW--SQHIDTDL 582
NL+ + K + Q + T++
Sbjct: 463 NLVTYEDRFKMYQTEQELGTEI 484
>CE23814 [A] KOG0340 ATP-dependent RNA helicase
Length = 696
Score = 115 bits (287), Expect = 3e-25
Identities = 96/369 (26%), Positives = 174/369 (47%), Gaps = 37/369 (10%)
Query: 207 DKVL--PLLNSSFKANRKLFTRRVGDILVN---ASTGSGKTLAYSVPLVQILRSRTVNKV 261
DK+L PL + F + F R++ A TG+GKTLA+++P++Q L S +
Sbjct: 157 DKILKFPLKINKFSRKIRFFYRKIKKTTEEKCCARTGTGKTLAFAIPILQKL-SVDPYGI 215
Query: 262 RAIILVPTKILIHQVYDCLSKLSQGTSLNVSMSKLENSLKEEHNKFLYNSPDILIITPGR 321
A+IL PT+ L Q+ + + L + +L S+ SL + + L P +++ TPGR
Sbjct: 216 YALILTPTRELAFQIAEQFTALGKPITLKCSVIVGGRSLIHQARE-LSERPHVVVATPGR 274
Query: 322 LVDHLQMESFDL----KTLKFLVLDEADRLLNQSFQNWNQVLFHHLTNDKQDKRPGNVIK 377
L D ++ + + K ++F VLDEADR+L + + + +F ++ +Q
Sbjct: 275 LADLIESDPDTIAKVFKKIQFFVLDEADRMLEGQYNDQLKPIFESISEKRQT-------- 326
Query: 378 MVFSATLTTNAEKLYNLYLHNPKIFLTDSVKLYSIPKKLQELNVNIPTA-KSLFKPLLLL 436
++ SAT+T N L+ + P F S +L++ V P A K +
Sbjct: 327 LLLSATITNNINMLHRVSTRKPYFFEDKGKDDESTVDRLEQKYVVCPVAVKDAY------ 380
Query: 437 RIIHDIKSSASRNAKILVFVKSNEASIRLESLLHAMLGSGIIEDEYNMFLXXXXXXXXXX 496
+++ +K+ + +N K V + + ++L + G G
Sbjct: 381 -LVYVVKNYSEKNPKSSVMIFAQTCR-ECQALAYMFEGLGF---------RVGSLHSQIP 429
Query: 497 XXRKLIQEFASSEQKKSVLISTDIMARGIDINEITHVINYDLPISSQQYVHRCGRTARAN 556
++L A + V+I TD+ +RG+DI + V+N+++P + Y+HR GR+ARA
Sbjct: 430 QKQRLAALSAFRSKTLQVIICTDVASRGLDIPHVDLVVNHNVPQCPKTYIHRVGRSARAG 489
Query: 557 TEGIAINLL 565
G A++ +
Sbjct: 490 RFGSALSFV 498
>CE11190 [A] KOG0347 RNA helicase
Length = 746
Score = 115 bits (287), Expect = 3e-25
Identities = 110/375 (29%), Positives = 174/375 (46%), Gaps = 47/375 (12%)
Query: 230 DILVNASTGSGKTLAYSVPLV----------QILRSRTVNKVRAIILVPTKILIHQVYDC 279
D+L A TGSGKTLA+ +PLV Q S V RA+I+ PT+ L+ Q+
Sbjct: 195 DVLGAAETGSGKTLAFGIPLVARLLESSDDSQETESTEVRGPRALIVAPTRELVIQIMKH 254
Query: 280 LSKLSQGTSLNVSMSKLENSLKEEHNKFL-YNSPDILIITPGRLVDHLQMES-----FDL 333
++ L T L ++ S + + + + + PDI++ TPGRL +Q +
Sbjct: 255 INALISTTQL-IATSIVGGLAQVKQERIISQQRPDIVVATPGRLWAMMQEAETGEFLAEW 313
Query: 334 KTLKFLVLDEADRLLNQSFQNWNQVLFHHLTNDKQDKRPGNVIKMVFSATLT-------- 385
K LK LV+DE DR++ + + L H L ++ + +VFSATLT
Sbjct: 314 KDLKCLVVDETDRMVEEGY---FAELTHILNKIHEESEKEKLQTLVFSATLTFAKAQDVA 370
Query: 386 -TNAEKLYNLYLHNPKIFLTDSVKLYSIPKKLQELNVNIPTAKSLFKPL-----LLLRII 439
+K L L L K+ +L + TA L + LL +
Sbjct: 371 EEEKKKAKELSSQQKIQRLIKLTGLRENKHKVIDLTRQMGTAGCLVEARINCGNLLEKDT 430
Query: 440 HDIKSSASRNAKILVFVKSNEASIRLESLLHAMLGSGIIEDEYNMFLXXXXXXXXXXXXR 499
+ + +VFV S +A+ RL S+L ++ N+
Sbjct: 431 SLVYLLTRYPGRTIVFVNSIDAARRLYSVLKSV----------NIDPMILHAKMIQKQRL 480
Query: 500 KLIQEFASSEQKKSVLISTDIMARGIDINEITHVINYDLPISSQQYVHRCGRTARANTEG 559
K +++F SE K +VL++TD+ ARG+DI I HVI+Y +P + Y+HR GRTARA+ G
Sbjct: 481 KNLEKF--SESKNAVLLATDVAARGLDIQGIDHVIHYQVPKKVEIYIHRSGRTARASHRG 538
Query: 560 IAINLLVGKGEQKFW 574
+ + +LV ++F+
Sbjct: 539 LTV-VLVDPPSRQFY 552
>At2g45810 [A] KOG0326 ATP-dependent RNA helicase
Length = 528
Score = 115 bits (287), Expect = 3e-25
Identities = 101/358 (28%), Positives = 166/358 (46%), Gaps = 41/358 (11%)
Query: 230 DILVNASTGSGKTLAYSVPLVQILRSRTVNKVRAIILVPTKILIHQVYDCLSKLSQGTSL 289
DIL A G+GKT A+ +P ++ + N ++A+ILVPT+ L Q +LS+ +
Sbjct: 193 DILARAKNGTGKTGAFCIPTLEKIDPEN-NVIQAVILVPTRELALQTSQVCKELSKYLKI 251
Query: 290 NVSMSKLENSLKEEHNKFLYNSPDILIITPGRLVDHLQMESFDLKTLKFLVLDEADRLLN 349
V ++ SL+++ + LY +L+ TPGR++D + LK LV+DEAD+LL+
Sbjct: 252 EVMVTTGGTSLRDDIMR-LYQPVHLLVGTPGRILDLAKKGVCVLKDCAMLVMDEADKLLS 310
Query: 350 QSFQNWNQVLFHHLTNDKQDKRPGNVIKMVFSATLTTNAEKLYNLYLHNPKIF-LTDSVK 408
FQ + L L +Q ++FSAT + + YL P I L D +
Sbjct: 311 VEFQPSIEELIQFLPESRQ--------ILMFSATFPVTVKSFKDRYLKKPYIINLMDQLT 362
Query: 409 LYSIPK--KLQELNVNIPTAKSLFKPLLLLRIIHDIKSSASRNAKILVFVKSNEASIRLE 466
L + + E + +LF L+I I S N L+ K E
Sbjct: 363 LMGVTQYYAFVEERQKVHCLNTLFSK---LQINQSIIFCNSVNRVELLAKKITELGYSC- 418
Query: 467 SLLHAMLGSGIIEDEYNMFLXXXXXXXXXXXXRKLIQEFASSEQKKSVLISTDIMARGID 526
+HA + ++D N ++ +F + + L+ TD+ RGID
Sbjct: 419 FYIHAKM----VQDHRN----------------RVFHDFRNGACRN--LVCTDLFTRGID 456
Query: 527 INEITHVINYDLPISSQQYVHRCGRTARANTEGIAINLLVGKGEQKFW--SQHIDTDL 582
I + VIN+D P +S+ Y+HR GR+ R G+A+NL+ + K + Q + T++
Sbjct: 457 IQAVNVVINFDFPRTSESYLHRVGRSGRFGHLGLAVNLVTYEDRFKMYQTEQELGTEI 514
>Hs4503529 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 406
Score = 114 bits (286), Expect = 3e-25
Identities = 87/363 (23%), Positives = 168/363 (45%), Gaps = 42/363 (11%)
Query: 230 DILVNASTGSGKTLAYSVPLVQILRSRTVNKVRAIILVPTKILIHQVYDCLSKLSQGTSL 289
D++ A +G+GKT +++ ++Q + + +A++L PT+ L Q+ + L
Sbjct: 71 DVIAQAQSGTGKTATFAISILQQIEL-DLKATQALVLAPTRELAQQIQKVVMALGDYMGA 129
Query: 290 NVSMSKLENSLKEEHNKFLYNSPDILIITPGRLVDHLQMESFDLKTLKFLVLDEADRLLN 349
+ +++ E K +P I++ TPGR+ D L K +K VLDEAD +L+
Sbjct: 130 SCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLS 189
Query: 350 QSFQNWNQVLFHHLTNDKQDKRPGNVIKMVFSATLTTNAEKLYNLYLHNPKIFLTDSVKL 409
+ F++ +F L ++ Q ++ SAT+ ++ ++ ++ +P L +L
Sbjct: 190 RGFKDQIYDIFQKLNSNTQ--------VVLLSATMPSDVLEVTKKFMRDPIRILVKKEEL 241
Query: 410 YSIPKKLQELNV-----NIPTAKSLFKPLLLLRIIHDIKSSASRNAKILVFVKSNEASIR 464
+ +NV + T L++ L + + + +F+ +
Sbjct: 242 TLEGIRQFYINVEREEWKLDTLCDLYETLTITQAV--------------IFINTRRKVDW 287
Query: 465 LESLLHAMLGSGIIEDEYNMFLXXXXXXXXXXXXRKLIQEFASSEQKKSVLISTDIMARG 524
L +HA + + +++EF S + VLI+TD++ARG
Sbjct: 288 LTEKMHAR----------DFTVSAMHGDMDQKERDVIMREFRSGSSR--VLITTDLLARG 335
Query: 525 IDINEITHVINYDLPISSQQYVHRCGRTARANTEGIAINLLVGKGEQKFWSQHIDTDLSR 584
ID+ +++ VINYDLP + + Y+HR GR R +G+AIN++ E K + I+T +
Sbjct: 336 IDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVT--EEDKRTLRDIETFYNT 393
Query: 585 DID 587
I+
Sbjct: 394 SIE 396
>Hs11321632 [A] KOG0339 ATP-dependent RNA helicase
Length = 709
Score = 114 bits (286), Expect = 3e-25
Identities = 99/365 (27%), Positives = 174/365 (47%), Gaps = 43/365 (11%)
Query: 230 DILVNASTGSGKTLAYSVP-LVQILRSRTVNKVR---AIILVPTKILIHQVYDCLSKLSQ 285
D++ A TGSGKT A+ P L+ I+ + + A+I+ PT+ L Q++ + +
Sbjct: 173 DMIGIAKTGSGKTAAFIWPMLIHIMDQKELEPGDGPIAVIVCPTRELCQQIHAECKRFGK 232
Query: 286 GTSLNVSMSKLENSLKEEHNKFLYNSPDILIITPGRLVDHLQMESFDLKTLKFLVLDEAD 345
+L S++ E K L +I++ TPGRL+DH++ ++ +L+ + +LV DEAD
Sbjct: 233 AYNLR-SVAVYGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATNLQRVSYLVFDEAD 291
Query: 346 RLLNQSFQNWNQVLFHHLTNDKQDKRPGNVIKMVFSATLTTNAEKLYNLYLHNPKIFLTD 405
R+ + F+ + + H+ D+Q ++FSAT EKL + L D
Sbjct: 292 RMFDMGFEYQVRSIASHVRPDRQT--------LLFSATFRKKIEKL-------ARDILID 336
Query: 406 SVKLYSIPKKLQELNVNIPTAKSLFKPLLLLRIIHDIKSSASRNAKILV-FVKSNEASIR 464
+++ + + E N ++ ++ I+H S + + LV F S +
Sbjct: 337 PIRV--VQGDIGEANEDVTQ---------IVEILHSGPSKWNWLTRRLVEFTSSGSVLLF 385
Query: 465 LESLLHAM-LGSGIIEDEYNMFLXXXXXXXXXXXXRKLIQEFASSEQKKSVLISTDIMAR 523
+ +A L + + ++ +N+ L K+I +F + VL++TD+ AR
Sbjct: 386 VTKKANAEELANNLKQEGHNLGLLHGDMDQSER--NKVISDFKKKDIP--VLVATDVAAR 441
Query: 524 GIDINEITHVINYDLPISSQQYVHRCGRTARANTEGIAINLLVGKGEQKFWSQHIDTDLS 583
G+DI I VINYD+ + HR GRT RA +G+A LL K + DL
Sbjct: 442 GLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPK------DSNFAGDLV 495
Query: 584 RDIDG 588
R+++G
Sbjct: 496 RNLEG 500
>YKR024c [A] KOG0348 ATP-dependent RNA helicase
Length = 742
Score = 114 bits (285), Expect = 4e-25
Identities = 95/390 (24%), Positives = 176/390 (44%), Gaps = 46/390 (11%)
Query: 230 DILVNASTGSGKTLAYSVPLVQILRSRTVNKVR-----AIILVPTKILIHQVYDCLSKLS 284
D ++A TGSGKTL+Y +P++ + + + R A+++ PT+ L Q+Y S L
Sbjct: 186 DFFIHAQTGSGKTLSYLLPIISTILNMDTHVDRTSGAFALVIAPTRELASQIYHVCSTLV 245
Query: 285 QGTSLNVSMSKLENSLKEEHNKFLYNSPDILIITPGRLVDHLQ----MESFDLKTLKFLV 340
V + K+ L + +I TPGR++DHLQ ++ ++L+++V
Sbjct: 246 SCCHYLVPCLLIGGERKKSEKARLRKGCNFIIGTPGRVLDHLQNTKVIKEQLSQSLRYIV 305
Query: 341 LDEADRLLNQSFQNWNQVLFH-----HLTNDKQDKRPGNVIKMVFSATLTTNAEKLYNLY 395
LDE D+L+ F + + ++K K P ++ M+ SATLT +L N+
Sbjct: 306 LDEGDKLMELGFDETISEIIKIVHDIPINSEKFPKLPHKLVHMLCSATLTDGVNRLRNVA 365
Query: 396 LHNPKIFLTDSVKLYSI-----PKKLQELNVNIPTAKSLFKPLLLLRIIHDIKSSA--SR 448
L + K+ + K I + LQ + + P + + L I D +S S+
Sbjct: 366 LKDYKLISNGTKKDSDIVTVAPDQLLQRITIVPPKLRLVTLAATLNNITKDFIASGQQSK 425
Query: 449 NAKILVFVKSNEA---------------------SIRLESLLHAMLGSGIIEDEYNMFLX 487
+ +VFV +++ S+RL + + M + ++ +
Sbjct: 426 TLRTIVFVSCSDSVEFHYDAFSGSDGHHKNLTGDSVRLLTKGNTMFPCFSDSRDPDVVIY 485
Query: 488 XXXXXXXXXXXRKLIQEFA----SSEQKKSVLISTDIMARGIDINEITHVINYDLPISSQ 543
+Q FA +++ K ++ TD+ +RG+D+ + VI D P + +
Sbjct: 486 KLHGSLSQQMRTSTLQHFARDNEATKGKHLIMFCTDVASRGLDLPHVGSVIELDPPFAVE 545
Query: 544 QYVHRCGRTARANTEGIAINLLVGKGEQKF 573
++HR GRTARA +G ++ L+ E+K+
Sbjct: 546 DHLHRVGRTARAGEKGESLLFLLPGEEEKY 575
>YDR243c [A] KOG0333 U5 snRNP-like RNA helicase subunit
Length = 588
Score = 114 bits (285), Expect = 4e-25
Identities = 98/351 (27%), Positives = 170/351 (47%), Gaps = 40/351 (11%)
Query: 230 DILVNASTGSGKTLAYSVP-LVQILRS-------RTVNKVRAIILVPTKILIHQVYDCLS 281
D L ASTGSGKTLA+ +P L+++ RS + ++ +A+IL PT+ L+ Q+
Sbjct: 216 DFLGVASTGSGKTLAFVIPILIKMSRSPPRPPSLKIIDGPKALILAPTRELVQQIQKETQ 275
Query: 282 KLSQGTSLNVS-----MSKLENSLKEEHNKFLYNSPDILIITPGRLVDHLQMESFDLKTL 336
K+++ S + +S + EE + L DIL+ TPGRL+D L+ +K +
Sbjct: 276 KVTKIWSKESNYDCKVISIVGGHSLEEISFSLSEGCDILVATPGRLIDSLENHLLVMKQV 335
Query: 337 KFLVLDEADRLLNQSFQNWNQVLFHHLTNDKQDKRPGNVIKMVFSATLTTNAEKLYNLYL 396
+ LVLDEAD++++ F++ QV D N ++F+AT+T EK+ Y+
Sbjct: 336 ETLVLDEADKMIDLGFED--QVTNILTKVDINADSAVNRQTLMFTATMTPVIEKIAAGYM 393
Query: 397 HNPKIFLTDSVKLYSIP--KKLQELNVNIPTAKSLFKPLLLLRIIHDIKSSASRNAKILV 454
P ++ T V+ S P +++ E N KP++ A + I++
Sbjct: 394 QKP-VYATIGVETGSEPLIQQVVEYADNDEDKFKKLKPIV-----------AKYDPPIII 441
Query: 455 FVKSNEASIRLESLLHAMLGSGIIEDEYNMFLXXXXXXXXXXXXRKLIQEFASSEQKKSV 514
F+ + + L + E NM + +Q F ++ K +
Sbjct: 442 FINYKQTADWLAEKF---------QKETNMKVTILHGSKSQEQREHSLQLFRTN--KVQI 490
Query: 515 LISTDIMARGIDINEITHVINYDLPISSQQYVHRCGRTARANTEGIAINLL 565
+I+T++ ARG+DI ++ V+N+ + Y+HR GRT RA EG A++ +
Sbjct: 491 MIATNVAARGLDIPNVSLVVNFQISKKMDDYIHRIGRTGRAANEGTAVSFV 541
>YBR142w [A] KOG0347 RNA helicase
Length = 773
Score = 114 bits (285), Expect = 4e-25
Identities = 104/371 (28%), Positives = 175/371 (47%), Gaps = 40/371 (10%)
Query: 230 DILVNASTGSGKTLAYSVPLVQILRSRTVNKVR---AIILVPTKILIHQVYDCLSKLSQG 286
D++ ASTGSGKTLAY +P+V+ L S K + ++I PT+ L HQV D L K+ +
Sbjct: 210 DVMGKASTGSGKTLAYGIPIVEKLISNFSQKNKKPISLIFTPTRELAHQVTDHLKKICEP 269
Query: 287 TSLNVSMSKLE----NSLKEEHNKFLY-NSPDILIITPGRLVDHLQMESFDLK---TLKF 338
S L S++++ Y NS I+I TPGR ++ L+ ++ +K +
Sbjct: 270 VLAKSQYSILSLTGGLSIQKQQRLLKYDNSGQIVIATPGRFLELLEKDNTLIKRFSKVNT 329
Query: 339 LVLDEADRLLNQS-FQNWNQVLFHHLTNDKQDKRPGNVIK-----MVFSATLTTNA-EKL 391
L+LDEADRLL F + +++ H L ++++ ++FSAT + + +KL
Sbjct: 330 LILDEADRLLQDGHFDEFEKIIKHLLVERRKNRENSEGSSKIWQTLIFSATFSIDLFDKL 389
Query: 392 YNLYLHNPKIFLTDSVKLYSIPKKLQ----------------ELNVNIPTAKSLFKPLLL 435
+ + F + +L ++ + L E V+ +SL + L
Sbjct: 390 SSSRQVKDRRFKNNEDELNAVIQHLMSKIHFNSKPVIIDTNPESKVSSQIKESLIECPPL 449
Query: 436 LRIIHDIKSSASRNAKILVFVKSNEASIRLESLLHAMLGSGIIE-----DEYNMFLXXXX 490
R ++ L+F + ++ +L L+ LG + + N
Sbjct: 450 ERDLYCYYFLTMFPGTTLIFCNAIDSVKKLTVYLN-NLGIPAFQIHSSMTQKNRLKSLER 508
Query: 491 XXXXXXXXRKLIQEFASSEQKKSVLISTDIMARGIDINEITHVINYDLPISSQQYVHRCG 550
+ + S Q +VLI++D+ ARG+DI + HVI+Y LP S+ Y+HR G
Sbjct: 509 FKQQSAKQKTINHSNPDSVQLSTVLIASDVAARGLDIPGVQHVIHYHLPRSTDIYIHRSG 568
Query: 551 RTARANTEGIA 561
RTARA +EG++
Sbjct: 569 RTARAGSEGVS 579
>7293369 [A] KOG0343 RNA Helicase
Length = 805
Score = 114 bits (285), Expect = 4e-25
Identities = 113/400 (28%), Positives = 176/400 (43%), Gaps = 71/400 (17%)
Query: 230 DILVNASTGSGKTLAYSVPLVQILR----SRTVNKVRAIILVPTKILIHQVYDCLSKLSQ 285
D+L A TGSGKTLA+ +P+++ L SRT + V AII+ PT+ L +Q+++ L K+ +
Sbjct: 111 DVLGAAITGSGKTLAFLIPVLEHLFMNKWSRT-DGVGAIIISPTRELAYQIFETLKKVGK 169
Query: 286 GTSLNVSMSKLENSLKEEHNKFLYNSPDILIITPGRLVDHLQMES-FDLKTLKFLVLDEA 344
+ + +LK E + + +ILI TPGRL+ H+ F+ T++ LVLDEA
Sbjct: 170 HHDFSAGLIIGGKNLKFERTRM--DQCNILICTPGRLLQHMDENPLFNTSTMEMLVLDEA 227
Query: 345 DRLLNQSFQNWNQVLFHHLTNDKQDKRPGNVIKMVFSATLTTNAEKLYNLYLHNP----- 399
DR L+ FQ + + +Q ++FSAT T + L L L +P
Sbjct: 228 DRCLDMGFQKTLNSIIENFPPVRQ--------TLLFSATQTNTVQDLARLNLKDPVYVGY 279
Query: 400 -----------KIFLTDSVKLYSIPKKLQE------LNVNIPTAKSLFKPLLLLRIIHDI 442
T + + ++P+ LQ+ L I S K L +II +
Sbjct: 280 GGATPREEPSASTKKTPNTAVLAVPELLQQSYVVLNLEDKITMLWSFIKNHLKQKIIVFV 339
Query: 443 KSSASRNAKILVFVKSNEAS--IRLESLLHAMLGSGIIEDEYNMFLXXXXXXXXXXXXRK 500
S +F K S + L LH I ED FL
Sbjct: 340 ASCKQAKYLYEIFCKLRPGSPLLALYGTLHQDRRIAIYED----FL-------------- 381
Query: 501 LIQEFASSEQKKSVLISTDIMARGIDINEITHVINYDLPISSQQYVHRCGRTARANTEGI 560
+ V+ STD+ +RG+D + V+ D P QY+HR GR+AR T G
Sbjct: 382 --------RKSHVVMFSTDVASRGLDFPAVNWVVQLDCPEDVSQYIHRAGRSARNKTRGE 433
Query: 561 AINLLVGKGEQKFWSQHIDTDLSRDIDGYQPSAYLDEEKL 600
+ L++ E+++ + L+ DI Q +D +KL
Sbjct: 434 CL-LVLTPSEEEYMISALKEQLNIDIRCVQ----IDPKKL 468
>SPBC691.04 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 535
Score = 114 bits (284), Expect = 6e-25
Identities = 111/402 (27%), Positives = 184/402 (45%), Gaps = 37/402 (9%)
Query: 232 LVNASTGSGKTLAYS-VPLVQILRSR---TVNKVRAIILVPTKILIHQVYDCLSKLSQGT 287
+V A TG+GKTLA+ V +L+ + +K+ ++IL PT+ L Q+++ KL+ GT
Sbjct: 80 VVQAKTGTGKTLAFLLVAFKDVLKGKPRLNSSKIHSVILSPTRELALQIFEEARKLTYGT 139
Query: 288 SLNVSMSKLENSLKEEHNKFLYNSPDILIITPGRLVDHLQMESF--DLKTLKFLVLDEAD 345
+ VS + NS E N + ++LI TPGRL DHLQ L T F +LDEAD
Sbjct: 140 GIRVSYAIGGNSKMREENAIRRGNANLLIATPGRLEDHLQNPRILESLSTDSF-ILDEAD 198
Query: 346 RLLNQSFQNWNQVLFHHLTNDKQDKRPGNVIKMVFSATLTTNAEKLYNLYLHNP-KIFLT 404
RL++ F + +T K K+ FSAT+ ++ L K+
Sbjct: 199 RLMDMGFAESILNIHEAVTTTK-------TRKLCFSATMPPKVSNVFRGILGTDFKLINC 251
Query: 405 DSVKLYSIPKKLQELNVNIPTAKSLFKPLLLLRIIHDIKSSASRNAKILVFVKSNEASIR 464
+++ + + K L LL+ + +S++ +++I+VF
Sbjct: 252 LDPNEPPTHERVPQFVIETKLDKVFSSSLSLLQQL----TSSNPSSRIIVF--------- 298
Query: 465 LESLLHAMLGSGIIEDEYNMFLXXXXXXXXXXXXRKLIQEFASSEQKKSVLISTDIMARG 524
L ++ G++E+ + R + + F + +L +TD++ARG
Sbjct: 299 LPTISMVDFVGGVLENHLKIPCFILHSGLTTAQRRSITESFRKCQ--SGILFATDVVARG 356
Query: 525 IDINEITHVINYDLPISSQQYVHRCGRTARANTEGIAINLLVGKGEQKFWSQHIDTDLSR 584
+D IT V+ P ++ Y+HR GRT RA G A +L+ + E+ F + L R
Sbjct: 357 MDFPNITQVVQITGPSNTDDYIHRIGRTGRAGKTGEAYLILL-EQEKPFLNSIKHLPLKR 415
Query: 585 DIDGYQPSAYLDEEKLSELFS-IEDTLKDTYKGCIKQLQTSK 625
+P L ++ LS L S IE + K + +K L SK
Sbjct: 416 AT--IEP---LSDQALSTLRSDIEKSSKFSRTNALKTLYGSK 452
>At5g62190 [A] KOG0331 ATP-dependent RNA helicase
Length = 671
Score = 114 bits (284), Expect = 6e-25
Identities = 103/394 (26%), Positives = 177/394 (44%), Gaps = 58/394 (14%)
Query: 182 LDARLLKNITSNFSSETFPIQTILFDKVLPLLNSSFKANRKLFTRRVGDILVNASTGSGK 241
+ A L + + +N FPIQ FD VL D++ A TG GK
Sbjct: 103 ISAPLREKLKANGIEALFPIQASTFDMVLD----------------GADLVGRARTGQGK 146
Query: 242 TLAYSVPLVQILRSRTVNKVR---------AIILVPTKILIHQVYDCLSKLSQGTSLNVS 292
TLA+ +P+++ L + R ++L+PT+ L QV + G SL +S
Sbjct: 147 TLAFVLPILESLVNGPAKSKRKMGYGRSPSVLVLLPTRELAKQVAADFD--AYGGSLGLS 204
Query: 293 MSKLE--NSLKEEHNKFLYNSPDILIITPGRLVDHLQMESFDLKTLKFLVLDEADRLLNQ 350
L +S + K L DI++ TPGR+ DH++ ++ D L+F VLDEAD +L
Sbjct: 205 SCCLYGGDSYPVQEGK-LKRGVDIVVGTPGRIKDHIERQNLDFSYLQFRVLDEADEMLRM 263
Query: 351 SFQNWNQVLFHHLTNDKQDKRPGNVIKMVFSATLTTNAEKLYNLYLHNPKIFLTDSVKLY 410
F +++ + + + V ++FSATL + + + N +L + + D V
Sbjct: 264 GFVEDVELILGKVEDSTK------VQTLLFSATLPSWVKNISNRFLKRDQKTI-DLVGND 316
Query: 411 SIPKKLQELNVNIPTAKSLFKPLLLLRIIHDIKSSASRNAKILVFVKSNEASIRLESLLH 470
+ ++ IP K+ + R+I DI S S + ++F E +++ L
Sbjct: 317 KMKASNSVRHIAIPCNKAA-----MARLIPDIISCYSSGGQTIIFA---ETKVQVSELSG 368
Query: 471 AMLGSGIIEDEYNMFLXXXXXXXXXXXXRKLIQEFASSEQKKSVLISTDIMARGIDINEI 530
+ GS + E ++ + K + L++T++ ARG+DIN++
Sbjct: 369 LLDGSRALHGEIPQ-------------SQREVTLAGFRNGKFATLVATNVAARGLDINDV 415
Query: 531 THVINYDLPISSQQYVHRCGRTARANTEGIAINL 564
+I + P + Y+HR GRT RA G+A+ L
Sbjct: 416 QLIIQCEPPREVEAYIHRSGRTGRAGNTGVAVTL 449
>At2g47330 [A] KOG0339 ATP-dependent RNA helicase
Length = 748
Score = 114 bits (284), Expect = 6e-25
Identities = 103/356 (28%), Positives = 162/356 (44%), Gaps = 35/356 (9%)
Query: 230 DILVNASTGSGKTLAYSVPL-VQILRSRTVNKVRA---IILVPTKILIHQVYDCLSKLSQ 285
D++ A TGSGKT A+ +P+ V I+ + + +I PT+ L HQ++ K S+
Sbjct: 267 DVIGIAKTGSGKTAAFVLPMIVHIMDQPELQRDEGPIGVICAPTRELAHQIFLEAKKFSK 326
Query: 286 GTSLNVSMSKLENSLKEEHNKFLYNSPDILIITPGRLVDHLQMESFDLKTLKFLVLDEAD 345
L VS + K E K L +I++ TPGRL+D L+M++ + +LVLDEAD
Sbjct: 327 AYGLRVS-AVYGGMSKHEQFKELKAGCEIVVATPGRLIDMLKMKALTMMRASYLVLDEAD 385
Query: 346 RLLNQSFQNWNQVLFHHLTNDKQDKRPGNVIKMVFSATLTTNAEKLYNLYLHNPKIFLTD 405
R+ + F+ + + + D+Q ++FSAT+ EKL L +P
Sbjct: 386 RMFDLGFEPQVRSIVGQIRPDRQ--------TLLFSATMPWKVEKLAREILSDPIRVTVG 437
Query: 406 SVKLYSIPKKLQELNVNIPTAKSLFKPLLLLRIIHDIKSSASRNAKILVFVKSNEASIRL 465
V + + Q +NV A+ L P LL ++ I +LVF +
Sbjct: 438 EVGMAN-EDITQVVNVIPSDAEKL--PWLLEKLPGMID-----EGDVLVFASKKATVDEI 489
Query: 466 ESLLHAMLGSGIIEDEYNMFLXXXXXXXXXXXXR-KLIQEFASSEQKKSVLISTDIMARG 524
E+ L N F R + +Q+F S VLI+TD+ ARG
Sbjct: 490 EAQL-----------TLNSFKVAALHGDKDQASRMETLQKFKSGVH--HVLIATDVAARG 536
Query: 525 IDINEITHVINYDLPISSQQYVHRCGRTARANTEGIAINLLVGKGEQKFWSQHIDT 580
+DI + V+NYD+ +VHR GRT RA LV + E +F + +++
Sbjct: 537 LDIKSLKTVVNYDIAKDMDMHVHRIGRTGRAGDRDGVAYTLVTQREARFAGELVNS 592
>Hs9507237 [A] KOG0335 ATP-dependent RNA helicase
Length = 724
Score = 113 bits (283), Expect = 8e-25
Identities = 92/346 (26%), Positives = 166/346 (47%), Gaps = 42/346 (12%)
Query: 230 DILVNASTGSGKTLAYSVPLVQIL--------RSRTVNKVRAIILVPTKILIHQVYDCLS 281
D++ A TGSGKT A+ +P++ + R + + + II+ PT+ L++Q+Y
Sbjct: 327 DLMACAQTGSGKTAAFLLPILAHMMHDGITASRFKELQEPECIIVAPTRELVNQIYLEAR 386
Query: 282 KLSQGTSLNVSM----SKLENSLKEEHNKFLYNSPDILIITPGRLVDHLQMESFDLKTLK 337
K S GT + + ++L +S+++ + +IL TPGRL+D + E LK +K
Sbjct: 387 KFSFGTCVRAVVIYGGTQLGHSIRQ-----IVQGCNILCATPGRLMDIIGKEKIGLKQIK 441
Query: 338 FLVLDEADRLLNQSFQNWNQVLFHHLTNDKQDKRPGNVIKMVFSATLTTNAEKLYNLYLH 397
+LVLDEADR+L+ F + L +++R ++FSAT ++L +L
Sbjct: 442 YLVLDEADRMLDMGFGPEMKKLISCPGMPSKEQRQ----TLMFSATFPEEIQRLAAEFLK 497
Query: 398 NPKIFLTDSVKLYSIPKKLQELNVNIPTAKSLFKPLLLLRIIHDIKSSASRNAKILVFVK 457
+ +F V + + +++ + K L+ I+ +I + + +VFV+
Sbjct: 498 SNYLF----VAVGQVGGACRDVQQTVLQVGQFSKREKLVEILRNI-----GDERTMVFVE 548
Query: 458 SNEASIRLESLLHAMLGSGIIEDEYNMFLXXXXXXXXXXXXRKLIQEFASSEQKKSVLIS 517
+ + + + + L + + + + +F K VL++
Sbjct: 549 TKKKADFIATFL----------CQEKISTTSIHGDREQREREQALGDFRFG--KCPVLVA 596
Query: 518 TDIMARGIDINEITHVINYDLPISSQQYVHRCGRTARANTEGIAIN 563
T + ARG+DI + HVIN+DLP + +YVHR GRT R G AI+
Sbjct: 597 TSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAIS 642
>Hs21040371 [A] KOG0329 ATP-dependent RNA helicase
Length = 427
Score = 113 bits (283), Expect = 8e-25
Identities = 97/381 (25%), Positives = 178/381 (46%), Gaps = 47/381 (12%)
Query: 230 DILVNASTGSGKTLAYSVPLVQILRSRTVNKVRAIILVPTKILIHQV---YDCLSKLSQG 286
D+L A +G GKT + + +Q + +V +++ T+ L Q+ Y+ SK
Sbjct: 83 DVLCQAKSGMGKTAVFVLATLQQIEPVN-GQVTVLVMCHTRELAFQISKEYERFSKYMPS 141
Query: 287 TSLNVSMSKLENSLKEEHNKFLYNSPDILIITPGRLVDHLQMESFDLKTLKFLVLDEADR 346
++V L S+K++ N P +++ TPGR++ ++ SF LK +K VLDE D+
Sbjct: 142 VKVSVFFGGL--SIKKDEEVLKKNCPHVVVGTPGRILALVRNRSFSLKNVKHFVLDECDK 199
Query: 347 LLNQ-SFQNWNQVLFHHLTNDKQDKRPGNVIKMVFSATLTTNAEKLYNLYLHNP-KIFLT 404
+L Q + Q +F ++KQ M+FSATL+ + + ++ +P ++F+
Sbjct: 200 MLEQLDMRRDVQEIFRLTPHEKQC--------MMFSATLSKDIRPVCRKFMQDPMEVFVD 251
Query: 405 DSVKLYSIPKKLQELNVNIPTAKSLFKPLLLLRIIHDIKSSASRNAKILVFVKSNEASIR 464
D KL LQ+ V + ++ K LL ++ ++++FVKS + +
Sbjct: 252 DETKLTL--HGLQQYYVKLKDSEKNRKLFDLLDVLEF--------NQVIIFVKSVQRCMA 301
Query: 465 LESLLHAMLGSGIIEDEYNMFLXXXXXXXXXXXXRKLIQEFASSEQKKSVLISTDIMARG 524
L LL +E + R Q+F +++ +L++T++ RG
Sbjct: 302 LAQLL--------VEQNFPAIAIHRGMAQEERLSR--YQQFKDFQRR--ILVATNLFGRG 349
Query: 525 IDINEITHVINYDLPISSQQYVHRCGRTARANTEGIAINLLVGKGEQKFWSQHID----- 579
+DI + V NYD+P S Y+HR R R T+G+AI + + + K + D
Sbjct: 350 MDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVN 409
Query: 580 -TDLSRDIDGYQPSAYLDEEK 599
+L +ID S Y+++ +
Sbjct: 410 VAELPEEID---ISTYIEQSR 427
>CE27553 [A] KOG0337 ATP-dependent RNA helicase
Length = 853
Score = 113 bits (283), Expect = 8e-25
Identities = 91/349 (26%), Positives = 161/349 (46%), Gaps = 27/349 (7%)
Query: 230 DILVNASTGSGKTLAYSVPLVQILRSRTVNKVRAIILVPTKILIHQVYDCLSKLSQGTSL 289
D++ + TGSGKT A+ +P++Q L+ R +RA+++ PT+ L Q + + +L + T L
Sbjct: 63 DVVAMSRTGSGKTAAFVIPMLQKLKRRDTTGIRALMVSPTRELALQTFKVVKELGRFTGL 122
Query: 290 NVSMSKLENSLKEEHNKFLYNSPDILIITPGRLVDHLQMESFDLKTLKFLVLDEADRLLN 349
+ + ++E+ + ++ +PDIL+ TPGRL+ + L ++++V DEADRL
Sbjct: 123 RCACLVGGDQIEEQFST-IHENPDILLATPGRLLHVIVEMDLRLSYVQYVVFDEADRLFE 181
Query: 350 QSFQNWNQVLFHHLTNDKQDKRPGNVIKMVFSATLTTNAEKLYNLYLHNPKIFLTDSVKL 409
FQ+ + +Q ++FSATL L +P + D +
Sbjct: 182 MGFQDQLTETLKRIPESRQ--------TLLFSATLPKMLVDFAKAGLTDPMLVRLDVDE- 232
Query: 410 YSIPKKLQELNVNIPTAKSLFKPLLLLR-------IIHDIKSSASRNAKILVFVK----- 457
+ KL + + LF L L R + +K K+ + K
Sbjct: 233 -KVSDKLSMVFCMCRPDEKLFALLHLCRNFCFKKLLETSLKKCKISKKKVPLLKKVRMDR 291
Query: 458 -SNEASIRLESLLHAMLGSGIIEDEYNMFLXXXXXXXXXXXXRKLIQEFASSEQKKSVLI 516
+ + + ++ H GI+ + + IQ+F E++ ++L+
Sbjct: 292 ENKQTVVFCATMKHVEYVVGILH-RAGIDCSFVYSQLDATARKMNIQKF--HEKQNNILV 348
Query: 517 STDIMARGIDINEITHVINYDLPISSQQYVHRCGRTARANTEGIAINLL 565
TD+ ARG+DI + VIN P ++ +VHR GR ARA G AI+L+
Sbjct: 349 VTDVAARGVDIPLLDTVINLHFPPKAKLFVHRVGRVARAGRSGTAISLI 397
>CE17559 [A] KOG0339 ATP-dependent RNA helicase
Length = 811
Score = 113 bits (283), Expect = 8e-25
Identities = 95/351 (27%), Positives = 165/351 (46%), Gaps = 49/351 (13%)
Query: 230 DILVNASTGSGKTLAYSVPLVQILRSRTVNKVR----AIILVPTKILIHQVYDCLSKLSQ 285
D+L A TGSGKT AY P + + + K A+I+VPT+ L QV+ K +
Sbjct: 304 DVLGIAKTGSGKTAAYLWPAIVHIMDQPDLKAGEGPVAVIVVPTRELAIQVFQEAKKFCK 363
Query: 286 GTSLNVSMSKLENSLKEEHNKFLYNSPDILIITPGRLVDHLQMESFDLKTLKFLVLDEAD 345
++N + S E+ N+ ++++ TPGR++D ++M + + FLV DEAD
Sbjct: 364 VYNINPICAYGGGSKWEQSNELQNEGAEMVVCTPGRIIDLVKMGATNFLRTTFLVFDEAD 423
Query: 346 RLLNQSFQNWNQVLFHHLTNDKQDKRPGNVIKMVFSATLTTNAEKLYNLYLHNPKIFLTD 405
R+ + F+ + + H+ D+Q ++FSAT E+L + L D
Sbjct: 424 RMFDMGFEAQVKSISDHVRPDRQC--------LMFSATFKQKVERL-------ARDALVD 468
Query: 406 SVKLYSIPKKLQELNVNIPTAKSLFK--PLLLLRIIHDIKSSASRNAKILVFVKSNEAS- 462
V++ + ++ E N +I + + + L +I ++ AS K+L+FV S
Sbjct: 469 PVRI--VQGEVGEANADIEQKVFVMQNQDVKLHWLIRNLVEFASLG-KVLIFVTKKLDSE 525
Query: 463 -----IRLESLLHAMLGSGIIEDEYNMFLXXXXXXXXXXXXRKLIQEFASSEQKKSVLIS 517
++++ +L +++ E N + +K +L++
Sbjct: 526 DVAKKLKMKDFDIVLLHGDMLQAERN-------------------ENLLKFRKKSQILVA 566
Query: 518 TDIMARGIDINEITHVINYDLPISSQQYVHRCGRTARANTEGIAINLLVGK 568
TD+ ARG+DI+EI VIN+D+ +VHR GRT RA +G A L+ K
Sbjct: 567 TDVAARGLDISEIRTVINFDMARDIDTHVHRIGRTGRAGHKGTAYTLVTEK 617
>At3g09720 [A] KOG0344 ATP-dependent RNA helicase
Length = 545
Score = 113 bits (283), Expect = 8e-25
Identities = 112/384 (29%), Positives = 179/384 (46%), Gaps = 57/384 (14%)
Query: 186 LLKNITSNFSSETFPIQTILFDKVLPLLNSSFKANRKLFTRRVGDILVNASTGSGKTLAY 245
+L+N+ E PIQ + +P+L S R+ F A TGSGKT A+
Sbjct: 152 ILRNLAELGFKEPTPIQR----QAIPILLSG----RECFAC--------APTGSGKTFAF 195
Query: 246 SVPLV---QILRSR-TVNKVRAIILVPTKILIHQVYDCLSKLSQGTSLNVSMSKLENSLK 301
P++ ++L R + + +RA+IL P + L Q KL +G++ ++ +
Sbjct: 196 ICPMLIKLKVLNCRPSTDGIRAVILSPARELAAQTAREGKKLIKGSNFHIRLMTKPLVKT 255
Query: 302 EEHNKFLYNSPDILIITPGRLVDHLQMESFDLKTLKFLVLDEADRLLNQSFQNWNQVLFH 361
+ +K D+LI TP RL ++ + DL +++LVLDE+D+L QS +
Sbjct: 256 ADFSKLWC---DVLISTPMRLKRAIKAKKIDLSKVEYLVLDESDKLFEQSLLKQIDCVVK 312
Query: 362 HLTNDKQDKRPGNVIKMVFSATLTTNAEKLYNLYLHNPKIFLTDSVKLYSIPKKLQELNV 421
+N ++I+ +FSATL + E+L +H D+V++ K V
Sbjct: 313 ACSNP-------SIIRSLFSATLPDSVEELARSIMH-------DAVRVIIGRKNTASETV 358
Query: 422 N--IPTAKSLFKPLLLLRIIHDIKSSASRNAKILVFVKSNEASIRL-ESLLHAMLGSGII 478
+ A S LL LR + S N +L+FV+S E + L + L + +G+I
Sbjct: 359 KQKLVFAGSEEGKLLALRQ----SFAESLNPPVLIFVQSKERAKELYDELKCENIRAGVI 414
Query: 479 EDEYNMFLXXXXXXXXXXXXRKLIQEFASSEQKKSVLISTDIMARGIDINEITHVINYDL 538
+ + +F + E K VLI+TD++ARG+D I VINYD
Sbjct: 415 HSDLPP-----------GERENAVDQFRAGE--KWVLIATDVIARGMDFKGINCVINYDF 461
Query: 539 PISSQQYVHRCGRTARANTEGIAI 562
P S+ Y+HR GR+ RA G AI
Sbjct: 462 PDSASAYIHRIGRSGRAGRSGEAI 485
>7300808 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 663
Score = 113 bits (283), Expect = 8e-25
Identities = 126/499 (25%), Positives = 215/499 (42%), Gaps = 61/499 (12%)
Query: 75 SVAPTETSQQSVDAKHSSVLNRFQQTLSLQGALSASDKVSSDNDVHDEDVSMKDVHSLTP 134
S + ++ +Q +A S L+ + + D +++ +E V K L
Sbjct: 76 SDSESDDDEQEDEADEDSDLDEVAEVDEEDVDSGSEDDDQQEDEDEEEPVPAKKTKLL-- 133
Query: 135 IPQPAKVTN-EALKLLDPSTYKSTAWDAATKIHYDSKMVKQFDSYEGELDARLLKNITSN 193
P +K N + K +P T +S+ + Y + F S +G + L+ I
Sbjct: 134 -PNKSKAQNGKPAKDDEPFTVESSL----AALDYRDSDDRSFASLKGAVSEATLRAIKEM 188
Query: 194 FSSETFPIQTILFDKVLPLLNSSFKANRKLFTRRVGDILVNASTGSGKTLAYSVPLVQI- 252
+E IQ+ + PLL D++ A TGSGKTLA+ +P V++
Sbjct: 189 GFTEMTEIQS---KSLTPLLKGR-------------DLVGAAQTGSGKTLAFLIPAVELI 232
Query: 253 --LRSRTVNKVRAIILVPTKILIHQVYDCLSKLSQGTSLNVSMSKLENSLKEEHNKFLYN 310
LR N II+ PT+ L Q + L +L + + S ++ ++ L
Sbjct: 233 NKLRFMPRNGTGVIIISPTRELSMQTFGVLKELMAHHHHTYGL-VMGGSNRQVESEKLGK 291
Query: 311 SPDILIITPGRLVDHLQ-MESFDLKTLKFLVLDEADRLLNQSFQNWNQVLFHHLTNDKQD 369
+IL+ TPGRL+DHLQ F K L+ L++DE DR+L F+ + + + L +Q
Sbjct: 292 GINILVATPGRLLDHLQNSPDFLYKNLQCLIIDEVDRILEIGFEEELKQIINLLPKRRQ- 350
Query: 370 KRPGNVIKMVFSATLTTNAEKLYNLYLHNPKIF--LTDSVKLYSIPKKLQELNVNIPTAK 427
M+FSAT T E L L L + I+ + D+ ++ L++ + P+ K
Sbjct: 351 -------TMLFSATQTARIEALSKLALKSEPIYVGVHDNQDTATV-DGLEQGYIVCPSEK 402
Query: 428 SLFKPLLLLRIIHDIKSSASRNAKILVFVKSNEASIRLESLLHAMLGSGIIEDEYNMFLX 487
L L+ +R K++VF S+ S++ L + L
Sbjct: 403 RLLVLFTFLK--------KNRKKKVMVFF-SSCMSVKYHHELFNYID-----------LP 442
Query: 488 XXXXXXXXXXXRKLIQEFASSEQKKSVLISTDIMARGIDINEITHVINYDLPISSQQYVH 547
++ F + +L+ TD+ ARG+DI ++ ++ YD P ++Y+H
Sbjct: 443 VTSIHGKQKQTKRTTTFFQFCNAESGILLCTDVAARGLDIPQVDWIVQYDPPDDPREYIH 502
Query: 548 RCGRTAR-ANTEGIAINLL 565
R GRTAR + T G A+ L+
Sbjct: 503 RVGRTARGSGTSGHALLLM 521
>YDL084w [A] KOG0329 ATP-dependent RNA helicase
Length = 446
Score = 112 bits (280), Expect = 2e-24
Identities = 101/376 (26%), Positives = 172/376 (44%), Gaps = 40/376 (10%)
Query: 230 DILVNASTGSGKTLAYSVPLVQILRSRTVNKVRAIILVPTKILIHQV---YDCLSKLSQG 286
D+L A +G GKT + + +Q L +V +++ + L +Q+ Y SK
Sbjct: 101 DVLCQAKSGLGKTAVFVLSTLQQL-DPVPGEVAVVVICNARELAYQIRNEYLRFSKYMPD 159
Query: 287 TSLNVSMSKLENSLKEEHNKFLYNSPDILIITPGRLVDHLQMESFDLKTLKFLVLDEADR 346
V S E K +P I++ TPGRL ++ + DL +K V+DE D+
Sbjct: 160 VKTAVFYGGTPISKDAELLKNKDTAPHIVVATPGRLKALVREKYIDLSHVKNFVIDECDK 219
Query: 347 LLNQ-SFQNWNQVLFHHLTNDKQDKRPGNVIKMVFSATLTTNAEKLYNLYLHNP-KIFLT 404
+L + + Q +F DKQ M+FSATL+ + +L NP +IF+
Sbjct: 220 VLEELDMRRDVQEIFRATPRDKQ--------VMMFSATLSQEIRPICRRFLQNPLEIFVD 271
Query: 405 DSVKLYSIPKKLQELNVNIPTAKSLFKPLLLLRIIHDIKSSASRNAKILVFVKSNEASIR 464
D KL LQ+ + + + K L +++ D++ + ++++FVKS +
Sbjct: 272 DEAKLTL--HGLQQYYIKLEEREKNRK---LAQLLDDLEFN-----QVIIFVKSTTRANE 321
Query: 465 LESLLHAMLGSGIIEDEYNMFLXXXXXXXXXXXXRKLIQEFASSEQKKSVLISTDIMARG 524
L LL+A I + ++ + A + +K + +STD+ RG
Sbjct: 322 LTKLLNASNFPAITVHGH------------MKQEERIARYKAFKDFEKRICVSTDVFGRG 369
Query: 525 IDINEITHVINYDLPISSQQYVHRCGRTARANTEGIAINLLVGKGEQKFWS---QHIDTD 581
IDI I INYDL + QY+HR GR R T+G+AI+ + K +++ + + D
Sbjct: 370 IDIERINLAINYDLTNEADQYLHRVGRAGRFGTKGLAISFVSSKEDEEVLAKIQERFDVK 429
Query: 582 LSR-DIDGYQPSAYLD 596
++ +G PS YL+
Sbjct: 430 IAEFPEEGIDPSTYLN 445
>Hs4758112 [A] KOG0329 ATP-dependent RNA helicase
Length = 428
Score = 112 bits (280), Expect = 2e-24
Identities = 97/378 (25%), Positives = 175/378 (45%), Gaps = 41/378 (10%)
Query: 230 DILVNASTGSGKTLAYSVPLVQILRSRTVNKVRAIILVPTKILIHQV---YDCLSKLSQG 286
D+L A +G GKT + + +Q L T +V +++ T+ L Q+ Y+ SK
Sbjct: 84 DVLCQAKSGMGKTAVFVLATLQQLEPVT-GQVSVLVMCHTRELAFQISKEYERFSKYMPN 142
Query: 287 TSLNVSMSKLENSLKEEHNKFLYNSPDILIITPGRLVDHLQMESFDLKTLKFLVLDEADR 346
+ V L S+K++ N P I++ TPGR++ + +S +LK +K +LDE D+
Sbjct: 143 VKVAVFFGGL--SIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDK 200
Query: 347 LLNQ-SFQNWNQVLFHHLTNDKQDKRPGNVIKMVFSATLTTNAEKLYNLYLHNP-KIFLT 404
+L Q + Q +F ++KQ M+FSATL+ + ++ +P +IF+
Sbjct: 201 MLEQLDMRRDVQEIFRMTPHEKQ--------VMMFSATLSKEIRPVCRKFMQDPMEIFVD 252
Query: 405 DSVKLYSIPKKLQELNVNIPTAKSLFKPLLLLRIIHDIKSSASRNAKILVFVKSNEASIR 464
D KL LQ+ V + + K LL ++ ++++FVKS + I
Sbjct: 253 DETKLTL--HGLQQYYVKLKDNEKNRKLFDLLDVLEF--------NQVVIFVKSVQRCIA 302
Query: 465 LESLLHAMLGSGIIEDEYNMFLXXXXXXXXXXXXRKLIQEFASSEQKKSVLISTDIMARG 524
L LL +E + R Q+F +++ +L++T++ RG
Sbjct: 303 LAQLL--------VEQNFPAIAIHRGMPQEERLSR--YQQFKDFQRR--ILVATNLFGRG 350
Query: 525 IDINEITHVINYDLPISSQQYVHRCGRTARANTEGIAINLLVGKGEQKFWS---QHIDTD 581
+DI + NYD+P S Y+HR R R T+G+AI + + + K + + +
Sbjct: 351 MDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVN 410
Query: 582 LSRDIDGYQPSAYLDEEK 599
+S D S+Y+++ +
Sbjct: 411 ISELPDEIDISSYIEQTR 428
>7293060 [A] KOG0334 RNA helicase
Length = 1224
Score = 112 bits (280), Expect = 2e-24
Identities = 98/344 (28%), Positives = 160/344 (46%), Gaps = 39/344 (11%)
Query: 230 DILVNASTGSGKTLAYSVPLVQILRSRTVNK----VRAIILVPTKILIHQVYDCLSKLSQ 285
D++ A TGSGKTLA+ +P+ + + + + AII+ PT+ L Q+ + K S+
Sbjct: 549 DLIGIAKTGSGKTLAFILPMFRHILDQPSMEDGDGAIAIIMAPTRELCMQIGKDIRKFSK 608
Query: 286 GTSLNVSMSKLENSLKEEHNKFLYNSPDILIITPGRLVDHLQMES---FDLKTLKFLVLD 342
L + E+ + L +I++ TPGR++D L S +L+ + ++VLD
Sbjct: 609 SLGLRPVCVYGGTGISEQIAE-LKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLD 667
Query: 343 EADRLLNQSFQNWNQVLFHHLTNDKQDKRPGNVIKMVFSATLTTNAEKLYNLYLHNPKIF 402
EADR+ + F+ + ++ D+Q ++FSAT E L L P
Sbjct: 668 EADRMFDMGFEPQVMRIIDNVRPDRQT--------VMFSATFPRQMEALARRILKKPIEV 719
Query: 403 LTDSVKLYSIPKKLQELNVNIPTAKSLFKPLLLLRIIHDIKSSASRNAKILVFV-KSNEA 461
+ + + K++++ V + FK L LL I + S I+VFV K A
Sbjct: 720 IVGGRSV--VCKEVEQHVVILNDDAKFFKLLELLGIYQEAGS-------IIVFVDKQENA 770
Query: 462 SIRLESLLHAMLGSGIIEDEYNMFLXXXXXXXXXXXXRKLIQEFASSEQKKSVLISTDIM 521
I L L+ A + + F I +F S K +LI+T +
Sbjct: 771 DILLRDLMKASYPCMSLHGGIDQF-----------DRDSTIIDFKSG--KVRLLIATSVA 817
Query: 522 ARGIDINEITHVINYDLPISSQQYVHRCGRTARANTEGIAINLL 565
ARG+D+ ++ V+NYD+P + YVHRCGRT RA +G A +
Sbjct: 818 ARGLDVKDLILVVNYDVPNHYEDYVHRCGRTGRAGKKGSAYTFI 861
>YNL112w [A] KOG0331 ATP-dependent RNA helicase
Length = 546
Score = 112 bits (279), Expect = 2e-24
Identities = 90/345 (26%), Positives = 161/345 (46%), Gaps = 45/345 (13%)
Query: 230 DILVNASTGSGKTLAYSVPLVQILRSRTV----NKVRAIILVPTKILIHQVYDCLSKLSQ 285
D++ A+TGSGKTL+Y +P + + ++ + + ++L PT+ L Q+ SK
Sbjct: 152 DMVGIAATGSGKTLSYCLPGIVHINAQPLLAPGDGPIVLVLAPTRELAVQIQTECSKFGH 211
Query: 286 GTSLNVSMSKLENSLKEEHNKFLYNSPDILIITPGRLVDHLQMESFDLKTLKFLVLDEAD 345
+ + + K + + L +I+I TPGRL+D L++ +LK + +LVLDEAD
Sbjct: 212 SSRIR-NTCVYGGVPKSQQIRDLSRGSEIVIATPGRLIDMLEIGKTNLKRVTYLVLDEAD 270
Query: 346 RLLNQSFQNWNQVLFHHLTNDKQDKRPGNVIKMVFSATLTTNAEKLYNLYLHNPKIFLTD 405
R+L+ F+ + + + D+Q +++SAT ++L YL++P
Sbjct: 271 RMLDMGFEPQIRKIVDQIRPDRQ--------TLMWSATWPKEVKQLAADYLNDPIQVQVG 322
Query: 406 SVKLYSIPKKLQELNVNIPTAKSLFKPLLLLRIIHDIKSSASRNAKILVFVKSNEASIRL 465
S++L + Q ++ ++ D + N + + NE +
Sbjct: 323 SLELSASHNITQ-----------------IVEVVSDFEKRDRLNKYLETASQDNEYKTLI 365
Query: 466 ESLLHAMLGSGIIEDEYNMFLXXXXXXXXXXXXRK-------LIQEFASSEQKKSVLIST 518
+ M D+ +L K ++QEF + + ++++T
Sbjct: 366 FASTKRMC------DDITKYLREDGWPALAIHGDKDQRERDWVLQEFRNG--RSPIMVAT 417
Query: 519 DIMARGIDINEITHVINYDLPISSQQYVHRCGRTARANTEGIAIN 563
D+ ARGID+ I +VINYD+P + + YVHR GRT RA G AI+
Sbjct: 418 DVAARGIDVKGINYVINYDMPGNIEDYVHRIGRTGRAGATGTAIS 462
>SPAC1F7.02c [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 578
Score = 112 bits (279), Expect = 2e-24
Identities = 96/341 (28%), Positives = 169/341 (49%), Gaps = 34/341 (9%)
Query: 230 DILVNASTGSGKTLAYSVPLVQIL---RSRTVNKVRAIILVPTKILIHQVYDCLSKLSQG 286
D+L A TGSGKTLA+ +P +++L + + N II+ PT+ L Q++ +L +
Sbjct: 128 DVLGAAKTGSGKTLAFLIPTIEMLYALKFKPRNGTGVIIISPTRELALQIFGVAKELLKY 187
Query: 287 TSLNVSMSKLENSLKEEHNKFLYNSPDILIITPGRLVDHLQ-MESFDLKTLKFLVLDEAD 345
+ + + E +K L ++L+ TPGRL+DHLQ + F + L+ LV+DEAD
Sbjct: 188 HHQTFGIVIGGANRRAEADK-LVKGVNLLVATPGRLLDHLQNTKGFVFRNLRSLVIDEAD 246
Query: 346 RLLNQSFQNWNQVLFHHLTNDKQDKRPGNVIKMVFSATLTTNAEKLYNLYLHNPKIFLT- 404
R+L F++ + + L ++ + ++FSAT TT E L + L +++
Sbjct: 247 RILEIGFEDEMRQIMKILPSENRQT-------LLFSATQTTKVEDLARISLKPGPLYVNV 299
Query: 405 DSVKLYSIPKKLQELNVNIPTAKSLFKPLLLLRIIHDIKSSASRNAKILVFVKSNEASIR 464
DS K S + L++ V + + K LL + ++K K++VF+ S +
Sbjct: 300 DSGKPTSTVEGLEQGYVVVDSDKRFL--LLFSFLKRNLKK------KVIVFMSSCASVKY 351
Query: 465 LESLLHAMLGSGIIEDEYNMFLXXXXXXXXXXXXRKLIQEFASSEQKKSVLISTDIMARG 524
+ LL+ + ++ + EF ++E K +L+ T++ ARG
Sbjct: 352 MAELLNYI----------DLPVLDLHGKQKQQRRTNTFFEFCNAE--KGILLCTNVAARG 399
Query: 525 IDINEITHVINYDLPISSQQYVHRCGRTARANTEGIAINLL 565
+DI + ++ YD P + Y+HR GRTAR T+G +L+
Sbjct: 400 LDIPAVDWIVQYDPPDDPRDYIHRVGRTAR-GTKGTGKSLM 439
>At5g54910 [A] KOG0343 RNA Helicase
Length = 739
Score = 112 bits (279), Expect = 2e-24
Identities = 93/347 (26%), Positives = 162/347 (45%), Gaps = 33/347 (9%)
Query: 230 DILVNASTGSGKTLAYSVPLVQIL---RSRTVNKVRAIILVPTKILIHQVYDCLSKLSQG 286
DIL A TGSGKTLA+ +P+++ L R + V II+ PT+ L Q + L+K+ +
Sbjct: 110 DILGAARTGSGKTLAFVIPILEKLHRERWSPEDGVGCIIISPTRELAAQTFGVLNKVGKF 169
Query: 287 TSLNVSMSKLENSLKEEHNKFLYNSPDILIITPGRLVDHL-QMESFDLKTLKFLVLDEAD 345
+ + + + K + +IL+ PGRL+ H+ + +F+ L+ L+LDEAD
Sbjct: 170 HKFSAGLL-IGGREGVDVEKERVHEMNILVCAPGRLLQHMDETPNFECPQLQILILDEAD 228
Query: 346 RLLNQSFQNWNQVLFHHLTNDKQDKRPGNVIKMVFSATLTTNAEKLYNLYLHNPKIFLTD 405
R+L+ +F+ + L +Q ++FSAT T + L L L +P+
Sbjct: 229 RVLDSAFKGQLDPIISQLPKHRQT--------LLFSATQTKKVKDLARLSLRDPEYISVH 280
Query: 406 SVKLYSIPKKLQELNVNIPTAKSLFKPLLLLRIIHDIKSSASRNAKILVFVKSNEASIRL 465
+ + + P L + + +P K L ++ N++ILVF+ S + ++
Sbjct: 281 AEAVTATPTSLMQTVMIVPVEKKLDMLWSFIK--------THLNSRILVFL-STKKQVKF 331
Query: 466 ESLLHAMLGSGIIEDEYNMFLXXXXXXXXXXXXRKLIQEFASSEQKKSVLISTDIMARGI 525
L GI K + ++ +++SVL TD++ARG+
Sbjct: 332 VHEAFNKLRPGI----------PLKSLHGKMSQEKRMGVYSQFIERQSVLFCTDVLARGL 381
Query: 526 DINE-ITHVINYDLPISSQQYVHRCGRTARANTEGIAINLLVGKGEQ 571
D ++ + V+ D P Y+HR GRTAR T+G ++ L E+
Sbjct: 382 DFDKAVDWVVQVDCPEDVASYIHRVGRTARFYTQGKSLLFLTPSEEK 428
>At3g16840 [A] KOG0347 RNA helicase
Length = 833
Score = 112 bits (279), Expect = 2e-24
Identities = 106/391 (27%), Positives = 177/391 (45%), Gaps = 49/391 (12%)
Query: 230 DILVNASTGSGKTLAYSVPLVQ-------------ILRSRTVNK------VRAIILVPTK 270
D++ A TGSGKTLA+ +P++Q L+ K +RA+I+ PT+
Sbjct: 231 DVIGAAETGSGKTLAFGLPILQRLLDEREKVGKLYALKGEEAQKYAADGYLRALIITPTR 290
Query: 271 ILIHQVYDCLSKLSQGTSLNVSMSKLENSLKEEHNKFLYNSPDILIITPGRLVDHL---Q 327
L QV + L ++ S+ V + + E+ + L P+I++ TPGRL + + +
Sbjct: 291 ELALQVTEHLENAAKNLSVKV-VPIVGGMFSEKQERRLKEKPEIVVATPGRLWELMSAGE 349
Query: 328 MESFDLKTLKFLVLDEADRLLNQS-FQNWNQVLFHHLTNDKQDKRPGNVIK--------- 377
+L +L F VLDEADR++ + F+ +L DK ++ +K
Sbjct: 350 KHLVELHSLSFFVLDEADRMVERGHFRELQSILDLLPVTDKPNEGKTQTVKSNDTVLNVP 409
Query: 378 ------MVFSATLTTNAEKLYNLYLHNPKIFLTDSVKLYSIPKKLQELNV--NIPTAKSL 429
VFSAT+ +++ L + K + S ++ SI + + N+
Sbjct: 410 KKKRQTFVFSATIALSSDFRKKLKRGSSKSKQSSSGEVNSIEVLSERAGMRDNVAIIDLT 469
Query: 430 FKPLLLLRIIHD-IKSSASRNAKILVFVKSNEASIRL----ESLLHAMLGSGIIEDEYNM 484
+L +I IK L ++ S R S+ SG+++ +
Sbjct: 470 TTSILAPKIEESFIKCEEKEKDAYLYYILSVHGQGRTIVFCTSVTDLRHISGLLKI-LGL 528
Query: 485 FLXXXXXXXXXXXXRKLIQEFASSEQKKSVLISTDIMARGIDINEITHVINYDLPISSQQ 544
+ K I F +SE +LI+TD++ARGIDI + +I+Y LP S++
Sbjct: 529 DVCTLFSEMKQRARLKSIDRFRASEN--GILIATDLVARGIDIKNVRTIIHYKLPHSAEV 586
Query: 545 YVHRCGRTARANTEGIAINLLVGKGEQKFWS 575
YVHRCGRTARA +G +I L+ KF++
Sbjct: 587 YVHRCGRTARAFADGCSIALIEPNETSKFYT 617
>7296990 [A] KOG0329 ATP-dependent RNA helicase
Length = 424
Score = 112 bits (279), Expect = 2e-24
Identities = 94/375 (25%), Positives = 171/375 (45%), Gaps = 40/375 (10%)
Query: 230 DILVNASTGSGKTLAYSVPLVQILRSRTVNKVRAIILVPTKILIHQV---YDCLSKLSQG 286
DIL A +G GKT + + +Q L N +++ T+ L Q+ Y+ SK
Sbjct: 80 DILCQAKSGMGKTAVFVLATLQQLEPSDNNTCHVLVMCHTRELAFQISKEYERFSKYMPT 139
Query: 287 TSLNVSMSKLENSLKEEHNKFLYNSPDILIITPGRLVDHLQMESFDLKTLKFLVLDEADR 346
+ V + +++++ +P I++ TPGR++ ++ + +LK LK VLDE D+
Sbjct: 140 VKVAVFFGGM--AIQKDEETLKSGTPHIVVGTPGRILALIRNKKLNLKLLKHFVLDECDK 197
Query: 347 LLNQ-SFQNWNQVLFHHLTNDKQDKRPGNVIKMVFSATLTTNAEKLYNLYLHNP-KIFLT 404
+L Q + Q +F + KQ M+FSATL+ + + ++ +P ++++
Sbjct: 198 MLEQLDMRRDVQEIFRSTPHGKQ--------VMMFSATLSKDIRPVCKKFMQDPMEVYVD 249
Query: 405 DSVKLYSIPKKLQELNVNIPTAKSLFKPLLLLRIIHDIKSSASRNAKILVFVKSNEASIR 464
D KL LQ+ VN+ + K LL ++ ++++FVKS + +
Sbjct: 250 DEAKLTL--HGLQQHYVNLKENEKNKKLFELLDVLEF--------NQVVIFVKSVQRCVA 299
Query: 465 LESLLHAMLGSGIIEDEYNMFLXXXXXXXXXXXXRKLIQEFASSEQKKSVLISTDIMARG 524
L LL E N Q+F + +K +L++T++ RG
Sbjct: 300 LSQLL----------TEQNFPAIGIHRGMTQEERLNRYQQF--KDFQKRILVATNLFGRG 347
Query: 525 IDINEITHVINYDLPISSQQYVHRCGRTARANTEGIAINLLVGKGEQKFWSQ---HIDTD 581
+DI + V NYD+P S Y+HR R R T+G+AI + + + K ++ D +
Sbjct: 348 MDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNEVQDRFDVN 407
Query: 582 LSRDIDGYQPSAYLD 596
+S + S Y++
Sbjct: 408 ISELPEEIDLSTYIE 422
>At1g31970 [A] KOG0331 ATP-dependent RNA helicase
Length = 537
Score = 111 bits (278), Expect = 3e-24
Identities = 98/342 (28%), Positives = 161/342 (46%), Gaps = 38/342 (11%)
Query: 230 DILVNASTGSGKTLAYSVP-LVQILR--------SRTVNKVRAIILVPTKILIHQVYDCL 280
D++ A TGSGKTLA+ +P ++ +L+ S+ VN ++L PT+ L Q+ D L
Sbjct: 153 DLIGIAKTGSGKTLAFGIPAIMHVLKKNKKIGGGSKKVNPT-CLVLSPTRELAVQISDVL 211
Query: 281 SKLSQGTSLNVSMSKLENSLKEEHNKFLYNSPDILIITPGRLVDHLQMESFDLKTLKFLV 340
+ + L S+ S K + + DI+I TPGRL D ++ L + F+V
Sbjct: 212 REAGEPCGLK-SICVYGGSSKGPQISAIRSGVDIVIGTPGRLRDLIESNVLRLSDVSFVV 270
Query: 341 LDEADRLLNQSFQNWNQVLFHHLTNDKQDKRPGNVIKMVFSATLTTNAEKLYNLYLH-NP 399
LDEADR+L+ F+ + + + +Q ++FSAT + KL ++ NP
Sbjct: 271 LDEADRMLDMGFEEPVRFILSNTNKVRQ--------MVMFSATWPLDVHKLAQEFMDPNP 322
Query: 400 KIFLTDSVKLYSIPKKLQELNVNIPTAKSLFKPLLLLRIIHDIKSSASRNAKILVFVKSN 459
+ SV L + +Q + V A+ + + LL H S+ ++LVF
Sbjct: 323 IKVIIGSVDLAANHDVMQIIEVLDERARDQ-RLIALLEKYH-----KSQKNRVLVFALYK 376
Query: 460 EASIRLESLLHAMLGSGIIEDEYNMFLXXXXXXXXXXXXRKLIQEFASSEQKKSVLISTD 519
+ RLE L + + L +E + +L++TD
Sbjct: 377 VEAERLERFLQQRGWKAV-------SIHGNKAQSERTRSLSLFKEGSC-----PLLVATD 424
Query: 520 IMARGIDINEITHVINYDLPISSQQYVHRCGRTARANTEGIA 561
+ ARG+DI ++ VINY P++++ YVHR GRT RA +G+A
Sbjct: 425 VAARGLDIPDVEVVINYTFPLTTEDYVHRIGRTGRAGKKGVA 466
>ECU10g1680 [A] KOG0343 RNA Helicase
Length = 452
Score = 111 bits (277), Expect = 4e-24
Identities = 93/355 (26%), Positives = 167/355 (46%), Gaps = 53/355 (14%)
Query: 230 DILVNASTGSGKTLAYSVPLVQILRS---RTVNKVRAIILVPTKILIHQVYDCLSKLSQG 286
DI+ ++ TG+GKTLA+ VP +Q L S + + +++ PT+ L Q++D LS++++
Sbjct: 43 DIIGSSQTGTGKTLAFLVPTLQRLVSLGWGGGDGLGCLVITPTRELALQIFDVLSRIAKY 102
Query: 287 TSLNVSMSKLENSLKEEHNKFLYNSPDILIITPGRLVDHLQMESF-DLKTLKFLVLDEAD 345
T L+ + + L+ E N +IL+ TPGRL+ HLQ + ++ L+LDEAD
Sbjct: 103 TVLSTGL--IMGGLEAEDELLKVNQMNILVCTPGRLLQHLQENPYLSTANVQILILDEAD 160
Query: 346 RLLNQSFQNWNQVLFHHLTNDKQDKRPGNVIKMVFSATLTTNAEKLYNLYLHNPKIFLTD 405
+++ F+ + + ++ KQ ++FSAT + ++ L L +P+I
Sbjct: 161 KMIEMGFKEVLEDILEYIPQKKQ--------TLLFSATPKASTARI--LKLEDPRII--S 208
Query: 406 SVKLYSIPKKLQELNVNIPTAKSLFKPLLLLRIIHDIKSSASRNAKILVFVKSNEAS--- 462
K P +L++ + T + +H S I+ F E
Sbjct: 209 IYKEEGFPSQLRQYFYMMRTGDK-------INYLHTFIGSNPEVKGIVFFSTCKEVKFHC 261
Query: 463 -----IRLESLLHAMLGSGIIEDEYNMFLXXXXXXXXXXXXRKLIQEFASSEQKKSVLIS 517
++L + + + G + ++F ++ ++E K +L
Sbjct: 262 LLFERLKLRNRIFCLSGGMSQKQRIDVF-------------KRFVKE------KNGILFC 302
Query: 518 TDIMARGIDINEITHVINYDLPISSQQYVHRCGRTARANTEGIAINLLVGKGEQK 572
TD+ +RG+D ++ VI YD P + + YVHR GRTAR + G + LV GE+K
Sbjct: 303 TDLGSRGLDFPKVDVVIQYDCPCNVETYVHRVGRTARNSERGESYVYLV-HGEEK 356
>CE23832 [A] KOG0341 DEAD-box protein abstrakt
Length = 630
Score = 111 bits (277), Expect = 4e-24
Identities = 93/359 (25%), Positives = 169/359 (46%), Gaps = 45/359 (12%)
Query: 230 DILVNASTGSGKTLAYSVPLVQILRSRTVNK--VRA-----IILVPTKILIHQVYDCLSK 282
D++ ASTGSGKT+ + +PLV + + +R+ +I+VP++ L Q++D + +
Sbjct: 229 DMIGIASTGSGKTMTFVLPLVMFCLEQEMKLPFMRSEGPFGLIIVPSRELARQIFDLIIE 288
Query: 283 LSQGTSLNVSMSKLENSLK------EEHNKFLYNSPDILIITPGRLVDHLQMESFDLKTL 336
+ + ++ L E K + + I++ TPGRL D L + +L+
Sbjct: 289 MFDALG-KAGLPEMRAGLCIGGVPIGEQAKDVRDGIHIVVATPGRLSDMLTKKIINLEVC 347
Query: 337 KFLVLDEADRLLNQSFQNWNQVLFHHLTNDKQDKRPGNVIKMVFSATLTTNAEKLYNLYL 396
++LVLDEADR+L+ F++ + +F+ +Q ++FSAT+ + L
Sbjct: 348 RYLVLDEADRMLDMGFEDEIKSIFYFFKAQRQT--------LLFSATMPRKIQFFAKSAL 399
Query: 397 HNPKIFLTDSVKLYSIPKKLQELNVNIPTAKSLFKPLLLLRIIHDIKSSASRNAKILVFV 456
P + S+ LQEL K L+R++ ++ ++ K+L+F
Sbjct: 400 VKPIVVNVGRAGAASL-NVLQELEFVRSENK-------LVRVLECLQKTSP---KVLIFA 448
Query: 457 KSNEASIRLESLLHAMLGSGIIEDEYNMFLXXXXXXXXXXXXRKLIQEFASSEQKKSVLI 516
E + ++++ +L G+ + I+ F +E K VL+
Sbjct: 449 ---EKKVDVDNIYEYLLVKGVE-------VASIHGGKDQSDRHAGIEAFRKNE--KDVLV 496
Query: 517 STDIMARGIDINEITHVINYDLPISSQQYVHRCGRTARANTEGIAINLLVGKGEQKFWS 575
+TD+ ++G+D I HVIN+D+P + YVHR GRT R+ +G+A + K E S
Sbjct: 497 ATDVASKGLDFQGIEHVINFDMPEDIENYVHRIGRTGRSGRKGLATTFINKKSEMSVLS 555
>At2g33730 [A] KOG0333 U5 snRNP-like RNA helicase subunit
Length = 733
Score = 111 bits (277), Expect = 4e-24
Identities = 91/361 (25%), Positives = 161/361 (44%), Gaps = 39/361 (10%)
Query: 230 DILVNASTGSGKTLAYSVPLVQIL-------RSRTVNKVRAIILVPTKILIHQVYDCLSK 282
D++ A TGSGKT A+ +P++ + A+++ PT+ L Q+ + K
Sbjct: 352 DVIGIAETGSGKTAAFVLPMLAYISRLPPMSEENETEGPYAVVMAPTRELAQQIEEETVK 411
Query: 283 LSQGTSLNVSMSKLENSLKEEHNKFLYNSPDILIITPGRLVDHLQMESFDLKTLKFLVLD 342
+ V+ S++E+ K +I+I TPGRL+D L+ L ++VLD
Sbjct: 412 FAHYLGFRVTSIVGGQSIEEQGLKITQGC-EIVIATPGRLIDCLERRYAVLNQCNYVVLD 470
Query: 343 EADRLLNQSFQNW---------NQVLFHHLTNDKQDKRPGNVIKMVFSATLTTNAEKLYN 393
EADR+++ F+ + L ++ D++ +FSAT+ E+L
Sbjct: 471 EADRMIDMGFEPQVAGVLDAMPSSNLKPENEEEELDEKKIYRTTYMFSATMPPGVERLAR 530
Query: 394 LYLHNPKIFLTDSVKLYSIPKKLQELNVNIPTAKSLFKPLLLLRIIHDIKSSASRNAKIL 453
YL NP + V + + K ++ ++ K K L +++ ++ + A +
Sbjct: 531 KYLRNPVV-----VTIGTAGKTTDLISQHVIMMKESEKFFRLQKLLDEL---GEKTAIVF 582
Query: 454 VFVKSNEASIRLESLLHAMLGSGIIEDEYNMFLXXXXXXXXXXXXRKLIQEFASSEQKKS 513
V K N SI + + Y + ++ I ++ +
Sbjct: 583 VNTKKNCDSI----------AKNLDKAGYRV----TTLHGGKSQEQREISLEGFRAKRYN 628
Query: 514 VLISTDIMARGIDINEITHVINYDLPISSQQYVHRCGRTARANTEGIAINLLVGKGEQKF 573
VL++TD++ RGIDI ++ HVINYD+P + Y HR GRT RA G+A + L + F
Sbjct: 629 VLVATDVVGRGIDIPDVAHVINYDMPKHIEMYTHRIGRTGRAGKSGVATSFLTLHDTEVF 688
Query: 574 W 574
+
Sbjct: 689 Y 689
>Hs7661920 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 involved in
rRNA maturation DEAD-box superfamily
Length = 411
Score = 110 bits (276), Expect = 5e-24
Identities = 97/375 (25%), Positives = 175/375 (45%), Gaps = 56/375 (14%)
Query: 230 DILVNASTGSGKTLAYSVPLVQILRSRTVNKVRAIILVPTKILIHQVYDCLSKLSQGTSL 289
D++ + +G+GKT +S+ ++Q L + V + +A+IL PT+ L Q+ L L ++
Sbjct: 77 DVIAQSQSGTGKTATFSISVLQCLDIQ-VRETQALILAPTRELAVQIQKGLLALGDYMNV 135
Query: 290 NVSMSKLENSLKEEHNKFLYNSPDILIITPGRLVDHLQMESFDLKTLKFLVLDEADRLLN 349
++ E+ K Y ++ TPGR+ D ++ S + +K LVLDEAD +LN
Sbjct: 136 QCHACIGGTNVGEDIRKLDYGQ-HVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLN 194
Query: 350 QSFQNWNQVLFHHLTNDKQDKRPGNVIKMVFSATLTTNAEKLYNLYLHNPKIFLT----- 404
+ F+ ++ +L P ++ SATL ++ N ++ +P L
Sbjct: 195 KGFKEQIYDVYRYL--------PPATQVVLISATLPHEILEMTNKFMTDPIRILVKRDEL 246
Query: 405 --DSVKLYSIPKKLQELNVNIPTAKSLFKPLLLLRIIHDIKSSASRNAKILVFVKSNEAS 462
+ +K + + + +E + T L+ L + + + I + R L K EA+
Sbjct: 247 TLEGIKQFFVAVEREEWKFD--TLCDLYDTLTITQAV--IFCNTKRKVDWLT-EKMREAN 301
Query: 463 IRLESLLHAMLGSGIIEDEYNMFLXXXXXXXXXXXXRKLIQEFASSEQKKSVLISTDIMA 522
+ S+ M +++EF S + VLISTD+ A
Sbjct: 302 FTVSSMHGDM---------------------PQKERESIMKEFRSGASR--VLISTDVWA 338
Query: 523 RGIDINEITHVINYDLPISSQQYVHRCGRTARANTEGIAINLLVGKGEQKFWSQHIDTDL 582
RG+D+ +++ +INYDLP + + Y+HR GR+ R +G+AIN + ++ D +
Sbjct: 339 RGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFV----------KNDDIRI 388
Query: 583 SRDIDGYQPSAYLDE 597
RDI+ Y S +DE
Sbjct: 389 LRDIEQYY-STQIDE 402
>CE22474 [A] KOG0336 ATP-dependent RNA helicase
Length = 504
Score = 110 bits (276), Expect = 5e-24
Identities = 114/441 (25%), Positives = 194/441 (43%), Gaps = 68/441 (15%)
Query: 172 VKQFDSYEGELDARLLKNITSNFSSETFPIQTILFDKVLPLLNSSFKANRKLFTRRVGDI 231
V F+ G +A ++ I N + PIQ+ ++ PLL S D
Sbjct: 82 VNSFEQAFGS-NASIMGEIRKNGFEKPSPIQSQMW----PLLLSG------------QDC 124
Query: 232 LVNASTGSGKTLAYSVP--------LVQILRSRTVNKVRAIILV--PTKILIHQVYDCLS 281
+ + TGSGKTLA+ +P L Q ++ K +LV PT+ L Q+ +
Sbjct: 125 IGVSQTGSGKTLAFLLPALLHIDAQLAQYEKNDEEQKPSPFVLVLSPTRELAQQIEGEVK 184
Query: 282 KLSQGTSLNVSMSKLENSLKEEHNKFLYNSPDILIITPGRLVDHLQMESFDLKTLKFLVL 341
K S +V + + E + +I+I TPGRL D L ++ ++VL
Sbjct: 185 KYSYNGYKSVCL--YGGGSRPEQVEACRGGVEIVIATPGRLTDLSNDGVISLASVTYVVL 242
Query: 342 DEADRLLNQSFQ-NWNQVLFHHLTNDKQDKRPGNVIKMVFSATLTTNAEKLYNLYLHNPK 400
DEADR+L+ F+ ++LF + RP ++ + SAT KL + Y
Sbjct: 243 DEADRMLDMGFEVAIRRILF--------EIRPDRLVALT-SATWPEGVRKLTDKYTKEAV 293
Query: 401 IFLTDSVKLYSIPKKLQELNVNIPTAKSLFKPLLLLRIIHDIKSSASRNAKILVFVKSNE 460
+ + S+ L S K + + +P + + I++ + ++ +N K+++FVKS
Sbjct: 294 MAVNGSLDLTSC-KSVTQFFEFVPHDSRFLR---VCEIVNFLTAAHGQNYKMIIFVKSKV 349
Query: 461 ASIRLES--LLHAMLGSGIIEDEYNMFLXXXXXXXXXXXXRKLIQEFASSEQKKSVLIST 518
+ L S + + G+ R++ S + + +L++T
Sbjct: 350 MADHLSSDFCMKGINSQGL-------------HGGRSQSDREMSLNMLRSGEVQ-ILVAT 395
Query: 519 DIMARGIDINEITHVINYDLPISSQQYVHRCGRTARANTEGIAINLLVGKGEQKF----- 573
D+ +RGID+ +ITHV+NYD P+ ++YVHR GRT RA +G A++ L F
Sbjct: 396 DLASRGIDVPDITHVLNYDFPMDIEEYVHRVGRTGRAGRKGEAMSFLWWNDRSNFEGLIQ 455
Query: 574 ----WSQHIDTDLSRDIDGYQ 590
Q + L RD + Y+
Sbjct: 456 ILEKSEQEVPDQLRRDAEKYR 476
>7297048 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 389
Score = 110 bits (276), Expect = 5e-24
Identities = 84/336 (25%), Positives = 165/336 (49%), Gaps = 31/336 (9%)
Query: 230 DILVNASTGSGKTLAYSVPLVQILRSRTVNKVRAIILVPTKILIHQVYDCLSKLSQGTSL 289
D++ A +G+GKT +S+ ++Q + + ++ + +A+IL PT+ L Q+ + L + +
Sbjct: 55 DVIAQAQSGTGKTATFSIAILQQIDT-SIRECQALILAPTRELATQIQRVVMALGEYMKV 113
Query: 290 NVSMSKLENSLKEEHNKFLYNSPDILIITPGRLVDHLQMESFDLKTLKFLVLDEADRLLN 349
+ S + + + E + L + +++ TPGR+ D + + + +K VLDEAD +L+
Sbjct: 114 H-SHACIGGTNVREDARILESGCHVVVGTPGRVYDMINRKVLRTQYIKLFVLDEADEMLS 172
Query: 350 QSFQNWNQVLFHHLTNDKQDKRPGNVIKMVFSATLTTNAEKLYNLYLHNPKIFLTDSVKL 409
+ F++ Q +F L P +V ++ SAT+ + ++ ++ +P L +L
Sbjct: 173 RGFKDQIQDVFKML--------PPDVQVILLSATMPPDVLEVSRCFMRDPVSILVKKEEL 224
Query: 410 YSIPKKLQELNVNIPTAKSLFKPLLLLRIIHDIKSSASRNAKILVFVKSNEASIRLESLL 469
K +NV K L + D+ + S + +F + +++ L
Sbjct: 225 TLEGIKQFYVNVKQENWK--------LGTLCDLYDTLSITQSV-IFCNTRR---KVDQLT 272
Query: 470 HAMLGSGIIEDEYNMFLXXXXXXXXXXXXRKLIQEFASSEQKKSVLISTDIMARGIDINE 529
M +N + ++++F S + VLI+TD++ARGID+ +
Sbjct: 273 QEM-------SIHNFTVSAMHGDMEQRDREVIMKQFRSGSSR--VLITTDLLARGIDVQQ 323
Query: 530 ITHVINYDLPISSQQYVHRCGRTARANTEGIAINLL 565
++ VINYDLP + + Y+HR GR R +G+AIN +
Sbjct: 324 VSLVINYDLPSNRENYIHRIGRGGRFGRKGVAINFI 359
>Hs5453840_1 [A] KOG0331 ATP-dependent RNA helicase
Length = 469
Score = 110 bits (276), Expect = 5e-24
Identities = 96/337 (28%), Positives = 160/337 (46%), Gaps = 33/337 (9%)
Query: 230 DILVNASTGSGKTLAYSVPLVQILRSRTV----NKVRAIILVPTKILIHQVYDCLSKLSQ 285
D++ A TGSGKTLAY +P + + + + ++L PT+ L QV +
Sbjct: 131 DMVGIAQTGSGKTLAYLLPAIVHINHQPYLERGDGPICLVLAPTRELAQQVQQVADDYGK 190
Query: 286 GTSLNVSMSKLENSLKEEHNKFLYNSPDILIITPGRLVDHLQMESFDLKTLKFLVLDEAD 345
+ L S + K + L +I I TPGRL+D L+ +L+ +LVLDEAD
Sbjct: 191 CSRLK-STCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLESGKTNLRRCTYLVLDEAD 249
Query: 346 RLLNQSFQNWNQVLFHHLTNDKQDKRPGNVIKMVFSATLTTNAEKLYNLYLHNPKIFLTD 405
R+L+ F+ + + + D+Q +++SAT +L +L +
Sbjct: 250 RMLDMGFEPQIRKIVDQIRPDRQ--------TLMWSATWPKEVRQLAEDFLRDYTQINVG 301
Query: 406 SVKLYSIPKKLQELNVNIPTAKSLFKPLLLLRIIHDIKSSASRNAKILVFVKSNEASIRL 465
+++L + LQ ++V + + K L++++ +I A + K ++FV E R
Sbjct: 302 NLELSANHNILQIVDVCMESEKD----HKLIQLMEEI--MAEKENKTIIFV---ETKRRC 352
Query: 466 ESLLHAMLGSGIIEDEYNMFLXXXXXXXXXXXXRK-LIQEFASSEQKKSVLISTDIMARG 524
+ L M G + R ++ EF S K +LI+TD+ +RG
Sbjct: 353 DDLTRRMRRDG--------WPAMCIHGDKSQPERDWVLNEFRSG--KAPILIATDVASRG 402
Query: 525 IDINEITHVINYDLPISSQQYVHRCGRTARANTEGIA 561
+D+ ++ VINYD P SS+ YVHR GRTAR+ +G A
Sbjct: 403 LDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTA 439
>SPBC543.06c [A] KOG0340 ATP-dependent RNA helicase
Length = 453
Score = 110 bits (275), Expect = 6e-24
Identities = 107/381 (28%), Positives = 184/381 (48%), Gaps = 55/381 (14%)
Query: 235 ASTGSGKTLAYSVPLVQILRSRTVNKVRAIILVPTKILIHQVYDCLSKLSQGTSLNVSMS 294
A TGSGKT A+++P+++ S+ + + A+IL PT+ L Q+ + + L G +LN+ +
Sbjct: 51 AKTGSGKTAAFALPIIEKW-SKDPSGIFALILTPTRELAIQIDEQFAAL--GANLNLKHA 107
Query: 295 KLENSLKEEHNKF-LYNSPDILIITPGRLVDHLQMESFD----LKTLKFLVLDEADRLLN 349
+ + L P +++ TPGRL D ++ + L+ +KFLV+DEADRLL+
Sbjct: 108 LIVGGMDMIRQSIDLSKRPHVVVATPGRLADLIRSNGEETIAGLRRIKFLVMDEADRLLS 167
Query: 350 QSFQNWNQVLFHHL--TNDKQDKRPGNVIKMVFSATLTTNAEKL-YNLYLHN-PKIFL-- 403
+F + F L + D+Q ++F+AT+T +L Y +N P ++L
Sbjct: 168 PTFADDLDDCFSVLPASEDRQT--------LLFTATVTDAIRQLKYQPQKNNKPPLWLYE 219
Query: 404 --TDSVKLYSIPKKLQELNVNIPTAKSLFKPLLLLRIIHDIKSSASRNAKILVFVKSNEA 461
TD++ S+P LQ+ + + + + LL I + K SA ++FV
Sbjct: 220 VETDNI---SVPSTLQQSYIFVSSQVREAYLVHLLTIPENAKKSA------IIFVNRTRT 270
Query: 462 SIRLESLLHAMLGSGIIEDEYNMFLXXXXXXXXXXXXRKLIQEFASSEQKKSVLISTDIM 521
+ + S+L +L + E M + F + K +L++TD+
Sbjct: 271 AELIYSILR-LLELRVTELHSEMVQRERINS---------LGRFRAEAAK--ILVATDVA 318
Query: 522 ARGIDINEITHVINYDLPISSQQYVHRCGRTARANTEGIAINLLVGKGEQKFWSQHIDTD 581
+RG+DI + VIN+DLP Y+HR GRTARA G +I+++ + D D
Sbjct: 319 SRGLDIPSVQLVINFDLPRDPDDYIHRVGRTARAGRSGESISIVTER----------DVD 368
Query: 582 LSRDIDGYQPSAYLDEEKLSE 602
L I+ + + E +SE
Sbjct: 369 LVHAIEDRVGTKLSEYEHVSE 389
>At1g72730 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 414
Score = 110 bits (275), Expect = 6e-24
Identities = 88/347 (25%), Positives = 166/347 (47%), Gaps = 41/347 (11%)
Query: 230 DILVNASTGSGKTLAYSVPLVQILRSRTVNKVRAIILVPTKILIHQVYDCLSKLSQGTSL 289
D++ A +G+GKT + ++Q L V + +A++L PT+ L Q+ + L +
Sbjct: 80 DVIQQAQSGTGKTATFCSGVLQQLDISLV-QCQALVLAPTRELAQQIEKVMRALGDYLGV 138
Query: 290 NVSMSKLENSLKEEHNKFLYNSPDILIITPGRLVDHLQMESFDLKTLKFLVLDEADRLLN 349
S++E+ + L + +++ TPGR+ D L+ +S +K VLDEAD +L+
Sbjct: 139 KAQACVGGTSVREDQ-RVLQSGVHVVVGTPGRVFDLLRRQSLRADAIKMFVLDEADEMLS 197
Query: 350 QSFQNWNQVLFHHLTNDKQDKRPGNVIKMVFSATLTTNAEKLYNLYLHNPKIFLTDSVKL 409
+ F++ +F L P V VFSAT+ A ++ +++ P L +L
Sbjct: 198 RGFKDQIYDIFQLL--------PSKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDEL 249
Query: 410 YSIPKKLQELNVN-----IPTAKSLFKPLLLLRIIHDIKSSASRNAKILVFVKSNEASIR 464
K +NV+ + T L++ L + + + + + K + + +
Sbjct: 250 TLEGIKQFYVNVDKEEWKLETLCDLYETLAITQSVIFVNTRR----------KVDWLTDK 299
Query: 465 LESLLHAMLGSGIIEDEYNMFLXXXXXXXXXXXXRKLIQEFASSEQKKSVLISTDIMARG 524
+ S H + + D+ + +++EF S + VLI+TD++ARG
Sbjct: 300 MRSRDHTVSATHGDMDQNTRDI--------------IMREFRSGSSR--VLITTDLLARG 343
Query: 525 IDINEITHVINYDLPISSQQYVHRCGRTARANTEGIAINLLVGKGEQ 571
ID+ +++ VIN+DLP + Y+HR GR+ R +G+AIN + + E+
Sbjct: 344 IDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFMTSEDER 390
>YOR204w [A] KOG0335 ATP-dependent RNA helicase
Length = 604
Score = 110 bits (274), Expect = 8e-24
Identities = 97/352 (27%), Positives = 155/352 (43%), Gaps = 53/352 (15%)
Query: 230 DILVNASTGSGKTLAYSVPLV------------QILRSRTVNKV--RAIILVPTKILIHQ 275
D++ A TGSGKT + P++ + S K A+I+ PT+ L Q
Sbjct: 181 DLMACAQTGSGKTGGFLFPVLSESFKTGPSPQPESQGSFYQRKAYPTAVIMAPTRELATQ 240
Query: 276 VYDCLSKLSQGTSLNVSM----SKLENSLKEEHNKFLYNSPDILIITPGRLVDHLQMESF 331
++D K + + + + S + N L+E + D+L+ TPGRL D L+
Sbjct: 241 IFDEAKKFTYRSWVKACVVYGGSPIGNQLRE-----IERGCDLLVATPGRLNDLLERGKI 295
Query: 332 DLKTLKFLVLDEADRLLNQSFQNWNQVLFHHLTNDKQDKRPGNVIKMVFSATLTTNAEKL 391
L +K+LVLDEADR+L+ F + H+ D G ++FSAT + +
Sbjct: 296 SLANVKYLVLDEADRMLDMGF----EPQIRHIVEDCDMTPVGERQTLMFSATFPADIQ-- 349
Query: 392 YNLYLHNPKIFLTDSVKLY--SIPKKLQELNVNIPTAKSLFKPLLLLRIIHDIKSSASRN 449
H + FL+D + L + + + + ++ K LL ++ SAS +
Sbjct: 350 -----HLARDFLSDYIFLSVGRVGSTSENITQKVLYVENQDKKSALLDLL-----SASTD 399
Query: 450 AKILVFVKSNEASIRLESLLHAMLGSGIIEDEYNMFLXXXXXXXXXXXXRKLIQEFASSE 509
L+FV++ + +L L N + + F S
Sbjct: 400 GLTLIFVETKRMADQLTDFLIMQ----------NFRATAIHGDRTQSERERALAAFRSG- 448
Query: 510 QKKSVLISTDIMARGIDINEITHVINYDLPISSQQYVHRCGRTARANTEGIA 561
++L++T + ARG+DI +THVINYDLP YVHR GRT RA G+A
Sbjct: 449 -AATLLVATAVAARGLDIPNVTHVINYDLPSDVDDYVHRIGRTGRAGNTGLA 499
>7299061 [A] KOG0335 ATP-dependent RNA helicase
Length = 798
Score = 110 bits (274), Expect = 8e-24
Identities = 90/348 (25%), Positives = 162/348 (45%), Gaps = 38/348 (10%)
Query: 230 DILVNASTGSGKTLAYSVPLVQILR--------------SRTVNKVRAIILVPTKILIHQ 275
D++ A TGSGKT A+ VP++ + SR ++L PT+ L Q
Sbjct: 334 DLMACAQTGSGKTAAFLVPILNQMYELGHVPPPQSTRQYSRRKQYPLGLVLAPTRELATQ 393
Query: 276 VYDCLSKLSQGTSLNVSMSKLENSLKEEHNKFLYNSPDILIITPGRLVDHLQMESFDLKT 335
+++ K + + + ++ N+ E+ + L +++ TPGRL D + L+
Sbjct: 394 IFEEAKKFAYRSRMRPAVLYGGNNTSEQMRE-LDRGCHLIVATPGRLEDMITRGKVGLEN 452
Query: 336 LKFLVLDEADRLLNQSFQNWNQVLFHHLTNDKQDKRPGNVIKMVFSATLTTNAEKLYNLY 395
++FLVLDEADR+L+ F+ + + L +R ++FSAT ++L + +
Sbjct: 453 IRFLVLDEADRMLDMGFEPQIRRIVEQLNMPPTGQRQ----TLMFSATFPKQIQELASDF 508
Query: 396 LHNPKIFLTDSVKLYSIPKKLQELNVNIPTAKSLFKPLLLLRIIHDIKSSA--SRNAKIL 453
L N IFL + + + + I K LL ++ I+ ++++ L
Sbjct: 509 LSN-YIFLA----VGRVGSTSENITQTILWVYEPDKRSYLLDLLSSIRDGPEYTKDSLTL 563
Query: 454 VFVKSNEASIRLESLLHAMLGSGIIEDEYNMFLXXXXXXXXXXXXRKLIQEFASSEQKKS 513
+FV++ + + LE L+ + N + + ++ F S +
Sbjct: 564 IFVETKKGADSLEEFLY----------QCNHPVTSIHGDRTQKEREEALRCFRSGDCP-- 611
Query: 514 VLISTDIMARGIDINEITHVINYDLPISSQQYVHRCGRTARANTEGIA 561
+L++T + ARG+DI + HVIN+DLP ++YVHR GRT R G+A
Sbjct: 612 ILVATAVAARGLDIPHVKHVINFDLPSDVEEYVHRIGRTGRMGNLGVA 659
>Hs13514809 [A] KOG0335 ATP-dependent RNA helicase
Length = 660
Score = 109 bits (273), Expect = 1e-23
Identities = 95/351 (27%), Positives = 159/351 (45%), Gaps = 47/351 (13%)
Query: 230 DILVNASTGSGKTLAYSVPLV-QILRSRTVNKVRAI----------------ILVPTKIL 272
D++ A TGSGKT A+ +P++ QI ++A+ +L PT+ L
Sbjct: 217 DLMACAQTGSGKTAAFLLPILSQIYTDGPGEALKAVKENGRYGRRKQYPISLVLAPTREL 276
Query: 273 IHQVYDCLSKLSQGTSLNVSMSKLENSLKEEHNKFLYNSPDILIITPGRLVDHLQMESFD 332
Q+Y+ K S + + + + ++ L +L+ TPGRLVD ++
Sbjct: 277 AVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRD-LERGCHLLVATPGRLVDMMERGKIG 335
Query: 333 LKTLKFLVLDEADRLLNQSFQNWNQVLFHHLTNDKQDKRPGNVIK--MVFSATLTTNAEK 390
L K+LVLDEADR+L+ F+ + + +QD P ++ M+FSAT +
Sbjct: 336 LDFCKYLVLDEADRMLDMGFEPQIRRIV------EQDTMPPKGVRHTMMFSATFPKEIQM 389
Query: 391 LYNLYLHNPKIFLTDSVKLYSIPKKLQELNVNIPTAKSLFKPLLLLRIIHDIKSSASRNA 450
L +L + IFL + + + + + + L K LL DI + ++
Sbjct: 390 LARDFL-DEYIFLA----VGRVGSTSENITQKVVWVEDLDKRSFLL----DILGATGSDS 440
Query: 451 KILVFVKSNEASIRLESLLHAMLGSGIIEDEYNMFLXXXXXXXXXXXXRKLIQEFASSEQ 510
LVFV++ + + LE L+ + + +F S
Sbjct: 441 LTLVFVETKKGADSLEDFLY----------HEGYACTSIHGDRSQRDREEALHQFRSG-- 488
Query: 511 KKSVLISTDIMARGIDINEITHVINYDLPISSQQYVHRCGRTARANTEGIA 561
K +L++T + ARG+DI+ + HVIN+DLP ++YVHR GRT R G+A
Sbjct: 489 KSPILVATAVAARGLDISNVRHVINFDLPSDIEEYVHRIGRTGRVGNLGLA 539
>7298204 [A] KOG0335 ATP-dependent RNA helicase
Length = 661
Score = 109 bits (273), Expect = 1e-23
Identities = 106/459 (23%), Positives = 198/459 (43%), Gaps = 62/459 (13%)
Query: 115 SDNDVHDEDVSMKDVHSLTPIPQPAKVTNEALKLLDPSTYKSTAWDAATKIH---YDSKM 171
+++D+++ + ++DV P + +N+A+++ A+ IH Y++
Sbjct: 181 NEDDINNNNNIVEDVERKREFYIPPEPSNDAIEIFSSGI--------ASGIHFSKYNNIP 232
Query: 172 VKQFDS-----YEGELDARLLKNITSNFSSETFPIQTILFDKVLPLLNSSFKANRKLFTR 226
VK S + A L I N + + I T + +P+++S
Sbjct: 233 VKVTGSDVPQPIQHFTSADLRDIIIDNVNKSGYKIPTPIQKCSIPVISSG---------- 282
Query: 227 RVGDILVNASTGSGKTLAYSVPLVQIL----RSRTVNKVRAIILVPTKILIHQVYDCLSK 282
D++ A TGSGKT A+ +P++ L + + + +I+ PT+ L Q+++ K
Sbjct: 283 --RDLMACAQTGSGKTAAFLLPILSKLLEDPHELELGRPQVVIVSPTRELAIQIFNEARK 340
Query: 283 LSQGTSLNVSMSKLENSLKEEHNKFLYNSPDILIITPGRLVDHLQMESFDLKTLKFLVLD 342
+ + L + + S + + N+ + ++I TPGRL+D + + +F+VLD
Sbjct: 341 FAFESYLKIGIVYGGTSFRHQ-NECITRGCHVVIATPGRLLDFVDRTFITFEDTRFVVLD 399
Query: 343 EADRLLNQSFQNWNQVLFHHLTNDKQDKRPGNVIKMVFSATLTTNAEKLYNLYLHNPKIF 402
EADR+L+ F + + H+T + + ++FSAT +++ +L N +F
Sbjct: 400 EADRMLDMGFSEDMRRIMTHVTMRPEHQ------TLMFSATFPEEIQRMAGEFLKN-YVF 452
Query: 403 LTDSVKLYSIPKKLQELNVNIPTAKSLFKPLLLLRIIHDIKSSASRNAKILVFVKSNEAS 462
+ + + ++ I K L+ I+ + +VFV++ +
Sbjct: 453 VAIGI----VGGACSDVKQTIYEVNKYAKRSKLIEILSEQADGT------IVFVETKRGA 502
Query: 463 IRLESLLHAMLGSGIIEDEYNMFLXXXXXXXXXXXXRKLIQEFASSEQKKSVLISTDIMA 522
L S L E + +++F + K VLI+T + +
Sbjct: 503 DFLASFL----------SEKEFPTTSIHGDRLQSQREQALRDFKNGSMK--VLIATSVAS 550
Query: 523 RGIDINEITHVINYDLPISSQQYVHRCGRTARANTEGIA 561
RG+DI I HVINYD+P YVHR GRT R G A
Sbjct: 551 RGLDIKNIKHVINYDMPSKIDDYVHRIGRTGRVGNNGRA 589
>YDL160c [A] KOG0326 ATP-dependent RNA helicase
Length = 506
Score = 109 bits (272), Expect = 1e-23
Identities = 93/360 (25%), Positives = 170/360 (46%), Gaps = 41/360 (11%)
Query: 230 DILVNASTGSGKTLAYSVPLVQILRSRTVNKVRAIILVPTKILIHQVYDCLSKLSQGTSL 289
DIL A G+GKT A+ +P ++ ++ + +NK++A+I+VPT+ L Q + L + +
Sbjct: 85 DILARAKNGTGKTAAFVIPTLEKVKPK-LNKIQALIMVPTRELALQTSQVVRTLGKHCGI 143
Query: 290 NVSMSKLENSLKEEHNKFLYNSPDILIITPGRLVDHLQMESFDLKTLKFLVLDEADRLLN 349
+ ++ +L+++ + L + IL+ TPGR++D + DL ++DEAD++L+
Sbjct: 144 SCMVTTGGTNLRDDILR-LNETVHILVGTPGRVLDLASRKVADLSDCSLFIMDEADKMLS 202
Query: 350 QSFQNWNQVLFHHLTNDKQDKRPGNVIKMVFSATLTTNAEKLYNLYLHNP-KIFLTDSVK 408
+ F+ + + L Q ++FSAT ++ +LH P +I L + +
Sbjct: 203 RDFKTIIEQILSFLPPTHQ--------SLLFSATFPLTVKEFMVKHLHKPYEINLMEELT 254
Query: 409 LYSIPK--KLQELNVNIPTAKSLFKPLLLLRIIHDIKSSASRNAKILVFVKSNEASIRLE 466
L I + E + +LF L + + I +F S R+E
Sbjct: 255 LKGITQYYAFVEERQKLHCLNTLFSKLQINQAI--------------IFCNSTN---RVE 297
Query: 467 SLLHAMLGSGIIEDEYNMFLXXXXXXXXXXXXRKLIQEFASSEQKKSVLISTDIMARGID 526
+L I + Y+ + K+ EF + K L+ +D++ RGID
Sbjct: 298 -----LLAKKITDLGYSCY--YSHARMKQQERNKVFHEF--RQGKVRTLVCSDLLTRGID 348
Query: 527 INEITHVINYDLPISSQQYVHRCGRTARANTEGIAINLLVGKGEQKFWSQHIDTDLSRDI 586
I + VIN+D P +++ Y+HR GR+ R G+AINL+ +F I+ +L +I
Sbjct: 349 IQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLI--NWNDRFNLYKIEQELGTEI 406
>Hs13514813 [A] KOG0335 ATP-dependent RNA helicase
Length = 662
Score = 108 bits (271), Expect = 2e-23
Identities = 94/351 (26%), Positives = 160/351 (44%), Gaps = 47/351 (13%)
Query: 230 DILVNASTGSGKTLAYSVPLV-QILRSRTVNKVRA----------------IILVPTKIL 272
D++ A TGSGKT A+ +P++ QI +RA ++L PT+ L
Sbjct: 219 DLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTREL 278
Query: 273 IHQVYDCLSKLSQGTSLNVSMSKLENSLKEEHNKFLYNSPDILIITPGRLVDHLQMESFD 332
Q+Y+ K S + + + + ++ L +L+ TPGRLVD ++
Sbjct: 279 AVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRD-LERGCHLLVATPGRLVDMMERGKIG 337
Query: 333 LKTLKFLVLDEADRLLNQSFQNWNQVLFHHLTNDKQDKRPGNVIK--MVFSATLTTNAEK 390
L K+LVLDEADR+L+ F+ + + +QD P ++ M+FSAT +
Sbjct: 338 LDFCKYLVLDEADRMLDMGFEPQIRRIV------EQDTMPPKGVRHTMMFSATFPKEIQM 391
Query: 391 LYNLYLHNPKIFLTDSVKLYSIPKKLQELNVNIPTAKSLFKPLLLLRIIHDIKSSASRNA 450
L +L + IFL + + + + + + K LL D+ ++ +++
Sbjct: 392 LARDFL-DEYIFLA----VGRVGSTSENITQKVVWVEESDKRSFLL----DLLNATGKDS 442
Query: 451 KILVFVKSNEASIRLESLLHAMLGSGIIEDEYNMFLXXXXXXXXXXXXRKLIQEFASSEQ 510
LVFV++ + + LE L+ + + +F S
Sbjct: 443 LTLVFVETKKGADSLEDFLY----------HEGYACTSIHGDRSQRDREEALHQFRSG-- 490
Query: 511 KKSVLISTDIMARGIDINEITHVINYDLPISSQQYVHRCGRTARANTEGIA 561
K +L++T + ARG+DI+ + HVIN+DLP ++YVHR GRT R G+A
Sbjct: 491 KSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLA 541
>At5g11200 [A] KOG0329 ATP-dependent RNA helicase
Length = 427
Score = 108 bits (271), Expect = 2e-23
Identities = 94/364 (25%), Positives = 172/364 (46%), Gaps = 62/364 (17%)
Query: 230 DILVNASTGSGKTLAYSVPLVQILRSRTVNKVRAIILVPTKILIHQVYDCLSKLSQ---G 286
D++ A +G GKT + + +Q + + +V A++L T+ L +Q+ + + S
Sbjct: 85 DVICQAKSGMGKTAVFVLSTLQQIEP-SPGQVSALVLCHTRELAYQICNEFVRFSTYLPD 143
Query: 287 TSLNVSMSKLENSLKEEHNKFLYNS-PDILIITPGRLVDHLQMESFDLKTLKFLVLDEAD 345
T ++V + + H L N P I++ TPGR++ + + LK ++ +LDE D
Sbjct: 144 TKVSVFYGGVNIKI---HKDLLKNECPHIVVGTPGRVLALAREKDLSLKNVRHFILDECD 200
Query: 346 RLLNQ-SFQNWNQVLFHHLTNDKQDKRPGNVIKMVFSATLTTNAEKLYNLYLHNP-KIFL 403
++L + Q +F +DKQ M+FSATL+ + ++ +P +I++
Sbjct: 201 KMLESLDMRRDVQEIFKMTPHDKQ--------VMMFSATLSKEIRPVCKKFMQDPMEIYV 252
Query: 404 TDSVKL--YSIPK---KLQELNVNIPTAKSLFKPLLLLRIIHDIKSSASRNAKILVFVKS 458
D KL + + + KL E+ N R ++D+ + N ++++FVKS
Sbjct: 253 DDEAKLTLHGLVQHYIKLSEMEKN--------------RKLNDLLDALDFN-QVVIFVKS 297
Query: 459 NEASIRLESLL------HAMLGSGIIEDEYNMFLXXXXXXXXXXXXRKLIQEFASSEQKK 512
+ L LL + SG+ ++E +L + + E K
Sbjct: 298 VSRAAELNKLLVECNFPSICIHSGMSQEE------------------RLTRYKSFKEGHK 339
Query: 513 SVLISTDIMARGIDINEITHVINYDLPISSQQYVHRCGRTARANTEGIAINLLVGKGEQK 572
+L++TD++ RGIDI + VINYD+P S+ Y+HR GR R T+G+AI + + +
Sbjct: 340 RILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVASASDSE 399
Query: 573 FWSQ 576
+Q
Sbjct: 400 VLNQ 403
>7298459 [A] KOG0333 U5 snRNP-like RNA helicase subunit
Length = 802
Score = 108 bits (271), Expect = 2e-23
Identities = 100/363 (27%), Positives = 164/363 (44%), Gaps = 56/363 (15%)
Query: 230 DILVNASTGSGKTLAYSVPLVQILRSRT-VNKVR-------AIILVPTKILIHQVYDCLS 281
DI+ A TGSGKTLA+ +PL+ ++S + ++ AII+ PT+ L Q+ + +
Sbjct: 433 DIIGVAETGSGKTLAFLIPLLSWIQSLPKIERLEDVDQGPYAIIMAPTRELAQQIEEETT 492
Query: 282 KLSQGTSLNVSMSKLENSLKEEHNKF-LYNSPDILIITPGRLVDHLQMESFDLKTLKFLV 340
K Q L + + L E F L +I+I TPGRL+D L+ L ++V
Sbjct: 493 KFGQ--PLGIRTVVVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIV 550
Query: 341 LDEADRLLNQSFQNWNQVLFHHL--TNDKQDKRPGN---------------VIKMVFSAT 383
LDEADR+++ F+ Q + ++ TN K D ++F+AT
Sbjct: 551 LDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEEAEDETKLMENFYTKKKYRQTVMFTAT 610
Query: 384 LTTNAEKLYNLYLHNPKIFLTDSVKLYSIPKKLQELNVNIPTAKSLFKPLLLLRIIHDIK 443
+ E+L YL P +V + S+ K + + K L+ I+
Sbjct: 611 MPPAVERLARTYLRRPA-----TVYIGSVGKPTERTEQIVYMMGENDKRKKLMEIL---- 661
Query: 444 SSASRNAKILVFVKSNEASIRLESLLHAMLGSGIIEDEYNMFLXXXXXXXXXXXXRKLIQ 503
S + +++FV + + +L G+ + YN +
Sbjct: 662 -SRKIDPPVIIFVNQKKGA--------DVLAKGLEKLGYNSCTLHGGKGQEQ-------R 705
Query: 504 EFASSEQK---KSVLISTDIMARGIDINEITHVINYDLPISSQQYVHRCGRTARANTEGI 560
E+A + K K +L++TD+ RGIDI +++ VINYD+ + + Y HR GRT RA G
Sbjct: 706 EYALAALKSGAKDILVATDVAGRGIDIKDVSLVINYDMAKTIEDYTHRIGRTGRAGKTGC 765
Query: 561 AIN 563
AI+
Sbjct: 766 AIS 768
>YPL119c [A] KOG0335 ATP-dependent RNA helicase
Length = 617
Score = 108 bits (270), Expect = 2e-23
Identities = 116/452 (25%), Positives = 189/452 (41%), Gaps = 71/452 (15%)
Query: 134 PIPQPAKVTNEALKLLDPSTYKSTA--WDAATKIHYDS--KMVKQ--FDSYEGELDARLL 187
P P+ AK+ E + D Y S+ +D I D+ K V + D LD L+
Sbjct: 107 PGPKNAKLEAELFGVHDDPDYHSSGIKFDNYDNIPVDASGKDVPEPILDFSSPPLDELLM 166
Query: 188 KNITSNFSSETFPIQTILFDKVLPLLNSSFKANRKLFTRRVGDILVNASTGSGKTLAYSV 247
+NI ++ P+Q +P++ D++ A TGSGKT +
Sbjct: 167 ENIKLASFTKPTPVQKYS----IPIVTKG------------RDLMACAQTGSGKTGGFLF 210
Query: 248 PLVQILRSRTVNKV--------------RAIILVPTKILIHQVYDCLSKLSQGTSLNVSM 293
PL L + V A++L PT+ L Q+++ K + + + +
Sbjct: 211 PLFTELFRSGPSPVPEKAQSFYSRKGYPSALVLAPTRELATQIFEEARKFTYRSWVRPCV 270
Query: 294 ----SKLENSLKEEHNKFLYNSPDILIITPGRLVDHLQMESFDLKTLKFLVLDEADRLLN 349
+ + N ++E + D+L+ TPGRL D L+ L +K+LVLDEADR+L+
Sbjct: 271 VYGGAPIGNQMRE-----VDRGCDLLVATPGRLNDLLERGKVSLANIKYLVLDEADRMLD 325
Query: 350 QSFQNWNQVLFHHLTNDKQDKRPGNVIKMVFSATLTTNAEKLYNLYLHNPKIFLTDSVKL 409
F+ H+ + N ++FSAT + + L +L N IFL+ +
Sbjct: 326 MGFEPQ----IRHIVEECDMPSVENRQTLMFSATFPVDIQHLARDFLDN-YIFLS----V 376
Query: 410 YSIPKKLQELNVNIPTAKSLFKPLLLLRIIHDIKSSASRNAKILVFVKSNEASIRLESLL 469
+ + + I + K LL ++ SA L+FV++ + +L L
Sbjct: 377 GRVGSTSENITQRILYVDDMDKKSALLDLL-----SAEHKGLTLIFVETKRMADQLTDFL 431
Query: 470 HAMLGSGIIEDEYNMFLXXXXXXXXXXXXRKLIQEFASSEQKKSVLISTDIMARGIDINE 529
N + + F ++ +L++T + ARG+DI
Sbjct: 432 IMQ----------NFKATAIHGDRTQAERERALSAFKANVA--DILVATAVAARGLDIPN 479
Query: 530 ITHVINYDLPISSQQYVHRCGRTARANTEGIA 561
+THVINYDLP YVHR GRT RA G+A
Sbjct: 480 VTHVINYDLPSDIDDYVHRIGRTGRAGNTGVA 511
>SPBP8B7.16c [A] KOG0331 ATP-dependent RNA helicase
Length = 550
Score = 108 bits (270), Expect = 2e-23
Identities = 91/345 (26%), Positives = 161/345 (46%), Gaps = 49/345 (14%)
Query: 230 DILVNASTGSGKTLAYSVPLVQILRSRTV----NKVRAIILVPTKILIHQVYDCLSKLSQ 285
D++ ++TGSGKTL+Y +P + + ++ + + ++L PT+ L Q+ +K +
Sbjct: 161 DMVGISATGSGKTLSYCLPAIVHINAQPLLSPGDGPIVLVLAPTRELAVQIQQECTKFGK 220
Query: 286 GTSLNVSMSKLENSLKEEHNKFLYNSPDILIITPGRLVDHLQMESFDLKTLKFLVLDEAD 345
+ + + + + L +I I TPGRL+D L +L+ + +LVLDEAD
Sbjct: 221 SSRIR-NTCVYGGVPRGPQIRDLIRGVEICIATPGRLLDMLDSNKTNLRRVTYLVLDEAD 279
Query: 346 RLLNQSFQNWNQVLFHHLTNDKQDKRPGNVIKMVFSATLTTNAEKLYNLYLHNPKIFLTD 405
R+L+ F+ + + + D+Q ++FSAT ++L YL++
Sbjct: 280 RMLDMGFEPQIRKIVDQIRPDRQ--------TVMFSATWPKEVQRLARDYLNDYIQVTVG 331
Query: 406 SVKLYSIP--KKLQELNVNIPTAKSLFKPLLLLRIIHDIKSSASRNAKILVFVKSNEASI 463
S+ L + K++ E+ N L K + ++ D R+ K+L+F
Sbjct: 332 SLDLAASHNIKQIVEVVDNADKRARLGKD--IEEVLKD------RDNKVLIFT------- 376
Query: 464 RLESLLHAMLGSGIIEDEYNMFLXXXXXXXXXXXXRK-------LIQEFASSEQKKSVLI 516
G+ + D+ FL K ++ EF + K +++
Sbjct: 377 ----------GTKRVADDITRFLRQDGWPALAIHGDKAQDERDWVLNEFRTG--KSPIMV 424
Query: 517 STDIMARGIDINEITHVINYDLPISSQQYVHRCGRTARANTEGIA 561
+TD+ +RGID+ ITHV NYD P +++ YVHR GRT RA +G A
Sbjct: 425 ATDVASRGIDVKGITHVFNYDFPGNTEDYVHRIGRTGRAGAKGTA 469
>CE09901 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 involved in
rRNA maturation DEAD-box superfamily
Length = 399
Score = 108 bits (270), Expect = 2e-23
Identities = 96/370 (25%), Positives = 174/370 (46%), Gaps = 46/370 (12%)
Query: 230 DILVNASTGSGKTLAYSVPLVQILRSRTVNKVRAIILVPTKILIHQVYDCLSKLSQGTSL 289
D++ A +G+GKT +S+ ++Q L ++ V + +A+IL PT+ L Q+ + L ++
Sbjct: 65 DVIAQAQSGTGKTATFSISVLQSLDTQ-VRETQALILSPTRELAVQIQKVVLALGDYMNV 123
Query: 290 NVSMSKLENSLKEEHNKFLYNSPDILIITPGRLVDHLQMESFDLKTLKFLVLDEADRLLN 349
+L E+ K Y ++ TPGR+ D ++ + + +K LVLDEAD +LN
Sbjct: 124 QCHACIGGTNLGEDIRKLDYGQ-HVVSGTPGRVFDMIRRRNLRTRAIKLLVLDEADEMLN 182
Query: 350 QSFQNWNQVLFHHLTNDKQDKRPGNVIKMVFSATLTTNAEKLYNLYLHNPKIFLT--DSV 407
+ F+ ++ +L P ++ SATL ++ + ++ +P L D +
Sbjct: 183 KGFKEQLYDIYRYL--------PPGAQVVLLSATLPHEILEMTSKFMTDPIRILVKRDEL 234
Query: 408 KLYSIPKKLQELNVNIPTAKSLFKPLLLLRIIHDIKSSASRNAKILVFVKSNEASIRLES 467
L I + ++ +L L I + +R + K EA+ + S
Sbjct: 235 TLEGIKQFFVAVDREEWKFDTLIDLYDTLTITQAVLFCNTRRKVDWLTDKMKEANFTVSS 294
Query: 468 LLHAMLGSGIIEDEYNMFLXXXXXXXXXXXXRKLIQEFASSEQKKSVLISTDIMARGIDI 527
+ G +E + ++++EF + + VLISTD+ ARG+D+
Sbjct: 295 M------HGDMEQK---------------DRDEVMKEFRAGTTR--VLISTDVWARGLDV 331
Query: 528 NEITHVINYDLPISSQQYVHRCGRTARANTEGIAINLLVGKGEQKFWSQHIDTDLSRDID 587
+++ VINYDLP + + Y+HR GR+ R +G+AIN + + D + RDI+
Sbjct: 332 PQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFV----------KQDDVRILRDIE 381
Query: 588 GYQPSAYLDE 597
Y S +DE
Sbjct: 382 QYY-STQIDE 390
>7295505 [A] KOG0346 RNA helicase
Length = 560
Score = 108 bits (270), Expect = 2e-23
Identities = 108/410 (26%), Positives = 183/410 (44%), Gaps = 46/410 (11%)
Query: 173 KQFDSYEGELDARLLKNITSNFSSETFPIQTILFDKVLPLLNSSFKANRKLFTRRVGDIL 232
K +E ELD R+LK + + T++ +PLL D++
Sbjct: 7 KTVQFHELELDQRILKAVAQLGWQQP----TLIQSTAIPLLLEG------------KDVV 50
Query: 233 VNASTGSGKTLAYSVPLVQILRSRTVNK----VRAIILVPTKILIHQVYDCLSKLSQGTS 288
V A TGSGKT Y++PL+Q + + +N V A++L PTK L Q + +L +
Sbjct: 51 VRARTGSGKTATYALPLIQKILNSKLNASEQYVSAVVLAPTKKLCRQSRKVIEQLVESCG 110
Query: 289 LNVSMSKLENSLKEE--HNKFLYNSPDILIITPGRLVDHLQMESF-DLKTLKFLVLDEAD 345
V ++ + +S + L SPDI++ TP L+ + + S DLK ++ LV+DEAD
Sbjct: 111 KVVRVADIADSSNDTVTQRHALSESPDIVVATPANLLAYAEAGSVVDLKHVETLVVDEAD 170
Query: 346 RLLNQSFQNWNQVLFHHLTNDKQDKRPGNVIKMVFSATLTTNAEKLYNLYLHNPKIFLTD 405
+ ++ + L HL P ++ SATLT + ++ L L+NP +
Sbjct: 171 LVFAYGYEKDFKRLIKHL--------PPIYQAVLVSATLTDDVVRMKGLCLNNPVTLKLE 222
Query: 406 SVKLYSIPKKL---QELNVNIPTAKSLFKPLLLLRIIHD----IKSSASRNAKILVFVKS 458
+L +P+ Q + ++ LL LR+I +S R K+ +F++
Sbjct: 223 EPEL--VPQDQLSHQRILAEENDKPAILYALLKLRLIRGKSIIFVNSIDRCYKVRLFLE- 279
Query: 459 NEASIRLESLLHAMLGSGIIEDEYNMFLXXXXXXXXXXXXRKLIQEFASSEQKKSVLIST 518
+ IR +L++ L + I + F + + S + S
Sbjct: 280 -QFGIRA-CVLNSELPANIRIHTISQFNKGTYDIIIASDEHHMEKPGGKSATNRKSPRSG 337
Query: 519 DI---MARGIDINEITHVINYDLPISSQQYVHRCGRTARANTEGIAINLL 565
D+ +RGID + +VIN+D P Y+HR GRTAR N +G ++ +
Sbjct: 338 DMESSASRGIDFQCVNNVINFDFPRDVTSYIHRAGRTARGNNKGSVLSFV 387
>Hs4758138 [A] KOG0331 ATP-dependent RNA helicase
Length = 614
Score = 108 bits (269), Expect = 3e-23
Identities = 95/337 (28%), Positives = 158/337 (46%), Gaps = 33/337 (9%)
Query: 230 DILVNASTGSGKTLAYSVPLVQILRSRTV----NKVRAIILVPTKILIHQVYDCLSKLSQ 285
D++ A TGSGKTL+Y +P + + + + ++L PT+ L QV ++ +
Sbjct: 133 DMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCR 192
Query: 286 GTSLNVSMSKLENSLKEEHNKFLYNSPDILIITPGRLVDHLQMESFDLKTLKFLVLDEAD 345
L S + K + L +I I TPGRL+D L+ +L+ +LVLDEAD
Sbjct: 193 ACRLK-STCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEAD 251
Query: 346 RLLNQSFQNWNQVLFHHLTNDKQDKRPGNVIKMVFSATLTTNAEKLYNLYLHNPKIFLTD 405
R+L+ F+ + + + D+Q +++SAT +L +L +
Sbjct: 252 RMLDMGFEPQIRKIVDQIRPDRQ--------TLMWSATWPKEVRQLAEDFLKDYIHINIG 303
Query: 406 SVKLYSIPKKLQELNVNIPTAKSLFKPLLLLRIIHDIKSSASRNAKILVFVKSNEASIRL 465
+++L + LQ ++V + K L+R++ +I S + K +VFV E R
Sbjct: 304 ALELSANHNILQIVDV----CHDVEKDEKLIRLMEEIMS--EKENKTIVFV---ETKRRC 354
Query: 466 ESLLHAMLGSGIIEDEYNMFLXXXXXXXXXXXXRK-LIQEFASSEQKKSVLISTDIMARG 524
+ L M G + R ++ EF K +LI+TD+ +RG
Sbjct: 355 DELTRKMRRDG--------WPAMGIHGDKSQQERDWVLNEF--KHGKAPILIATDVASRG 404
Query: 525 IDINEITHVINYDLPISSQQYVHRCGRTARANTEGIA 561
+D+ ++ VINYD P SS+ Y+HR GRTAR+ G A
Sbjct: 405 LDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTA 441
>CE28485 [K] KOG4284 DEAD box protein
Length = 963
Score = 108 bits (269), Expect = 3e-23
Identities = 94/345 (27%), Positives = 168/345 (48%), Gaps = 37/345 (10%)
Query: 223 LFTRRVGDILVNASTGSGKTLAYSVPLVQILRSRTVNKVRAIILVPTKILIHQVYDCLSK 282
L T D+LV A +G+GKTL +SV V+ L SR+ + ++ +I+ PT+ + Q+ + + K
Sbjct: 44 LKTAIFSDMLVQAKSGTGKTLVFSVLAVENLDSRS-SHIQKVIVTPTREISVQIKETVRK 102
Query: 283 LSQGTSLNVSMSKLENSLKEEHNKFLYNSPDILIITPGRLVDHLQMESFDLKTLKFLVLD 342
++ T S+ ++ K P I+I TPGR+ +++ + ++ + F VLD
Sbjct: 103 VAP-TGARTSVYVGGSAHKLNLIDLKQTRPQIVIGTPGRIAQLVKLGAMNMSHVDFFVLD 161
Query: 343 EADRLLNQSFQNWNQVLFHHLTNDKQDKRPGNVIKMVFSATLTTNAEKLYNLYLHNPKI- 401
EAD+L+++ F++ ++ + L +Q VFSAT N + L + +L + +
Sbjct: 162 EADKLMDEVFRDDINIIINSLPQIRQ--------VAVFSATYPRNLDNLLSTFLRDAALV 213
Query: 402 -FLTDSVKLYSIPKKLQELNVNIPTAKSLFKPLLLLRIIHDIKSSASRNAKILVFVKSNE 460
F D V+L+ I + + AK +L ++ H +KS R + LVF +
Sbjct: 214 RFNADDVQLFGIKQYV--------VAKC---SPMLEKLTHVLKS--IRYVQALVFC---D 257
Query: 461 ASIRLESLLHAMLGSGIIEDEYNMFLXXXXXXXXXXXXRKLIQEFASSEQKKSVLISTDI 520
+ E + + SG+ R+L + +++ K +L+S+D+
Sbjct: 258 QISKCEPIATHLKSSGLD--------VTFVSSAMSQKDRQLAVDQLRAKRVK-ILVSSDL 308
Query: 521 MARGIDINEITHVINYDLPISSQQYVHRCGRTARANTEGIAINLL 565
ARGID + + V+N D + + Y HR GR AR G A+ LL
Sbjct: 309 TARGIDADNVNLVVNIDAAANEETYFHRIGRAARFGAHGAAVTLL 353
>7297629 [A] KOG0326 ATP-dependent RNA helicase
Length = 458
Score = 108 bits (269), Expect = 3e-23
Identities = 93/360 (25%), Positives = 166/360 (45%), Gaps = 41/360 (11%)
Query: 230 DILVNASTGSGKTLAYSVPLVQILRSRTVNKVRAIILVPTKILIHQVYDCLSKLSQGTSL 289
D+L A G+GKT AY +P+++ + T + ++A+++VPT+ L Q +L++ +
Sbjct: 96 DVLARAKNGTGKTGAYCIPVLEQI-DPTKDYIQALVMVPTRELALQTSQICIELAKHLDI 154
Query: 290 NVSMSKLENSLKEEHNKFLYNSPDILIITPGRLVDHLQMESFDLKTLKFLVLDEADRLLN 349
V ++ LK++ + +Y ++I TPGR++D + + D+ + LVLDEAD+LL+
Sbjct: 155 RVMVTTGGTILKDDILR-IYQKVQLIIATPGRILDLMDKKVADMSHCRILVLDEADKLLS 213
Query: 350 QSFQNWNQVLFHHLTNDKQDKRPGNVIKMVFSATLTTNAEKLYNLYLHNP-KIFLTDSVK 408
FQ + L D Q ++FSAT + +L P +I L + +
Sbjct: 214 LDFQGMLDHVILKLPKDPQ--------ILLFSATFPLTVKNFMEKHLREPYEINLMEELT 265
Query: 409 LYSIPK--KLQELNVNIPTAKSLFKPLLLLRIIHDIKSSASRNAKILVFVKSNEASIRLE 466
L + + + + +LF L + + I +F S + R+E
Sbjct: 266 LKGVTQYYAFVQERQKVHCLNTLFSKLQINQSI--------------IFCNSTQ---RVE 308
Query: 467 SLLHAMLGSGIIEDEYNMFLXXXXXXXXXXXXRKLIQEFASSEQKKSVLISTDIMARGID 526
+L I E Y + ++ +F + L+ +D+ RGID
Sbjct: 309 -----LLAKKITELGYCCY--YIHAKMAQAHRNRVFHDFRQGLCRN--LVCSDLFTRGID 359
Query: 527 INEITHVINYDLPISSQQYVHRCGRTARANTEGIAINLLVGKGEQKFWSQHIDTDLSRDI 586
+ + VIN+D P ++ Y+HR GR+ R GIAINL+ E +F I+ +L +I
Sbjct: 360 VQAVNVVINFDFPRMAETYLHRIGRSGRFGHLGIAINLIT--YEDRFDLHRIEKELGTEI 417
>At5g11170 [A] KOG0329 ATP-dependent RNA helicase
Length = 435
Score = 107 bits (268), Expect = 4e-23
Identities = 92/361 (25%), Positives = 171/361 (46%), Gaps = 56/361 (15%)
Query: 230 DILVNASTGSGKTLAYSVPLVQILRSRTVNKVRAIILVPTKILIHQVYDCLSKLSQ---G 286
D++ A +G GKT + + +Q + + +V A++L T+ L +Q+ + + S
Sbjct: 85 DVICQAKSGMGKTAVFVLSTLQQIEP-SPGQVSALVLCHTRELAYQICNEFVRFSTYLPD 143
Query: 287 TSLNVSMSKLENSLKEEHNKFLYNS-PDILIITPGRLVDHLQMESFDLKTLKFLVLDEAD 345
T ++V + + H L N P I++ TPGR++ + + LK ++ +LDE D
Sbjct: 144 TKVSVFYGGVNIKI---HKDLLKNECPHIVVGTPGRVLALAREKDLSLKNVRHFILDECD 200
Query: 346 RLLNQ-SFQNWNQVLFHHLTNDKQDKRPGNVIKMVFSATLTTNAEKLYNLYLHNP-KIFL 403
++L + Q +F +DKQ M+FSATL+ + ++ +P +I++
Sbjct: 201 KMLESLDMRRDVQEIFKMTPHDKQ--------VMMFSATLSKEIRPVCKKFMQDPMEIYV 252
Query: 404 TDSVKL--YSIPKKLQELNVNIPTAKSLFKPLLLLRIIHDIKSSASRNAKILVFVKSNEA 461
D KL + + + +L+ T K ++D+ + N ++++FVKS
Sbjct: 253 DDEAKLTLHGLVQHYIKLSEMEKTRK-----------LNDLLDALDFN-QVVIFVKSVSR 300
Query: 462 SIRLESLL------HAMLGSGIIEDEYNMFLXXXXXXXXXXXXRKLIQEFASSEQKKSVL 515
+ L LL + SG+ ++E +L + + E K +L
Sbjct: 301 AAELNKLLVECNFPSICIHSGMSQEE------------------RLTRYKSFKEGHKRIL 342
Query: 516 ISTDIMARGIDINEITHVINYDLPISSQQYVHRCGRTARANTEGIAINLLVGKGEQKFWS 575
++TD++ RGIDI + VINYD+P S+ Y+HR GR R T+G+AI + + + +
Sbjct: 343 VATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVASASDSEVLN 402
Query: 576 Q 576
Q
Sbjct: 403 Q 403
>At3g13920 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 412
Score = 107 bits (268), Expect = 4e-23
Identities = 89/357 (24%), Positives = 169/357 (46%), Gaps = 47/357 (13%)
Query: 230 DILVNASTGSGKTLAYSVPLVQILRSRTVNKVRAIILVPTKILIHQVYDCLSKLSQGTSL 289
D++ A +G+GKT + ++Q L + + +A++L PT+ L Q+ + L +
Sbjct: 78 DVIQQAQSGTGKTATFCSGVLQQLDFSLI-QCQALVLAPTRELAQQIEKVMRALGDYLGV 136
Query: 290 NVSMSKLENSLKEEHNKFLYNSPDILIITPGRLVDHLQMESFDLKTLKFLVLDEADRLLN 349
V S++E+ + L +++ TPGR+ D L+ +S +K VLDEAD +L+
Sbjct: 137 KVHACVGGTSVREDQ-RILQAGVHVVVGTPGRVFDMLKRQSLRADNIKMFVLDEADEMLS 195
Query: 350 QSFQNWNQVLFHHLTNDKQDKRPGNVIKMVFSATLTTNAEKLYNLYLHNPKIFLT--DSV 407
+ F++ +F L P + VFSAT+ A ++ ++ P L D +
Sbjct: 196 RGFKDQIYDIFQLL--------PPKIQVGVFSATMPPEALEITRKFMSKPVRILVKRDEL 247
Query: 408 KLYSIPK---KLQELNVNIPTAKSLFKPLLLLRIIHDIKSSASRNAKILVFVKSNEASIR 464
L I + +++ + T L++ L + + + + + K + + +
Sbjct: 248 TLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRR----------KVDWLTDK 297
Query: 465 LESLLHAMLGSGIIEDEYNMFLXXXXXXXXXXXXRKLIQEFASSEQKKSVLISTDIMARG 524
+ S H + + D+ + +++EF S + VLI+TD++ARG
Sbjct: 298 MRSRDHTVSATHGDMDQNTRDI--------------IMREFRSGSSR--VLITTDLLARG 341
Query: 525 IDINEITHVINYDLPISSQQYVHRCGRTARANTEGIAINLLVGKGE------QKFWS 575
ID+ +++ VIN+DLP + Y+HR GR+ R +G+AIN + E QKF++
Sbjct: 342 IDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYN 398
>CE28031 [A] KOG0334 RNA helicase
Length = 747
Score = 107 bits (267), Expect = 5e-23
Identities = 95/350 (27%), Positives = 166/350 (47%), Gaps = 36/350 (10%)
Query: 230 DILVNASTGSGKTLAYSVPLVQILRSRTVNKVR----AIILVPTKILIHQVYDCLSKLSQ 285
D++ A TGSGKTLA+ +P+ + + + + A+IL PT+ L Q Y +K ++
Sbjct: 343 DVIGIAKTGSGKTLAFLLPMFRHILDQPELEEGDGPIAVILAPTRELAMQTYKEANKFAK 402
Query: 286 GTSLNVSMSKLENSLKEEHNKFLYNSPDILIITPGRLVDHLQMES---FDLKTLKFLVLD 342
L V+ + + E+ L +I++ TPGR++D L S +L+ + +LVLD
Sbjct: 403 PLGLKVACTYGGVGISEQIAD-LKRGAEIVVCTPGRMIDVLAANSGKVTNLRRVTYLVLD 461
Query: 343 EADRLLNQSFQNWNQVLFHHLTNDKQDKRPGNVIKMVFSATLTTNAEKLYNLYLHNPKIF 402
EADR+ ++ F+ + +++ DKQ ++FSAT + E L L P
Sbjct: 462 EADRMFDKGFEPQIMKVVNNIRPDKQT--------VLFSATFPRHMEALARKVLDKPVEI 513
Query: 403 LTDSVKLYSIPKKLQELNVNIPTAKSLFKPLLLLRIIHDIKSSASRNAKILVFVKSNEAS 462
L + + + + V + K L LL + ++ SS +VFV E
Sbjct: 514 LVGGKSV--VCSDITQNAVICAEHQKFLKLLELLGMYYEEGSS-------IVFVDKQE-- 562
Query: 463 IRLESLLHAMLGSGIIEDEYNMFLXXXXXXXXXXXXRKLIQEFASSEQKKSVLISTDIMA 522
+ + ++ ++ +G YN + I +F + K VL++T + A
Sbjct: 563 -KADDIVDQLMRTG-----YNS-VAPLHGGIDQHDRDSSIADFKTGVIK--VLVATSVAA 613
Query: 523 RGIDINEITHVINYDLPISSQQYVHRCGRTARANTEGIAINLLVGKGEQK 572
RG+D+ + V+NYD P + YVHR GRT RA +G A ++ + ++K
Sbjct: 614 RGLDVKNLILVVNYDCPNHYEDYVHRVGRTGRAGRKGYAYTFVLPEHQEK 663
>CE27427 [A] KOG0334 RNA helicase
Length = 970
Score = 107 bits (267), Expect = 5e-23
Identities = 95/350 (27%), Positives = 166/350 (47%), Gaps = 36/350 (10%)
Query: 230 DILVNASTGSGKTLAYSVPLVQILRSRTVNKVR----AIILVPTKILIHQVYDCLSKLSQ 285
D++ A TGSGKTLA+ +P+ + + + + A+IL PT+ L Q Y +K ++
Sbjct: 343 DVIGIAKTGSGKTLAFLLPMFRHILDQPELEEGDGPIAVILAPTRELAMQTYKEANKFAK 402
Query: 286 GTSLNVSMSKLENSLKEEHNKFLYNSPDILIITPGRLVDHLQMES---FDLKTLKFLVLD 342
L V+ + + E+ L +I++ TPGR++D L S +L+ + +LVLD
Sbjct: 403 PLGLKVACTYGGVGISEQIAD-LKRGAEIVVCTPGRMIDVLAANSGKVTNLRRVTYLVLD 461
Query: 343 EADRLLNQSFQNWNQVLFHHLTNDKQDKRPGNVIKMVFSATLTTNAEKLYNLYLHNPKIF 402
EADR+ ++ F+ + +++ DKQ ++FSAT + E L L P
Sbjct: 462 EADRMFDKGFEPQIMKVVNNIRPDKQT--------VLFSATFPRHMEALARKVLDKPVEI 513
Query: 403 LTDSVKLYSIPKKLQELNVNIPTAKSLFKPLLLLRIIHDIKSSASRNAKILVFVKSNEAS 462
L + + + + V + K L LL + ++ SS +VFV E
Sbjct: 514 LVGGKSV--VCSDITQNAVICAEHQKFLKLLELLGMYYEEGSS-------IVFVDKQE-- 562
Query: 463 IRLESLLHAMLGSGIIEDEYNMFLXXXXXXXXXXXXRKLIQEFASSEQKKSVLISTDIMA 522
+ + ++ ++ +G YN + I +F + K VL++T + A
Sbjct: 563 -KADDIVDQLMRTG-----YNS-VAPLHGGIDQHDRDSSIADFKTGVIK--VLVATSVAA 613
Query: 523 RGIDINEITHVINYDLPISSQQYVHRCGRTARANTEGIAINLLVGKGEQK 572
RG+D+ + V+NYD P + YVHR GRT RA +G A ++ + ++K
Sbjct: 614 RGLDVKNLILVVNYDCPNHYEDYVHRVGRTGRAGRKGYAYTFVLPEHQEK 663
>7303950 [A] KOG0340 ATP-dependent RNA helicase
Length = 521
Score = 107 bits (267), Expect = 5e-23
Identities = 95/347 (27%), Positives = 164/347 (46%), Gaps = 50/347 (14%)
Query: 230 DILVNASTGSGKTLAYSVPLVQILRSRTVNKVRAIILVPTKILIHQVYDCLSKLSQGTSL 289
D + A TGSGKT A+++P+++ L V+ A++L PT L +Q+ + Q +
Sbjct: 46 DCIGAAKTGSGKTFAFALPILERLSEEPVSHF-ALVLTPTHELAYQISEQFLVAGQAMGV 104
Query: 290 NVSMSKLENSLKEEHNKFLYNSPDILIITPGRLVDHLQ-MESFDLKTLKFLVLDEADRLL 348
V + E K L P I++ PGRL DHL ++F LK+LV+DEADR+L
Sbjct: 105 RVCVVSGGTDQMVESQK-LMQRPHIVVAMPGRLADHLTGCDTFSFDNLKYLVVDEADRML 163
Query: 349 NQSFQNWNQVLFHHLTNDKQDKRPGNVIKMVFSATLTTNAEKLYNLYLHNPKIFLTDSVK 408
N F ++ L +Q+ + FSAT+ K F+ +S
Sbjct: 164 NGDFDESLSIIERCLPKTRQN--------LFFSATM---------------KDFIKES-S 199
Query: 409 LYSIPKKLQE--LNVNIPTAKSLFKPLLL-------LRIIHDIKS--SASRNAKILVFVK 457
++ I E + ++ T ++L + LL + +I ++ + NA +++F
Sbjct: 200 IFPIASDCFEWSQDSDVATVETLDQRYLLCADYDRDMVLIEALRKYREENENANVMIFTN 259
Query: 458 SNEASIRLESLLHAMLGSGIIEDEYNMFLXXXXXXXXXXXXRKLIQEFASSEQKKSVLIS 517
+ + L L M + N+ L + F S++ + LI+
Sbjct: 260 TKKYCQLLSMTLKNM-------EIDNVCLHGFMRQKERVAA---LSRFKSNQIR--TLIA 307
Query: 518 TDIMARGIDINEITHVINYDLPISSQQYVHRCGRTARANTEGIAINL 564
TD+ ARG+DI + V+N+ LP + ++Y+HR GRTARA +G++I++
Sbjct: 308 TDVAARGLDIPSVELVMNHMLPRTPKEYIHRVGRTARAGRKGMSISI 354
>7298989 [A] KOG0336 ATP-dependent RNA helicase
Length = 703
Score = 107 bits (266), Expect = 7e-23
Identities = 96/352 (27%), Positives = 157/352 (44%), Gaps = 60/352 (17%)
Query: 230 DILVNASTGSGKTLAYSVPLV-----QILRSRTVNKVRAIILVPTKILIHQVYDCLSKLS 284
D++ A TG+GKTLA+ +P + Q T ++L PT+ L Q+ + K S
Sbjct: 322 DMIGIAQTGTGKTLAFLLPGMIHTEYQSTPRGTRGGANVLVLAPTRELALQIEMEVKKYS 381
Query: 285 ----------QGTSLNVSMSKLENSLKEEHNKFLYNSPDILIITPGRLVDHLQMESFDLK 334
G + N+ +S LE +I+I TPGRL D + D+
Sbjct: 382 FRGMKAVCVYGGGNRNMQISDLERGA------------EIIICTPGRLNDLIMANVIDVS 429
Query: 335 TLKFLVLDEADRLLNQSFQNWNQVLFHHLTNDKQDKRPGNVIKMVFSATLTTNAEKLYNL 394
T+ +LVLDEADR+L+ F+ + + + D+Q ++ SAT +L
Sbjct: 430 TITYLVLDEADRMLDMGFEPQIRKVMLDIRPDRQT--------IMTSATWPPGVRRLAQS 481
Query: 395 YLHNPKIFLTDSVKLYSIPKKLQELNVNIPTAKSLFKPLLLLRIIHDIKSSASRNAKILV 454
Y+ NP S+ L + Q + K + + I + S KI++
Sbjct: 482 YMKNPIQVCVGSLDLAATHSVKQII-------KLMEDDMDKFNTITSFVKNMSSTDKIII 534
Query: 455 FVKSNEASIRLESLLHAMLGSGIIEDEYNMFLXXXXXXXXXXXXRKLIQEFASSEQKKSV 514
F +R + L + G + + ++ +E A ++ K V
Sbjct: 535 FCGRK---VRADDLSSELTLDGFMTQCIH------------GNRDQMDREQAIADIKSGV 579
Query: 515 ---LISTDIMARGIDINEITHVINYDLPISSQQYVHRCGRTARANTEGIAIN 563
L++TD+ +RG+DI +ITHVINYD P + ++YVHR GRT RA +G +I+
Sbjct: 580 VRILVATDVASRGLDIEDITHVINYDFPHNIEEYVHRVGRTGRAGRQGTSIS 631
>SPBC12C2.06 [A] KOG0332 ATP-dependent RNA helicase
Length = 503
Score = 106 bits (265), Expect = 9e-23
Identities = 103/411 (25%), Positives = 187/411 (45%), Gaps = 59/411 (14%)
Query: 172 VKQFDSYEGELDARLLKNITSNFSSETFPIQTILFDKVLPLLNSSFKANRKLFTRRVGDI 231
VK F+ E EL LLK I S + IQ +K LPLL S+ N +
Sbjct: 113 VKSFE--ELELKPELLKGIYSMKFQKPSKIQ----EKALPLLLSNPPRN----------M 156
Query: 232 LVNASTGSGKTLAYSVPLVQILRSRTVNKVRAIILVPTKILIHQVYDCLSKLSQGTSLNV 291
+ + +G+GKT A+++ ++ + + +V K +AI L P++ L Q+ D ++++ + T +
Sbjct: 157 IGQSQSGTGKTAAFALTMLSRVDA-SVPKPQAICLAPSRELARQIMDVVTEMGKYTEVKT 215
Query: 292 SMSKLENSLKEEHNKFLYNSPDILIITPGRLVDHLQMESFDLKTLKFLVLDEADRLLNQS 351
+ +K+ K I+I TPG ++D ++ D + +K VLDEAD +L+Q
Sbjct: 216 AFG-----IKDSVPKGAKIDAQIVIGTPGTVMDLMKRRQLDARDIKVFVLDEADNMLDQQ 270
Query: 352 FQNWNQVLFHHLTNDKQDKRPGNVIKMVFSATLTTNAEKLYNLYLHNPKIFLTDSVKLYS 411
+ HL P N ++FSAT + EK + N + +L
Sbjct: 271 GLGDQSMRIKHLL-------PRNTQIVLFSATFSERVEKYAERFAPNANEIRLKTEEL-- 321
Query: 412 IPKKLQELNVNIPTAKSLFKPLLLLRIIHDIKSSASRNAKILVFVKSNEASIRLESLLHA 471
+ +++L ++ + + + L+ L + I S ++F K + + E +
Sbjct: 322 SVEGIKQLYMDCQSEEHKYNVLVELYGLLTIGQS-------IIFCKKKDTA---EEIARR 371
Query: 472 MLGSGIIEDEYNMFLXXXXXXXXXXXXRKLIQEFASSEQKKSVLISTDIMARGIDINEIT 531
M G + ++ F K VL++T+++ARGID++++
Sbjct: 372 MTADG-------HTVACLTGNLEGAQRDAIMDSFRVGTSK--VLVTTNVIARGIDVSQVN 422
Query: 532 HVINYDLPISS------QQYVHRCGRTARANTEGIAINLLVGKGEQKFWSQ 576
V+NYD+P+ Q Y+HR GRT R G++IN + ++K W +
Sbjct: 423 LVVNYDMPLDQAGRPDPQTYLHRIGRTGRFGRVGVSINFV---HDKKSWEE 470
>CE26887 [A] KOG0333 U5 snRNP-like RNA helicase subunit
Length = 730
Score = 106 bits (265), Expect = 9e-23
Identities = 96/370 (25%), Positives = 170/370 (45%), Gaps = 66/370 (17%)
Query: 230 DILVNASTGSGKTLAYSVPLVQILRSRTVNKVR--------AIILVPTKILIHQVYDCLS 281
D++ A TGSGKT A+ +PL+ + S + + AII+ PT+ L Q+ + +
Sbjct: 340 DVIGVAETGSGKTAAFLLPLLVWITSLPKMERQEHRDLGPYAIIMAPTRELAQQIEEETN 399
Query: 282 KLSQGTSLNVSMSKLENSLKEEHNKFLYNSPDILIITPGRLVDHLQMESFDLKTLKFLVL 341
K + + ++S + + +E+ L +++I TPGRL+D L+ L +++L
Sbjct: 400 KFGKLLGIK-TVSVIGGASREDQGMKLRMGVEVVIATPGRLLDVLENRYLLLNQCTYVIL 458
Query: 342 DEADRLLNQSFQNWNQVLFHHL--TNDKQD---------------KRPGNVIKMVFSATL 384
DEADR+L+ F+ Q + ++ TN K+D R ++F+AT+
Sbjct: 459 DEADRMLDMGFEPDVQKVLEYMPDTNMKKDTDEFDNEEALMKGFSTREKYRQTVMFTATM 518
Query: 385 TTNAEKLYNLYLHNPKIFLTDSV---------KLYSIPKKLQELNVNIPTAKSLFKPLLL 435
++ E+L YL P + S +Y +P+ + + + +S F+P ++
Sbjct: 519 SSAIERLARQYLRRPAVVHIGSAGKPTERVEQVVYMVPEDRKRKKL-VEVLESQFQPPII 577
Query: 436 LRIIHDIKSSASRNAKILVFVKSNEASIRLESLLHAMLGSGIIEDEYNMFLXXXXXXXXX 495
+ + + K A +K L + ++LH G G + EY +
Sbjct: 578 IFV--NQKKGADMLSKGLTKLGFK------PTVLHG--GKGQDQREYAL----------- 616
Query: 496 XXXRKLIQEFASSEQKKSVLISTDIMARGIDINEITHVINYDLPISSQQYVHRCGRTARA 555
A E +L++TD+ RGID+ +++ V+NYD+ S + Y HR GRT RA
Sbjct: 617 ---------QALKEGTSDILVATDVAGRGIDVKDVSLVLNYDMAKSIEDYTHRIGRTGRA 667
Query: 556 NTEGIAINLL 565
G AI L
Sbjct: 668 GKHGKAITFL 677
>CE24878 [A] KOG0333 U5 snRNP-like RNA helicase subunit
Length = 769
Score = 106 bits (265), Expect = 9e-23
Identities = 96/370 (25%), Positives = 170/370 (45%), Gaps = 66/370 (17%)
Query: 230 DILVNASTGSGKTLAYSVPLVQILRSRTVNKVR--------AIILVPTKILIHQVYDCLS 281
D++ A TGSGKT A+ +PL+ + S + + AII+ PT+ L Q+ + +
Sbjct: 340 DVIGVAETGSGKTAAFLLPLLVWITSLPKMERQEHRDLGPYAIIMAPTRELAQQIEEETN 399
Query: 282 KLSQGTSLNVSMSKLENSLKEEHNKFLYNSPDILIITPGRLVDHLQMESFDLKTLKFLVL 341
K + + ++S + + +E+ L +++I TPGRL+D L+ L +++L
Sbjct: 400 KFGKLLGIK-TVSVIGGASREDQGMKLRMGVEVVIATPGRLLDVLENRYLLLNQCTYVIL 458
Query: 342 DEADRLLNQSFQNWNQVLFHHL--TNDKQD---------------KRPGNVIKMVFSATL 384
DEADR+L+ F+ Q + ++ TN K+D R ++F+AT+
Sbjct: 459 DEADRMLDMGFEPDVQKVLEYMPDTNMKKDTDEFDNEEALMKGFSTREKYRQTVMFTATM 518
Query: 385 TTNAEKLYNLYLHNPKIFLTDSV---------KLYSIPKKLQELNVNIPTAKSLFKPLLL 435
++ E+L YL P + S +Y +P+ + + + +S F+P ++
Sbjct: 519 SSAIERLARQYLRRPAVVHIGSAGKPTERVEQVVYMVPEDRKRKKL-VEVLESQFQPPII 577
Query: 436 LRIIHDIKSSASRNAKILVFVKSNEASIRLESLLHAMLGSGIIEDEYNMFLXXXXXXXXX 495
+ + + K A +K L + ++LH G G + EY +
Sbjct: 578 IFV--NQKKGADMLSKGLTKLGFK------PTVLHG--GKGQDQREYAL----------- 616
Query: 496 XXXRKLIQEFASSEQKKSVLISTDIMARGIDINEITHVINYDLPISSQQYVHRCGRTARA 555
A E +L++TD+ RGID+ +++ V+NYD+ S + Y HR GRT RA
Sbjct: 617 ---------QALKEGTSDILVATDVAGRGIDVKDVSLVLNYDMAKSIEDYTHRIGRTGRA 667
Query: 556 NTEGIAINLL 565
G AI L
Sbjct: 668 GKHGKAITFL 677
>7299019 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 involved in
rRNA maturation DEAD-box superfamily
Length = 399
Score = 106 bits (265), Expect = 9e-23
Identities = 97/375 (25%), Positives = 176/375 (46%), Gaps = 56/375 (14%)
Query: 230 DILVNASTGSGKTLAYSVPLVQILRSRTVNKVRAIILVPTKILIHQVYDCLSKLSQGTSL 289
D++ A +G+GKT +S+ ++Q L + T+ + + + L PT+ L Q+ + L ++
Sbjct: 65 DVIAQAQSGTGKTATFSISILQSLDT-TLRETQVLCLSPTRELAVQIQKVILALGDMMNV 123
Query: 290 NVSMSKLENSLKEEHNKFLYNSPDILIITPGRLVDHLQMESFDLKTLKFLVLDEADRLLN 349
+ +L E+ K Y I+ TPGR+ D ++ + +K LVLDEAD +LN
Sbjct: 124 QCHVCIGGTNLGEDIRKLDYGQ-HIVSGTPGRVFDMIKRRVLRTRAIKMLVLDEADEMLN 182
Query: 350 QSFQNWNQVLFHHLTNDKQDKRPGNVIKMVFSATLTTNAEKLYNLYLHNPKIFLT----- 404
+ F+ ++ +L P ++ SATL ++ + ++ +P L
Sbjct: 183 KGFKEQIYDVYRYL--------PPATQVVLISATLPHEILEMTSKFMTDPIRILVKRDEL 234
Query: 405 --DSVKLYSIPKKLQELNVNIPTAKSLFKPLLLLRIIHDIKSSASRNAKILVFVKSNEAS 462
+ +K + + + +E + T L+ L + + + I + R L K EA+
Sbjct: 235 TLEGIKQFFVAVEREEWKFD--TLCDLYDTLTITQAV--IFCNTKRKVDWLT-EKMREAN 289
Query: 463 IRLESLLHAMLGSGIIEDEYNMFLXXXXXXXXXXXXRKLIQEFASSEQKKSVLISTDIMA 522
+ S+ M DE +++EF + + + VLI+TD+ A
Sbjct: 290 FTVSSMHGDMPQKE--RDE-------------------IMKEFRAGQSR--VLITTDVWA 326
Query: 523 RGIDINEITHVINYDLPISSQQYVHRCGRTARANTEGIAINLLVGKGEQKFWSQHIDTDL 582
RGID+ +++ VINYDLP + + Y+HR GR+ R +G+AIN + + D +
Sbjct: 327 RGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFV----------KSDDIRI 376
Query: 583 SRDIDGYQPSAYLDE 597
RDI+ Y S +DE
Sbjct: 377 LRDIEQYY-STQIDE 390
>7291960_2 [A] KOG0337 ATP-dependent RNA helicase
Length = 883
Score = 106 bits (265), Expect = 9e-23
Identities = 111/427 (25%), Positives = 178/427 (40%), Gaps = 53/427 (12%)
Query: 182 LDARLLKNITSNFSSETFPIQTILFDKVLPLLNSSFKANRKLFTRRVGDILVNASTGSGK 241
L L+K IT PIQ K +PL+ D++ A TGSGK
Sbjct: 102 LGFELIKGITKRGYKVPTPIQR----KTIPLILEG------------RDVVAMAKTGSGK 145
Query: 242 TLAYSVPLVQILRSRTVNK-VRAIILVPTKILIHQVYDCLSKLSQGTSLNVSMSKLENSL 300
T + +PL + L+ R K RA+IL PT+ L Q Y + +L + L S+ L
Sbjct: 146 TACFLIPLFEKLQRREPTKGARALILSPTRELAVQTYKFIKELGRFMELK-SILVLGGDS 204
Query: 301 KEEHNKFLYNSPDILIITPGRLVDHLQME-SFDLKTLKFLVLDEADRLLNQSFQNWNQVL 359
+ ++ PD+++ TPGR + HL +E L +++++V DEADRL F
Sbjct: 205 MDSQFSAIHTCPDVIVATPGRFL-HLCVEMDLKLNSIEYVVFDEADRLFEMGFGEQLNET 263
Query: 360 FHHLTNDKQDKRPGNVIKMVFSATLTTNAEKLYNLYLHNPKIFLTDSVKLYSIPKKLQEL 419
H L + +Q ++FSATL + L++P + D +P L
Sbjct: 264 LHRLPSSRQ--------TVMFSATLPKLLVEFARAGLNDPVLIRLDVES--KLPDALALK 313
Query: 420 NVNIPTAKSLFKPLLLLRIIHDIKSSASRNAKILVFVKSNEASIRLESLLHAMLGSGIIE 479
+ ++LL+ + ++S + +VF + +E + + + +GI
Sbjct: 314 FLYCRPDDRYTALVVLLKYVIPVQS------QTVVFAGTQH---HVELISYILTEAGI-- 362
Query: 480 DEYNMFLXXXXXXXXXXXXRKLIQEFASSEQKKSVLISTDIMARGIDINEITHVINYDLP 539
+ I +K SVLI TD+ ARGIDI + V+N P
Sbjct: 363 -------SNASVYSSLDPAARKINTAKFVNKKVSVLIVTDVAARGIDIPSLDFVVNLHFP 415
Query: 540 ISSQQYVHRCGRTARANTEGIAINLLVGKGEQKFWSQHIDTDLSRDID-----GYQPSAY 594
+ +VHR GR ARA G A +++ H+ + +I G P
Sbjct: 416 GKPKLFVHRVGRCARAGRTGTAYSIVSTDDTAHLLDLHLFLNRPFNIHDSSALGTIPQDL 475
Query: 595 LDEEKLS 601
L+EE L+
Sbjct: 476 LEEEHLT 482
>CE11402 [A] KOG0334 RNA helicase
Length = 995
Score = 106 bits (264), Expect = 1e-22
Identities = 99/350 (28%), Positives = 158/350 (44%), Gaps = 50/350 (14%)
Query: 230 DILVNASTGSGKTLAYSVPLV-QILR--SRTVNKVR------AIILVPTKILIHQVYDCL 280
D+L A T +GKT A+ +P++ +ILR T NK R A+IL PT+ L Q+++ L
Sbjct: 420 DVLGQAETSAGKTAAFGLPIIDKILRMDEETRNKARQDDGPLALILAPTRELAAQIHEAL 479
Query: 281 SKLSQGTSLNVSMSKLENSLKEEHNKFLYNSPDILIITPGRLVDHLQMESFDLKTLKFLV 340
Q T + V +S ++ N+ + N DILI T GR++D L L+FLV
Sbjct: 480 RTYCQNTDIIVLLSYGQSDRARSLNE-IRNGCDILIGTCGRIMDFTVKSHISLLHLRFLV 538
Query: 341 LDEADRLLNQSFQNWNQVLFHHLTNDKQDKRPGNVIKMVFSATLTTNAEKLYNLYLHNPK 400
DEADRLL Q+ + HL G +IK + + N
Sbjct: 539 FDEADRLL----QDMKKDPLGHL---------GAIIKDAGFMESAATRQTIMTSATFNAS 585
Query: 401 IFLTDSVKLYSIPKKLQELNVNIPTAKSLFKPLLLLRIIHDIKSSASRNAKILVFVKSNE 460
+ + + +P Q+ + I A + L + K A +NAK+ +K N
Sbjct: 586 VMTVANELMKRLPG--QDEMIKIVLANGRLSKRVNLEFF-ECKGLAEKNAKLREILKQNV 642
Query: 461 ASIRLESLLH-----------AMLGSGIIEDEYNMFLXXXXXXXXXXXXRKLIQEFASSE 509
L++++ A L SG M KLI +F S+
Sbjct: 643 NGKTLKTIIFVQKKDQCDACAAKLTSG------GMLAQTLHGDRSQDMREKLINDFKSN- 695
Query: 510 QKKSVLISTDIMARGIDINEITHVINYDLP-----ISSQQYVHRCGRTAR 554
+ ++L++TD+++RGID++++ VIN+DLP + ++HR GRT R
Sbjct: 696 -RVNLLVTTDLLSRGIDVSDLDRVINFDLPDGDPDQGADTFIHRAGRTGR 744
>At3g22330 [A] KOG0331 ATP-dependent RNA helicase
Length = 620
Score = 106 bits (264), Expect = 1e-22
Identities = 91/395 (23%), Positives = 171/395 (43%), Gaps = 70/395 (17%)
Query: 182 LDARLLKNITSNFSSETFPIQTILFDKVLPLLNSSFKANRKLFTRRVGDILVNASTGSGK 241
+ ++K ++S + FPIQ + + + D++ A TG+GK
Sbjct: 111 ISPEIVKALSSKGIEKLFPIQKAVLEPAM----------------EGRDMIGRARTGTGK 154
Query: 242 TLAYSVPLVQILRSRTVNKVRA-----IILVPTKILIHQVYDCLSK---------LSQGT 287
TLA+ +P++ + R ++L PT+ L QV + L GT
Sbjct: 155 TLAFGIPIIDKIIKYNAKHGRGRNPLCLVLAPTRELARQVEKEFRESAPSLDTICLYGGT 214
Query: 288 SLNVSMSKLENSLKEEHNKFLYNSPDILIITPGRLVDHLQMESFDLKTLKFLVLDEADRL 347
+ M +L+ + D+ + TPGR++D ++ + +L ++F+VLDEAD++
Sbjct: 215 PIGQQMRQLDYGV------------DVAVGTPGRVIDLMKRGALNLSEVQFVVLDEADQM 262
Query: 348 LNQSFQNWNQVLFHHLTNDKQDKRPGNVIKMVFSATLTTNAEKLYNLYLHNPKIFLTDSV 407
L F +++ L +Q M+FSAT+ + L YL+NP +
Sbjct: 263 LQVGFAEDVEIILEKLPEKRQ--------SMMFSATMPSWIRSLTKKYLNNP-------L 307
Query: 408 KLYSIPKKLQELNVNIPTAKSLFKPLLLLRIIHDIKSSASRNAKILVFVKSNEASIRLES 467
+ + Q+L I T + II + + ++ K +VF ++ + RL
Sbjct: 308 TVDLVGDSDQKLADGITTYSIIADSYGRASIIGPLVTEHAKGGKCIVFTQTKRDADRLSY 367
Query: 468 LLHAMLGSGIIEDEYNMFLXXXXXXXXXXXXRKLIQEFASSEQKKSVLISTDIMARGIDI 527
L + + + + + F ++L++TD+ ARG+D+
Sbjct: 368 ALARSFKCEALHGDISQ-----------SQRERTLAGFRDGH--FNILVATDVAARGLDV 414
Query: 528 NEITHVINYDLPISSQQYVHRCGRTARANTEGIAI 562
+ +I+Y+LP +++ +VHR GRT RA +G AI
Sbjct: 415 PNVDLIIHYELPNNTETFVHRTGRTGRAGKKGSAI 449
>CE25231 [A] KOG0343 RNA Helicase
Length = 732
Score = 105 bits (262), Expect = 2e-22
Identities = 93/354 (26%), Positives = 165/354 (46%), Gaps = 47/354 (13%)
Query: 230 DILVNASTGSGKTLAYSVPLVQILRSRTVNK---VRAIILVPTKILIHQVYDCLSKLSQG 286
D++ A TGSGKTLA +P+++ L + + A+I+ PT+ L Q + ++ +
Sbjct: 115 DVVGAAKTGSGKTLALVIPVLEALWRAKWSPDYGLGALIISPTRELALQTFSTINAVGAH 174
Query: 287 TSLNVSMSKLENSLKEEHNKFLYNSPDILIITPGRLVDHLQMES-FDLKTLKFLVLDEAD 345
+ + + + E N+ + +I++ TPGRL+ H+ + +L+ LVLDEAD
Sbjct: 175 HGFSCGLVIGGSDVAFERNRI--SGINIIVCTPGRLLQHMDENAQMSCDSLQVLVLDEAD 232
Query: 346 RLLNQSFQNWNQVLFHHLTNDKQDKRPGNVIKMVFSATLTTNAEKLYNLYLHNPKIFLTD 405
R+L+ F + ++L ++Q ++FSAT T N + L + ++P +F++
Sbjct: 233 RMLDMGFSKQLNSIINNLPAERQT--------LLFSATQTRNVKDLCRVCTNDP-VFVS- 282
Query: 406 SVKLYSIPKKLQELNVNIPTAKSLFKPLLLLRIIHDIKS-----SASRNAKILVFVKS-N 459
N + T +L + +++ H I + A R K LVFV S
Sbjct: 283 -----------VHENASAATPDNLKQSYVIVEEEHKINALWSFIEAHRKKKSLVFVSSCK 331
Query: 460 EASIRLESLLHAMLGSGIIEDEYNMFLXXXXXXXXXXXXRKLIQEFAS-SEQKKSVLIST 518
+A E+ G ++ +K I+ F E K +VLI+T
Sbjct: 332 QARFLTEAFSQLRPGLPVM------------GLWGTMNQKKRIETFTKFDESKAAVLIAT 379
Query: 519 DIMARGIDINEITHVINYDLPISSQQYVHRCGRTARANTEGIAINLLVGKGEQK 572
D+ +RG+D I VI D P Y+HR GR+AR + G ++ L+V +++
Sbjct: 380 DVASRGLDFEHIDWVIQVDCPAQIDDYIHRVGRSARMDDSGNSL-LMVSPSQEE 432
>At1g54270 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 412
Score = 105 bits (262), Expect = 2e-22
Identities = 85/341 (24%), Positives = 164/341 (47%), Gaps = 41/341 (12%)
Query: 230 DILVNASTGSGKTLAYSVPLVQILRSRTVNKVRAIILVPTKILIHQVYDCLSKLSQGTSL 289
D++ A +G+GKT + ++Q L + + +A++L PT+ L Q+ + L +
Sbjct: 78 DVIQQAQSGTGKTATFCSGVLQQL-DYALLQCQALVLAPTRELAQQIEKVMRALGDYQGV 136
Query: 290 NVSMSKLENSLKEEHNKFLYNSPDILIITPGRLVDHLQMESFDLKTLKFLVLDEADRLLN 349
V S++E+ + L +++ TPGR+ D L+ +S +K VLDEAD +L+
Sbjct: 137 KVHACVGGTSVREDQ-RILQAGVHVVVGTPGRVFDMLRRQSLRPDCIKMFVLDEADEMLS 195
Query: 350 QSFQNWNQVLFHHLTNDKQDKRPGNVIKMVFSATLTTNAEKLYNLYLHNPKIFLT--DSV 407
+ F++ +F L P + VFSAT+ A ++ ++ P L D +
Sbjct: 196 RGFKDQIYDIFQLL--------PPKIQVGVFSATMPPEALEITRKFMSKPVRILVKRDEL 247
Query: 408 KLYSIPK---KLQELNVNIPTAKSLFKPLLLLRIIHDIKSSASRNAKILVFVKSNEASIR 464
L I + +++ + + T L++ L + + + + + K + + +
Sbjct: 248 TLEGIKQFYVNVEKEDWKLETLCDLYETLAITQSVIFVNTRR----------KVDWLTDK 297
Query: 465 LESLLHAMLGSGIIEDEYNMFLXXXXXXXXXXXXRKLIQEFASSEQKKSVLISTDIMARG 524
+ S H + + D+ + +++EF S + VLI+TD++ARG
Sbjct: 298 MRSRDHTVSATHGDMDQNTRDI--------------IMREFRSGSSR--VLITTDLLARG 341
Query: 525 IDINEITHVINYDLPISSQQYVHRCGRTARANTEGIAINLL 565
ID+ +++ VIN+DLP + Y+HR GR+ R +G+AIN +
Sbjct: 342 IDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFV 382
>7296165 [A] KOG0330 ATP-dependent RNA helicase
Length = 536
Score = 105 bits (262), Expect = 2e-22
Identities = 87/347 (25%), Positives = 154/347 (44%), Gaps = 27/347 (7%)
Query: 232 LVNASTGSGKTLAYSVPLV------QILRSRTVNKVRAIILVPTKILIHQVYDCLSKLSQ 285
L+ A TG GKT+ Y +P+V +++ R +N R +IL P + L Q+ KL+Q
Sbjct: 150 LIAAETGCGKTITYLLPIVDKLLQKEVVTERKLNTPRVLILTPGRELATQIAGVTEKLTQ 209
Query: 286 GTSLNVSMSKLENSLKEEHNKFLYNSPDILIITPGRLVDHLQMESFDLKTLKFLVLDEAD 345
GT+L V S L + K+ + DIL+ T G L + + ++ ++ LVLDEAD
Sbjct: 210 GTNLKVQ-SLLGGNTKQLMMNPQFEEVDILVATLGALSKLVTTGIYRMEQVRHLVLDEAD 268
Query: 346 RLLNQSFQNWNQVLFHHLTNDKQDKRPGNVIKMVFSATLTTNAEKLYNLYLHNPKIFLTD 405
LL+ +F + K ++ SAT+ TN ++ + + I
Sbjct: 269 TLLDDTFTDKLSYFLRRFPFHLVQKEDAGTQMILASATMPTNTREILHKVIDVDTIREVV 328
Query: 406 SVKLYSIPKKLQELNVNIPTAKSLFKPLLLLRIIHDIKSSASRNAKILVFVKSNEASIRL 465
S L+ + + + + + A +P LL ++ K ++ ++VF + S +
Sbjct: 329 SPHLHRLMSHVTQKFLRLSKAD---RPATLLSLV---KHDLAKRRPLIVFSNKSTTSDFV 382
Query: 466 ESLLHAMLGSGIIEDEYNMFLXXXXXXXXXXXXRKLIQEFASSEQKKSVLISTDIMARGI 525
L+ G + +M + ++F + VL +TD+ +RG+
Sbjct: 383 SIFLNNS-GVNCLNLNGDMLMKIRLGR---------FEQFQNGHC--DVLSTTDVGSRGL 430
Query: 526 DINEITHVINYDLPISSQQYVHRCGRTARANT--EGIAINLLVGKGE 570
D HV+N+D P+ Y+HRCGR R + + NL+ + E
Sbjct: 431 DTTRARHVVNFDFPLHVSDYIHRCGRIGRVGNMDKALVTNLISSRRE 477
>CE06239 [A] KOG0344 ATP-dependent RNA helicase
Length = 581
Score = 104 bits (260), Expect = 4e-22
Identities = 109/404 (26%), Positives = 179/404 (43%), Gaps = 77/404 (19%)
Query: 179 EGELDARLLKNITSNFSSETFPIQTILFDKVLPLLNSSFKANRKLFTRRVGDILVNASTG 238
+ + LL ++ N + PIQ + + F R+ ++L +A TG
Sbjct: 130 DSSMSPSLLNRLSENSIRQPSPIQ---------MQSIPFMTERR-------NVLASAPTG 173
Query: 239 SGKTLAYSVPLV-QILR--------SRTVNKVRAIILVPTKILIHQVYDCLSKLSQGTSL 289
SGKTLA+++P++ +IL S +K+ A++L PT+ L Q Y K TS+
Sbjct: 174 SGKTLAFALPVIDEILELKQRADYSSSNSSKLLAVVLEPTRELAAQTYTEFLKYCANTSI 233
Query: 290 NVSMSKLENSLKEEHNKFLYNSPDILIITPGRLVDHLQMESFDLKTLKFLVLDEADRLL- 348
+ + N EE + DIL+ TP R+V HL + D +L++LV+DE+DRL
Sbjct: 234 SAA-----NFSGEETD---IQHADILVSTPNRIVFHL--DKIDTSSLRWLVVDESDRLFE 283
Query: 349 ---NQSFQNWNQVLFHHLTNDKQDKRPGNVIKMVFSATLTTNAEKLYNLYLHNPKIFLTD 405
Q NQ+ + D + R FSAT + EK + D
Sbjct: 284 VVEGQDKCFRNQLAAIYKACDAKCTRVA-----FFSATFSHEVEKWCKENI--------D 330
Query: 406 SVKLYSIPKKLQELNVNIPTAKSLFKPLLLLRIIHDIKSSASRN-------AKILVFVKS 458
+ + + ++ ++ + K L D K A RN LVFV+S
Sbjct: 331 EIGMVCVGER--------NSSNTSVKQKLTYCGTEDGKKIAIRNLLRTSFKPPALVFVQS 382
Query: 459 NEASIRLESLLHAMLGSGIIEDEYNMFLXXXXXXXXXXXXRKLIQEFASSEQKKSVLIST 518
+ +++L LL A+ + N+ + + ++ F E VL+ T
Sbjct: 383 KDRAVQLVKLLSAI--------DSNLKVDSINSGKSDKERDETMERFRRGE--IWVLVCT 432
Query: 519 DIMARGIDINEITHVINYDLPISSQQYVHRCGRTARANTEGIAI 562
+++ RG+D++++ VINYDLP S Y+HR GRT RA G A+
Sbjct: 433 ELLGRGLDLSDVGLVINYDLPTSIVSYIHRVGRTGRAGKSGHAV 476
>At1g51380 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 involved in
rRNA maturation DEAD-box superfamily
Length = 392
Score = 104 bits (260), Expect = 4e-22
Identities = 89/341 (26%), Positives = 158/341 (46%), Gaps = 41/341 (12%)
Query: 230 DILVNASTGSGKTLAYSVPLVQILRSRTVNKVRAIILVPTKILIHQVYDCLSKLSQGTSL 289
D++ A +G+GKT ++ + QI+ + KV+ ++L P++ L Q + + T++
Sbjct: 61 DVIAQAQSGTGKTSMIAISVCQIVNISS-RKVQVLVLSPSRELASQTEKTIQAIGAHTNI 119
Query: 290 NVSMSKLENSLKEEHNKFLYNSPDILIITPGRLVDHLQMESFDLKTLKFLVLDEADRLLN 349
S+ E+ K L + TPGR+ D ++ S K +K LVLDE+D +L+
Sbjct: 120 QAHACIGGKSIGEDIKK-LERGVHAVSGTPGRVYDMIKRGSLQTKAVKLLVLDESDEMLS 178
Query: 350 QSFQNWNQVLFHHLTNDKQDKRPGNVIKMVFSATLTTNAEKLYNLYLHNPKIFLTDSVKL 409
+ ++ ++ L +D Q + SATL L + F+TD V++
Sbjct: 179 KGLKDQIYDVYRALPHDIQ--------VCLISATLPQEI-------LEMTEKFMTDPVRI 223
Query: 410 YSIPKKL-----QELNVNIPTAKSLFKPLLLLRIIHDIKSSASRNAKILVFVKSNEASIR 464
P +L ++ V++ + F L D+ + N I +F + + +
Sbjct: 224 LVKPDELTLEGIKQYYVDVDKEEWKFDTLC------DLYGRLTINQAI-IFCNTRQ---K 273
Query: 465 LESLLHAMLGSGIIEDEYNMFLXXXXXXXXXXXXRKLIQEFASSEQKKSVLISTDIMARG 524
++ L M S N + ++ +F S K VLI++D+ ARG
Sbjct: 274 VDWLTEKMRSS-------NFIVSSMHGDKRQKERDDIMNQFRSF--KSRVLIASDVWARG 324
Query: 525 IDINEITHVINYDLPISSQQYVHRCGRTARANTEGIAINLL 565
ID+ ++HVINYD+P + + Y+HR GR R EG+AIN +
Sbjct: 325 IDVQTVSHVINYDIPNNPELYIHRIGRAGRFGREGVAINFV 365
>At1g20920 [A] KOG0334 RNA helicase
Length = 1166
Score = 104 bits (260), Expect = 4e-22
Identities = 96/391 (24%), Positives = 177/391 (44%), Gaps = 53/391 (13%)
Query: 182 LDARLLKNITSNFSSETFPIQTILFDKVLPLLNSSFKANRKLFTRRVGDILVNASTGSGK 241
L +++L + + PIQT + LP++ S D + A TGSGK
Sbjct: 536 LTSKILDTMKKLNYEKPMPIQT----QALPIIMSG------------RDCIGVAKTGSGK 579
Query: 242 TLAYSVPLVQILRSRTVNKVR----AIILVPTKILIHQVYDCLSKLSQGTSLNVSMSKLE 297
TL + +P+++ ++ + + +++ PT+ L+ Q++ + K S+ +
Sbjct: 580 TLGFVLPMLRHIKDQPPVEAGDGPIGLVMAPTRELVQQIHSDIRKFSKPLGIRCVPVYGG 639
Query: 298 NSLKEEHNKFLYNSPDILIITPGRLVDHLQMES---FDLKTLKFLVLDEADRLLNQSFQN 354
+ + ++ ++ L +I++ TPGR++D L S +L+ + FLV+DEADR+ + F+
Sbjct: 640 SGVAQQISE-LKRGTEIVVCTPGRMIDILCTSSGKITNLRRVTFLVMDEADRMFDMGFEP 698
Query: 355 WNQVLFHHLTNDKQDKRPGNVIKMVFSATLTTNAEKLYNLYLHNPKIFLTDSVKLYSIPK 414
+ ++ ++Q ++FSAT E L L+ P + + K
Sbjct: 699 QITRIIQNIRPERQ--------TVLFSATFPRQVETLARKVLNKPVEIQVGGRSV--VNK 748
Query: 415 KLQELNVNIPTAKSLFKPLLLLRIIHDIKSSASRNAKILVFVKSNEASIRLESLLHAMLG 474
+ +L V + F LL ++ S KILVFV+S E + ++L M+
Sbjct: 749 DITQL-VEVRPESDRFLRLL------ELLGEWSEKGKILVFVQSQE---KCDALYRDMIK 798
Query: 475 SGIIEDEYNMFLXXXXXXXXXXXXRKLIQEFASSEQKKSVLISTDIMARGIDINEITHVI 534
S + I +F ++LI+T + ARG+D+ E+ V+
Sbjct: 799 S-------SYPCLSLHGGKDQTDRESTISDF--KNDVCNLLIATSVAARGLDVKELELVV 849
Query: 535 NYDLPISSQQYVHRCGRTARANTEGIAINLL 565
N+D P + YVHR GRT RA +G A+ +
Sbjct: 850 NFDAPNHYEDYVHRVGRTGRAGRKGCAVTFI 880
>Hs8922976 [A] KOG0330 ATP-dependent RNA helicase
Length = 540
Score = 104 bits (259), Expect = 5e-22
Identities = 94/342 (27%), Positives = 149/342 (43%), Gaps = 29/342 (8%)
Query: 231 ILVNASTGSGKTLAYSVPLVQ------ILRSRTVNKVRAIILVPTKILIHQVYDCLSKLS 284
++ A TGSGKTL+Y +PL+Q L S + R ++LVP++ L QV L
Sbjct: 168 VVCAAETGSGKTLSYLLPLLQRLLGQPSLDSLPIPAPRGLVLVPSRELAQQVRAVAQPL- 226
Query: 285 QGTSLNVSMSKLENSLKEEHNKFLYN---SPDILIITPGRLVDHLQMESFDLKTLKFLVL 341
G SL + + LE + + S D+L+ TPG L L+ L+ L FLVL
Sbjct: 227 -GRSLGLLVRDLEGGHGMRRIRLQLSRQPSADVLVATPGALWKALKSRLISLEQLSFLVL 285
Query: 342 DEADRLLNQSFQNWNQVLFH--HLTN---DKQDKRPGNVIKMVFSATLTTNAEKLYNLYL 396
DEAD LL++SF + H+ D +D ++ AT +L N
Sbjct: 286 DEADTLLDESFLELVDYILEKSHIAEGPADLEDPFNPKAQLVLVGATFPEGVGQLLNKVA 345
Query: 397 HNPKIFLTDSVKLYSIPKKLQELNVNIPTAKSLFKPLLLLRIIHDIKSSASRNAKILVFV 456
+ S KL+ I +++ + + A + + + +L+ D + +LVF
Sbjct: 346 SPDAVTTITSSKLHCIMPHVKQTFLRLKGADKVAELVHILKH-RDRAERTGPSGTVLVFC 404
Query: 457 KSNEASIRLESLLHAMLGSGIIEDEYNMFLXXXXXXXXXXXXRKLIQEFASSEQKKSVLI 516
S+ L G I D++ + + Q F S + +L+
Sbjct: 405 NSSSTVNWL----------GYILDDHKIQHLRLQGQMPALMRVGIFQSFQKSS--RDILL 452
Query: 517 STDIMARGIDINEITHVINYDLPISSQQYVHRCGRTARANTE 558
TDI +RG+D + V+NYD P + Q Y+HR GR R +E
Sbjct: 453 CTDIASRGLDSTGVELVVNYDFPPTLQDYIHRAGRVGRVGSE 494
>CE28369 [A] KOG0335 ATP-dependent RNA helicase
Length = 644
Score = 104 bits (259), Expect = 5e-22
Identities = 97/356 (27%), Positives = 163/356 (45%), Gaps = 45/356 (12%)
Query: 230 DILVNASTGSGKTLAYSVPLVQILRSRTVNKVR--------------AIILVPTKILIHQ 275
D++ A TGSGKT A+ +P++Q + + + V+ A++L PT+ L Q
Sbjct: 162 DLMSCAQTGSGKTAAFLLPIIQHILAGGPDMVKPPAFTNGRRTYYPCALVLSPTRELAIQ 221
Query: 276 VYDCLSKLSQGTSLNVSMSKLENSLKEEHNKFLYNSPDILIITPGRLVDHLQMESFDLKT 335
++ +K S +++ ++ + L ILI TPGRL+D ++ L
Sbjct: 222 IHKEATKFSYKSNIQTAILYGGRENYRDQVNRLRAGTHILIATPGRLIDIIEQGFIGLAG 281
Query: 336 LKFLVLDEADRLLNQSFQNWNQVLFHHLTNDKQDKRPGNVIKMVFSATLTTNAEKLYNLY 395
++LVLDEADR+L+ F+ + + K + +FSAT + L +
Sbjct: 282 CRYLVLDEADRMLDMGFEPQIRKIVGQGMPPKTARTTA-----MFSATFPKEIQVLAKDF 336
Query: 396 LHNPKIFLTDSVKLYSIPKKLQE--LNVNIPTAKSLFKPLLLLRIIHDIKSSASRNAKIL 453
L + IFL ++ S + +++ L VN +S +L+ + S N +L
Sbjct: 337 LKDNYIFLAVG-RVGSTSENIEQRLLWVNEMEKRSNLMEILM--------NEHSENL-VL 386
Query: 454 VFVKSNEASIRLESLLH-AMLGSGIIEDEYNMFLXXXXXXXXXXXXRKLIQEFASSEQKK 512
VFV++ + L L+ + S I + + ++ F S +
Sbjct: 387 VFVETKRGANELAYFLNRQQIRSVSIHGDLKQI-----------ERERNLELFRSGQ--C 433
Query: 513 SVLISTDIMARGIDINEITHVINYDLPISSQQYVHRCGRTARANTEGIAINLLVGK 568
+L++T + ARG+DI + HVINYDLP S +YVHR GRT R GIA + K
Sbjct: 434 PILVATAVAARGLDIPNVRHVINYDLPGDSDEYVHRIGRTGRCGNLGIATSFFNDK 489
>CE24451 [A] KOG0335 ATP-dependent RNA helicase
Length = 641
Score = 104 bits (259), Expect = 5e-22
Identities = 97/356 (27%), Positives = 163/356 (45%), Gaps = 45/356 (12%)
Query: 230 DILVNASTGSGKTLAYSVPLVQILRSRTVNKVR--------------AIILVPTKILIHQ 275
D++ A TGSGKT A+ +P++Q + + + V+ A++L PT+ L Q
Sbjct: 159 DLMSCAQTGSGKTAAFLLPIIQHILAGGPDMVKPPAFTNGRRTYYPCALVLSPTRELAIQ 218
Query: 276 VYDCLSKLSQGTSLNVSMSKLENSLKEEHNKFLYNSPDILIITPGRLVDHLQMESFDLKT 335
++ +K S +++ ++ + L ILI TPGRL+D ++ L
Sbjct: 219 IHKEATKFSYKSNIQTAILYGGRENYRDQVNRLRAGTHILIATPGRLIDIIEQGFIGLAG 278
Query: 336 LKFLVLDEADRLLNQSFQNWNQVLFHHLTNDKQDKRPGNVIKMVFSATLTTNAEKLYNLY 395
++LVLDEADR+L+ F+ + + K + +FSAT + L +
Sbjct: 279 CRYLVLDEADRMLDMGFEPQIRKIVGQGMPPKTARTTA-----MFSATFPKEIQVLAKDF 333
Query: 396 LHNPKIFLTDSVKLYSIPKKLQE--LNVNIPTAKSLFKPLLLLRIIHDIKSSASRNAKIL 453
L + IFL ++ S + +++ L VN +S +L+ + S N +L
Sbjct: 334 LKDNYIFLAVG-RVGSTSENIEQRLLWVNEMEKRSNLMEILM--------NEHSENL-VL 383
Query: 454 VFVKSNEASIRLESLLH-AMLGSGIIEDEYNMFLXXXXXXXXXXXXRKLIQEFASSEQKK 512
VFV++ + L L+ + S I + + ++ F S +
Sbjct: 384 VFVETKRGANELAYFLNRQQIRSVSIHGDLKQI-----------ERERNLELFRSGQ--C 430
Query: 513 SVLISTDIMARGIDINEITHVINYDLPISSQQYVHRCGRTARANTEGIAINLLVGK 568
+L++T + ARG+DI + HVINYDLP S +YVHR GRT R GIA + K
Sbjct: 431 PILVATAVAARGLDIPNVRHVINYDLPGDSDEYVHRIGRTGRCGNLGIATSFFNDK 486
>At3g19760 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 involved in
rRNA maturation DEAD-box superfamily
Length = 408
Score = 104 bits (259), Expect = 5e-22
Identities = 89/375 (23%), Positives = 172/375 (45%), Gaps = 56/375 (14%)
Query: 230 DILVNASTGSGKTLAYSVPLVQILRSRTVNKVRAIILVPTKILIHQVYDCLSKLSQGTSL 289
D++ A +G+GKT ++ + Q++ + + +V+A+IL PT+ L Q + + ++
Sbjct: 74 DVIAQAQSGTGKTSMIALSVCQVVDTSS-REVQALILSPTRELATQTEKTIQAIGLHANI 132
Query: 290 NVSMSKLENSLKEEHNKFLYNSPDILIITPGRLVDHLQMESFDLKTLKFLVLDEADRLLN 349
NS+ E+ K L + ++ TPGR+ D ++ S + +K L+LDE+D +L+
Sbjct: 133 QAHACIGGNSVGEDIRK-LEHGVHVVSGTPGRVCDMIKRRSLRTRAIKLLILDESDEMLS 191
Query: 350 QSFQNWNQVLFHHLTNDKQDKRPGNVIKMVFSATLTTNAEKLYNLYLHNPKIFLT----- 404
+ F++ ++ +L D Q + SATL ++ + ++ P L
Sbjct: 192 RGFKDQIYDVYRYLPPDLQ--------VCLVSATLPHEILEMTSKFMTEPVKILVKRDEL 243
Query: 405 --DSVKLYSIPKKLQELNVNIPTAKSLFKPLLLLRIIHDIKSSASRNAKILVFVKSNEAS 462
+ +K + + + +E + T L+ L + + + +F +
Sbjct: 244 TLEGIKQFFVAVEKEEWKFD--TLCDLYDTLTITQAV--------------IFCNTKRKV 287
Query: 463 IRLESLLHAMLGSGIIEDEYNMFLXXXXXXXXXXXXRKLIQEFASSEQKKSVLISTDIMA 522
L + + +N + ++ EF S + + VLI+TD+ A
Sbjct: 288 DYLSEKMRS----------HNFTVSSMHGDMPQKERDAIMNEFRSGDSR--VLITTDVWA 335
Query: 523 RGIDINEITHVINYDLPISSQQYVHRCGRTARANTEGIAINLLVGKGEQKFWSQHIDTDL 582
RGID+ +++ VINYDLP + + Y+HR GR+ R +G+AIN + + D +
Sbjct: 336 RGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFV----------KSDDIKI 385
Query: 583 SRDIDGYQPSAYLDE 597
RDI+ Y S +DE
Sbjct: 386 LRDIEQYY-STQIDE 399
>SPCC63.11 [A] KOG0333 U5 snRNP-like RNA helicase subunit
Length = 662
Score = 103 bits (258), Expect = 6e-22
Identities = 89/354 (25%), Positives = 155/354 (43%), Gaps = 39/354 (11%)
Query: 230 DILVNASTGSGKTLAYSVPLV-------QILRSRTVNKVRAIILVPTKILIHQVYDCLSK 282
D++ A TGSGKT A+ +PL+ + S A++L PT+ L Q+ +K
Sbjct: 288 DLIGIAETGSGKTAAFIIPLIIAISKLPPLTESNMHLGPYAVVLAPTRELAQQIQVEGNK 347
Query: 283 LSQGTSLNVSMSKLENSLKEEHNKFLYNSPDILIITPGRLVDHLQMESFDLKTLKFLVLD 342
++ +S + EE + + I++ TPGRL+D L+ F L ++V+D
Sbjct: 348 FAEPLGFRC-VSVVGGHAFEEQSFQMSQGAHIVVATPGRLLDCLERRLFVLSQCTYVVMD 406
Query: 343 EADRLLNQSFQNWNQVLFHHLTNDKQDKRPGNVI-----------KMVFSATLTTNAEKL 391
EADR+L+ F++ + L + ++ G+++ ++FSATL L
Sbjct: 407 EADRMLDMGFEDDVNKILSSLPSSNASEKDGSILATANSSSSRRQTIMFSATLPPRVANL 466
Query: 392 YNLYLHNPKIFLTDSVKLYSIPKKLQELNVNIPTAKSLFKPLLLLRIIHDIKSSASRNAK 451
YL P + LT ++ + Q + + +K R + +I S +
Sbjct: 467 AKSYLIEP-VMLTIGNIGQAVDRVEQRVEMISDDSKK-------WRRVEEILESNRFSPP 518
Query: 452 ILVFVKSNEASIRLESLLHAMLGSGIIEDEYNMFLXXXXXXXXXXXXRKLIQEFASSEQK 511
I++FV + L+A+ + I++ + +
Sbjct: 519 IIIFVNLKRNIEAIAKQLNAI----------GWHAVTLHGSKSQEQRERAIEQLRN--KT 566
Query: 512 KSVLISTDIMARGIDINEITHVINYDLPISSQQYVHRCGRTARANTEGIAINLL 565
+L++TDI RGIDI ++ V+NY++ S + Y HR GRT RA G AI L
Sbjct: 567 ADILVATDIAGRGIDIPNVSLVLNYNMAKSIEDYTHRIGRTGRAGKSGTAITFL 620
>Hs13775232 [A] KOG0331 ATP-dependent RNA helicase
Length = 580
Score = 103 bits (258), Expect = 6e-22
Identities = 96/343 (27%), Positives = 158/343 (45%), Gaps = 76/343 (22%)
Query: 230 DILVNASTGSGKTLAYSVPLVQ--ILRSRTVNKVRAIILVPTKILIHQVYDCLSKLSQG- 286
DIL +A TGSGKT A+ +P++ + S+T + A+IL PT+ L Q+ +L G
Sbjct: 242 DILASADTGSGKTAAFLLPVIMRALFESKTPS---ALILTPTRELAIQIERQAKELMSGL 298
Query: 287 ----TSLNVSMSKLENSLKEEHNKFLYNSPDILIITPGRLVDHLQMESFDLKTLKFLVLD 342
T L V L L L ++I TPGRL+D ++ S +L +K +V+D
Sbjct: 299 PRMKTVLLVGGLPLPPQLYR-----LQQHVKVIIATPGRLLDIIKQSSVELCGVKIVVVD 353
Query: 343 EADRLLNQSFQNWNQVLFHHLTNDKQDKRPGNVIKMVFSATLTTNAEKLYNLYLHNPKIF 402
EAD +L FQ + ++ ND Q ++ SAT+ T+ E+L + LHNP
Sbjct: 354 EADTMLKMGFQQQVLDILENIPNDCQT--------ILVSATIPTSIEQLASQLLHNPVRI 405
Query: 403 LTDSVKL-----------YSIPKKLQELNVNIPTAKSLFKPLLLL----RIIHDIKSSAS 447
+T L P K ++L I K LFKP +L+ ++ D+ S A
Sbjct: 406 ITGEKNLPCANVRQIILWVEDPAKKKKL-FEILNDKKLFKPPVLVFVDCKLGADLLSEAV 464
Query: 448 RNAKIL--VFVKSNEASIRLESLLHAMLGSGIIEDEYNMFLXXXXXXXXXXXXRKLIQEF 505
+ L + + S ++ I +++L G++E +Y
Sbjct: 465 QKITGLKSISIHSEKSQIERKNIL-----KGLLEGDYE---------------------- 497
Query: 506 ASSEQKKSVLISTDIMARGIDINEITHVINYDLPISSQQYVHR 548
V++ST ++ RG+D+ + V+N+D+P S +YVH+
Sbjct: 498 --------VVVSTGVLGRGLDLISVRLVVNFDMPSSMDEYVHQ 532
>ECU09g1640 [A] KOG0326 ATP-dependent RNA helicase
Length = 489
Score = 103 bits (258), Expect = 6e-22
Identities = 90/359 (25%), Positives = 167/359 (46%), Gaps = 39/359 (10%)
Query: 230 DILVNASTGSGKTLAYSVPLVQILRSRTVNKVRAIILVPTKILIHQVYDCLSKLSQGTSL 289
++LV + G+GKT +Y VP++ ++ S ++ ++ IILVP + L Q+ + ++S+GT +
Sbjct: 147 NLLVRSKNGTGKTASYIVPMLNMINSSELS-IQGIILVPIRELALQISRNVKRMSEGTGV 205
Query: 290 NVSMSKLENSLKEEHNKFLYNSPDILIITPGRLVDHLQMESFDLKTLKFLVLDEADRLLN 349
+S + + ++ + N +++ TPGR+VD ++ L LV DEAD+LL+
Sbjct: 206 -ISAPVVGGTSMQDDIIRVSNGVHVMVGTPGRIVDLVEKRVGTLSKRVILVFDEADKLLD 264
Query: 350 QSFQNWNQVLFHHLTNDKQDKRPGNVIKMVFSATLTTNAEKLYNLYLHNPKIFLTDSVKL 409
+F L L +KQ +++SAT Y+ NP L ++
Sbjct: 265 VTFGETVTKLLDLLPREKQ--------MLLYSATFPYFVTGFIRRYMKNP---LCINLMK 313
Query: 410 YSIPKKLQELNVNI-PTAKSLFKPLLLLRIIHDIKSSASRNAKILVFVKSNEASIRLES- 467
P +++ + P+ K L LLLR+ + + K + + + L S
Sbjct: 314 ELAPVGVKQFYTYVKPSEKLLCLKSLLLRLSINQCVIFCNSIKTVELLAMKITEMGLPSY 373
Query: 468 LLHAMLGSGIIEDEYNMFLXXXXXXXXXXXXRKLIQEFASSEQKKSVLISTDIMARGIDI 527
+H+ + ++ FL + K +L++TD++ RG+D
Sbjct: 374 FIHSKMAQEDRNIVFHNFL----------------------KGKCKILVATDLITRGVDA 411
Query: 528 NEITHVINYDLPISSQQYVHRCGRTARANTEGIAINLLVGKGEQKFWSQHIDTDLSRDI 586
+VIN+D+ S + Y+HR GR R G+AI+L+ E+K I+ L ++I
Sbjct: 412 PNTNYVINFDISKSPESYLHRIGRAGRFGAPGVAISLVT--TEEKEMLMDIEAKLGKEI 468
>SPCC1795.11 [A] KOG0335 ATP-dependent RNA helicase
Length = 636
Score = 103 bits (257), Expect = 8e-22
Identities = 103/412 (25%), Positives = 184/412 (44%), Gaps = 61/412 (14%)
Query: 168 DSKMVKQFDSYEGELDARLLKNITSNFSSETFPIQTILFDKVLPLLNSSFKANRKLFTRR 227
D + V +F S L++ LL+NI + ++ P+Q +P++ S
Sbjct: 164 DIEPVNEFTS--PPLNSHLLQNIKLSGYTQPTPVQK----NSIPIVTSG----------- 206
Query: 228 VGDILVNASTGSGKTLAYSVPLVQILRSRTVNKV-----------------RAIILVPTK 270
D++ A TGSGKT + P++ + + V +IL PT+
Sbjct: 207 -RDLMACAQTGSGKTAGFLFPILSLAFDKGPAAVPVDQDAGMGYRPRKAYPTTLILAPTR 265
Query: 271 ILIHQVYDCLSKLSQGTSLNVSMSKLENSLKEEHNKFLYNSPDILIITPGRLVDHLQMES 330
L+ Q+++ K + + ++ + + + D+L TPGRLVD +
Sbjct: 266 ELVCQIHEESRKFCYRSWVRPCAVYGGADIRAQIRQ-IDQGCDLLSATPGRLVDLIDRGR 324
Query: 331 FDLKTLKFLVLDEADRLLNQSFQNWNQVLFHHLTNDKQDKRPGNVIKMVFSATLTTNAEK 390
L +KFLVLDEADR+L+ F+ + + ++R ++FSAT + +
Sbjct: 325 ISLANIKFLVLDEADRMLDMGFEPQIRHIVEGADMTSVEERQ----TLMFSATFPRDIQL 380
Query: 391 LYNLYLHNPKIFLTDSVKLYSIPKKLQELNVNIPTAKSLFKPLLLLRIIHDIKSSASRNA 450
L +L + +FL+ ++ S + + + V++ ++ K LL I+H +
Sbjct: 381 LARDFLKD-YVFLSVG-RVGSTSENITQKVVHVEDSE---KRSYLLDILHTLPPEGLT-- 433
Query: 451 KILVFVKSNEASIRLESLLHAMLGSGIIEDEYNMFLXXXXXXXXXXXXRKLIQEFASSEQ 510
L+FV++ + ++L +L S N + ++ F S
Sbjct: 434 --LIFVETKRMA---DTLTDYLLNS-------NFPATSIHGDRTQRERERALELFRSG-- 479
Query: 511 KKSVLISTDIMARGIDINEITHVINYDLPISSQQYVHRCGRTARANTEGIAI 562
+ S++++T + +RG+DI +THVINYDLP YVHR GRT RA G A+
Sbjct: 480 RTSIMVATAVASRGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRAGNTGQAV 531
>At1g71370 [A] KOG0345 ATP-dependent RNA helicase
Length = 558
Score = 103 bits (257), Expect = 8e-22
Identities = 98/348 (28%), Positives = 159/348 (45%), Gaps = 35/348 (10%)
Query: 230 DILVNASTGSGKTLAYSVPLVQILRSRT-----VNKVRAIILVPTKILIHQVYDCLSK-L 283
D++V+A+TGSGKTLA+ +P ++I+R ++V +I+ PT+ L Q++ +
Sbjct: 55 DVVVDAATGSGKTLAFLLPFIEIIRRSNSYPPKPHQVMGVIISPTRELSAQIHKVAEPFV 114
Query: 284 SQGTSLNVSMSKLENSLKEEHNKFLYNSPDILIITPGRLVDHL-QMESFDLKTLKFLVLD 342
S ++N + ++ + N ++LI TPGRL D + +ME D + L+ L+LD
Sbjct: 115 STLPNVNSVLLVGGREVEADMNTLEEEGANLLIGTPGRLSDMMKRMEFLDFRNLEILILD 174
Query: 343 EADRLLNQSFQNWNQVLFHHLTNDKQDKRPGNVIKMVFSATLTTNAEKLYNLYLHNPKIF 402
EADRLL+ FQ + L + +R G +FSAT T L L N
Sbjct: 175 EADRLLDMGFQKQVNYIISRL---PKQRRTG-----LFSATQTQAVADLAKAGLRNAMEV 226
Query: 403 LT--DSVKLYSIPKKLQELNVNIPTAKSLFKPLLLLRIIHDIKSSASRNAKILVFVKSNE 460
++ +S S + L S LL+ ++N K++VF +
Sbjct: 227 ISGAESKSKTSSGLYCEYLKCEADQKSSQLVHLLI----------ENKNKKLVVFFMTC- 275
Query: 461 ASIRLESLLHAMLGSGIIEDEYNMFLXXXXXXXXXXXXRKLIQEFASSEQKKSVLISTDI 520
A + L+ + I ++ + F +E VL+ TD+
Sbjct: 276 ACVDYWGLVLSK-----IPTLKSISFFSTHGKMDQKGRDTALASF--TEASSGVLLCTDV 328
Query: 521 MARGIDINEITHVINYDLPISSQQYVHRCGRTARANTEGIAINLLVGK 568
ARG+DI I +V+ YD P ++HR GRTAR +G AI L+ K
Sbjct: 329 AARGLDIPGIDYVVQYDPPQDPDVFIHRVGRTARMERQGRAIVFLMPK 376
>CE25121 [A] KOG0335 ATP-dependent RNA helicase
Length = 763
Score = 103 bits (256), Expect = 1e-21
Identities = 108/424 (25%), Positives = 186/424 (43%), Gaps = 52/424 (12%)
Query: 159 WDAATKIHYDSKMV--KQFDSY-EGELDARLLKNITSNFSSETFPIQTILFDKVLPLLNS 215
+DA K+ K V K ++ E L + KN+ S+T PIQ LPL++
Sbjct: 322 FDAEVKLTSSEKTVGIKPCKTFAEANLTETMQKNVAHAGYSKTTPIQQY----ALPLVHQ 377
Query: 216 SFKANRKLFTRRVGDILVNASTGSGKTLAYSVPLV-QILRSRTVNKV-------RAIILV 267
+ DI+ A TGSGKT A+ +P++ +++ +N R IIL
Sbjct: 378 GY------------DIMACAQTGSGKTAAFLLPIMTRLIDDNNLNTAGEGGCYPRCIILT 425
Query: 268 PTKILIHQVYDCLSKLSQGTSLNVSMSKLENSLKEEHNKF-LYNSPDILIITPGRLVDHL 326
PT+ L Q+Y+ K + T + + + L +NK + I++ T GR+
Sbjct: 426 PTRELADQIYNEGRKFAYQTMMEIK--PVYGGLAVGYNKGQIEKGATIIVGTVGRIKHFC 483
Query: 327 QMESFDLKTLKFLVLDEADRLLN-QSFQNWNQVLFHHLTNDKQDKRPGNVIKMVFSATLT 385
+ + L +F VLDEADR+++ F + + ++ + +++ R ++FSAT
Sbjct: 484 EEGTIKLDKCRFFVLDEADRMIDAMGFGTDIETIVNYDSMPRKENRQ----TLMFSATFP 539
Query: 386 TNAEKLYNLYLHNPKIFLTDSVKLYSIPKKLQELNVNIPTAKSLFKPLLLLRIIHDI--- 442
+ ++ +L + + K+ + K + + ++ K L LL I D
Sbjct: 540 DSVQEAARAFLRENYVMIAID-KIGAANKCVLQEFERCERSEKKDKLLELLGIDIDSYTT 598
Query: 443 -KSSASRNAKILVFVKSNEASIRLESLLHAMLGSGIIEDEYNMFLXXXXXXXXXXXXRKL 501
KS+ K +VFV + L S+L + I +
Sbjct: 599 EKSAEVYTKKTMVFVSQRAMADTLASILSSAQVPAI----------TIHGAREQRERSEA 648
Query: 502 IQEFASSEQKKSVLISTDIMARGIDINEITHVINYDLPISSQQYVHRCGRTARANTEGIA 561
+++F + K VLI+T + RG+DI + HVINYD+P + Y+HR GRT R G A
Sbjct: 649 LRQFRNGS--KPVLIATAVAERGLDIKGVDHVINYDMPDNIDDYIHRIGRTGRVGNSGRA 706
Query: 562 INLL 565
+ +
Sbjct: 707 TSFI 710
>At5g63630 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 522
Score = 103 bits (256), Expect = 1e-21
Identities = 96/370 (25%), Positives = 175/370 (46%), Gaps = 43/370 (11%)
Query: 230 DILVNASTGSGKTLAYSVPLVQIL----RSRTVNK---VRAIILVPTKILIHQVY-DCLS 281
D+L A TG+GKT+A+ +P ++++ + NK + A+++ PT+ L +Q + +
Sbjct: 93 DVLAKAKTGTGKTVAFLLPSIEVVVKSPPTSPDNKRPPILALVICPTRELANQAATEANT 152
Query: 282 KLSQGTSLNVSMSKLENSLKEEHNKFLYNSPDILIITPGRLVDHLQME---SFDLKTLKF 338
L S+ V + L E + N IL+ TPGRL DH++ + LK +K
Sbjct: 153 LLKYHPSIGVQVVIGGTRLGLEQKRMQTNPCQILVATPGRLKDHIENTPGFATRLKGVKV 212
Query: 339 LVLDEADRLLNQSFQNWNQVLFHHLTNDKQDKRPGNVIKMVFSATLTTNAEKLYNLYLHN 398
LVLDEAD LL+ F+ + + + ++Q +FSAT+ ++ + L
Sbjct: 213 LVLDEADHLLDMGFRKDIERIISAVPKERQT--------FLFSATVPEEVRQICLVALRR 264
Query: 399 PKIFLT----DSVKLYSIPKKLQELNVNIPTAKSLFKPLLLLRIIHDIKSSASRNAKILV 454
F+ +++ + +++ + ++ SL LL I+ ++ + K++V
Sbjct: 265 DHEFVNCVHEGTIETHQQVRQMHMI-ASLDRHFSLLYTLLREHIMGNV------DYKVIV 317
Query: 455 FVKSNEASIRLESLLHAMLGSGIIEDEYNMFLXXXXXXXXXXXXRKLIQEFASSEQKKSV 514
F + + L+ +LG E N+ + ++ EF S K +
Sbjct: 318 FC----TTAMVTKLVADLLG------ELNLNVREIHSRKPQSYRTRVSNEFRKS--KGLI 365
Query: 515 LISTDIMARGIDINEITHVINYDLPISSQQYVHRCGRTARANTEGIAINLLVGKGEQKFW 574
L+++D+ ARG+D ++T V+ LP +QY+HR GRT R EG I LL+ E+ F
Sbjct: 366 LVTSDVSARGVDYPDVTLVLQVGLPKDREQYIHRLGRTGRKGKEGEGI-LLLAPWEEYFL 424
Query: 575 SQHIDTDLSR 584
S D +++
Sbjct: 425 SSLKDLPITK 434
>At3g22310 [A] KOG0331 ATP-dependent RNA helicase
Length = 610
Score = 103 bits (256), Expect = 1e-21
Identities = 90/356 (25%), Positives = 155/356 (43%), Gaps = 72/356 (20%)
Query: 230 DILVNASTGSGKTLAYSVPLVQILRSRTVNKVRA-----IILVPTKILIHQVYDCLSK-- 282
D++ A TG+GKTLA+ +P++ + R ++L PT+ L QV +
Sbjct: 155 DMIGRARTGTGKTLAFGIPIIDKIIKFNAKHGRGKNPQCLVLAPTRELARQVEKEFRESA 214
Query: 283 -------LSQGTSLNVSMSKLENSLKEEHNKFLYNSPDILIITPGRLVDHLQMESFDLKT 335
L GT + M +L + D+ + TPGR++D ++ + +L
Sbjct: 215 PSLDTICLYGGTPIGQQMRELNYGI------------DVAVGTPGRIIDLMKRGALNLSE 262
Query: 336 LKFLVLDEADRLLNQSFQNWNQVLFHHLTNDKQDKRPGNVIKMVFSATLTTNAEKLYNLY 395
++F+VLDEAD++L F +++ L +Q M+FSAT+ + L Y
Sbjct: 263 VQFVVLDEADQMLQVGFAEDVEIILQKLPAKRQ--------SMMFSATMPSWIRSLTKKY 314
Query: 396 LHNPKIF---------LTDSVKLYSIPKKLQELNVNIPTAKSLFKPLLLLRIIHDIKSSA 446
L+NP L D + +YSI A S + II +
Sbjct: 315 LNNPLTIDLVGDSDQKLADGITMYSI------------AADSYGR----ASIIGPLVKEH 358
Query: 447 SRNAKILVFVKSNEASIRLESLLHAMLGSGIIEDEYNMFLXXXXXXXXXXXXRKLIQEFA 506
+ K +VF ++ + RL L + + + + + F
Sbjct: 359 GKGGKCIVFTQTKRDADRLAFGLAKSYKCEALHGDISQ-----------AQRERTLAGF- 406
Query: 507 SSEQKKSVLISTDIMARGIDINEITHVINYDLPISSQQYVHRCGRTARANTEGIAI 562
+ S+L++TD+ ARG+D+ + VI+Y+LP +++ +VHR GRT RA +G AI
Sbjct: 407 -RDGNFSILVATDVAARGLDVPNVDLVIHYELPNNTETFVHRTGRTGRAGKKGSAI 461
>YBR237w [A] KOG0334 RNA helicase
Length = 849
Score = 102 bits (255), Expect = 1e-21
Identities = 95/359 (26%), Positives = 168/359 (46%), Gaps = 45/359 (12%)
Query: 230 DILVNASTGSGKTLAYSVPLV-QILRSRTVNKVRA----IILVPTKILIHQVYDCLSKLS 284
D++ + TGSGKT++Y +PL+ Q+ R ++K +IL PT+ L Q+++ ++K +
Sbjct: 295 DVIGISKTGSGKTISYLLPLLRQVKAQRPLSKHETGPMGLILAPTRELALQIHEEVTKFT 354
Query: 285 QGTSLNVSMSKLENSLKEEHNKFLYNSPDILIITPGRLVDHLQMESFDL---KTLKFLVL 341
+ + S+ S ++ L +I++ TPGR +D L + L K + F+V+
Sbjct: 355 EADTSIRSVCCTGGSEMKKQITDLKRGTEIVVATPGRFIDILTLNDGKLLSTKRITFVVM 414
Query: 342 DEADRLLNQSFQNWNQVLFHHLTNDKQDKRPGNVIKMVFSATLTTNAEKLYNLYLHNP-- 399
DEADRL + F+ + + DKQ ++FSAT LH+P
Sbjct: 415 DEADRLFDLGFEPQITQIMKTVRPDKQC--------VLFSATFPNKLRSFAVRVLHSPIS 466
Query: 400 -----KIFLTDSVK-----LYSIPKKLQELNVNIPTAKSLFKPLLLLRIIHDIKSSASR- 448
K + ++VK +S +K L I F + + +D +SS
Sbjct: 467 ITINSKGMVNENVKQKFRICHSEDEKFDNLVQLIHERSEFFDEV---QSENDGQSSDVEE 523
Query: 449 -NAKILVFVKSNEASIRLESLLHAMLGSGIIEDEYNMFLXXXXXXXXXXXXRKLIQEFAS 507
+AK ++FV S + + +L +GI+ +L+
Sbjct: 524 VDAKAIIFVSSQNIC---DFISKKLLNAGIV---------TCAIHAGKPYQERLMNLEKF 571
Query: 508 SEQKKSVLISTDIMARGIDINEITHVINYDLPISSQQYVHRCGRTARANTEGIAINLLV 566
+K S+L+ T++++RG+++ E++ VI Y+ + QYVH GRTAR + G AI LL+
Sbjct: 572 KREKNSILLCTEVLSRGLNVPEVSLVIIYNAVKTFAQYVHTTGRTARGSRSGTAITLLL 630
>ECU08g1080 [A] KOG0331 ATP-dependent RNA helicase
Length = 495
Score = 102 bits (255), Expect = 1e-21
Identities = 88/340 (25%), Positives = 162/340 (46%), Gaps = 41/340 (12%)
Query: 230 DILVNASTGSGKTLAYSVPLVQILRSRTVNKVR------AIILVPTKILIHQVYDCLSKL 283
D++ A TGSGKTL++ +P ++ ++ +R ++L PT+ L+ Q+ + +
Sbjct: 126 DMVGIAQTGSGKTLSFILPA--LVHAKDQQPLRRGDGPIVLVLAPTRELVMQIKKVVDEF 183
Query: 284 SQGTSLNVSMSKLENSLKEEHNKFLYNSPDILIITPGRLVDHLQMESFDLKTLKFLVLDE 343
+L S + + + + L+ +++I TPGRL+D L + FLVLDE
Sbjct: 184 CGMFNLR-STAVYGGASSQPQIRALHEGAEVVIATPGRLIDLHDQGHAPLSRVTFLVLDE 242
Query: 344 ADRLLNQSFQNWNQVLFHHLTNDKQDKRPGNVIKMVFSATLTTNAEKLYNLYLHNPKIFL 403
ADR+L+ F+ + + ++Q +++SAT L Y++ +
Sbjct: 243 ADRMLDMGFEPQLRKIIPKTNANRQT--------LMWSATWPREVRGLAESYMNEYIQVV 294
Query: 404 TDSVKLYSIPKKLQELNVNIPTAKSLFKPLLLLRIIHDIKSSASRNAKILVFVKSNEASI 463
+ +L + K Q + V K L+ ++ + K K++VF
Sbjct: 295 VGNEELKTNSKIKQIVEV----CSGREKEDKLIGVLDNFKGD-----KVIVFCNMKRTCD 345
Query: 464 RLESLLHAM-LGSGIIEDEYNMFLXXXXXXXXXXXXRKLIQEFASSEQKKSVLISTDIMA 522
LE +L+ G+ + + + + K++ +F S ++ +LI+T++
Sbjct: 346 DLEYVLNRSGYGAAALHGDKSQNIRD-----------KVLDDFRSG--RRPILIATEVAG 392
Query: 523 RGIDINEITHVINYDLPISSQQYVHRCGRTARANT-EGIA 561
RG+D+N++ VIN+D P S + YVHR GRTAR NT EGI+
Sbjct: 393 RGLDVNDVKLVINFDFPGSCEDYVHRIGRTARGNTKEGIS 432
>At3g09620 [A] KOG0334 RNA helicase
Length = 989
Score = 102 bits (255), Expect = 1e-21
Identities = 88/343 (25%), Positives = 150/343 (43%), Gaps = 66/343 (19%)
Query: 230 DILVNASTGSGKTLAYSVPLVQILRSRTVNKVR----AIILVPTKILIHQVYDCLSKLSQ 285
D + A TGSGKTL + +P+++ ++ + + +++ PT+ L+ Q+Y + K S+
Sbjct: 435 DCIGVAKTGSGKTLGFVLPMLRHIKDQPPVEAGDGPIGLVMAPTRELVQQIYSDIRKFSK 494
Query: 286 GTSLNVSMSKLENSLKEEHNKFLYNSPDILIITPGRLVDHLQMES---FDLKTLKFLVLD 342
+ + + S + L +I++ TPGR++D L S +L+ + +LV+D
Sbjct: 495 ALGI-ICVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSSGKITNLRRVTYLVMD 553
Query: 343 EADRLLNQSFQNWNQVLFHHLTNDKQDKRPGNVIKMVFSATLTTNAEKLYNLYLHNPKIF 402
EADR+ + F+ + ++ D+Q ++FSAT E L L+ P
Sbjct: 554 EADRMFDMGFEPQITRIVQNIRPDRQ--------TVLFSATFPRQVETLARKVLNKPVEI 605
Query: 403 LTDSVKLYSIPKKLQELNVNIPTAKSLFKPLLLLRIIHDIKSSASRNAKILVFVKSNEAS 462
+ + K + +L V I F LL ++ K+LVFV+S E S
Sbjct: 606 QVGGRSV--VNKDITQL-VEIRPESERFSRLL------ELLGEWYEKGKVLVFVRSQEKS 656
Query: 463 IRLESLLHAMLGSGIIEDEYNMFLXXXXXXXXXXXXRKLIQEFASSEQKKSVLISTDIMA 522
I S D N+ LI+T + A
Sbjct: 657 I-----------SDFKSDVCNL------------------------------LIATSVAA 675
Query: 523 RGIDINEITHVINYDLPISSQQYVHRCGRTARANTEGIAINLL 565
RG+D+ E+ V+N+D P + YVHR GRT RA +G A+ +
Sbjct: 676 RGLDVKELELVVNFDAPNHYEDYVHRVGRTGRAGRKGCAVTFI 718
>CE09012 [A] KOG0335 ATP-dependent RNA helicase
Length = 974
Score = 102 bits (254), Expect = 2e-21
Identities = 112/426 (26%), Positives = 184/426 (42%), Gaps = 56/426 (13%)
Query: 159 WDAATKIHYDSKMV-----KQFDSYEGELDARLLKNITSNFSSETFPIQTILFDKVLPLL 213
+DA KI D K V K F E L + KN+ ++T PIQ LPL+
Sbjct: 533 FDAEVKITSDKKPVGVKTCKTFS--EANLGETMKKNVAHAGYTKTTPIQQY----TLPLI 586
Query: 214 NSSFKANRKLFTRRVGDILVNASTGSGKTLAYSVPLV-QILRSRTVNKV-------RAII 265
+ DI+ A TGSGKT A+ +P++ +++ +N R II
Sbjct: 587 HQGH------------DIMACAQTGSGKTAAFLLPIMARLIDENDLNTAGEGGCYPRCII 634
Query: 266 LVPTKILIHQVYDCLSKLSQGTSLNVSMSKLENSLKEEHNKF-LYNSPDILIITPGRLVD 324
L PT+ L Q+Y+ K + T + + + L +NK + I++ T GR+
Sbjct: 635 LTPTRELTDQIYNEGRKFAYQTMMEIR--PVYGGLAVGYNKGQIEKGATIIVGTVGRIKH 692
Query: 325 HLQMESFDLKTLKFLVLDEADRLLN-QSFQNWNQVLFHHLTNDKQDKRPGNVIKMVFSAT 383
+ + L +F VLDEADR+++ F + ++ + K++ R ++FSAT
Sbjct: 693 FCEEGTIKLDKCRFFVLDEADRMIDAMGFGTDIDTIVNYESMPKKENRQ----TLMFSAT 748
Query: 384 LTTNAEKLYNLYLHNPKIFLTDSVKLYSIPKKLQELNVNIPTAKSLFKPLLLLRIIHDI- 442
+ ++ +L I L K+ + K + + ++ K L +L I D
Sbjct: 749 FPDSVQEAARNHLKEGYIMLAID-KIGAANKCVLQEFEKCDRSEKKDKLLEILGIDIDSY 807
Query: 443 ---KSSASRNAKILVFVKSNEASIRLESLLHAMLGSGIIEDEYNMFLXXXXXXXXXXXXR 499
K+S K +VFV + L S+L + I
Sbjct: 808 TTEKNSEVYTKKTIVFVSQRAMADTLASILSSAQVPAI----------TIHGAREQRERS 857
Query: 500 KLIQEFASSEQKKSVLISTDIMARGIDINEITHVINYDLPISSQQYVHRCGRTARANTEG 559
+ +++F + K VLI+T + RG+DI + HVINYD+P + Y+HR GRT R G
Sbjct: 858 EALRQFRNGS--KPVLIATAVAERGLDIKGVDHVINYDMPDNIDDYIHRIGRTGRVGNAG 915
Query: 560 IAINLL 565
A + +
Sbjct: 916 RATSFI 921
>YHR169w [A] KOG0340 ATP-dependent RNA helicase
Length = 431
Score = 102 bits (253), Expect = 2e-21
Identities = 100/391 (25%), Positives = 172/391 (43%), Gaps = 56/391 (14%)
Query: 230 DILVNASTGSGKTLAYSVPLVQILRSRTVNKVRAIILVPTKILIHQVYDCLSKLSQGTSL 289
D + A TGSGKT+A++ P++ S + + ++L PT+ L Q+ + + L G+S+
Sbjct: 41 DCIGGAKTGSGKTIAFAGPML-TKWSEDPSGMFGVVLTPTRELAMQIAEQFTAL--GSSM 97
Query: 290 NVSMSKL---ENSLKEEHNKFLYNSPDILIITPGRLVDHLQMESFD----LKTLKFLVLD 342
N+ +S + E+ +++ + L P +I TPGRL H+ D L K+LVLD
Sbjct: 98 NIRVSVIVGGESIVQQALD--LQRKPHFIIATPGRLAHHIMSSGDDTVGGLMRAKYLVLD 155
Query: 343 EADRLLNQSFQNWNQVLFHHLTNDKQDKRPGNVIKMVFSATLTTNAEKLYNLYLHNPK-- 400
EAD LL +F + L +DKR ++F+AT+T + L N + K
Sbjct: 156 EADILLTSTFADHLATCISAL--PPKDKRQ----TLLFTATITDQVKSLQNAPVQKGKPP 209
Query: 401 --IFLTDSVKLYSIPKKLQELNVNIPTAKSLFKPLLLLRIIHDIKSSASRNAKILVFVKS 458
+ +SV +IP L+ + +P K L ++ + N ++FV
Sbjct: 210 LFAYQVESVDNVAIPSTLKIEYILVP---EHVKEAYLYQL---LTCEEYENKTAIIFVNR 263
Query: 459 NEASIRLESLLHAMLGSGIIEDEYNMFLXXXXXXXXXXXXRKLIQEFASSEQKKSVLIST 518
+ L L + + + + F ++ + +LI+T
Sbjct: 264 TMTAEILRRTL----------KQLEVRVASLHSQMPQQERTNSLHRFRANAAR--ILIAT 311
Query: 519 DIMARGIDINEITHVINYDLPISSQQYVHRCGRTARANTEGIAINLLVGKGEQKFWSQHI 578
D+ +RG+DI + V+NYD+P ++HR GRTARA G AI+ +
Sbjct: 312 DVASRGLDIPTVELVVNYDIPSDPDVFIHRSGRTARAGRIGDAISFVT------------ 359
Query: 579 DTDLSRDIDGYQPSAYLDEEKLSELFSIEDT 609
RD+ Q +K++E + DT
Sbjct: 360 ----QRDVSRIQAIEDRINKKMTETNKVHDT 386
>SPBC24C6.02 [A] KOG0345 ATP-dependent RNA helicase
Length = 606
Score = 102 bits (253), Expect = 2e-21
Identities = 94/355 (26%), Positives = 162/355 (45%), Gaps = 34/355 (9%)
Query: 230 DILVNASTGSGKTLAYSVPLVQILRSRTVNK--VRAIILVPTKILIHQVYDCLSKL--SQ 285
D++V A TGSGKTLAY +P + R ++ + A+I+ PT+ L Q+++ +L Q
Sbjct: 40 DLVVEAVTGSGKTLAYLLPCFDKVTRRDTDETGLGALIVAPTRELATQIFNVTKELLAYQ 99
Query: 286 GTSLNVSMSKL-------ENSLKEEHNKFLYNSPDILIITPGRLVDHLQMESFDLKTLKF 338
SL+ + + +L + F +P ++I TPGRL + + K L+
Sbjct: 100 PDSLDGGKKLVADMYIGGKGTLTNDLASFREKNPSVVIGTPGRLNE--MLSHISSKHLEI 157
Query: 339 LVLDEADRLLNQSFQNWNQVLFHHLTNDKQDKRPGNVIKMVFSATLTTNAEKLYNLYLHN 398
L+LDEAD L++ FQ Q + L + +R G +FSAT+ +
Sbjct: 158 LILDEADTLIDMGFQRTLQSIISQL---PKQRRTG-----LFSATMNDTVSSFLKI---- 205
Query: 399 PKIFLTDSVKLYSIPKKLQELNVNIPTAKSLFKPLLLLRIIHDIKSSASRNAKILVFVKS 458
L +SV++ S+ ++++ P+ SL L++ I+ ++ +L ++
Sbjct: 206 --AGLRNSVRV-SVTVTSKKIDTRTPS--SLAIQSLVIPPIYKVQCM----IHLLCTIEY 256
Query: 459 NEASIRLESLLHAMLGSGIIEDEYNMFLXXXXXXXXXXXXRKLIQEFASSEQKKSVLIST 518
+A + S + + F R E KK+VL +T
Sbjct: 257 EKAIVFFSSCASVEYFNSLFLTYKLPFEIVALHGQQVQSNRSRNFEKFKKSNKKTVLFTT 316
Query: 519 DIMARGIDINEITHVINYDLPISSQQYVHRCGRTARANTEGIAINLLVGKGEQKF 573
DI +RG+DI + V+ D P+ + + HRCGR RA G+AI LL E+++
Sbjct: 317 DIASRGLDIPNVDFVLQLDPPLDPKSFSHRCGRAGRAGRAGVAIVLLNDGREEEY 371
>SPAC1006.07 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 392
Score = 102 bits (253), Expect = 2e-21
Identities = 85/359 (23%), Positives = 166/359 (45%), Gaps = 43/359 (11%)
Query: 230 DILVNASTGSGKTLAYSVPLVQILRSRTVNKVRAIILVPTKILIHQVYDCLSKLSQGTSL 289
D+L A +G+GKT +S+ ++Q + + ++ + +A+IL PT+ L Q+ + L G +
Sbjct: 58 DVLAQAQSGTGKTATFSISVLQKIDT-SLKQCQALILAPTRELAQQIQKVVVAL--GDLM 114
Query: 290 NVSMSK-LENSLKEEHNKFLYNSPDILIITPGRLVDHLQMESFDLKTLKFLVLDEADRLL 348
NV + +L + L +++ TPGR+ D +Q + ++ VLDEAD +L
Sbjct: 115 NVECHACIGGTLVRDDMAALQAGVHVVVGTPGRVHDMIQRRALPTDAVQMFVLDEADEML 174
Query: 349 NQSFQNWNQVLFHHLTNDKQDKRPGNVIKMVFSATLTTNAEKLYNLYLHNPKIFLT--DS 406
++ F++ +F L P ++ SAT+ + ++ ++ +P L D
Sbjct: 175 SRGFKDQIYDIFQLL--------PPTAQVVLLSATMPQDVLEVTTKFMRDPIRILVKKDE 226
Query: 407 VKLYSIPKKLQELNVNIPTAKSLFKPLLLLRIIHDIKSSASRNAKILVFVKSNEASIRLE 466
+ L I + + K +K L + D+ + + ++ + E
Sbjct: 227 LTLEGIKQ------FYVAVEKEEWK----LDTLCDLYETVTVTQAVIFCNTRRKVDWLTE 276
Query: 467 SLLHAMLGSGIIEDEYNMFLXXXXXXXXXXXXRKLIQEFASSEQKKSVLISTDIMARGID 526
L E + + L+ EF + + +LI+TD++ARGID
Sbjct: 277 QLT-----------ERDFTVSSMHGDMDQAQRDTLMHEFRTGSSR--ILITTDLLARGID 323
Query: 527 INEITHVINYDLPISSQQYVHRCGRTARANTEGIAINLLVG------KGEQKFWSQHID 579
+ +++ VINYDLP + + Y+HR GR R +G++IN + + ++F++ HI+
Sbjct: 324 VQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVSINFVTNDDVRMMREIEQFYNTHIE 382
>CE07736 [A] KOG0335 ATP-dependent RNA helicase
Length = 720
Score = 101 bits (252), Expect = 3e-21
Identities = 97/350 (27%), Positives = 161/350 (45%), Gaps = 33/350 (9%)
Query: 230 DILVNASTGSGKTLAYSVPLV-QILRSRTVNK-------VRAIILVPTKILIHQVYDCLS 281
DIL A TGSGKT A+ +P++ +++ + +N R IIL PT+ L Q+Y+
Sbjct: 337 DILACAQTGSGKTAAFLLPIMSRLILEKDLNYGAEGGCYPRCIILTPTRELADQIYNEGR 396
Query: 282 KLSQGTSLNVSMSKLENSLKEEHNKF-LYNSPDILIITPGRLVDHLQMESFDLKTLKFLV 340
K S + + + + + +NK + I++ T GR+ + + L ++LV
Sbjct: 397 KFSYQSVMEIK--PVYGGINVGYNKSQIMKGCTIIVGTIGRVKHFCEDGAIKLDKCRYLV 454
Query: 341 LDEADRLLNQ-SFQNWNQVLFHHLTNDKQDKRPGNVIKMVFSATLTTNAEKLYNLYLHNP 399
LDEADR+++ F + + ++ K DKR M+FSAT ++ ++ L
Sbjct: 455 LDEADRMIDSMGFGPEIEQIINYKNMPKNDKRQ----TMMFSATFPSSVQEAARKLLRED 510
Query: 400 KIFLTDSVKLYSIPKKLQELNVNIPTAKSLFKPLLLLRIIHDIKSSASRN----AKILVF 455
+T + +QE + T+K + K L LL I D ++ + K +VF
Sbjct: 511 YTMITIDKIGAANKCVIQEFELCDRTSK-VDKLLKLLGIDIDTYTTEKNSDVFVKKTIVF 569
Query: 456 VKSNEASIRLESLLHAMLGSGIIEDEYNMFLXXXXXXXXXXXXRKLIQEFASSEQKKSVL 515
V + + L S++ A I + KL + A K VL
Sbjct: 570 VAQQKMADTLASIMSAAQVPAIT-------IHGAREQKERSAALKLFRSGA-----KPVL 617
Query: 516 ISTDIMARGIDINEITHVINYDLPISSQQYVHRCGRTARANTEGIAINLL 565
I+T ++ RG+DI + HVINYD+P + Y+HR GRT R G A + +
Sbjct: 618 IATAVVERGLDIKGVDHVINYDMPNNIDDYIHRIGRTGRVGNSGRATSFI 667
>Hs7662318 [A] KOG0334 RNA helicase
Length = 1032
Score = 100 bits (250), Expect = 5e-21
Identities = 94/349 (26%), Positives = 162/349 (45%), Gaps = 49/349 (14%)
Query: 230 DILVNASTGSGKTLAYSVPLVQ-ILRSRTVNKVR---AIILVPTKILIHQVYDCLSKLSQ 285
D++ A TGSGKT+A+ +P+ + I+ R++ + A+I+ PT+ L Q+ K S+
Sbjct: 411 DLIGIAKTGSGKTIAFLLPMFRHIMDQRSLEEGEGPIAVIMTPTRELALQITKECKKFSK 470
Query: 286 GTSLNVSMSKLENSLKEEHNKFLYNSPDILIITPGRLVDHLQMES---FDLKTLKFLVLD 342
L V + E+ + L +I++ TPGR++D L S +L+ + ++VLD
Sbjct: 471 TLGLRVVCVYGGTGISEQIAE-LKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLD 529
Query: 343 EADRLLNQSFQNWNQVLFHHLTNDKQDKRPGNVIKMVFSATLTTNAEKLYNLYLHNPKIF 402
EADR+ + F+ + ++ D+Q ++FSAT E L L P
Sbjct: 530 EADRMFDMGFEPQVMRIVDNVRPDRQT--------VMFSATFPRAMEALARRILSKPI-- 579
Query: 403 LTDSVKLYSIPKKLQELNVNIPTAKSLFKPLLLLRIIHDIKSSASRNAKILVFV-KSNEA 461
V++ ++ + + K L LL ++ + S S +++FV K A
Sbjct: 580 ---EVQVGGRSVVCSDVEQQVIVIEEEKKFLKLLELLGHYQESGS----VIIFVDKQEHA 632
Query: 462 SIRLESLLHAM-----LGSGIIEDEYNMFLXXXXXXXXXXXXRKLIQEFASSEQKKSVLI 516
L+ L+ A L GI D+Y+ +I +F + K +L+
Sbjct: 633 DGLLKDLMRASYPCMSLHGGI--DQYDR--------------DSIINDFKNGTCK--LLV 674
Query: 517 STDIMARGIDINEITHVINYDLPISSQQYVHRCGRTARANTEGIAINLL 565
+T + ARG+D+ + V+NY P + YVHR GRT RA +G A +
Sbjct: 675 ATSVAARGLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFI 723
>CE27728 [A] KOG0346 RNA helicase
Length = 634
Score = 100 bits (250), Expect = 5e-21
Identities = 107/423 (25%), Positives = 191/423 (44%), Gaps = 48/423 (11%)
Query: 230 DILVNASTGSGKTLAYSVPLVQ--ILRSRTVNKV---RAIILVPTKILIHQVYDCLSKLS 284
+I+ A TGSGKT A+ +PLVQ I S+T + A+I+ PTK LI Q+Y KLS
Sbjct: 128 NIMGRARTGSGKTGAFLIPLVQKLIAESKTNDGSVGPSAVIIAPTKELITQIYKLFVKLS 187
Query: 285 QGTSLNVSMSKLENSLKEEHNKFLYNSPDILIITPGRLVDHLQMESFDLKTLKFLVLDEA 344
Q +++ + + +EE++ +L + +++ TPG+L+ + + +LV+DEA
Sbjct: 188 QALPFLQAINLCDIN-EEENSVWLEDRSHVVVTTPGKLLRMCSLRPEYCTLVSYLVMDEA 246
Query: 345 DRLLNQSFQNWNQVLFHHLTNDKQDKRPGNVIKMVFSATLTTNAEKLYNLYLHNPKIFL- 403
D LL+ ++ + + K P ++ SATL + L L++ P I +
Sbjct: 247 DLLLSFGYEEEMIKI--------RSKLPPTYQCLMTSATLKDDMTTLKKLFMTGPVITIK 298
Query: 404 --------TDSVKLYSIPKKLQELNVNIPTAKSLFKPLLLLRIIHDIKSSASRNAKILVF 455
+D + Y + E I A +FK L++ ++ R K+++
Sbjct: 299 LTEGDLPNSDQLTQYQLTCGSDEERFAILVA--MFKLKLIVGRSILFVNTIDRCYKLMLI 356
Query: 456 VK-SNEASIRLESLLHAMLGSGII----EDEYNMFLXXXXXXXXXXXXRKLIQEFASSEQ 510
++ S L S + A +I E Y + + KL +E A
Sbjct: 357 LRVFGLKSCILNSAMPANSRCHVINQFNEGSYQIVIASDVSDADGS---KLKEEIAGKSD 413
Query: 511 KK-----------SVLISTDIMARGIDINEITHVINYDLPISSQQYVHRCGRTARANTEG 559
+K S L ++RGID + +++V+N+D P ++ Y+HR GRTAR +G
Sbjct: 414 EKPEKDEKKGKKASKLDKESGVSRGIDFHHVSNVVNFDFPETTDAYIHRVGRTARGFNKG 473
Query: 560 IAINLLV--GKGEQKFWSQHIDTDLSRDIDGYQPSAYLDEEKLSELFSIEDTLKDTYKGC 617
A++ + + + + I+ + R + QP + +E + L + L KG
Sbjct: 474 TALSFCIPSERAHLEQIQEEINQQMGRKV--LQPYEFRIKELDTFLLRTREALSKCTKGV 531
Query: 618 IKQ 620
IK+
Sbjct: 532 IKK 534
>At4g00660 [A] KOG0326 ATP-dependent RNA helicase
Length = 499
Score = 100 bits (250), Expect = 5e-21
Identities = 99/365 (27%), Positives = 163/365 (44%), Gaps = 47/365 (12%)
Query: 230 DILVNASTGSGKTLAYSVPLVQILRSRTVNKVRAIILVPTKILIHQVYDCLSKLSQGTSL 289
DIL A G+GKT A+ +P+++ + ++ +L H C +L + +
Sbjct: 170 DILARAKNGTGKTAAFCIPVLEKIDQDNN------VIQGNCVLDHTSQVC-KELGKHLKI 222
Query: 290 NVSMSKLENSLKEEHNKFLYNSPDILIITPGRLVDHLQMESFDLKTLKFLVLDEADRLLN 349
V ++ SLK++ + LY +L+ TPGR++D + LK LV+DEAD+LL+
Sbjct: 223 QVMVTTGGTSLKDDIMR-LYQPVHLLVGTPGRILDLTKKGVCVLKDCSVLVMDEADKLLS 281
Query: 350 QSFQNWNQVLFHHLTNDKQDKRPGNVIKMVFSATLTTNAEKLYNLYLHNPKIF-LTDSVK 408
Q FQ + L L +Q ++FSAT + + +L NP + L D +
Sbjct: 282 QEFQPSVEHLISFLPESRQ--------ILMFSATFPVTVKDFKDRFLTNPYVINLMDELT 333
Query: 409 LYSIPK--KLQELNVNIPTAKSLFKPLLLLRIIHDIKSSASRNAKILVFVKSNEASIRLE 466
L I + E I +LF L+I I S N L+ K E
Sbjct: 334 LKGITQFYAFVEERQKIHCLNTLFSK---LQINQSIIFCNSVNRVELLAKKITELGYSC- 389
Query: 467 SLLHAMLGSGIIEDEYNMFLXXXXXXXXXXXXRKLIQEFASSEQKKSVLISTDIMARGID 526
+HA + ++D N ++ +F + + L+ TD+ RGID
Sbjct: 390 FYIHAKM----LQDHRN----------------RVFHDFRNGACRN--LVCTDLFTRGID 427
Query: 527 INEITHVINYDLPISSQQYVHRCGRTARANTEGIAINLLVGKGEQKFWSQHIDTDLSRDI 586
I + VIN+D P +++ Y+HR GR+ R G+A+NL+ E +F I+ +L +I
Sbjct: 428 IQAVNVVINFDFPKNAETYLHRVGRSGRFGHLGLAVNLIT--YEDRFNLYRIEQELGTEI 485
Query: 587 DGYQP 591
P
Sbjct: 486 KQIPP 490
>SPAC17G6.14c [A] KOG0329 ATP-dependent RNA helicase
Length = 434
Score = 100 bits (249), Expect = 7e-21
Identities = 96/345 (27%), Positives = 155/345 (44%), Gaps = 50/345 (14%)
Query: 230 DILVNASTGSGKTLAYSVPLVQILRSRTVNKVRAIILVPTKILIHQV---YDCLSKLSQG 286
D+L A +G GKT + + +Q + +V ++L T+ L Q+ Y SK
Sbjct: 90 DVLCQAKSGMGKTAVFVLSTLQQIEP-VDGEVSVLVLCHTRELAFQIKNEYARFSKYLPD 148
Query: 287 TSLNVSMSKLENSLKEEHNKFLYNSPDILIITPGRLVDHLQMESFDLKTLKFLVLDEADR 346
V + E K SP I++ TPGRL ++ + + ++K VLDE D+
Sbjct: 149 VRTAVFYGGINIKQDMEAFKDKSKSPHIVVATPGRLNALVREKILKVNSVKHFVLDECDK 208
Query: 347 LLNQ-SFQNWNQVLFHHLTNDKQDKRPGNVIKMVFSATLTTNAEKLYNLYLHNP-KIFLT 404
LL + Q +F KQ M+FSATL+ + ++ NP +I++
Sbjct: 209 LLESVDMRRDIQEVFRATPPQKQ--------VMMFSATLSNEIRPICKKFMQNPLEIYVD 260
Query: 405 DSVKLYSIPKKLQELNVNIPT-AKSLFKPLLLLRIIHDIKSSASRNAKILVFVKSNEASI 463
D KL LQ+ V + AK+ R I+D+ S N ++++FVKS +
Sbjct: 261 DETKLTL--HGLQQHYVKLEEKAKN--------RKINDLLDSLEFN-QVVIFVKSVSRAN 309
Query: 464 RLESLLHAM------LGSGIIEDEYNMFLXXXXXXXXXXXXRKLIQEFASSEQKKSVLIS 517
L+ LL + G+ ++E ++ + A + K + ++
Sbjct: 310 ELDRLLRECNFPSICIHGGLPQEE------------------RIKRYKAFKDFDKRICVA 351
Query: 518 TDIMARGIDINEITHVINYDLPISSQQYVHRCGRTARANTEGIAI 562
TD+ RGIDI + VINYD+P S Y+HR GR R T+G+AI
Sbjct: 352 TDVFGRGIDIERVNIVINYDMPDSPDSYLHRVGRAGRFGTKGLAI 396
>ECU10g0690 [A] KOG0345 ATP-dependent RNA helicase
Length = 463
Score = 100 bits (249), Expect = 7e-21
Identities = 90/342 (26%), Positives = 154/342 (44%), Gaps = 56/342 (16%)
Query: 230 DILVNASTGSGKTLAYSVPLVQIL---RSRTVNKVRAIILVPTKILIHQVYDCLSKLSQG 286
D++V + TG+GKT+A+ P++ + + R V A+++ PT+ L Q+ +
Sbjct: 43 DVVVQSPTGTGKTMAFLAPILSCIYDGKGRGRPGVTAVVITPTRELALQIREVAGLFDVK 102
Query: 287 TSLNVSMSKLENSLKEEHNKFLYNSPDILIITPGRLVDHLQMESFDLKTLKFLVLDEADR 346
+ +E K +F I + TPGRL++ + E+ +L LVLDEAD+
Sbjct: 103 CECFIGGMSIEEDYKRMKEEF-----SIAVGTPGRLLEIVGKETKKFSSLSHLVLDEADK 157
Query: 347 LLNQSFQNWNQVLFHHLTNDKQDKRPGNVIKMVFSATLTTNAEKLYNLYLHNPKIFLTDS 406
LL F+ L L P N + +FSAT + +KL ++L NP ++ +
Sbjct: 158 LLGFGFEEKLMQLLAKL--------PRNRVTGLFSATRNDSVDKLSRVFLRNP---VSIN 206
Query: 407 VKLYSIPKKLQELNVNIPTAKSLFKPLLLLRIIHDIKSSASRNAKILVFVKSNEASIRLE 466
V +P L+ + V+ P+ L ++ DI + I+ F +E
Sbjct: 207 VGNNEMPVALEYIVVS---------PMEKLLVLMDIVTG---RRCIVFFATCSEVDFFSG 254
Query: 467 SLLHAMLGS------GIIEDEYNMFLXXXXXXXXXXXXRKLIQEFASSEQKKSVLISTDI 520
+ A G+ I +DE N ++ +EF Q+ +L TD+
Sbjct: 255 LVSRAGFGNICKIHGKISQDERN----------------RVYEEFF---QRDGLLFCTDV 295
Query: 521 MARGIDINEITHVINYDLPISSQQYVHRCGRTARANTEGIAI 562
ARGID + V+++D+P VHR GRTAR ++G ++
Sbjct: 296 AARGIDFRGVDLVVHFDVPKEYSSIVHRSGRTARNGSKGESV 337
>Hs4758140 [A] KOG0326 ATP-dependent RNA helicase
Length = 472
Score = 100 bits (248), Expect = 9e-21
Identities = 93/359 (25%), Positives = 173/359 (47%), Gaps = 38/359 (10%)
Query: 230 DILVNASTGSGKTLAYSVPLVQILRSRTVNKVRAIILVPTKILIHQVYDCLSKLSQGTSL 289
DIL A G+GK+ AY +PL++ L + N ++A+++VPT+ L QV ++S+
Sbjct: 124 DILARAKNGTGKSGAYLIPLLERLDLKKDN-IQAMVIVPTRELALQVSQICIQVSKHMGG 182
Query: 290 NVSMSKLENSLKEEHNKFLYNSPDILIITPGRLVDHLQMESFDLKTLKFLVLDEADRLLN 349
M+ + + L ++ ++I TPGR++D ++ + ++ +VLDEAD+LL+
Sbjct: 183 AKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLS 242
Query: 350 QSFQNWNQVLFHHLTNDKQDKRPGNVIKMVFSATLTTNAEKLYNLYLHNPKIFLTDSVKL 409
Q F + + L ++Q +++SAT + +K N +L P
Sbjct: 243 QDFVQIMEDIILTLPKNRQ--------ILLYSATFPLSVQKFMNSHLQKP---------- 284
Query: 410 YSIPKKLQELNVNIPTAKSLFKPLLLLRIIHDIKSSASRNA--KILVFVKSNEASIRLES 467
Y I ++EL + T + + + +H + + SR + ++F S++ R+E
Sbjct: 285 YEI-NLMEELTLKGVT--QYYAYVTERQKVHCLNTLFSRLQINQSIIFCNSSQ---RVE- 337
Query: 468 LLHAMLGSGIIEDEYNMFLXXXXXXXXXXXXRKLIQEFASSEQKKSVLISTDIMARGIDI 527
+L I + Y+ F ++ +F + + L+ TD+ RGIDI
Sbjct: 338 ----LLAKKISQLGYSCF--YIHAKMRQEHRNRVFHDFRNGLCRN--LVCTDLFTRGIDI 389
Query: 528 NEITHVINYDLPISSQQYVHRCGRTARANTEGIAINLLVGKGEQKFWSQHIDTDLSRDI 586
+ VIN+D P ++ Y+HR GR+ R G+AINL+ + +F + I+ L +I
Sbjct: 390 QAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLIT--YDDRFNLKSIEEQLGTEI 446
>At5g51280 [A] KOG0341 DEAD-box protein abstrakt
Length = 591
Score = 100 bits (248), Expect = 9e-21
Identities = 87/352 (24%), Positives = 162/352 (45%), Gaps = 51/352 (14%)
Query: 230 DILVNASTGSGKTLAYSVPLVQI-LRSRTVNKVRA------IILVPTKILIHQVYDCLSK 282
D++ A TGSGKTL + +P++ I L+ + + A +I+ P++ L Q Y+ + +
Sbjct: 185 DMIGIAFTGSGKTLVFVLPMIMIALQEEMMMPIAAGEGPIGLIVCPSRELARQTYEVVEQ 244
Query: 283 -----LSQGTSLNVSMSKLENSLKEEHNKFLYNSPDILIITPGRLVDHLQMESFDLKTLK 337
+ G S+ + + + I++ TPGRL D L + L +
Sbjct: 245 FVAPLVEAGYPPLRSLLCIGGIDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMSLDACR 304
Query: 338 FLVLDEADRLLNQSFQNWNQVLFHHLTNDKQDKRPGNVIKMVFSATLTTNAEKLYNLYLH 397
+L LDEADRL++ F++ + +F H + +Q ++FSAT+ T
Sbjct: 305 YLTLDEADRLVDLGFEDDIREVFDHFKSQRQT--------LLFSATMPTK---------- 346
Query: 398 NPKIFLTDSVKLYSIPKKLQELNVNIPTAKSLFKPLLLLRIIHDIKSSASRNAKILVFVK 457
+++++ ++ + VN+ A + L +I +++ + AKI+ ++
Sbjct: 347 ---------IQIFARSALVKPVTVNVGRAGAAN-----LDVIQEVEY-VKQEAKIVYLLE 391
Query: 458 SNEASIRLESLLHAMLGSGIIEDEYNMFLXXXXXXXXXXXXR-KLIQEFASSE---QKKS 513
+ + +L ++D + L + + +E+A S KK
Sbjct: 392 CLQKTS--PPVLIFCENKADVDDIHEYLLLKGVEAVAIHGGKDQEDREYAISSFKAGKKD 449
Query: 514 VLISTDIMARGIDINEITHVINYDLPISSQQYVHRCGRTARANTEGIAINLL 565
VL++TD+ ++G+D +I HVINYD+P + YVHR GRT R GIA +
Sbjct: 450 VLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFI 501
>Hs21071032 [A] KOG0341 DEAD-box protein abstrakt
Length = 622
Score = 99.8 bits (247), Expect = 1e-20
Identities = 92/349 (26%), Positives = 156/349 (44%), Gaps = 45/349 (12%)
Query: 230 DILVNASTGSGKTLAYSVPLVQIL---RSRTVNKVR----AIILVPTKILIHQVYDCLS- 281
D++ A TGSGKTL +++P++ R R +I+ P++ L Q + L
Sbjct: 220 DMIGIAFTGSGKTLVFTLPVIMFCLEQEKRLPFSKREGPYGLIICPSRELARQTHGILEY 279
Query: 282 --KLSQGTS---LNVSMSKLENSLKEEHNKFLYNSPDILIITPGRLVDHLQMESFDLKTL 336
+L Q S L ++ S+KE+ + + +++ TPGRL+D LQ + L
Sbjct: 280 YCRLLQEDSSPLLRCALCIGGMSVKEQMET-IRHGVHMMVATPGRLMDLLQKKMVSLDIC 338
Query: 337 KFLVLDEADRLLNQSFQNWNQVLFHHLTNDKQDKRPGNVIKMVFSATLTTNAEKLYNLYL 396
++L LDEADR+++ F+ + +F + +Q ++FSAT+ + L
Sbjct: 339 RYLALDEADRMIDMGFEGDIRTIFSYFKGQRQT--------LLFSATMPKKIQNFAKSAL 390
Query: 397 HNPKIFLTDSVKLYSIPKKLQELNVNIPTAKSLFKPLLLLRIIHDIKSSASRNAKILVFV 456
P S+ +QE+ AK ++ L + + A + A V
Sbjct: 391 VKPVTINVGRAGAASLDV-IQEVEYVKEEAKMVYLLECLQKTPPPVLIFAEKKAD----V 445
Query: 457 KSNEASIRLESLLHAMLGSGIIEDEYNMFLXXXXXXXXXXXXRKLIQEFASSEQKKSVLI 516
+ + L+ + + G ++E K I+ F E KK VL+
Sbjct: 446 DAIHEYLLLKGVEAVAIHGGKDQEERT----------------KAIEAFR--EGKKDVLV 487
Query: 517 STDIMARGIDINEITHVINYDLPISSQQYVHRCGRTARANTEGIAINLL 565
+TD+ ++G+D I HVINYD+P + YVHR GRT R+ GIA +
Sbjct: 488 ATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFI 536
>SPCC10H11.01 [A] KOG0334 RNA helicase
Length = 1014
Score = 99.4 bits (246), Expect = 1e-20
Identities = 91/353 (25%), Positives = 168/353 (46%), Gaps = 42/353 (11%)
Query: 230 DILVNASTGSGKTLAYSVPLVQILRSRTVNKVR----AIILVPTKILIHQVY-DC---LS 281
D++ A TGSGKT+A+ +P+ + ++ + K AII+ PT+ L Q++ +C L
Sbjct: 457 DVIGVAKTGSGKTIAFLLPMFRHIKDQRPLKTGEGPIAIIMTPTRELAVQIFRECKPFLK 516
Query: 282 KLSQGTSLNVSMSKLENSLKEEHNKFLYNSPDILIITPGRLVDHLQMES---FDLKTLKF 338
L+ + +++ + + L +I++ TPGR++D L + +L +
Sbjct: 517 LLNIRACCAYGGAPIKDQIAD-----LKRGAEIVVCTPGRMIDVLSANAGRVTNLHRCTY 571
Query: 339 LVLDEADRLLNQSFQNWNQVLFHHLTNDKQDKRPGNVIKMVFSATLTTNAEKLYNLYLHN 398
LVLDEADR+ + F+ + +++ D+Q ++FSAT E L L
Sbjct: 572 LVLDEADRMFDLGFEPQVMRIINNIRPDRQ--------TVLFSATFPRAMEALARKVLKK 623
Query: 399 PKIFLTDSVKLYSIPKKLQELNVNIPTAKSLFKPLLLLRIIHDIKSSASRNAKILVFVKS 458
P + +V S+ E V + +S F LL ++ ++ ++ + + LVFV
Sbjct: 624 P---VEITVGGRSVVASEVEQIVEVRPEESKFS--RLLELLGELYNN-QLDVRTLVFVDR 677
Query: 459 NEASIRLESLLHAMLGSGIIEDEYNMFLXXXXXXXXXXXXRKLIQEFASSEQKKSVLIST 518
E++ ++LL ++ G + + I ++ + VLI+T
Sbjct: 678 QESA---DALLSDLMKRGYTSNSIH-------GGKDQHDRDSTISDYKAG--VFDVLIAT 725
Query: 519 DIMARGIDINEITHVINYDLPISSQQYVHRCGRTARANTEGIAINLLVGKGEQ 571
++ARG+D+ + V+NYD P + YVHR GRT RA G+A+ + + E+
Sbjct: 726 SVVARGLDVKSLQLVVNYDCPNHMEDYVHRVGRTGRAGHTGVAVTFITPEQEK 778
>Hs13129006 [A] KOG0331 ATP-dependent RNA helicase
Length = 737
Score = 99.0 bits (245), Expect = 2e-20
Identities = 85/340 (25%), Positives = 156/340 (45%), Gaps = 33/340 (9%)
Query: 230 DILVNASTGSGKTLAYSVPLVQILR--SRTVNKVRA---IILVPTKILIHQVYDCLSKLS 284
D++ A TG+GKT ++++PL++ L+ T+ K R+ ++L PT+ L +QV ++
Sbjct: 176 DLIAQARTGTGKTFSFAIPLIERLQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDIT 235
Query: 285 QGTSLNVSMSKLENSLKEEHNKFLYNSPDILIITPGRLVDHLQMESFDLKTLKFLVLDEA 344
+ L+V+ S + + N + N DIL+ TPGR+ DHLQ DL L+ +VLDE
Sbjct: 236 R--KLSVACFYGGTSYQSQINH-IRNGIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEV 292
Query: 345 DRLLNQSFQNWNQVLFHHLTNDKQDKRPGNVIKMVFSATLTTNAEKLYNLYLHN--PKIF 402
D++L+ F + + H + P ++FSAT K+ Y+ + ++
Sbjct: 293 DQMLDLGFAEQVEDIIHESYKTDSEDNPQT---LLFSATCPQWVYKVAKKYMKSRYEQVD 349
Query: 403 LTDSVKLYSIPKKLQELNVNIPTAKSLFKPLLLLRIIHDIKSSASRNAKILVFVKSNEAS 462
L + ++ L + ++ +P ++ ++ S R ++F ++ +
Sbjct: 350 LVGKM-TQKAATTVEHLAIQCHWSQ---RPAVIGDVLQVYSGSEGR---AIIFCETKKNV 402
Query: 463 IRLESLLHAMLGSGIIEDEYNMFLXXXXXXXXXXXXRKLIQEFASSEQKKSVLISTDIMA 522
+ H + + + ++ I E VL++T++ A
Sbjct: 403 TEMAMNPHIKQNAQCLHGD-------------IAQSQREITLKGFREGSFKVLVATNVAA 449
Query: 523 RGIDINEITHVINYDLPISSQQYVHRCGRTARANTEGIAI 562
RG+DI E+ VI P + Y+HR GRT RA GI I
Sbjct: 450 RGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICI 489
>CE03025 [A] KOG0329 ATP-dependent RNA helicase
Length = 425
Score = 99.0 bits (245), Expect = 2e-20
Identities = 84/350 (24%), Positives = 155/350 (44%), Gaps = 42/350 (12%)
Query: 230 DILVNASTGSGKTLAYSVPLVQILRSRTVNKVRAIILVPTKILIHQV---YDCLSKLSQG 286
D++ A +G GKT + + +Q L +V + + T+ L Q+ Y+ SK G
Sbjct: 80 DVVCQAKSGMGKTAVFVITTLQQLEP-VDGEVSVVCMCHTRELAFQISKEYERFSKYLPG 138
Query: 287 TSLNVSMSKLENSLKEEHNKFLYNSPDILIITPGRLVDHLQMESFDLKTLKFLVLDEADR 346
+ V + ++K++ + + P I++ TPGR++ + L +K+ VLDE D+
Sbjct: 139 VKVAVFFGGM--AIKKDEERLANDCPHIVVGTPGRMLALARSGKLKLDKVKYFVLDECDK 196
Query: 347 LLNQSFQNWNQVLFHHLTNDKQD---KRPGNVIKMVFSATLTTNAEKLYNLYLHNP-KIF 402
++ + + D Q+ P M+FSATL + ++ +P +++
Sbjct: 197 MIGDA----------DMRRDVQEIVKMTPQQKQVMMFSATLPKELRTVCKRFMQDPMEVY 246
Query: 403 LTDSVKLYSIPKKLQELNVNIPTAKSLFKPLLLLRIIHDIKSSASRNAKILVFVKSNEAS 462
+ D KL L L + K K LL ++ ++ + ++++FVK+ +
Sbjct: 247 VDDEAKL-----TLHGLQQHYVKLKEAEKNRRLLNLLDALEFN-----QVVIFVKAVKRC 296
Query: 463 IRLESLLHAMLGSGIIEDEYNMFLXXXXXXXXXXXXRKLIQEFASSEQKKSVLISTDIMA 522
L LL E N +L + A + +K +L++TD+
Sbjct: 297 EALHQLL----------TEQNF--PSIAIHRQMAQEERLSRYQAFKDFQKRILVATDLFG 344
Query: 523 RGIDINEITHVINYDLPISSQQYVHRCGRTARANTEGIAINLLVGKGEQK 572
RG+DI + V NYD+P S Y+HR R R T+G+AI + + + K
Sbjct: 345 RGMDIERVNIVFNYDMPEDSDSYLHRVARAGRFGTKGLAITFVSDENDAK 394
>At1g63250 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 798
Score = 99.0 bits (245), Expect = 2e-20
Identities = 98/371 (26%), Positives = 170/371 (45%), Gaps = 48/371 (12%)
Query: 230 DILVNASTGSGKTLAYSVPLVQIL-----RSRTVNKVR---AIILVPTKILIHQVY---D 278
D LV A TG+GK++A+ +P ++ + + VNKV A+IL PT+ L Q+
Sbjct: 367 DALVKAKTGTGKSMAFLLPAIETVLKAMNSGKGVNKVAPIFALILCPTRELASQIAAEGK 426
Query: 279 CLSKLSQGTSLNVSMSKLENSLKEEHNKFLYNSP-DILIITPGRLVDHLQMES---FDLK 334
L K G + + L ++ L + P ILI TPGRL+DH++ +S L
Sbjct: 427 ALLKFHDGIGVQTLIGGTRFKLDQQR---LESEPCQILIATPGRLLDHIENKSGLTSRLM 483
Query: 335 TLKFLVLDEADRLLNQSFQNWNQVLFHHLTNDKQDKRPGNVIKMVFSATLTTNAEKLYNL 394
LK ++DEAD LL+ F+ + + L +Q ++FSAT+ ++ L
Sbjct: 484 ALKLFIVDEADLLLDLGFRRDVEKIIDCLPRQRQS--------LLFSATIPKEVRRVSQL 535
Query: 395 YLHNPKIFLTDSVKLYSIPK--KLQELNVNIPTAKSL-FKPLLLLRIIHDIKSSASRNAK 451
L ++ D++ L + K+++ + P P LL I++ + + K
Sbjct: 536 VLKRDHSYI-DTIGLGCVETHDKVRQSCIVAPHESHFHLVPHLLKEHINN-----TPDYK 589
Query: 452 ILVFVKSNEASIRLESLLHAMLGSGIIEDEYNMFLXXXXXXXXXXXXRKLIQEFASSEQK 511
I+VF + + + +LL M + + ++ EF E
Sbjct: 590 IIVFCSTGMVTSLMYTLLREM----------KLNVREIHARKPQLHRTRVSDEF--KESN 637
Query: 512 KSVLISTDIMARGIDINEITHVINYDLPISSQQYVHRCGRTARANTEGIAINLLVGKGEQ 571
+ +L+++D+ ARG++ ++T VI +P +QY+HR GRT R G + LL+ E+
Sbjct: 638 RLILVTSDVSARGMNYPDVTLVIQVGIPSDREQYIHRLGRTGREGKGGEGL-LLIAPWER 696
Query: 572 KFWSQHIDTDL 582
F + D L
Sbjct: 697 YFLDELKDLPL 707
>At5g08610 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 827
Score = 98.6 bits (244), Expect = 3e-20
Identities = 117/507 (23%), Positives = 215/507 (42%), Gaps = 66/507 (13%)
Query: 94 LNRFQQTLSLQGALSASDK-----VSSDNDVHDEDVSMKDVHSLTPIPQPAKVTNEALKL 148
L + + LSL+ S+ D + + +D+ ED S +D + P+ + A
Sbjct: 283 LGKQTRGLSLEEEDSSDDDENRVGLGNIDDLPSEDSSDEDDENDEPLIKKAASAKAV--- 339
Query: 149 LDPSTYKSTAWDAATKIHYDSKMVKQFDSYEGELDARLLKNITSNFSSETFPIQTILFDK 208
T K T T Y SK +FD + L LK I F T++ +
Sbjct: 340 ---QTDKPTGEHVKTSDSYLSKT--RFDQFP--LSPLSLKAI----KDAGFETMTVVQEA 388
Query: 209 VLPLLNSSFKANRKLFTRRVGDILVNASTGSGKTLAYSVPLVQ-ILRSRTVNK------V 261
LP++ D+L A TG+GKT+A+ +P ++ +++S ++ +
Sbjct: 389 TLPIILQG------------KDVLAKAKTGTGKTVAFLLPAIEAVIKSPPASRDSRQPPI 436
Query: 262 RAIILVPTKILIHQ-VYDCLSKLSQGTSLNVSMSKLENSLKEEHNKFLYNSPDILIITPG 320
+++ PT+ L Q + + L S+ V + L E + N IL+ TPG
Sbjct: 437 IVLVVCPTRELASQAAAEANTLLKYHPSIGVQVVIGGTKLPTEQRRMQTNPCQILVATPG 496
Query: 321 RLVDHLQMES---FDLKTLKFLVLDEADRLLNQSFQNWNQVLFHHLTNDKQDKRPGNVIK 377
RL DH++ S L +K LVLDEAD LL+ F+ + + + +Q
Sbjct: 497 RLKDHIENTSGFATRLMGVKVLVLDEADHLLDMGFRRDIERIIAAVPKQRQ--------T 548
Query: 378 MVFSATLTTNAEKLYNLYLHNPKIFLTDSVKLYSIPKKLQELNVNIPTAKSLFKPLLLLR 437
+FSAT+ ++ ++ L F+ + + + + SL + LL
Sbjct: 549 FLFSATVPEEVRQICHVALKRDHEFIN---CVQEGSGETHQKVTQMYMIASLDRHFSLLH 605
Query: 438 IIHDIKSSASRNAKILVFVKSNEASIRLESLLHAMLGSGIIEDEYNMFLXXXXXXXXXXX 497
++ + + + K+++F + + + LL + ++ +
Sbjct: 606 VLLKEHIADNVDYKVIIFCTTAMVTRLVADLL----------SQLSLNVREIHSRKPQSY 655
Query: 498 XRKLIQEFASSEQKKSVLISTDIMARGIDINEITHVINYDLPISSQQYVHRCGRTARANT 557
++ EF S K +L+++D+ ARG+D +++ V+ LP +QY+HR GRT R
Sbjct: 656 RTRVSDEFRKS--KAIILVTSDVSARGVDYPDVSLVVQMGLPSDREQYIHRLGRTGRKGK 713
Query: 558 EGIAINLLVGKGEQKFWSQHIDTDLSR 584
EG + LL+ E+ F S D +++
Sbjct: 714 EGEGV-LLLAPWEEYFMSSVKDLPITK 739
>Hs13787209 [A] KOG0331 ATP-dependent RNA helicase
Length = 715
Score = 97.8 bits (242), Expect = 4e-20
Identities = 88/340 (25%), Positives = 153/340 (44%), Gaps = 33/340 (9%)
Query: 230 DILVNASTGSGKTLAYSVPLVQILRSRTVNKVRA-----IILVPTKILIHQVYDCLSKLS 284
D++ A TG+GKT ++++PL++ L ++ R ++L PT+ L +QV S ++
Sbjct: 157 DLIAQARTGTGKTFSFAIPLIEKLHGELQDRKRGRAPQVLVLAPTRELANQVSKDFSDIT 216
Query: 285 QGTSLNVSMSKLENSLKEEHNKFLYNSPDILIITPGRLVDHLQMESFDLKTLKFLVLDEA 344
+ S+ + E + N DIL+ TPGR+ DH+Q DL LK +VLDE
Sbjct: 217 KKLSVACFYGGTPYGGQFERMR---NGIDILVGTPGRIKDHIQNGKLDLTKLKHVVLDEV 273
Query: 345 DRLLNQSFQNW-NQVLFHHLTNDKQDKRPGNVIKMVFSATLTTNAEKLYNLYLHNPKIFL 403
D++L+ F + ++L D +D N ++FSAT + Y+ +
Sbjct: 274 DQMLDMGFADQVEEILSVAYKKDSED----NPQTLLFSATCPHWVFNVAKKYMKS----T 325
Query: 404 TDSVKLYSIPKKLQELNVNIPTAKSLFKPLLLLRIIHD-IKSSASRNAKILVFVKSNEAS 462
+ V L I KK Q+ + + +I D I+ + + ++F ++ + +
Sbjct: 326 YEQVDL--IGKKTQKTAITVEHLAIKCHWTQRAAVIGDVIRVYSGHQGRTIIFCETKKEA 383
Query: 463 IRLESLLHAMLGSGIIEDEYNMFLXXXXXXXXXXXXRKLIQEFASSEQKKSVLISTDIMA 522
L S I +D ++ ++ I VL++T++ A
Sbjct: 384 QELSQ------NSAIKQDAQSL-------HGDIPQKQREITLKGFRNGSFGVLVATNVAA 430
Query: 523 RGIDINEITHVINYDLPISSQQYVHRCGRTARANTEGIAI 562
RG+DI E+ VI P + Y+HR GRT RA G+ I
Sbjct: 431 RGLDIPEVDLVIQSSPPKDVESYIHRSGRTGRAGRTGVCI 470
>ECU02g1520 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 involved in
rRNA maturation DEAD-box superfamily
Length = 425
Score = 96.7 bits (239), Expect = 1e-19
Identities = 83/347 (23%), Positives = 166/347 (46%), Gaps = 57/347 (16%)
Query: 230 DILVNASTGSGKTLAYSVPLVQILRSRTVNKVRAIILVPTKILIHQVYDCLSKLSQGTSL 289
+++V + +G+GKT+AY+ ++ ++ + + +++ PT+ L QV + +S L+ +
Sbjct: 90 NVVVQSKSGTGKTIAYTCGVLG--NTKIGERTQVMVVTPTRELSTQVTEVISGLAGPLGI 147
Query: 290 NVSMSKLENSLKEEHNKFLYNSPDILIITPGRLVDHLQMESFDLKTLKFLVLDEADRLLN 349
V S L+N + + + ++++ +PG ++ +++ + K +K +VLDEAD LL+
Sbjct: 148 KV-FSALKNKITDSIGE------EVVVGSPGTILKLMELGKLNYKGVKMIVLDEADILLD 200
Query: 350 QSFQNWNQVLFHHLTNDKQDKRPGNVIKMVFSATLTTNAEKLYNLY------LHNPKIFL 403
+ L + Q + FSAT + ++ Y ++ +
Sbjct: 201 KDMMGTQTFRILKLISGAQ--------MIFFSATFSEQVKQTIEFYAPDAVKMYEERNGK 252
Query: 404 TDSVKLYSIPKKLQELNVNIPTAKSLFKPLLLLRIIHDIKSSASRNAKILVFVKSNEASI 463
D +KL+ I + + + KSL++ L + ++I + + A+ N K E +
Sbjct: 253 PDEIKLFYIEAEGENKRRAL---KSLYEYLSISQMIIFVSTKATVN----YLRKKLEDDL 305
Query: 464 RLESLLHAMLGSGIIEDEYNMFLXXXXXXXXXXXXRKLIQEFASSEQKKSVLISTDIMAR 523
S LH L IE+ K + +F SS+ K +L++TD+ +R
Sbjct: 306 HSVSCLHGDLE---IEER-----------------EKAVGDFRSSKSK--ILLTTDVFSR 343
Query: 524 GIDINEITHVINYDLPI-----SSQQYVHRCGRTARANTEGIAINLL 565
G+DI ++ ++NYDLPI S+Q Y+HR GR+ R G ++ +
Sbjct: 344 GMDIPQVNLIVNYDLPIYRGVASTQTYIHRIGRSGRFGRTGFVVDFV 390
>7302399 [A] KOG0347 RNA helicase
Length = 813
Score = 96.7 bits (239), Expect = 1e-19
Identities = 114/419 (27%), Positives = 180/419 (42%), Gaps = 94/419 (22%)
Query: 230 DILVNASTGSGKTLAYSVPL---VQILRSRTVN-------KVRA---------------- 263
DIL A TGSGKTLA+ +P+ + L+ R + KV+
Sbjct: 255 DILGAAETGSGKTLAFGIPMLAGIMELKQRNIRSGIRKAPKVKGQQPEPAADEHELTPPP 314
Query: 264 -----------------------------IILVPTKILIHQVYDCLSKLSQGTSLNVSMS 294
++L PT+ L QV + L ++ T + V+ +
Sbjct: 315 EELDHVSGASDEESDAEEQAQRVQTPLYGLVLTPTRELAVQVKNHLVAAAKYTGIRVA-A 373
Query: 295 KLENSLKEEHNKFLYNSPDILIITPGRLVDHLQMESFDL---KTLKFLVLDEADRLLNQS 351
+ + L PDI++ TPGRL + + L + + FLV+DE DR++ +
Sbjct: 374 IFGGLAVAKQERVLRQCPDIVVATPGRLWELYAQGNRHLGKIEDVSFLVIDETDRMVEKG 433
Query: 352 FQNWNQVLFHHLTNDKQDKRPGNVIKMVFSATLTTNAEKLYNLYLHN----PKIFLTDSV 407
+ L L +D+Q K V+SATLT + ++ N PK F+ +V
Sbjct: 434 HFEELRSLLKVLNSDEQKKHQRQ--NFVYSATLTLVHDLPDHMQKRNVGKRPK-FVKQTV 490
Query: 408 KLYSIPKKLQELNVNIP----------TAKSLFKPLLLLRIIHD---IKSSASRN-AKIL 453
I ++EL ++ P TA++L + LL I H + R+ + +
Sbjct: 491 D-QKIESLIEELGISQPKIVDITSSQQTAQTLTESRLLCPIDHKDYHLYYFIQRHPGRTI 549
Query: 454 VFVKSNEASIRLESLLHAMLGSGIIEDEYNMFLXXXXXXXXXXXXRKLIQEFASSEQKKS 513
VF S + RL +L +L + NM K ++ F S
Sbjct: 550 VFCNSIDCVKRLATLF-GLLDCNPLPLHANMIQKQRL---------KNLERFRDSPT--G 597
Query: 514 VLISTDIMARGIDINEITHVINYDLPISSQQYVHRCGRTARANTEGIAINLLVGKGEQK 572
+LI+TD+ ARG+DI + HVI+Y +P +S+ YVHR GRTARAN GI + + + GE K
Sbjct: 598 LLIATDVAARGLDIPNVEHVIHYQVPRTSENYVHRSGRTARANKHGITV-MFMEPGEVK 655
>SPBC776.09 [A] KOG0326 ATP-dependent RNA helicase
Length = 485
Score = 95.9 bits (237), Expect = 2e-19
Identities = 87/366 (23%), Positives = 164/366 (44%), Gaps = 41/366 (11%)
Query: 230 DILVNASTGSGKTLAYSVPLVQILRSRTVNKVRAIILVPTKILIHQVYDCLSKLSQGTSL 289
DIL A G+GKT A+ +P ++ + ++ +K++ +ILVPT+ L Q L + ++
Sbjct: 83 DILARAKNGTGKTAAFVIPSLEKVDTKK-SKIQTLILVPTRELALQTSQVCKTLGKHMNV 141
Query: 290 NVSMSKLENSLKEEHNKFLYNSPDILIITPGRLVDHLQMESFDLKTLKFLVLDEADRLLN 349
V ++ +L+++ + L ++ I++ TPGR++D D V+DEAD+LL+
Sbjct: 142 KVMVTTGGTTLRDDIIR-LNDTVHIVVGTPGRVLDLAGKGVADFSECTTFVMDEADKLLS 200
Query: 350 QSFQNWNQVLFHHLTNDKQDKRPGNVIKMVFSATLTTNAEKLYNLYLHNP-KIFLTDSVK 408
F + L + ++Q ++SAT + + +L+ P +I L D +
Sbjct: 201 PEFTPIIEQLLSYFPKNRQIS--------LYSATFPLIVKNFMDKHLNKPYEINLMDELT 252
Query: 409 LYSIPK--KLQELNVNIPTAKSLFKPLLLLRIIHDIKSSASRNAKILVFVKSNEASIRLE 466
L + + + + + +LF L + N I+ +N
Sbjct: 253 LRGVTQYYAFVDESQKVHCLNTLFSKLQI-------------NQSIIFCNSTNRVE---- 295
Query: 467 SLLHAMLGSGIIEDEYNMFLXXXXXXXXXXXXRKLIQEFASSEQKKSVLISTDIMARGID 526
+L I E Y+ F ++ F + + L+ +D++ RGID
Sbjct: 296 -----LLAKKITELGYSCF--YSHAKMLQSHRNRVFHNFRNGVCRN--LVCSDLLTRGID 346
Query: 527 INEITHVINYDLPISSQQYVHRCGRTARANTEGIAINLLVGKGEQKFWSQHIDTDLSRDI 586
I + VIN+D P +++ Y+HR GR+ R G+AI+ + +F I+ +L +I
Sbjct: 347 IQAVNVVINFDFPKNAETYLHRIGRSGRFGHRGLAISFI--SWADRFNLYRIENELGTEI 404
Query: 587 DGYQPS 592
PS
Sbjct: 405 QPIPPS 410
>7294824 [K] KOG4284 DEAD box protein
Length = 1028
Score = 95.9 bits (237), Expect = 2e-19
Identities = 92/391 (23%), Positives = 164/391 (41%), Gaps = 37/391 (9%)
Query: 183 DARLLKNITSNFSSETFPIQTILFDKVLPLLNSSFKANRKLFTRRVGDILVNASTGSGKT 242
+ RL +N+ + F T + +P+ + D+++ + +G+GKT
Sbjct: 29 ELRLYRNLLNGLKRNNFVTPTKIQAAAIPMALAKM------------DLIIQSKSGTGKT 76
Query: 243 LAYSVPLVQILRSRTVNKVRAIILVPTKILIHQVYDCLSKLSQGTSLNVSMSKLENSLKE 302
L Y + +VQ +N+ A+I+VPT+ L QV D L + + S
Sbjct: 77 LIYVIAVVQSFNPN-INQPHAMIVVPTRELAIQVQDTFFHLCKSFR-DFKCSAFIGGTDV 134
Query: 303 EHNKFLYNSPDILIITPGRLVDHLQMESFDLKTLKFLVLDEADRLLNQSFQNWNQVLFHH 362
++ N ++I TPGRL+ + FD+ L+ LVLDEAD+L + H
Sbjct: 135 AKDRKRMNESRVIIGTPGRLLHLYENRVFDVSKLRLLVLDEADQL-------YQTKSLQH 187
Query: 363 LTNDKQDKRPGNVIKMVFSATLTTNAEKLYNLYLHNPKIFLTDSVKLYSIPKKLQELNVN 422
+ + P N + SAT N ++ + P L + + ++ +++
Sbjct: 188 TVSKLIEAMPKNRQIIACSATYDQNLDERLAKVMDKP--MLISNSERATVLLGIRQFVYE 245
Query: 423 IPTAKSLFKPL-LLLRIIHDIKSSASRNAKILVFVKSNEASIRLESLLHAMLGSGIIEDE 481
+P + + + L L+I+ I + + ++F S +R +S + + SGI
Sbjct: 246 LPQQNNSVEEMRLKLQILGQIFNQLPYE-QAIIFASS---QMRADSYKNYLTASGIDCHL 301
Query: 482 YNMFLXXXXXXXXXXXXRKLIQEFASSEQKKSVLISTDIMARGIDINEITHVINYDLPIS 541
+ + R +L++TD+MARG+D VIN D P
Sbjct: 302 ISGAMEQSERLHVFEGYRNFTMR---------ILVATDLMARGVDSPHANLVINIDPPQD 352
Query: 542 SQQYVHRCGRTARANTEGIAINLLVGKGEQK 572
Y+HR GR R ++GIAI + K E +
Sbjct: 353 HVTYLHRIGRAGRFGSKGIAITFIASKKESQ 383
>YGL064c [A] KOG0335 ATP-dependent RNA helicase
Length = 561
Score = 95.5 bits (236), Expect = 2e-19
Identities = 113/435 (25%), Positives = 185/435 (41%), Gaps = 83/435 (19%)
Query: 200 PIQTILFDKVLPLLNSSFKANRKLFTRRVGDILVNASTGSGKTLAYSVPLVQILRSR--- 256
PIQT+ ++ ++ L ++ + A TGSGKT+AY +PL+ L+ +
Sbjct: 139 PIQTVAIKRI----------SKNLMDPKLQIHAIAAETGSGKTMAYLIPLIDYLKRQELE 188
Query: 257 ------TVNK---VRAIILVPTKILIHQVYDCLSKLSQGTSLNVSMSKLENSLKEEHNKF 307
T+ K +R+IILVPT L+ QVY+ +SK LN S ++
Sbjct: 189 TPELWETLRKNVLIRSIILVPTHELVDQVYETVSKTKTLLGLNSFKWDKATSYRDLLEN- 247
Query: 308 LYNSPDILIITPGRLVDHLQMESFD-----LKTLKFLVLDEADRLLNQSFQNWNQVLFHH 362
+ N DIL+ TPG+L++ + L + F+VLDEAD LL++S W +
Sbjct: 248 IKNRIDILVTTPGKLLNLFSIRMITRPDKVLSKVGFVVLDEADTLLDRS---WLEETHSA 304
Query: 363 LTNDKQDKRPGNVIKMVF-SATLTTNAEK-LYNLYLHNPKIFLTDSVKLYSIPKKLQELN 420
+ KR N+ ++F SAT+ K + L+ P + + +L+ +P L
Sbjct: 305 I------KRIPNINHLIFCSATIPQEFNKTMQRLF---PTVVPIMTPRLHKLPFALDFKV 355
Query: 421 VN---IPTAKSLFKPLL-LLRIIHDIKSSASRNAKILVFVKSNEASIRLESLLHAMLGSG 476
+N P S K L L I + + + ++FV + + +LL+ G
Sbjct: 356 INSALSPFKGSKIKALAQTLYAISNDDTEPGFEKRCIIFVNEKKNVPEIVNLLNKKFGHN 415
Query: 477 II----EDEYN-------MFLX----XXXXXXXXXXXRKLIQEF---------------- 505
I ED + FL +++F
Sbjct: 416 AIGLTGEDTFEERSEKIMPFLSPPRPLSEVVAQSTSPPTSLKKFEIPDSNIVIGKLKNTN 475
Query: 506 ----ASSEQKKSVLISTDIMARGIDINEITHVINYDLPISSQQYVHRCGRTARANTEGIA 561
A S + VL++TD+MARG++ + +V+ YD+P +S +HR GRTAR G
Sbjct: 476 SNGTAPSNKSLHVLVTTDLMARGLNFKGVRNVVLYDVPKTSIDLIHRVGRTARMKQGGRV 535
Query: 562 INLLVGKGEQKFWSQ 576
L K K W++
Sbjct: 536 FMLTDSK--TKSWAK 548
>At4g33370 [A] KOG0341 DEAD-box protein abstrakt
Length = 542
Score = 94.7 bits (234), Expect = 4e-19
Identities = 88/352 (25%), Positives = 160/352 (45%), Gaps = 51/352 (14%)
Query: 230 DILVNASTGSGKTLAYSVPLVQI-LRSRTVNKVRA------IILVPTKILIHQVYDCL-- 280
D++ A TGSGKTL + +P++ + L+ + + A +++ P++ L Q YD +
Sbjct: 136 DMIGIAFTGSGKTLVFVLPMIILALQEEIMMPIAAGEGPIALVICPSRELAKQTYDVVEQ 195
Query: 281 ---SKLSQGTSLNVSMSKLENSLKEEHNKFLYNSPDILIITPGRLVDHLQMESFDLKTLK 337
S + G S+ + + I++ TPGRL D L + L +
Sbjct: 196 FVASLVEDGYPRLRSLLCIGGVDMRSQLDVVKKGVHIVVATPGRLKDILAKKKMSLDACR 255
Query: 338 FLVLDEADRLLNQSFQNWNQVLFHHLTNDKQDKRPGNVIKMVFSATLTTNAEKLYNLYLH 397
L LDEADRL++ F++ + +F H + +Q ++FSAT+ +
Sbjct: 256 LLTLDEADRLVDLGFEDDIRHVFDHFKSQRQT--------LLFSATMPAKIQ-------- 299
Query: 398 NPKIFLTDSVKLYSIPKKLQELNVNIPTAKSLFKPLLLLRIIHDIKSSASRNAKILVFVK 457
IF T ++ ++ + VN+ A + L +I +++ + AKI+ ++
Sbjct: 300 ---IFATSAL--------VKPVTVNVGRAGAAN-----LDVIQEVEY-VKQEAKIVYLLE 342
Query: 458 SNEASIRLESLLHAMLGSGIIEDEYNMFLXXXXXXXXXXXXR-KLIQEFASS---EQKKS 513
+ + +L ++D + L + + +++A S KK
Sbjct: 343 CLQKTT--PPVLIFCENKADVDDIHEYLLLKGVEAVAIHGGKDQEDRDYAISLFKAGKKD 400
Query: 514 VLISTDIMARGIDINEITHVINYDLPISSQQYVHRCGRTARANTEGIAINLL 565
VL++TD+ ++G+D +I HVINYD+P + YVHR GRT R GIA +
Sbjct: 401 VLVATDVASKGLDFPDIQHVINYDMPGEIENYVHRIGRTGRCGKTGIATTFI 452
>7296891 [A] KOG0341 DEAD-box protein abstrakt
Length = 619
Score = 94.4 bits (233), Expect = 5e-19
Identities = 83/355 (23%), Positives = 148/355 (41%), Gaps = 45/355 (12%)
Query: 230 DILVNASTGSGKTLAYSVPLVQILRSRTVNKV-------RAIILVPTKILIHQVYDCLSK 282
D++ A TGSGKTL + +P++ + + +I+ P++ L Q ++ +
Sbjct: 216 DLIGIAFTGSGKTLVFVLPVIMFALEQEYSLPFERNEGPYGLIICPSRELAKQTHEIIQH 275
Query: 283 LSQGTSLNVSMSKLENSLK------EEHNKFLYNSPDILIITPGRLVDHLQMESFDLKTL 336
S+ M ++ + L E + I++ TPGRL+D L + L
Sbjct: 276 YSKHLQA-CGMPEIRSCLAMGGLPVSEALDVISRGVHIVVATPGRLMDMLDKKILTLDMC 334
Query: 337 KFLVLDEADRLLNQSFQNWNQVLFHHLTNDKQDKRPGNVIKMVFSATLTTNAEKLYNLYL 396
++L +DEADR+++ F+ + +F +Q ++FSAT+ + L
Sbjct: 335 RYLCMDEADRMIDMGFEEDVRTIFSFFKGQRQT--------LLFSATMPKKIQNFARSAL 386
Query: 397 HNPKIFLTDSVKLYSIPKKLQELNVNIPTAKSLFKPLLLLRIIHDIKSSASRNAKILVFV 456
P S+ + + K K + LL + A+ V
Sbjct: 387 VKPVTINVGRAGAASM-----NVTQQVEYVKQEAKVVYLLDCLQKTAPPVLIFAEKKQDV 441
Query: 457 KSNEASIRLESLLHAMLGSGIIEDEYNMFLXXXXXXXXXXXXRKLIQEFASSEQKKSVLI 516
+ L+ + + G ++E + + A KK VL+
Sbjct: 442 DCIHEYLLLKGVEAVAIHGGKDQEERSRAVD------------------AYRVGKKDVLV 483
Query: 517 STDIMARGIDINEITHVINYDLPISSQQYVHRCGRTARANTEGIAINLLVGKGEQ 571
+TD+ ++G+D + HVINYD+P + YVHR GRT R+NT+G+A L+ EQ
Sbjct: 484 ATDVASKGLDFPNVQHVINYDMPDDIENYVHRIGRTGRSNTKGLATTLINKTTEQ 538
>Hs9966805 [A] KOG0347 RNA helicase
Length = 859
Score = 92.8 bits (229), Expect = 1e-18
Identities = 87/327 (26%), Positives = 150/327 (45%), Gaps = 51/327 (15%)
Query: 264 IILVPTKILIHQVYDCLSKLSQGTSLNVSMSKLENSLKEEHNKFLYNSPDILIITPGRLV 323
++L PT+ L QV + +++ T + ++ + ++ + L P+I++ TPGRL
Sbjct: 391 LVLTPTRELAVQVKQHIDAVARFTGIKTAIL-VGGMSTQKQQRMLNRRPEIVVATPGRLW 449
Query: 324 DHLQMESF---DLKTLKFLVLDEADRLLNQS-FQNWNQVLFHHLTNDKQDKRPGNVIKMV 379
+ ++ + + +L+ L+ LV+DEADR++ + F +Q+L + ND Q + V
Sbjct: 450 ELIKEKHYHLRNLRQLRCLVVDEADRMVEKGHFAELSQLL--EMLNDSQYNPKRQTL--V 505
Query: 380 FSATLTT---------------NAEKLYNLYLHNPKIFLTDSVKLYSIPKK------LQE 418
FSATLT +K L L KI + K+ + + L E
Sbjct: 506 FSATLTLVHQAPARILHKKHTKKMDKTAKLDLLMQKIGMRGKPKVIDLTRNEATVETLTE 565
Query: 419 LNVNIPTAKSLFKPLLLLRIIHDIKSSASRNAKILVFVKSNEASIRLESLLHAMLGSGII 478
++ T + F L + LVF S RL LL +
Sbjct: 566 TKIHCETDEKDFYLYYFLM---------QYPGRSLVFANSISCIKRLSGLLKVL------ 610
Query: 479 EDEYNMFLXXXXXXXXXXXXRKLIQEFASSEQKKSVLISTDIMARGIDINEITHVINYDL 538
++ + +++FA E VL++TD+ ARG+DI ++ HVI+Y +
Sbjct: 611 ----DIMPLTLHACMHQKQRLRNLEQFARLED--CVLLATDVAARGLDIPKVQHVIHYQV 664
Query: 539 PISSQQYVHRCGRTARANTEGIAINLL 565
P +S+ YVHR GRTARA EG+++ L+
Sbjct: 665 PRTSEIYVHRSGRTARATNEGLSLMLI 691
>At2g07750 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 845
Score = 92.8 bits (229), Expect = 1e-18
Identities = 98/371 (26%), Positives = 170/371 (45%), Gaps = 48/371 (12%)
Query: 230 DILVNASTGSGKTLAYSVPLVQIL-----RSRTVNKVRAI---ILVPTKILIHQVY---D 278
D LV A TG+GK++A+ +P ++ + + V+KV I IL PT+ L Q+
Sbjct: 414 DALVKAKTGTGKSMAFLLPAIETVLKAMNSGKGVHKVAPIFVLILCPTRELASQIAAEGK 473
Query: 279 CLSKLSQGTSLNVSMSKLENSLKEEHNKFLYNSP-DILIITPGRLVDHLQMES---FDLK 334
L K G + + L ++ L + P ILI TPGRL+DH++ +S L
Sbjct: 474 ALLKNHDGIGVQTLIGGTRFRLDQQR---LESEPCQILIATPGRLLDHIENKSGLTSRLM 530
Query: 335 TLKFLVLDEADRLLNQSFQNWNQVLFHHLTNDKQDKRPGNVIKMVFSATLTTNAEKLYNL 394
LK ++DEAD LL+ F+ + + L +Q ++FSAT+ ++ L
Sbjct: 531 ALKLFIVDEADLLLDLGFKRDVEKIIDCLPRQRQ--------SLLFSATIPKEVRRVSQL 582
Query: 395 YLHNPKIFLTDSVKLYSIP--KKLQELNVNIPTAKSL-FKPLLLLRIIHDIKSSASRNAK 451
L ++ D++ L + K+++ + P P LL I+++ + K
Sbjct: 583 VLKRDHSYI-DTIGLGCVETHDKVKQSCIVAPHESHFHLVPHLLKEHINNMP-----DYK 636
Query: 452 ILVFVKSNEASIRLESLLHAMLGSGIIEDEYNMFLXXXXXXXXXXXXRKLIQEFASSEQK 511
I+VF + + SL++ +L E + + + EF E
Sbjct: 637 IIVFCSTG----MVTSLMYTLL------REMKLNVREIHARKPQLHRTCVSDEF--KESN 684
Query: 512 KSVLISTDIMARGIDINEITHVINYDLPISSQQYVHRCGRTARANTEGIAINLLVGKGEQ 571
+ +L+++D+ ARG++ ++T VI +P +QY+HR GRT R G + LL+ E+
Sbjct: 685 RLILVTSDVSARGMNYPDVTLVIQVGIPSDREQYIHRLGRTGREGKGGKGL-LLIAPWER 743
Query: 572 KFWSQHIDTDL 582
F + D L
Sbjct: 744 YFLDELKDLPL 754
>Hs20336298 [A] KOG0348 ATP-dependent RNA helicase
Length = 585
Score = 92.4 bits (228), Expect = 2e-18
Identities = 61/176 (34%), Positives = 98/176 (55%), Gaps = 11/176 (6%)
Query: 230 DILVNASTGSGKTLAYSVPLVQILRSRTVNKVR-----AIILVPTKILIHQVYDCLSKLS 284
D LV + TGSGKTLAY +P+VQ L++ R A++LVPT+ L Q +D + KL
Sbjct: 270 DALVRSQTGSGKTLAYCIPVVQSLQAMESKIQRSDGPYALVLVPTRELALQSFDTVQKLL 329
Query: 285 QGTSLNVSMSKLENSLKEEHNKFLYNSPDILIITPGRLVDHLQ-MESFDLKTLKFLVLDE 343
+ + V + ++ L +ILI TPGRLVDH++ ++ L++LV DE
Sbjct: 330 KPFTWIVPGVLMGGEKRKSEKARLRKGINILISTPGRLVDHIKSTKNIHFSRLRWLVFDE 389
Query: 344 ADRLLNQSFQNWNQVLFHHLTNDKQDKRPGNVIKMVFSATLTTNAEKLYNLYLHNP 399
ADR+L+ F+ V+ + + + Q ++ ++ SATLT +L ++ LH+P
Sbjct: 390 ADRILDLGFEKDITVILNAVNAECQKRQ-----NVLLSATLTEGVTRLADISLHDP 440
>At5g08620 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 563
Score = 92.4 bits (228), Expect = 2e-18
Identities = 113/477 (23%), Positives = 202/477 (41%), Gaps = 73/477 (15%)
Query: 169 SKMVKQFDSY--EGELDARLLKNIT-SNFSSETFPIQTILFDKVLPLLNSSFKANRKLFT 225
+++ K DSY + D L +T F T++ + LPL+
Sbjct: 67 TQIAKTSDSYLSKTRFDQFPLSPLTLKGIEDAGFKTMTVVQEATLPLILQG--------- 117
Query: 226 RRVGDILVNASTGSGKTLAYSVPLVQIL-------RSRTVNKVRAIILVPTKILIHQ-VY 277
DIL A TG+GKT+A+ +P ++ + R + +++ PT+ L Q
Sbjct: 118 ---KDILAKAKTGTGKTVAFLLPSIEAVIKAPPASRDNRHPPIIVLVVCPTRELACQAAA 174
Query: 278 DCLSKLSQGTSLNVSMSKLENSLKEEHNKFLYNSPDILIITPGRLVDHLQMES---FDLK 334
+ L S+ V + L E + + IL+ TPGRL DH+ S L
Sbjct: 175 EANILLKYHPSIGVQVVIGGTKLPTEQRRLQKSPCQILVATPGRLKDHIDNTSGFATRLM 234
Query: 335 TLKFLVLDEADRLLNQSFQNWNQVLFHHLTNDKQDKRPGNVIKMVFSATLTTNAEKLYNL 394
+K LVLDEAD LL+ F+ + + + +Q +FSAT++ ++ ++
Sbjct: 235 GVKVLVLDEADHLLDMGFRREIERIIAAVPKQRQ--------TFLFSATVSDEVRQICHV 286
Query: 395 YLHNPKIFLTDSVK-LYSIPKKLQELNV--NIPTAKSLFKPLLLLRIIHDIKSSASRNAK 451
L F+ + +K+ ++ + ++ SL LL I ++ K
Sbjct: 287 ALKRDHEFVNCVQEGAGETHQKVSQMYMIASLDRHFSLLYGLLKKHITDNV------GYK 340
Query: 452 ILVFVKSNEASIRLESLLHAMLGSGIIEDEYNMFLXXXXXXXXXXXXRKLIQEFASSEQK 511
+++F + + L+ +LG + ++ + ++ EF S K
Sbjct: 341 VIIFC----TTAMVTRLVADLLG------KLSLNVREIHSRKPQSYRTRVSDEFRKS--K 388
Query: 512 KSVLISTDIMARGIDINEITHVINYDLPISSQQYVHRCGRTARANTEGIAINLLVGKGEQ 571
+L+++D+ ARG+D +++ V+ LP +QY+HR GRT R EG + LL+ E+
Sbjct: 389 SIILVTSDVSARGVDYPDVSLVVQMGLPSDREQYIHRLGRTGRKGKEGEGV-LLLAPWEE 447
Query: 572 KFWSQHIDTDLSRDIDGYQPSAYLDEEKLSELFSIE-DTLKDTYKGCIKQLQTSKEA 627
F S D +++ S L I+ + +K KG I+ T+KEA
Sbjct: 448 YFLSSVKDLPITK----------------SSLPPIDHEAVKKVQKGLIQVEMTNKEA 488
>ECU07g1060 [A] KOG0344 ATP-dependent RNA helicase
Length = 416
Score = 89.0 bits (219), Expect = 2e-17
Identities = 95/357 (26%), Positives = 155/357 (42%), Gaps = 79/357 (22%)
Query: 230 DILVNASTGSGKTLAYSVPLVQILRSRTVNKVRAIILVPTKILIHQVYDCLSKLS----- 284
+++V A TGSGKTL+Y +PLV++ R R++ ILVP K L+ QVY + ++
Sbjct: 64 NVIVQAFTGSGKTLSYCLPLVEMARGRSLF---GAILVPGKPLVRQVYRVVREIKHEGLK 120
Query: 285 ---------------QGTSLNVSMSKLENSLKEEHNKFLYNSPDILIITPGRLVDHLQME 329
+G + +++ ++E + L S +LI TP ++ + M
Sbjct: 121 VVGVYGDGREDFLVEEGEKGELVQKAIDDKMRERIAESLRASARVLIGTPRSVLGLMSMS 180
Query: 330 SFDLKTLKFLVLDEADRLLNQSFQNWNQVLFHHLTNDKQDKRPGNVIKMVFSATLTTNAE 389
+++ + LV+DEAD L+N + + + ++ FSAT+
Sbjct: 181 --EIRNVTHLVIDEADLLINPETVGVFASILSVIEME-------DIHISCFSATM----- 226
Query: 390 KLYNLYLHNPKIFLTDSVKLYSIPKKLQELNVNIPTAKSLFKPLLLLRIIHDIKSSASRN 449
N Y+ + K+ + K+L + T++ + K L LL+II D S +
Sbjct: 227 ---NEYVSEVIETVKSITKIRVVSKRLIDHEFVFGTSRKI-KHLSLLQIIADGIESPT-- 280
Query: 450 AKILVFVKSNEASIRLESLLHAML-------GSGIIEDEYNMFLXXXXXXXXXXXXRKLI 502
L+FVK + L LL GSG + D + +
Sbjct: 281 ---LIFVKDEKTGEALSMLLGKSAVYREDQEGSGEVLDGFRL------------------ 319
Query: 503 QEFASSEQKKSVLISTDIMARGIDINEITHVINYDLPISSQQYVHRCGRTARANTEG 559
+K L +TD ++RGID I VINYDLP + Q+VHR GR R N +G
Sbjct: 320 -------KKIWYLFTTDSLSRGIDFYNIRSVINYDLPSTKTQFVHRIGRINR-NCQG 368
>YOR046c [A] KOG0332 ATP-dependent RNA helicase
Length = 482
Score = 87.8 bits (216), Expect = 4e-17
Identities = 113/457 (24%), Positives = 194/457 (41%), Gaps = 69/457 (15%)
Query: 125 SMKDVHSLTPIPQPAKVTNEALKLLDPSTYKSTAWDAATKIHYDSKM--VKQFDSYEGEL 182
S+K L P + K E L+ S Y+ A + +S + K FD E L
Sbjct: 43 SIKPAEKLVPKVEEKKTKQEDSNLIS-SEYEVKVKLADIQADPNSPLYSAKSFD--ELGL 99
Query: 183 DARLLKNITSNFSSETFPIQTILFDKVLPLLNSSFKANRKLFTRRVGDILVNASTGSGKT 242
LLK I + + IQ ++ LPLL + N ++ + +G+GKT
Sbjct: 100 APELLKGIYAMKFQKPSKIQ----ERALPLLLHNPPRN----------MIAQSQSGTGKT 145
Query: 243 LAYSVPLVQILRSRTVNKVRAIILVPTKILIHQVYDCLSKLSQGTSLNVSMSKLENSLKE 302
A+S+ ++ + + +AI L P++ L Q + + ++ + T + S+L
Sbjct: 146 AAFSLTMLTRVNPEDASP-QAICLAPSRELARQTLEVVQEMGKFTKIT---SQLIVPDSF 201
Query: 303 EHNKFLYNSPDILIITPGRLVDHLQMESFDLKTLKFLVLDEADRLLNQSFQNWNQVLFHH 362
E NK + + +++ TPG ++D ++ + L+ +K VLDEAD +L+Q Q L
Sbjct: 202 EKNKQI--NAQVIVGTPGTVLDLMRRKLMQLQKIKIFVLDEADNMLDQ------QGLGDQ 253
Query: 363 LTNDKQDKRPGNVIKMVFSATLTTNAEKLYNLYLHNPKIFLTDSVKLYSIPKKLQELNVN 422
K+ P + ++FSAT + + N +LQ VN
Sbjct: 254 CIRVKRFL-PKDTQLVLFSATFADAVRQYAKKIVPNANTL------------ELQTNEVN 300
Query: 423 IPTAKSLFKPLLLLRIIHDIKSSASRNAKI-----LVFVKSNEASIRLESLLHAMLGSGI 477
+ K L+ D K+ A + + L+ + S+ + + + + G
Sbjct: 301 VDAIKQLYM---------DCKNEADKFDVLTELYGLMTIGSSIIFVATKKTANVLYGKLK 351
Query: 478 IEDEYNMFLXXXXXXXXXXXXRKLIQEFASSEQKKSVLISTDIMARGIDINEITHVINYD 537
E L +LI +F K VLI+T+++ARGIDI ++ V+NYD
Sbjct: 352 SEGHEVSILHGDLQTQERD---RLIDDFREGRSK--VLITTNVLARGIDIPTVSMVVNYD 406
Query: 538 LPISSQ------QYVHRCGRTARANTEGIAINLLVGK 568
LP + Y+HR GRT R +G+AI+ + K
Sbjct: 407 LPTLANGQADPATYIHRIGRTGRFGRKGVAISFVHDK 443
>At4g09730 [A] KOG0331 ATP-dependent RNA helicase
Length = 496
Score = 87.8 bits (216), Expect = 4e-17
Identities = 78/345 (22%), Positives = 154/345 (44%), Gaps = 48/345 (13%)
Query: 231 ILVNASTGSGKTLAYSVPLVQIL------------RSRTVNKVRAIILVPTKILIHQVYD 278
+++ + TGSGKTLAY +P+VQ+L + + R ++L PT+ L QV
Sbjct: 152 VVLGSHTGSGKTLAYLLPIVQVLSELMREDEANLGKKTKPRRPRTVVLCPTRELSEQV-- 209
Query: 279 CLSKLSQGTSLNVSMSKLENSLKEEHNKFLYNSPDILIITPGRLVDHLQMESFDLKTLKF 338
CL + + + ++ + + L N+ D+++ TPGR++ H++ + + +
Sbjct: 210 CLHQDYHHARFRSILVSGGSRIRPQEDS-LNNAIDMVVGTPGRILQHIEEGNMVYGDIAY 268
Query: 339 LVLDEADRLLNQSFQNWNQVLFHHLTNDKQDKRPGNVIKMVFSATLTTNAEKLYNLYLHN 398
LVLDEAD + ++ F + L IK+V +KL +
Sbjct: 269 LVLDEADTMFDRGFGPEIRKFLAPLNQH---------IKVVNEIVSFQAVQKLVDEEFQG 319
Query: 399 PKIFLTDSVKLYSIPKKLQELN---VNIPTAKSLFKPLLLLRIIHDIKSSASRNAKILVF 455
+ ++ ++ KK+ + + + + LL + ++ S ++ +K++VF
Sbjct: 320 -----IEHLRTSTLHKKIANARHDFIKLSGGEDKLEALLQV-----LEPSLAKGSKVMVF 369
Query: 456 VKSNEASIRLESLLHAMLGSGIIEDEYNMFLXXXXXXXXXXXXRKLIQEFASSEQKKSVL 515
+ +S ++ L E + + +++F E L
Sbjct: 370 CNTLNSSRAVDHYL----------SENQISTVNYHGEVPAEQRVENLKKFKDEEGDCPTL 419
Query: 516 ISTDIMARGIDINEITHVINYDLPISSQQYVHRCGRTARANTEGI 560
+ TD+ ARG+D+ ++ HV+ +D P +S Y+HR GRTAR +G+
Sbjct: 420 VCTDLAARGLDL-DVDHVVMFDFPKNSIDYLHRTGRTARMGAKGL 463
>At3g06980 [A] KOG0331 ATP-dependent RNA helicase
Length = 781
Score = 86.7 bits (213), Expect = 1e-16
Identities = 96/359 (26%), Positives = 148/359 (40%), Gaps = 43/359 (11%)
Query: 232 LVNASTGSGKTLAYSVPLVQILRSRTVNK--------VRAIILVPTKILIHQVY-DCLSK 282
++ +GSGKTLAY VP++Q LR + R I+LVPT L QV +C S
Sbjct: 415 IIADQSGSGKTLAYLVPVIQRLREEELQGHSKSSPGCPRVIVLVPTAELASQVLANCRSI 474
Query: 283 LSQGTSLNVSMSKLENSLKEEHNKFLYNSPDILIITPGRLVDHLQMESFDLKTLKFLVLD 342
G SM + + L D+LI TPGR + L L+ +LD
Sbjct: 475 SKSGVPFR-SMVVTGGFRQRTQLENLEQGVDVLIATPGRFTYLMNEGILGLSNLRCAILD 533
Query: 343 EADRLLNQSFQNWNQVLFHHLTNDKQDKRPGNVIKMVFSATLTTNA-EKLYNLYLHNPKI 401
E D L F + + P + +ATL KL ++ P
Sbjct: 534 EVDILFGDDE-------FEAALQNLINSSPVTAQYLFVTATLPLEIYNKLVEVF---PDC 583
Query: 402 FLTDSVKLYSIPKKLQELNVNIP-------TAKSLF--KPLLLLRIIHDIKSSASRNAKI 452
+ +++ + L+E V+ T ++ F K LL+I+ + S K
Sbjct: 584 EVVMGPRVHRVSNALEEFLVDCSGDDNAEKTPETAFQNKKTALLQIMEENPVS-----KT 638
Query: 453 LVFVKSNEASIRLESLLHAMLGSGIIEDEYNMFLXXXXXXXXXXXXRKLIQEFASS--EQ 510
++F E ++E++ + E + + +QEF SS E+
Sbjct: 639 IIFCNKIETCRKVENIFKR-----VDRKERQLHVLPFHAALSQESRLTNMQEFTSSQPEE 693
Query: 511 KKSVLISTDIMARGIDINEITHVINYDLPISSQQYVHRCGRTAR-ANTEGIAINLLVGK 568
L+ TD +RGID + + HV+ +D P +YV R GRTAR A +G A +VGK
Sbjct: 694 NSLFLVCTDRASRGIDFSGVDHVVLFDFPRDPSEYVRRVGRTARGARGKGKAFIFVVGK 752
>ECU09g1200 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 425
Score = 84.0 bits (206), Expect = 6e-16
Identities = 104/407 (25%), Positives = 176/407 (42%), Gaps = 49/407 (12%)
Query: 168 DSKMVKQFDSYEGE-LDARLLKNITS-NFSSETFPIQTILFDKVLPLLNSSFKANRKLFT 225
DS ++ FD++E L LLK I S F + +F I + P+++
Sbjct: 30 DSSQIRMFDTWEDYGLKEDLLKGIYSIGFETPSF----IQKAAIQPIIDGR--------- 76
Query: 226 RRVGDILVNASTGSGKTLAYSVPLVQIL-RSRTVNKVRAIILVPTKILIHQVYDCLSKLS 284
DI A +G+GKT A++V +QI S+ V ++ ++L T+ + Q L
Sbjct: 77 ----DIRAQAQSGTGKTGAFAVAALQICDMSQDVTQI--LVLASTREIAAQNAARFEDL- 129
Query: 285 QGTSLNVSMSKLENSLKEEHNKF-LYNSPDILIITPGRLVDHLQMESFDLKTLKFLVLDE 343
G + ++ L +K L P I++ TPGR+ + + + +K V+DE
Sbjct: 130 -GCFMGARVALLSGGSPIAADKVALEKKPHIVVGTPGRVEHMININELSMDNIKLFVIDE 188
Query: 344 ADRLLNQSFQNWNQVLFHHLTNDKQDKRPGNVIKMVFSATLTTNAEKLYNLYLHNPKI-- 401
AD +L FQ + +F +TN + V +FSAT ++ L NP I
Sbjct: 189 ADEMLKAGFQEQVKSIFRRITNKDE------VQIAMFSATYDEEELRVSEEILINPVIID 242
Query: 402 FLTDSVKLYSIPKKLQELNVNIPTAKSLFKPLL-LLRIIHDIKSSASRNAKILVFVKSNE 460
+ L I + +L P K LL L ++DI R + +VF+ S E
Sbjct: 243 LRYNDQTLKGIRQYFIDLRKEPPFRKGREDYLLPKLVTLYDI-FRKQRLGQSIVFINSKE 301
Query: 461 ASIRLESLLHAMLGSGIIEDEYNMFLXXXXXXXXXXXXRKLIQEFASSEQKKSVLISTDI 520
+ ++ +I E+ L + + F + LIS+ +
Sbjct: 302 DA--------RIVYDWLIRHEWECEL--ISAELTQAERERTLNRFRGGTGR--CLISSGL 349
Query: 521 MARGIDINEITHVINYDLPISSQQ--YVHRCGRTARANTEGIAINLL 565
++RGIDI ++ V D+P ++ Y+HR GR+ R +GIAIN++
Sbjct: 350 LSRGIDIQNLSVVFCLDVPSFERKSTYIHRIGRSGRYGRKGIAINIV 396
>At3g53110 [A] KOG0332 ATP-dependent RNA helicase
Length = 496
Score = 82.8 bits (203), Expect = 1e-15
Identities = 86/360 (23%), Positives = 156/360 (42%), Gaps = 53/360 (14%)
Query: 231 ILVNASTGSGKTLAYSVPLVQILRSRTVNKVRAIILVPTKILIHQVYDCLSKLSQGTSLN 290
++ A GSGKT + + ++ + T+ + +A+ + PT+ L +Q + L K+ + T +
Sbjct: 134 LIAQAHNGSGKTTCFVLGMLSRV-DPTLREPQALCICPTRELANQNMEVLQKMGKFTGIT 192
Query: 291 VSMSKLENSL-KEEHNKFLYNSPDILIITPGRLVDHLQMESFDLKTLKFLVLDEADRLL- 348
++ +++ + S ++I TPG L + + L LK LV DEAD +L
Sbjct: 193 AELAVPDSTRGAPAATRGAPVSAHVVIGTPGTLKKWMAFKRLGLNHLKILVFDEADHMLA 252
Query: 349 NQSFQNWNQVLFHHLTNDKQDKRPGNVIKMVFSATLTTNAEKLYNLYLHNP-KIFLT--- 404
F++ + + + N ++FSAT + + +P ++F+
Sbjct: 253 TDGFRDDSLKIMKDIGRVNP-----NFQVLLFSATFNETVKDFVARTVKDPNQLFVKRED 307
Query: 405 ---DSVKLYSI--PKKLQELNVNIPTAKSLFKPLLLLRIIHDIKSSASRNAKILVFVKSN 459
DSVK Y + PK+ ++ V I D + ++FVK+
Sbjct: 308 LALDSVKQYKVVCPKEQNKIEV-----------------IKDQIMELGDIGQTIIFVKTK 350
Query: 460 EASIRLESLLHAMLGSGIIEDEYNMFLXXXXXXXXXXXXRKLIQEFASSEQKKSVLISTD 519
++ ++ L A +G + N+ K+++EF E VLI+TD
Sbjct: 351 ASAQKVHKAL-AEMGYDVTSVHGNL---------TESDRDKIVKEF--KECLTQVLIATD 398
Query: 520 IMARGIDINEITHVINYDLPISSQQ-------YVHRCGRTARANTEGIAINLLVGKGEQK 572
++ARG D + V+NY+LP + Y+HR GR R +G NLL+ G K
Sbjct: 399 VIARGFDQQRVNLVVNYNLPTKYETGEPDYEVYLHRVGRAGRFGRKGAVFNLLLDDGWDK 458
>CE29052 [A] KOG0335 ATP-dependent RNA helicase
Length = 1156
Score = 82.4 bits (202), Expect = 2e-15
Identities = 82/347 (23%), Positives = 157/347 (44%), Gaps = 36/347 (10%)
Query: 230 DILVNASTGSGKTLAYSVPLV-----QILRSRTVN----KVRAIILVPTKILIHQVYDCL 280
D++ A TGSGKTLA+ +P V + + R V R +I+ PT+ L++Q +
Sbjct: 775 DVVACAHTGSGKTLAFLIPFVIKLMEEFEKDRDVTDEKPSPRLLIVAPTRELVNQTFTTA 834
Query: 281 SKLSQGTSLNVSMS--KLENSLKEEHNKFLYNSPDILIITPGRLVDHLQMESFDLKTLKF 338
+L+ T L ++ + +H + ++ +IL+ T GRL D + L +K+
Sbjct: 835 RQLTYETGLKCGLAFGGYSRNANVQHLRS-FSQLNILVATMGRLQDFVNAGEVSLSKMKY 893
Query: 339 LVLDEADRLLNQSFQNWNQVLFHHLTNDKQDKRPGNVIKMVFSATLTTNAEKLYNLYLHN 398
+VLDEADR+++ + ++ + + + + + + + FS L ++ L
Sbjct: 894 IVLDEADRMVDSN--DFGEEVSKIIGSPGERTQQTVLFSASFSEDL--QSDDLPKFVKEG 949
Query: 399 PKIFLTDSVKLYSIPKKLQELNVNIPTAKSLFKPLLLLRIIHD----IKSSASRNAKILV 454
+ D K + +K+ + + +P + LL I + + + K L+
Sbjct: 950 YTMLQVD--KFGTANEKIDQKILPVPRTEKRDAIYKLLGIDENTVTLLPDAPIEKQKTLI 1007
Query: 455 FVKSNEASIRLESLLHAMLGSGIIEDEYNMFLXXXXXXXXXXXXRKLIQEFASSEQKKSV 514
FV S + L +L+ + S I Y + + +F K
Sbjct: 1008 FVNSVKFCDTLAALISSAGVSTISMHSYQ----------NQEQRDRTLDDFRRG--KYQC 1055
Query: 515 LISTDIMARGIDINEITHVINYDLPISS--QQYVHRCGRTARANTEG 559
++++++ ARG++I + HV+NYD+P + +YV+R GRT RA G
Sbjct: 1056 MVASNVCARGLNIAGLDHVVNYDMPDKNGFDEYVNRIGRTGRAGFTG 1102
>At1g12770_1 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 543
Score = 81.6 bits (200), Expect = 3e-15
Identities = 87/380 (22%), Positives = 168/380 (43%), Gaps = 63/380 (16%)
Query: 230 DILVNASTGSGKTLAYSVPLVQIL-----RSRTVN-------KVRAIILVPTKILIHQVY 277
D ++ + TGSGKTLAY +P++ + +SR+ + +++A+I+ P++ L Q+
Sbjct: 149 DAVIQSYTGSGKTLAYLLPILSEIGPLAEKSRSSHSENDKRTEIQAMIVAPSRELGMQIV 208
Query: 278 DCLSKLSQGTSLNVSMSKLENSLKEEHNKFLY-NSPDILIITPGRLVDHLQMESFDLKTL 336
+ KL + + + + + L N P I++ TPGR+ + +
Sbjct: 209 REVEKLLGPVHRRMVQQLVGGANRMRQEEALKKNKPAIVVGTPGRIAEISKGGKLHTHGC 268
Query: 337 KFLVLDEADRLLNQSFQNWNQVLFHHL-------TNDKQDKRPGNVIKMVFSATLTTNAE 389
+FLVLDE D LL+ +F+ + H+ + D+R N ++ SAT+ +
Sbjct: 269 RFLVLDEVDELLSFNFREDIHRILEHVGKRSGAGPKGEVDER-ANRQTILVSATVPFSVI 327
Query: 390 KLYNLYLHNP------KIFLTDSVK----LYSIPKKLQELNVNIPTAKSLFKPLL----- 434
+ + H P K+ D+V+ + S+ E + I T P L
Sbjct: 328 RAAKSWSHEPVLVQANKVTPLDTVQPSAPVMSLTPTTSEADGQIQTTIQSLPPALKHYYC 387
Query: 435 ----------LLRIIHDIKSSASRNAKILVFVKSNEASIRLESLLHAMLGSGIIEDEYNM 484
L R +H + + + ++ F+ S +L+ +++ + G+ E +
Sbjct: 388 ISKHQHKVDTLRRCVHALDAQS-----VIAFMNH---SRQLKDVVYKLEARGMNSAEMHG 439
Query: 485 FLXXXXXXXXXXXXRKLIQEFASSEQKKSVLISTDIMARGIDINEITHVINYDLPISSQQ 544
L ++++F + E K VL++ ++ ARG+D+ E V+N +LP +
Sbjct: 440 DLGKLGRST-------VLKKFKNGEIK--VLVTNELSARGLDVAECDLVVNLELPTDAVH 490
Query: 545 YVHRCGRTARANTEGIAINL 564
Y HR GRT R +G + +
Sbjct: 491 YAHRAGRTGRLGRKGTVVTV 510
>At1g71280 [A] KOG0345 ATP-dependent RNA helicase
Length = 465
Score = 81.3 bits (199), Expect = 4e-15
Identities = 58/176 (32%), Positives = 95/176 (53%), Gaps = 21/176 (11%)
Query: 230 DILVNASTGSGKTLAYSVPLVQILRSRT-----VNKVRAIILVPTKILIHQVYDCLSKLS 284
D++V+A+TGSGKTLA+ +P ++I+R ++V +I+ PT+ L Q++ K++
Sbjct: 56 DVVVDAATGSGKTLAFLLPFIEIIRRSNSYPPKPHQVMGVIISPTRELSAQIH----KVA 111
Query: 285 QGTSLNVSMSKLENSLKEEHNKFLYNSPDILIITPGRLVDHL-QMESFDLKTLKFLVLDE 343
+ L+ + + ++ + N ++LI TPGRL D + +ME D + L+ L+LDE
Sbjct: 112 RAVRLDFAKCR---EVEADMNTLEEEGANLLIGTPGRLSDMMKRMEFLDFRNLEILILDE 168
Query: 344 ADRLLNQSFQNWNQVLFHHLTNDKQDKRPGNVIKMVFSATLTTNAEKLYNLYLHNP 399
ADRLL+ FQ + L + +R G +FSAT T L L NP
Sbjct: 169 ADRLLDMGFQKQVNYIISRL---PKQRRTG-----LFSATQTQAVADLAKAGLRNP 216
>At5g19210 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 430
Score = 80.9 bits (198), Expect = 5e-15
Identities = 91/367 (24%), Positives = 160/367 (42%), Gaps = 48/367 (13%)
Query: 238 GSGKTLAYSVPLVQILRSRTVNKVRAIILVPTKILIHQVYDCLSKLSQGTSLNVS----M 293
GSGKTL Y + + ++ + + V+A+I+VPT+ L QV L+ + ++V M
Sbjct: 81 GSGKTLTYLLLIFSLINPQR-SSVQAVIVVPTRELGMQVTKVARMLAAKSEIDVKGCTVM 139
Query: 294 SKLENSLKEEHNKFLYNSPD-ILIITPGRLVDHLQMESFDLKTLKFLVLDEADRLLNQSF 352
+ L+ H +L P IL+ T L L+ F + +++ LV+DE D L S
Sbjct: 140 ALLDGGTLRRHKSWLKAEPPAILVATVASLCHMLEKHIFRIDSVRVLVVDEVDFLFYSS- 198
Query: 353 QNWNQVLFHHLTNDKQDKRPGNVIKMVFSATLTTNAEKLY-NLYLHNPKIFLTDSVKLYS 411
K+ G+V K++ S + + ++ + + K F+ D ++
Sbjct: 199 -----------------KQVGSVRKLLTSFSSCDKRQTVFASASIPQHKHFVHDCIQ--- 238
Query: 412 IPKKLQELNVNIPTAKSLFKPLLLLR-------------IIHDIKSSASRNAKILVFVKS 458
K + V++ + + PL LL ++ ++S A +A I V +S
Sbjct: 239 -QKWTKRDVVHVHVSAIMPMPLCLLHRFVMCEKTNKHQVLLALLESDAPESAIIFVGEQS 297
Query: 459 NEASIRLESLLHAMLGSGIIEDEYNMFLXXXXXXXXXXXXRKLIQEFASSEQKKSVLIST 518
E S + + L ++ Y L + + +L+ST
Sbjct: 298 -EKSKKAGNDPSTTLLMEFLKTSYKGSLEILLLEGDMNFNSRAASLTEIRQGGGFLLVST 356
Query: 519 DIMARGIDINEITHVINYDLPISSQQYVHRCGRTAR---ANTEGIAINLLVGKGEQKFWS 575
DI ARGID+ E TH+ N+DLP + Y+HR GR R ++ + I NL+ E++F
Sbjct: 357 DIAARGIDLPETTHIFNFDLPQTVTDYLHRAGRAGRKPFSDRKCIVANLIT--SEERFVL 414
Query: 576 QHIDTDL 582
Q + +L
Sbjct: 415 QRYENEL 421
>Hs9506609 [A] KOG0340 ATP-dependent RNA helicase
Length = 257
Score = 76.6 bits (187), Expect = 1e-13
Identities = 59/176 (33%), Positives = 88/176 (49%), Gaps = 18/176 (10%)
Query: 230 DILVNASTGSGKTLAYSVPLVQILRSRTVNKVRAIILVPTKILIHQVYDCLSKLSQGTSL 289
D L A TGSGKT A+ +P++Q L S + ++L PT+ L +Q+ + L + L
Sbjct: 41 DCLGCAKTGSGKTAAFVLPILQKL-SEDPYGIFCLVLTPTRELAYQIAERFRVLGKPLGL 99
Query: 290 NV-----SMSKLENSLKEEHNKFLYNSPDILIITPGRLVDHLQMES-FDLKTLKFLVLDE 343
M + +L+ L P ++I TPGRL DHL+ + F +K ++FLV+DE
Sbjct: 100 KDCIIVGGMDMVAQALE------LSRKPHVVIATPGRLADHLRSSNTFSIKKIRFLVMDE 153
Query: 344 ADRLLNQSFQNWNQVLFHHLTNDKQDKRPGNVIKMVFSATLTTNAEKLYNLYLHNP 399
ADRLL Q ++ L L P ++FSATLT +L L + P
Sbjct: 154 ADRLLEQGCTDFTVDLEAILA-----AVPARRQTLLFSATLTDTLRELQGLATNQP 204
>Hs14251212 [K] KOG4284 DEAD box protein
Length = 824
Score = 76.6 bits (187), Expect = 1e-13
Identities = 83/351 (23%), Positives = 150/351 (42%), Gaps = 40/351 (11%)
Query: 230 DILVNASTGSGKTLAYSVPLVQILRSRTVNKVRAIILVPTKILIHQVYDCLSKLSQGTSL 289
D++V A +G+GKT +S + L ++ + +IL PT+ + Q++ + T++
Sbjct: 101 DLIVQAKSGTGKTCVFSTIALDSLVLENLS-TQILILAPTREIAVQIHSVI------TAI 153
Query: 290 NVSMSKLE-----NSLKEEHNKFLYNSPDILIITPGRLVDHLQMESFDLKTLKFLVLDEA 344
+ M LE +K I + +PGR+ ++++ + +++ +LDEA
Sbjct: 154 GIKMEGLECHVFIGGTPLSQDKTRLKKCHIAVGSPGRIKQLIELDYLNPGSIRLFILDEA 213
Query: 345 DRLLNQ-SFQNWNQVLFHHLTNDKQDKRPGNVIKMVFSATLTTNAEKLYNLYLHNPKIFL 403
D+LL + SFQ ++ L KQ + SAT Y+ +P
Sbjct: 214 DKLLEEGSFQEQINWIYSSLPASKQ--------MLAVSATYPEFLANALTKYMRDPTFVR 265
Query: 404 TDSVKLYSIPKKLQELNVN-IPTAKSLFKPLLLLRIIHDIKSSASRNAKILVFVKSNEAS 462
+S I K VN P A +F+ + + ++ S N + LVF + +
Sbjct: 266 LNSSDPSLIGLKQYYKVVNSYPLAHKVFEEKT--QHLQELFSRIPFN-QALVFSNLHSRA 322
Query: 463 IRLESLLHAM-LGSGIIEDEYNMFLXXXXXXXXXXXXRKLIQEFASSEQKKSVLISTDIM 521
L +L + + I N ++L VLISTD+
Sbjct: 323 QHLADILSSKGFPAECISGNMNQ-------------NQRLDAMAKLKHFHCRVLISTDLT 369
Query: 522 ARGIDINEITHVINYDLPISSQQYVHRCGRTARANTEGIAINLLVGKGEQK 572
+RGID ++ V+N D+P+ + Y+HR GR R T G+ + +GE++
Sbjct: 370 SRGIDAEKVNLVVNLDVPLDWETYMHRIGRAGRFGTLGLTVTYCC-RGEEE 419
>Hs4826688 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 439
Score = 75.9 bits (185), Expect = 2e-13
Identities = 81/335 (24%), Positives = 150/335 (44%), Gaps = 44/335 (13%)
Query: 235 ASTGSGKTLAYSVPLVQILRSRTVNKVRAIILVPTKILIHQVYDCLSKLSQGTSLNVSMS 294
A TG+GKTLA+ +P++ + + V + + +IL P++ L Q + G ++VS++
Sbjct: 39 APTGTGKTLAFLLPILSRIDPK-VKQTQVLILAPSQELAMQTTAVAREW--GALVDVSVT 95
Query: 295 KLENSL--KEEHNKFLYNSPDILIITPGRLVDHLQMESFDLKTLKFLVLDEADRLLNQSF 352
L + + +K + P I++ T GR++ L + L L+ ++ DEAD +L+
Sbjct: 96 SLIGGANGRRQADKLKKDKPHIVVGTLGRVLTMLDGGALKLNGLQTVIFDEADAMLSDER 155
Query: 353 QNWNQVLFHHLTNDKQDKRPGNVIKMVFSATLTTNAEKLYNLYLHNPKIFLTDSVKLYSI 412
++ Q L L D Q +FSAT + + + + + + + +I
Sbjct: 156 RDSLQALAAQLPTDVQ--------LGLFSATSGVDLKYVADTFGQEVRPVSVGTDAPAAI 207
Query: 413 PKKLQELNVNIPTAKSLFKPLLLLRIIHDIKSSASRNAKILVFVKSNEASIRLESLL--- 469
+ Q ++ K LL+++ A + LVF + + +++ L
Sbjct: 208 THEFQYVDQKA-------KASLLIQL-------ARNKQQALVFFNTISGLVNMQATLRHA 253
Query: 470 HAMLGSGIIEDEYNMFLXXXXXXXXXXXXRKLIQEFASSEQKKSVLISTDIMARGIDINE 529
HA + S D+ + ++ F E S+L+ TD+ ARG+DI +
Sbjct: 254 HASVMSIGSNDKRQV------------QRADALRLFKKGEV--SLLLVTDVAARGLDIED 299
Query: 530 ITHVINYDLPISSQQYVHRCGRTARANTEGIAINL 564
+ V+N LP + Y+HR GRT R G +NL
Sbjct: 300 LPLVVNAQLPQRKKTYIHRAGRTGRMGKPGRVLNL 334
>Hs20551983 [A] KOG0345 ATP-dependent RNA helicase
Length = 325
Score = 75.9 bits (185), Expect = 2e-13
Identities = 66/200 (33%), Positives = 98/200 (49%), Gaps = 20/200 (10%)
Query: 211 PLLNSSFKANRKLFTRRVGDILVNASTGSGKTLAYSVPLVQILRSR----TVNKVRAIIL 266
P + A LF R D+ A TGSGKTLA+ +P+++IL R ++V AII+
Sbjct: 30 PYMTPVQSATIPLFMRNK-DVAAEAVTGSGKTLAFVIPILEILLRREEKLKKSQVGAIII 88
Query: 267 VPTKILIHQVYDCLSKLSQG-TSLNVSMSKLENSLKEEHNKFLYNSPDILIITPGRLVD- 324
PT+ L Q+ + LS ++ + + + E+ +F +I++ TPGRL D
Sbjct: 89 TPTRELAIQIDEVLSHFTKHFPEFSQILWIGGRNPGEDVERFKQQGGNIIVATPGRLEDM 148
Query: 325 -HLQMESFDL----KTLKFLVLDEADRLLNQSFQNWNQVLFHHLTNDKQDKRPGNVIKMV 379
+ E DL ++L LVLDEADRLL+ F+ + L + +R G +
Sbjct: 149 FRRKAEGLDLASCVRSLDVLVLDEADRLLDMGFEASINTILEFL---PKQRRTG-----L 200
Query: 380 FSATLTTNAEKLYNLYLHNP 399
FSAT T E L L NP
Sbjct: 201 FSATQTQEVENLVRAGLRNP 220
>Hs6005743 [A] KOG0332 ATP-dependent RNA helicase
Length = 479
Score = 75.5 bits (184), Expect = 2e-13
Identities = 85/355 (23%), Positives = 154/355 (42%), Gaps = 57/355 (16%)
Query: 230 DILVNASTGSGKTLAYSVPLVQILRSRTVNKV-RAIILVPTKILIHQVYDCLSKLSQG-T 287
+++ + +G+GKT A+ L + + NK + + L PT L Q + ++ +
Sbjct: 133 NLIAQSQSGTGKTAAFV--LAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYP 190
Query: 288 SLNVSMSKLENSLKEEHNKFLYNSPDILIITPGRLVDHLQMESF-DLKTLKFLVLDEADR 346
L ++ + N L E K S I+I TPG ++D F D K +K VLDEAD
Sbjct: 191 ELKLAYAVRGNKL-ERGQKI---SEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADV 246
Query: 347 LLNQSFQNWNQVLFHHLTNDKQDKRPGNVIKMVFSATLTTNAEKLYNLYLHNPKIFLTDS 406
++ + + P N ++FSAT + K + +P +
Sbjct: 247 MIATQGHQDQSIRIQRML-------PRNCQMLLFSATFEDSVWKFAQKVVPDPNVI---- 295
Query: 407 VKLYSIPKKLQELNVNIPTAKSLFKPLLLLRIIHDIKSSASRN-------AKILVFVKSN 459
KL+ + T K + +L D K A N A+ ++F +
Sbjct: 296 --------KLKREEETLDTIKQYY----VLCSSRDEKFQALCNLYGAITIAQAMIFCHTR 343
Query: 460 EASIRLESLLHAMLGSGIIEDEYNMFLXXXXXXXXXXXXRKLIQEFASSEQKKSVLISTD 519
+ + + L + + ++ + + L +I+ F E K+ VL++T+
Sbjct: 344 KTA--------SWLAAELSKEGHQVALLSGEMMVEQRAA--VIERFR--EGKEKVLVTTN 391
Query: 520 IMARGIDINEITHVINYDLPI------SSQQYVHRCGRTARANTEGIAINLLVGK 568
+ ARGID+ +++ VIN+DLP+ ++ Y+HR GRT R G+A+N++ K
Sbjct: 392 VCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSK 446
>CE01338 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 363
Score = 74.3 bits (181), Expect = 5e-13
Identities = 82/370 (22%), Positives = 164/370 (44%), Gaps = 44/370 (11%)
Query: 230 DILVNASTGSGKTLAYSVPLVQILRSRTVNKVRAIILVPTKILIHQVYDCLSKLSQGTSL 289
D+ + + GSGKT+ + ++Q + + ++ I+L P + + + ++ L L G +L
Sbjct: 35 DVTIQSQAGSGKTVISLIDILQGIDCEDAH-LQVILLAPQRGMAQRAHEQLKSL--GRNL 91
Query: 290 NVSMSKLENSLKEEHNKFLYNSPDILIITPGRLVDHLQMESFDLKTLKFLVLDEADRLLN 349
NV+ + L E++K + +L+ TP D L D +K VLDEAD +L+
Sbjct: 92 NVNATCLGFDTTAENDKISH----VLMGTPK---DFLSNIPSDTSRIKMFVLDEADEMLS 144
Query: 350 QSFQNWNQVLFHHLTNDKQDKRPGNVIKMVFSATLTTNAEKLYNLYLHNPKIFLTDSVKL 409
+ F++ +F + D Q ++ SAT+ + + N ++ +P L +L
Sbjct: 145 KGFKDQIYEVFRSMPQDVQ--------VVLLSATMPSEVLDVTNRFMRDPIRILVKKDEL 196
Query: 410 YSIPKKLQELNVNIPTAKSLFKPLLLLRIIHDIKSSASRNAKILVFVKSNEASIRLESLL 469
+ +++ +N+ + F L L SR + L+F + +L L
Sbjct: 197 --TLEGIRQFYINVQKDEWKFNCLCDL-------LKTSRETQALIFCNTRRRVTQLTEQL 247
Query: 470 HAMLGSGIIEDEYNMFLXXXXXXXXXXXXRKLIQEFASSEQKKSVLISTDIMARGIDINE 529
++ + + ++++F S + VL++TD+MARG++I +
Sbjct: 248 MSI----------PIKVSCFHGNMEHNEREDMVKDFNSRNTR--VLVTTDLMARGMNIRK 295
Query: 530 ITHVINYDLPISSQQYVHRCGRTARANTEGIAINLLVGK--GEQKFWSQHIDTDLSRDID 587
+ +INYD+ + + Y+ R GR ++G+ I+ + K H T + +
Sbjct: 296 -SLIINYDVSGNMENYMLRNGRQGNFGSKGLPISFFTENDISDLKKIENHYSTRIEEMPE 354
Query: 588 GYQPSAYLDE 597
+ YLDE
Sbjct: 355 SF--LEYLDE 362
>Hs8922886 [A] KOG0332 ATP-dependent RNA helicase
Length = 478
Score = 73.6 bits (179), Expect = 9e-13
Identities = 82/354 (23%), Positives = 153/354 (43%), Gaps = 55/354 (15%)
Query: 230 DILVNASTGSGKTLAYSVPLVQILRSRTVNKVRAIILVPTKILIHQVYDCLSKLSQG-TS 288
+++ + +G+GKT A+ + ++ + + + L PT L Q + ++ +
Sbjct: 132 NLIAQSQSGTGKTAAFVLAMLSRVEPSD-RYPQCLCLSPTYELALQTGKVIEQMGKFYPE 190
Query: 289 LNVSMSKLENSLKEEHNKFLYNSPDILIITPGRLVDHLQMESF-DLKTLKFLVLDEADRL 347
L ++ + N L E K S I+I TPG ++D F D K +K VLDEAD +
Sbjct: 191 LKLAYAVRGNKL-ERGQKI---SEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVM 246
Query: 348 LNQSFQNWNQVLFHHLTNDKQDKRPGNVIKMVFSATLTTNAEKLYNLYLHNPKIFLTDSV 407
+ + + P N ++FSAT + K + +P +
Sbjct: 247 IATQGHQDQSIRIQRML-------PRNCQMLLFSATFEDSVWKFAQKVVPDPNVI----- 294
Query: 408 KLYSIPKKLQELNVNIPTAKSLFKPLLLLRIIHDIKSSASRN-------AKILVFVKSNE 460
KL+ + T K + +L D K A N A+ ++F + +
Sbjct: 295 -------KLKREEETLDTIKQYY----VLCSSRDEKFQALCNLYGAITIAQAMIFCHTRK 343
Query: 461 ASIRLESLLHAMLGSGIIEDEYNMFLXXXXXXXXXXXXRKLIQEFASSEQKKSVLISTDI 520
+ + L + + ++ + + L +I+ F E K+ VL++T++
Sbjct: 344 TA--------SWLAAELSKEGHQVALLSGEMMVEQRAA--VIERFR--EGKEKVLVTTNV 391
Query: 521 MARGIDINEITHVINYDLPI------SSQQYVHRCGRTARANTEGIAINLLVGK 568
ARGID+ +++ VIN+DLP+ ++ Y+HR GRT R G+A+N++ K
Sbjct: 392 CARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSK 445
>CE18221 [A] KOG0332 ATP-dependent RNA helicase
Length = 613
Score = 73.6 bits (179), Expect = 9e-13
Identities = 114/488 (23%), Positives = 193/488 (39%), Gaps = 79/488 (16%)
Query: 105 GALSASDKVSSDNDVHDEDVSMKDVHSLTPIPQPAKVTNEALKLLDPSTYKSTAWDAATK 164
G +A V D+ + ++ H P+P + N+ ++ + K D +
Sbjct: 141 GHQAAQQFVKPDSKYKFTKPATEEAHEQVPVPADIALLNKFIQK-EVKMMKDVVVDVQRQ 199
Query: 165 IHYDSKMVKQFDSYEGELDARLLKNITSNFSSETFPIQTILFDKVLPLLNSSFKANRKLF 224
D K S EL RL + + F T + + LPLL +N
Sbjct: 200 ---DPKSPLYSISSFREL--RLKPEVLKALDTMNFQFPTRIQETALPLLLMEPPSN---- 250
Query: 225 TRRVGDILVNASTGSGKTLAYSVPLVQILRSRTVNKV--RAIILVPTKILIHQVYDCLSK 282
++ A +G+GKT A+ ++ +L VN + + I L PT L Q+ + + K
Sbjct: 251 ------LIAQAQSGTGKTAAF---VLTMLCRIDVNLMCPQCICLAPTLELAKQIGEVVEK 301
Query: 283 LSQGT-SLNVSMSKLENSLKEEHNKFLYNSPDILIITPGRLVDHLQM-ESFDLKTLKFLV 340
+ + +L + + ++ + L + I+I TPG D+LQ + D ++ LV
Sbjct: 302 MGKFIDNLKIHYAIKGGNMAAMRGRKL--TEQIVIGTPGITRDYLQKYKCIDPSKIRCLV 359
Query: 341 LDEADRLL-NQSFQNWNQVLFHHLTNDKQDKRPGNVIKMVFSATLTTNAEKLYNLYLHNP 399
LDEAD ++ +Q F + + +++ + D D +V M+FSAT P
Sbjct: 360 LDEADVMIYHQGFTDISTTIYN-MVEDASD----SVQSMLFSATYD------------EP 402
Query: 400 KIFLTDSVKLYSIPKKLQELNVNIPTAKSLFKPLLLLRIIHDIKSSASRNAKILVFVKSN 459
I + +I L+ +P K + A R++K V
Sbjct: 403 VINFATKIIKNAIVVMLKREEQALPNIKQFYV------------QCACRDSKYAAIVNLY 450
Query: 460 EASIRLESLLHAMLGSGIIEDEYNMF-----LXXXXXXXXXXXXRKLIQEFASSEQKKSV 514
S++ + ++ NM + I F + K V
Sbjct: 451 SGLAVASSVIFCHTKASVMWLYENMRARGHQVDVLHGDMTVVERADTIIHFKRGDFK--V 508
Query: 515 LISTDIMARGIDINEITHVINYDLPI-----------------SSQQYVHRCGRTARANT 557
LI+T++ ARGID+ +++ VINYDLPI + Y+HR GRT R
Sbjct: 509 LITTNVFARGIDVAQVSVVINYDLPIKYTDEGTPMVVDGFTQPDCETYLHRIGRTGRFGK 568
Query: 558 EGIAINLL 565
GIAINL+
Sbjct: 569 TGIAINLI 576
>CE18220 [A] KOG0332 ATP-dependent RNA helicase
Length = 638
Score = 73.6 bits (179), Expect = 9e-13
Identities = 114/488 (23%), Positives = 193/488 (39%), Gaps = 79/488 (16%)
Query: 105 GALSASDKVSSDNDVHDEDVSMKDVHSLTPIPQPAKVTNEALKLLDPSTYKSTAWDAATK 164
G +A V D+ + ++ H P+P + N+ ++ + K D +
Sbjct: 166 GHQAAQQFVKPDSKYKFTKPATEEAHEQVPVPADIALLNKFIQK-EVKMMKDVVVDVQRQ 224
Query: 165 IHYDSKMVKQFDSYEGELDARLLKNITSNFSSETFPIQTILFDKVLPLLNSSFKANRKLF 224
D K S EL RL + + F T + + LPLL +N
Sbjct: 225 ---DPKSPLYSISSFREL--RLKPEVLKALDTMNFQFPTRIQETALPLLLMEPPSN---- 275
Query: 225 TRRVGDILVNASTGSGKTLAYSVPLVQILRSRTVNKV--RAIILVPTKILIHQVYDCLSK 282
++ A +G+GKT A+ ++ +L VN + + I L PT L Q+ + + K
Sbjct: 276 ------LIAQAQSGTGKTAAF---VLTMLCRIDVNLMCPQCICLAPTLELAKQIGEVVEK 326
Query: 283 LSQGT-SLNVSMSKLENSLKEEHNKFLYNSPDILIITPGRLVDHLQM-ESFDLKTLKFLV 340
+ + +L + + ++ + L + I+I TPG D+LQ + D ++ LV
Sbjct: 327 MGKFIDNLKIHYAIKGGNMAAMRGRKL--TEQIVIGTPGITRDYLQKYKCIDPSKIRCLV 384
Query: 341 LDEADRLL-NQSFQNWNQVLFHHLTNDKQDKRPGNVIKMVFSATLTTNAEKLYNLYLHNP 399
LDEAD ++ +Q F + + +++ + D D +V M+FSAT P
Sbjct: 385 LDEADVMIYHQGFTDISTTIYN-MVEDASD----SVQSMLFSATYD------------EP 427
Query: 400 KIFLTDSVKLYSIPKKLQELNVNIPTAKSLFKPLLLLRIIHDIKSSASRNAKILVFVKSN 459
I + +I L+ +P K + A R++K V
Sbjct: 428 VINFATKIIKNAIVVMLKREEQALPNIKQFYV------------QCACRDSKYAAIVNLY 475
Query: 460 EASIRLESLLHAMLGSGIIEDEYNMF-----LXXXXXXXXXXXXRKLIQEFASSEQKKSV 514
S++ + ++ NM + I F + K V
Sbjct: 476 SGLAVASSVIFCHTKASVMWLYENMRARGHQVDVLHGDMTVVERADTIIHFKRGDFK--V 533
Query: 515 LISTDIMARGIDINEITHVINYDLPI-----------------SSQQYVHRCGRTARANT 557
LI+T++ ARGID+ +++ VINYDLPI + Y+HR GRT R
Sbjct: 534 LITTNVFARGIDVAQVSVVINYDLPIKYTDEGTPMVVDGFTQPDCETYLHRIGRTGRFGK 593
Query: 558 EGIAINLL 565
GIAINL+
Sbjct: 594 TGIAINLI 601
>CE18219 [A] KOG0332 ATP-dependent RNA helicase
Length = 1022
Score = 73.6 bits (179), Expect = 9e-13
Identities = 114/488 (23%), Positives = 193/488 (39%), Gaps = 79/488 (16%)
Query: 105 GALSASDKVSSDNDVHDEDVSMKDVHSLTPIPQPAKVTNEALKLLDPSTYKSTAWDAATK 164
G +A V D+ + ++ H P+P + N+ ++ + K D +
Sbjct: 550 GHQAAQQFVKPDSKYKFTKPATEEAHEQVPVPADIALLNKFIQK-EVKMMKDVVVDVQRQ 608
Query: 165 IHYDSKMVKQFDSYEGELDARLLKNITSNFSSETFPIQTILFDKVLPLLNSSFKANRKLF 224
D K S EL RL + + F T + + LPLL +N
Sbjct: 609 ---DPKSPLYSISSFREL--RLKPEVLKALDTMNFQFPTRIQETALPLLLMEPPSN---- 659
Query: 225 TRRVGDILVNASTGSGKTLAYSVPLVQILRSRTVNKV--RAIILVPTKILIHQVYDCLSK 282
++ A +G+GKT A+ ++ +L VN + + I L PT L Q+ + + K
Sbjct: 660 ------LIAQAQSGTGKTAAF---VLTMLCRIDVNLMCPQCICLAPTLELAKQIGEVVEK 710
Query: 283 LSQGT-SLNVSMSKLENSLKEEHNKFLYNSPDILIITPGRLVDHLQM-ESFDLKTLKFLV 340
+ + +L + + ++ + L + I+I TPG D+LQ + D ++ LV
Sbjct: 711 MGKFIDNLKIHYAIKGGNMAAMRGRKL--TEQIVIGTPGITRDYLQKYKCIDPSKIRCLV 768
Query: 341 LDEADRLL-NQSFQNWNQVLFHHLTNDKQDKRPGNVIKMVFSATLTTNAEKLYNLYLHNP 399
LDEAD ++ +Q F + + +++ + D D +V M+FSAT P
Sbjct: 769 LDEADVMIYHQGFTDISTTIYN-MVEDASD----SVQSMLFSATYD------------EP 811
Query: 400 KIFLTDSVKLYSIPKKLQELNVNIPTAKSLFKPLLLLRIIHDIKSSASRNAKILVFVKSN 459
I + +I L+ +P K + A R++K V
Sbjct: 812 VINFATKIIKNAIVVMLKREEQALPNIKQFYV------------QCACRDSKYAAIVNLY 859
Query: 460 EASIRLESLLHAMLGSGIIEDEYNMF-----LXXXXXXXXXXXXRKLIQEFASSEQKKSV 514
S++ + ++ NM + I F + K V
Sbjct: 860 SGLAVASSVIFCHTKASVMWLYENMRARGHQVDVLHGDMTVVERADTIIHFKRGDFK--V 917
Query: 515 LISTDIMARGIDINEITHVINYDLPI-----------------SSQQYVHRCGRTARANT 557
LI+T++ ARGID+ +++ VINYDLPI + Y+HR GRT R
Sbjct: 918 LITTNVFARGIDVAQVSVVINYDLPIKYTDEGTPMVVDGFTQPDCETYLHRIGRTGRFGK 977
Query: 558 EGIAINLL 565
GIAINL+
Sbjct: 978 TGIAINLI 985
>CE25531 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 involved in
rRNA maturation DEAD-box superfamily
Length = 508
Score = 70.9 bits (172), Expect = 6e-12
Identities = 72/306 (23%), Positives = 139/306 (44%), Gaps = 35/306 (11%)
Query: 230 DILVNASTGSGKTLAYSVPLVQILRSRTVNKVRAIILVPTKILIHQVYDCLSKLSQGTSL 289
D++ A +G+GKT +S+ ++Q L ++ V + +A+IL PT+ L Q+ + L ++
Sbjct: 65 DVIAQAQSGTGKTATFSISVLQSLDTQ-VRETQALILSPTRELAVQIQKVVLALGDYMNV 123
Query: 290 NVSMSKLENSLKEEHNKFLYNSPDILIITPGRLVDHLQMESFDLKTLKFLVLDEADRLLN 349
+L E+ K Y ++ TPGR+ D ++ + + +K LVLDEAD +LN
Sbjct: 124 QCHACIGGTNLGEDIRKLDYGQ-HVVSGTPGRVFDMIRRRNLRTRAIKLLVLDEADEMLN 182
Query: 350 QSFQNWNQVLFHHLTNDKQDKRPGNVIKMVFSATLTTNAEKLYNLYLHNPKIFLT--DSV 407
+ F+ ++ +L P ++ SATL ++ + ++ +P L D +
Sbjct: 183 KGFKEQLYDIYRYL--------PPGAQVVLLSATLPHEILEMTSKFMTDPIRILVKRDEL 234
Query: 408 KLYSIPKKLQELNVNIPTAKSLFKPLLLLRIIHDIKSSASRNAKILVFVKSNEASIRLES 467
L I + ++ +L L I + +R + K EA+ + S
Sbjct: 235 TLEGIKQFFVAVDREEWKFDTLIDLYDTLTITQAVLFCNTRRKVDWLTDKMKEANFTVSS 294
Query: 468 LLHAMLGSGIIEDEYNMFLXXXXXXXXXXXXRKLIQEFASSEQKKSVLISTDIMARGIDI 527
+ G +E + ++++EF + + VLISTD+ ARG+D+
Sbjct: 295 M------HGDMEQK---------------DRDEVMKEFRAGTTR--VLISTDVWARGLDV 331
Query: 528 NEITHV 533
+++ V
Sbjct: 332 PQVSLV 337
>Hs17474878 [A] KOG0333 U5 snRNP-like RNA helicase subunit
Length = 645
Score = 70.1 bits (170), Expect = 1e-11
Identities = 70/268 (26%), Positives = 118/268 (43%), Gaps = 55/268 (20%)
Query: 313 DILIITPGRLVDHLQMESFDLKTLKFLVLDEADRLLNQSFQ-NWNQVLFHHLTNDKQDKR 371
+I+I TPG L+D L+ L ++VLDEADR+++ F+ + ++L H ++ +
Sbjct: 384 EIVIATPGHLIDVLENRYLVLSCCTYVVLDEADRMIDVGFEPDVQKILEHMPQSEARHDE 443
Query: 372 PGNVIKMV--FSATLTTNAEKLYNLYLHNPKIFLTDSVKLYSIPKKLQELNVNIPTAKSL 429
+ KM+ F + E++ ++L +++S K KKL E+ K
Sbjct: 444 SEDPEKMLANFESGKRKPHERVEQVFL------MSESEKR----KKLLEI------LKQG 487
Query: 430 FKPLLLLRIIHDIKSSASRNAKILVFVKSNEASIRLESLLHAMLGSGIIEDEYNMFLXXX 489
F P + + + ++ V KS E LH G G +
Sbjct: 488 FDPAITIFV--------NQKKGCDVLAKSLEKMGYNACTLHG--GKGQEQ---------- 527
Query: 490 XXXXXXXXXRKLIQEFASSEQK---KSVLISTDIMARGIDINEITHVINYDLPISSQQYV 546
+EFA S K K VL++TD+ GIDI +++ V+NYD+ + Y+
Sbjct: 528 -------------REFALSNLKPGAKDVLVTTDVAGHGIDIQDVSMVVNYDMAKNIDDYI 574
Query: 547 HRCGRTARANTEGIAINLLVGKGEQKFW 574
HR GR +A G+AI L + F+
Sbjct: 575 HRIGRMGQAGKSGVAITFLTKEDSAVFY 602
>Hs21327697 [A] KOG0332 ATP-dependent RNA helicase
Length = 369
Score = 68.9 bits (167), Expect = 2e-11
Identities = 75/349 (21%), Positives = 153/349 (43%), Gaps = 51/349 (14%)
Query: 230 DILVNASTGSGKTLAYSVPLVQILRSRTVNKVRAIILVPTKILIHQVYDCLSK----LSQ 285
+++ + +G+GKT A+ + ++ ++V A+ L P + + Y+ + + Q
Sbjct: 24 NLIAQSQSGTGKTAAFVLAML--------SRVNALELFPQCLCLAPTYELALQTGRVVEQ 75
Query: 286 GTSLNVSMSKLENSLKEEHNKFLYNSPDILIITPGRLVDH-LQMESFDLKTLKFLVLDEA 344
V + + + + I+I TPG ++D +++ DL ++ VLDEA
Sbjct: 76 MGKFCVDVQVMYAIRGNRIPRGTDITKQIIIGTPGTVLDWCFKLKLIDLTKIRVFVLDEA 135
Query: 345 DRLLN-QSFQNWNQVLFHHLTNDKQDKRPGNVIKMVFSATLTTNAEKLYNLYLHNPKIFL 403
D +++ Q F + + + L ++ Q ++FSAT + + +P +
Sbjct: 136 DVMIDTQGFSDHSIRIQRALPSECQ--------MLLFSATFEDSVWHFAERIIPDPNVI- 186
Query: 404 TDSVKLYSIPKKLQELNVNIPTAKSLFKPLLLLRIIHDIKSSASRNAKILVFVKSNEASI 463
KL++ + + + + + K I + +A I
Sbjct: 187 -----------KLRKEELTLNNIRQYYV------LCEHRKDKYQALCNIYGSITIGQAII 229
Query: 464 RLESLLHAM-LGSGIIEDEYNMFLXXXXXXXXXXXXRKLIQEFASSEQKKSVLISTDIMA 522
++ +A L +I+D + + L +IQ F ++K VLI+T++ A
Sbjct: 230 FCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRAS--IIQRFRDGKEK--VLITTNVCA 285
Query: 523 RGIDINEITHVINYDLPISS------QQYVHRCGRTARANTEGIAINLL 565
RGID+ ++T V+N+DLP+ + Y+HR GRT R +G+A N++
Sbjct: 286 RGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKKGLAFNMI 334
>CE26264 [A] KOG0335 ATP-dependent RNA helicase
Length = 328
Score = 67.4 bits (163), Expect = 6e-11
Identities = 59/233 (25%), Positives = 102/233 (43%), Gaps = 26/233 (11%)
Query: 337 KFLVLDEADRLLNQSFQ-NWNQVLFHHLTNDKQDKRPGNVIKMVFSATLTTNAEKLYNLY 395
++LVLDEADR+L+ F+ Q++ + K+++ I +FSAT + L +
Sbjct: 12 RYLVLDEADRMLDMGFEPQIRQIVECNRMPSKEER-----ITAMFSATFPKEIQLLAQDF 66
Query: 396 LHNPKIFLTDSVKLYSIPKKLQELNVNIPTAKSLFKPLLLLRIIHDIKSSASRNAKILVF 455
L +FL ++ S + + + V + + + D+ + ++ LVF
Sbjct: 67 LKENYVFLAVG-RVGSTSENIMQKIVWVEEDEKR-------SYLMDLLDATGDSSLTLVF 118
Query: 456 VKSNEASIRLESLLHAMLGSGIIEDEYNMFLXXXXXXXXXXXXRKLIQEFASSEQKKSVL 515
V++ + L L+ N + K + F + +L
Sbjct: 119 VETKRGASDLAYYLNRQ----------NYEVVTIHGDLKQFEREKHLDLFRTGTAP--IL 166
Query: 516 ISTDIMARGIDINEITHVINYDLPISSQQYVHRCGRTARANTEGIAINLLVGK 568
++T + ARG+DI + HVINYDLP +YVHR GRT R G+A + K
Sbjct: 167 VATAVAARGLDIPNVKHVINYDLPSDVDEYVHRIGRTGRVGNVGLATSFFNDK 219
>HsM7019399 [A] KOG0332 ATP-dependent RNA helicase
Length = 369
Score = 67.0 bits (162), Expect = 8e-11
Identities = 74/349 (21%), Positives = 152/349 (43%), Gaps = 51/349 (14%)
Query: 230 DILVNASTGSGKTLAYSVPLVQILRSRTVNKVRAIILVPTKILIHQVYDCLSK----LSQ 285
+++ + +G+GKT A+ + ++ ++V A+ L P + + Y+ + + Q
Sbjct: 24 NLIAQSQSGTGKTAAFVLAML--------SRVNALELFPQCLCLAPTYELALQTGRVVEQ 75
Query: 286 GTSLNVSMSKLENSLKEEHNKFLYNSPDILIITPGRLVDH-LQMESFDLKTLKFLVLDEA 344
V + + + + I+I TPG ++D +++ DL ++ VLDEA
Sbjct: 76 MGKFCVDVQVMYAIRGNRIPRGTDITKQIIIGTPGTVLDWCFKLKLIDLTKIRVFVLDEA 135
Query: 345 DRLLN-QSFQNWNQVLFHHLTNDKQDKRPGNVIKMVFSATLTTNAEKLYNLYLHNPKIFL 403
D +++ Q F + + + L ++ Q ++FSAT + + +P +
Sbjct: 136 DVMIDTQGFSDHSIRIQRALPSECQ--------MLLFSATFEDSVWHFAERIIPDPNVI- 186
Query: 404 TDSVKLYSIPKKLQELNVNIPTAKSLFKPLLLLRIIHDIKSSASRNAKILVFVKSNEASI 463
KL++ + + + + + K I + +A I
Sbjct: 187 -----------KLRKEELTLNNIRQYYV------LCEHRKDKYQALCNIYGSITIGQAII 229
Query: 464 RLESLLHAM-LGSGIIEDEYNMFLXXXXXXXXXXXXRKLIQEFASSEQKKSVLISTDIMA 522
++ +A L +I+D + + L + Q F ++K VLI+T++ A
Sbjct: 230 FCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRAS--ITQRFRDGKEK--VLITTNVCA 285
Query: 523 RGIDINEITHVINYDLPISS------QQYVHRCGRTARANTEGIAINLL 565
RGID+ ++T V+N+DLP+ + Y+HR GRT R +G+A N++
Sbjct: 286 RGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKKGLAFNMI 334
>CE27641 [A] KOG0349 Putative DEAD-box RNA helicase DDX1
Length = 752
Score = 64.3 bits (155), Expect = 5e-10
Identities = 89/400 (22%), Positives = 160/400 (39%), Gaps = 75/400 (18%)
Query: 264 IILVPTKILIHQVYDCL----SKLSQGTSLNVSMSKLENSLKEEHNKFLYNSPDILIITP 319
+IL PT+ L+ Q + + S L V+++ EN + + L DI++ TP
Sbjct: 309 VILEPTRELVQQTFQNIQTFASVLDSPKIRCVTLAAGENM--NQILRTLETGCDIVVGTP 366
Query: 320 GRLVDHLQMESFDLKTLKFLVLDEADRLLNQSFQNWNQV--LFHHLTNDKQDKRPGNVIK 377
R+ D + K L+F+V+DE D+ L +Q+ +F L QD VI
Sbjct: 367 SRVFDLIHTGKLATKNLQFVVIDEIDQFLAGKNNCAHQIESIFRVLPLVAQDGTRRQVIA 426
Query: 378 -----------------MVFSATLTTNAEKLYNLYLHNPKIFLTDSVKLYSIPKKLQELN 420
M F + + +H+ + S I + Q+++
Sbjct: 427 CSATLHNFEVCRFADRHMSFPQWIDLKGADCVSADVHHVVCHVDASEDKQWIRQMHQQVH 486
Query: 421 VN-------------------IPTAKSLFKPLLLLRIIHDIKSSASRNAKILVFVKSNEA 461
+ I + K + ++R IH ++ K +VF ++ +
Sbjct: 487 LEDDHVHDGDQIRPGTTDKDTISLGTKILKGIYVVRAIHALQMD-----KAIVFCRTKQQ 541
Query: 462 SIRLESLLHAMLGSGIIEDEYNMFLXXXXXXXXXXXXRKLIQEFASSEQKKSV---LIST 518
+E L + N+ + ++ F KK + L+ +
Sbjct: 542 CDHMEHFLQ----------QNNLSAACLHGDRSAEERQSSLEGF-----KKGIIRFLVCS 586
Query: 519 DIMARGIDINEITHVINYDLPISSQQYVHRCGRTARANTEGIAINLLVGKGEQKFW---- 574
D++ARG+D+ + VI+ LP YVHR GR RA G++I+ LV + E+K W
Sbjct: 587 DVVARGLDVQGVPFVISVTLPDEKSMYVHRIGRVGRAERMGLSIS-LVSEYEEKAWYHKC 645
Query: 575 -SQHIDTDLSRDIDGYQPSAYLDEEKLSELFSIEDTLKDT 613
S+ ++ ++DI + +L E+K+ L IE+ L T
Sbjct: 646 RSRGVNCTNTKDISKGGCTIWLQEKKM--LGEIEEHLGAT 683
>Hs21040373 [A] KOG0329 ATP-dependent RNA helicase
Length = 316
Score = 63.9 bits (154), Expect = 7e-10
Identities = 47/173 (27%), Positives = 86/173 (49%), Gaps = 15/173 (8%)
Query: 230 DILVNASTGSGKTLAYSVPLVQILRSRTVNKVRAIILVPTKILIHQV---YDCLSKLSQG 286
D+L A +G GKT + + +Q + +V +++ T+ L Q+ Y+ SK
Sbjct: 83 DVLCQAKSGMGKTAVFVLATLQQIEPVN-GQVTVLVMCHTRELAFQISKEYERFSKYMPS 141
Query: 287 TSLNVSMSKLENSLKEEHNKFLYNSPDILIITPGRLVDHLQMESFDLKTLKFLVLDEADR 346
++V L S+K++ N P +++ TPGR++ ++ SF LK +K VLDE D+
Sbjct: 142 VKVSVFFGGL--SIKKDEEVLKKNCPHVVVGTPGRILALVRNRSFSLKNVKHFVLDECDK 199
Query: 347 LLNQ-SFQNWNQVLFHHLTNDKQDKRPGNVIKMVFSATLTTNAEKLYNLYLHN 398
+L Q + Q +F ++KQ M+FSATL+ + + ++ +
Sbjct: 200 MLEQLDMRRDVQEIFRLTPHEKQ--------CMMFSATLSKDIRPVCRKFMQD 244
>ECU05g1270 [A] KOG0331 ATP-dependent RNA helicase
Length = 426
Score = 63.9 bits (154), Expect = 7e-10
Identities = 40/123 (32%), Positives = 71/123 (57%), Gaps = 9/123 (7%)
Query: 233 VNASTGSGKTLAYSVPLVQILRSRTVNKVRAIILVPTKILIHQVYDCLSKLSQGTSLNVS 292
V + TGSGKTL+Y +P + +L S R +++VPT+ L+ QV K S+G +
Sbjct: 98 VISETGSGKTLSYVLPHIHLLES---GDKRLLVIVPTRELVSQVGQVFRKFSEGL---LR 151
Query: 293 MSKLENSLKEEHNKFLYNSP-DILIITPGRLVDHLQMESFDLKTLKFLVLDEADRLLNQS 351
+ ++ + E + + P D+ I TPGRL + L+++S + +++V+DEADRL+
Sbjct: 152 IVEITGEVSIESQRLQVSRPFDVAISTPGRLRELLELKS--IGGFEYVVVDEADRLMQHD 209
Query: 352 FQN 354
++
Sbjct: 210 IRS 212
Score = 61.2 bits (147), Expect = 4e-09
Identities = 28/57 (49%), Positives = 43/57 (75%), Gaps = 1/57 (1%)
Query: 509 EQKKSVLISTDIMARGIDINEITHVINYDLPISSQQYVHRCGRTARANTEGIAINLL 565
E +++VLI+TD+ RGIDI ++ V+NYDLP + YVHRCGRT R +G+A++++
Sbjct: 336 EGERAVLIATDLGGRGIDIKDVDLVVNYDLPRAVDGYVHRCGRTGR-QRKGMALSMI 391
>CE29051 [A] KOG0335 ATP-dependent RNA helicase
Length = 1016
Score = 61.6 bits (148), Expect = 3e-09
Identities = 40/131 (30%), Positives = 70/131 (52%), Gaps = 12/131 (9%)
Query: 230 DILVNASTGSGKTLAYSVPLV-----QILRSRTVN----KVRAIILVPTKILIHQVYDCL 280
D++ A TGSGKTLA+ +P V + + R V R +I+ PT+ L++Q +
Sbjct: 738 DVVACAHTGSGKTLAFLIPFVIKLMEEFEKDRDVTDEKPSPRLLIVAPTRELVNQTFTTA 797
Query: 281 SKLSQGTSLNVSMS--KLENSLKEEHNKFLYNSPDILIITPGRLVDHLQMESFDLKTLKF 338
+L+ T L ++ + +H + ++ +IL+ T GRL D + L +K+
Sbjct: 798 RQLTYETGLKCGLAFGGYSRNANVQHLRS-FSQLNILVATMGRLQDFVNAGEVSLSKMKY 856
Query: 339 LVLDEADRLLN 349
+VLDEADR+++
Sbjct: 857 IVLDEADRMVD 867
>Hs4826686 [A] KOG0349 Putative DEAD-box RNA helicase DDX1
Length = 740
Score = 60.5 bits (145), Expect = 8e-09
Identities = 31/60 (51%), Positives = 39/60 (64%), Gaps = 1/60 (1%)
Query: 515 LISTDIMARGIDINEITHVINYDLPISSQQYVHRCGRTARANTEGIAINLLVGKGEQKFW 574
LI TD+ ARGIDI+ + +VIN LP Q YVHR GR RA G+AI+ LV ++K W
Sbjct: 569 LICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAIS-LVATEKEKVW 627
Score = 51.6 bits (122), Expect = 4e-06
Identities = 43/148 (29%), Positives = 72/148 (48%), Gaps = 13/148 (8%)
Query: 259 NKVRAIILVPTKILIHQVYDCLSKLSQGTSLNVSMSKLENSL------KEEHNKFLYNSP 312
N +A+I+ P++ L Q + + + + + KL L + L N
Sbjct: 285 NAPKALIVEPSRELAEQTLNNIKQFKK----YIDNPKLRELLIIGGVAARDQLSVLENGV 340
Query: 313 DILIITPGRLVDHLQMESFDLKTLKFLVLDEADRLLNQSFQNWNQVLFHHLTNDKQDKRP 372
DI++ TPGRL D + +L ++FLVLDEAD LL+Q + ++ + + + D +
Sbjct: 341 DIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKR 400
Query: 373 GNVIKMVFSATL-TTNAEKLYNLYLHNP 399
VI V SATL + + +KL +H P
Sbjct: 401 LQVI--VCSATLHSFDVKKLSEKIMHFP 426
>Hs17475661 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 240
Score = 59.7 bits (143), Expect = 1e-08
Identities = 26/65 (40%), Positives = 46/65 (70%), Gaps = 2/65 (3%)
Query: 501 LIQEFASSEQKKSVLISTDIMARGIDINEITHVINYDLPISSQQYVHRCGRTARANTEGI 560
+++E+ S + VLI+TD++ RGID+ +++ VINYD P + + Y+HR GR + +G+
Sbjct: 171 VMREYRSGSSR--VLITTDLLPRGIDVQQLSLVINYDPPTNRENYIHRIGRGGQFGHKGV 228
Query: 561 AINLL 565
AIN++
Sbjct: 229 AINMV 233
>Hs22045464 [A] KOG0343 RNA Helicase
Length = 597
Score = 56.2 bits (134), Expect = 1e-07
Identities = 33/114 (28%), Positives = 60/114 (51%), Gaps = 2/114 (1%)
Query: 510 QKKSVLISTDIMARGIDINEITHVINYDLPISSQQYVHRCGRTARANTEGIAINLLVGKG 569
++ +VL ++D+ ARG+D + + +D P + Y+HR GRTAR +G A+ +L+
Sbjct: 231 KRAAVLFASDVAARGLDFPAVNWALQFDCPEDANTYIHRAGRTARYKEDGEALLILLA-S 289
Query: 570 EQKFWSQHIDTDLSRDIDGYQPSAYLDEEKLSELFSIED-TLKDTYKGCIKQLQ 622
E+ Q + + P +D +K E FS ED LK+ + ++++Q
Sbjct: 290 EKAIVQQLLQKKVPIKEIKINPEKLIDIQKKLESFSAEDQDLKERAQRFLQKMQ 343
>7290730 [A] KOG0331 ATP-dependent RNA helicase
Length = 438
Score = 54.7 bits (130), Expect = 4e-07
Identities = 68/335 (20%), Positives = 138/335 (40%), Gaps = 46/335 (13%)
Query: 230 DILVNASTGSGKTLAYSVPLVQIL---RSRTVNKVRAIILVPTKILIHQVYDCLSKLSQG 286
+I++ + G+GKTL Y +P + + R +K I+L+ + DC
Sbjct: 71 NIVMISGKGTGKTLGYLLPGIMKMHNQRGLMQHKKGPIVLI--------LVDCREA---A 119
Query: 287 TSLNVSMSKLENSLKEEHNKFLYNSP-------DILIITPGRLVDHLQMESF--DLKTLK 337
+ + N L+ + L NS D+L+ + GRL+ + + +L+
Sbjct: 120 VMVQREVLYYTNPLELRTHCLLGNSQWQGHAECDLLVASAGRLLQMIDNKKHVVELERCT 179
Query: 338 FLVLDEADRLLNQSFQNWNQVLFHHLTNDKQDKRPGNVIKMVFSATLTTNAEKLYNLYLH 397
+LVLD DR+++ + L L Q +V S + ++N +++ N +L
Sbjct: 180 YLVLDNIDRMIDVGLEGNICRLLCRLRPHAQ--------LIVSSTSWSSNLKRMANKFLG 231
Query: 398 NPKIFLTDSVKLYSIPKKLQELNVNIPTAKSLFKPLLLLRIIHDIKSSASRNAKILVFVK 457
+ +I +LQ + + L K L++ + I ++ K++++VK
Sbjct: 232 QYTAIRVGEIN--NIGVRLQNIRQRVEVVNGLSKVERLMKELTAIYDTSDIPGKVVIYVK 289
Query: 458 SNEASIRLESLLHAMLGSGIIEDEYNMFLXXXXXXXXXXXXRKLIQEFASSEQKKSVLIS 517
+ L L+ + I + +I +F + +++++
Sbjct: 290 RQKVVEELVDLIRNCVPCEGIHG-----------GRTAQENQGIIHDFGTGAY--NIIVA 336
Query: 518 TDIMARGIDINEITHVINYDLPISSQQYVHRCGRT 552
T + + +D+ I +VINYD P + +YV R RT
Sbjct: 337 TQMTSNCLDVPGIRYVINYDFPDNIDKYVQRMSRT 371
>7296530 [A] KOG0349 Putative DEAD-box RNA helicase DDX1
Length = 727
Score = 54.3 bits (129), Expect = 5e-07
Identities = 29/65 (44%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Query: 510 QKKSVLISTDIMARGIDINEITHVINYDLPISSQQYVHRCGRTARANTEGIAINLLVGKG 569
Q+ LI TD+ ARG+DI + +IN LP YVHR GR RA G+AI+ LV
Sbjct: 557 QQVKFLICTDVAARGLDITGLPFMINVTLPDDKTNYVHRIGRVGRAERMGLAIS-LVATV 615
Query: 570 EQKFW 574
+K W
Sbjct: 616 PEKVW 620
>Hs22070384 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 447
Score = 52.4 bits (124), Expect = 2e-06
Identities = 34/99 (34%), Positives = 52/99 (52%), Gaps = 9/99 (9%)
Query: 308 LYNSPDILIITPGRLVDHLQ-MESFDLKTLKFLVLDEADRLLNQSFQNWNQVLFHHLTND 366
L N +I++ T GRL+DH+Q F K L+ LV+DEADR+L+ F+ + + L
Sbjct: 13 LANGINIIVATSGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLLTH 72
Query: 367 KQDKRPGNVIKMVFSATLTTNAEKLYNLYLHNPKIFLTD 405
+Q M+FSAT T E L + L +++ D
Sbjct: 73 RQ--------TMLFSATQTQKVEDLARISLKKEPLYVGD 103
>Hs22054507 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 729
Score = 52.0 bits (123), Expect = 3e-06
Identities = 49/168 (29%), Positives = 76/168 (45%), Gaps = 20/168 (11%)
Query: 230 DILVNASTGSGKTLAYSVPLVQILRSRTVNKVRAIILVPTKILIHQVYDCLSKLSQGTSL 289
D+L A TGS V L L+ N+ IL PT+ L Q++ + T
Sbjct: 408 DLLAAAKTGS-------VELTVKLKFMPTNRPGVFILSPTRELAMQIFGGANTHHMHT-Y 459
Query: 290 NVSMSKLENSLKEEHNKFLYNSPDILIITPGRLVDHLQ-MESFDLKTLKFLVLDEADRLL 348
+ M S + + L N +I++ TPG L+D++Q F K L++LV+DEADR+L
Sbjct: 460 GLIMGGDNTSAEAQK---LANGINIIVATPGHLLDYMQNTPGFMYKNLQYLVIDEADRIL 516
Query: 349 NQSFQNWNQVLFHHLTNDKQDKRPGNVIKMVFSATLTTNAEKLYNLYL 396
+ F+ + + L + M+ SAT T E L + L
Sbjct: 517 DVGFEEELKQIIKLLPTCRH--------TMLLSATQTRKVEDLARISL 556
>CE27336 [A] KOG0334 RNA helicase
Length = 436
Score = 50.4 bits (119), Expect = 8e-06
Identities = 21/42 (50%), Positives = 29/42 (69%)
Query: 514 VLISTDIMARGIDINEITHVINYDLPISSQQYVHRCGRTARA 555
VL++T + ARG+D+ + V+NYD P + YVHR GRT RA
Sbjct: 304 VLVATSVAARGLDVKNLILVVNYDCPNHYEDYVHRVGRTGRA 345
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.316 0.132 0.360
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,735,296
Number of Sequences: 60738
Number of extensions: 1252169
Number of successful extensions: 4821
Number of sequences better than 1.0e-05: 229
Number of HSP's better than 0.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 51
Number of HSP's that attempted gapping in prelim test: 3963
Number of HSP's gapped (non-prelim): 398
length of query: 630
length of database: 30,389,216
effective HSP length: 113
effective length of query: 517
effective length of database: 23,525,822
effective search space: 12162849974
effective search space used: 12162849974
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)