ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactVI1864 good J KOG0899 Translation, ribosomal structure and biogenesis Mitochondrial/chloroplast ribosomal protein S19
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= r_klactVI1864 668130  668402 91   
         (91 letters)

Database: KOG eukaryal database 04/03 
           60,738 sequences; 30,389,216 total letters

Searching..................................................done

Color Key for Alignment Scores:   


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

YNR037c [J] KOG0899 Mitochondrial/chloroplast ribosomal protein S19   163   3e-41
SPAC1751.02c [J] KOG0899 Mitochondrial/chloroplast ribosomal pro...   104   2e-23
At5g47320 [J] KOG0899 Mitochondrial/chloroplast ribosomal protei...    57   6e-09
AtCh062 [J] KOG0899 Mitochondrial/chloroplast ribosomal protein S19    48   3e-06
ECU08g0350i [J] KOG0898 40S ribosomal protein S15                      47   6e-06

>YNR037c [J] KOG0899 Mitochondrial/chloroplast ribosomal protein S19
          Length = 91

 Score =  163 bits (413), Expect = 3e-41
 Identities = 77/91 (84%), Positives = 84/91 (91%)

Query: 1  MFPSLRLLSRSVWKGPNIVPLPIKEALAKGTPIRTNARSATILPQFVGLKFQVHNGKEYV 60
          M P+ RLLSRSVWKGPNIVPLPI+EA+ KGTPIRTNAR+ATILPQFVGLKFQ+HNGKEYV
Sbjct: 1  MQPAARLLSRSVWKGPNIVPLPIREAMTKGTPIRTNARAATILPQFVGLKFQIHNGKEYV 60

Query: 61 AFEVTEDMVGSKLGEFVPTRKRFSYTQTKNK 91
            E++EDMVG KLGEF PTRKRFSYTQTKNK
Sbjct: 61 PIEISEDMVGHKLGEFAPTRKRFSYTQTKNK 91


>SPAC1751.02c [J] KOG0899 Mitochondrial/chloroplast ribosomal protein S19
          Length = 108

 Score =  104 bits (259), Expect = 2e-23
 Identities = 48/85 (56%), Positives = 62/85 (72%), Gaps = 2/85 (2%)

Query: 9   SRSVWKGPNIVP--LPIKEALAKGTPIRTNARSATILPQFVGLKFQVHNGKEYVAFEVTE 66
           +RSVWKGPN+V   + +++ +    PI+T  RSATILP+ VG +F VHNGK Y   ++TE
Sbjct: 24  ARSVWKGPNVVDFGVNVQQCIKGNVPIKTAVRSATILPRMVGAQFMVHNGKSYANVKITE 83

Query: 67  DMVGSKLGEFVPTRKRFSYTQTKNK 91
           DM+G KLGEF PTRK F Y QTKN+
Sbjct: 84  DMIGHKLGEFAPTRKAFHYRQTKNR 108


>At5g47320 [J] KOG0899 Mitochondrial/chloroplast ribosomal protein S19
          Length = 244

 Score = 56.6 bits (135), Expect = 6e-09
 Identities = 31/84 (36%), Positives = 50/84 (58%), Gaps = 1/84 (1%)

Query: 6   RLLSRSVWKGPNIVPLPIKEALAKGTPIRTNARSATILPQFVGLKFQVHNGKEYVAFEVT 65
           +++SRSVWK P +    +K+  A     +  +R +TILP++V    +++NGK +V  ++T
Sbjct: 162 KMMSRSVWKDPFVDAFLMKKKNA-ALNRKIWSRRSTILPEYVDSAVRIYNGKTHVRCKIT 220

Query: 66  EDMVGSKLGEFVPTRKRFSYTQTK 89
           E  VG K GEF  TRK   + + K
Sbjct: 221 EGKVGHKFGEFAFTRKVKKHAKAK 244


>AtCh062 [J] KOG0899 Mitochondrial/chloroplast ribosomal protein S19
          Length = 92

 Score = 47.8 bits (112), Expect = 3e-06
 Identities = 27/89 (30%), Positives = 48/89 (53%), Gaps = 5/89 (5%)

Query: 8  LSRSVWKGPNIVPLPIKEALAKGTP-----IRTNARSATILPQFVGLKFQVHNGKEYVAF 62
          ++RS+ K P +    +++     T      I T +R++TI+P  +G    +HNG+E++  
Sbjct: 1  MTRSLKKNPFVAKHLLRKIEKLNTKAEKEIIITWSRASTIIPTMIGHTIAIHNGREHLPV 60

Query: 63 EVTEDMVGSKLGEFVPTRKRFSYTQTKNK 91
           + + MVG KLGEF PT     + +  N+
Sbjct: 61 YIIDLMVGHKLGEFSPTINFRGHAKNDNR 89


>ECU08g0350i [J] KOG0898 40S ribosomal protein S15
          Length = 149

 Score = 46.6 bits (109), Expect = 6e-06
 Identities = 23/53 (43%), Positives = 31/53 (58%)

Query: 28  AKGTPIRTNARSATILPQFVGLKFQVHNGKEYVAFEVTEDMVGSKLGEFVPTR 80
           +K   +RT+ARSA I P  +G    VH G  Y+  E+  +MVG  L +F PTR
Sbjct: 75  SKPEMVRTHARSAIIWPAMIGALVGVHVGNGYLPVEIKPEMVGFVLSDFAPTR 127


  Database: KOG eukaryal database 04/03
    Posted date:  Apr 14, 2003  1:07 PM
  Number of letters in database: 30,389,216
  Number of sequences in database:  60,738
  
Lambda     K      H
   0.319    0.136    0.395 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,220,626
Number of Sequences: 60738
Number of extensions: 184722
Number of successful extensions: 396
Number of sequences better than 1.0e-05: 5
Number of HSP's better than  0.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 389
Number of HSP's gapped (non-prelim): 5
length of query: 91
length of database: 30,389,216
effective HSP length: 67
effective length of query: 24
effective length of database: 26,319,770
effective search space: 631674480
effective search space used: 631674480
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)