ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactVI1873 good J KOG1750 Translation, ribosomal structure and biogenesis Mitochondrial/chloroplast ribosomal protein S12
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactVI1873 671210 671710 167
(167 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YNR036c [J] KOG1750 Mitochondrial/chloroplast ribosomal protein S12 234 3e-62
SPAC4F8.06 [J] KOG1750 Mitochondrial/chloroplast ribosomal prote... 156 1e-38
AtCh002 [J] KOG1750 Mitochondrial/chloroplast ribosomal protein S12 142 2e-34
AtCh001 [J] KOG1750 Mitochondrial/chloroplast ribosomal protein S12 142 2e-34
AtMi080 [J] KOG1750 Mitochondrial/chloroplast ribosomal protein S12 126 2e-29
At2g07675 [J] KOG1750 Mitochondrial/chloroplast ribosomal protei... 118 3e-27
Hs11056056 [J] KOG1750 Mitochondrial/chloroplast ribosomal prote... 103 8e-23
7290321 [J] KOG1750 Mitochondrial/chloroplast ribosomal protein S12 100 7e-22
CE18920 [J] KOG1750 Mitochondrial/chloroplast ribosomal protein S12 83 2e-16
At5g02960 [J] KOG1749 40S ribosomal protein S23 50 1e-06
At3g09680 [J] KOG1749 40S ribosomal protein S23 50 1e-06
YPR132w [J] KOG1749 40S ribosomal protein S23 49 2e-06
YGR118w [J] KOG1749 40S ribosomal protein S23 49 2e-06
Hs4506701 [J] KOG1749 40S ribosomal protein S23 48 5e-06
CE05747 [J] KOG1749 40S ribosomal protein S23 48 5e-06
SPBP4H10.13 [J] KOG1749 40S ribosomal protein S23 48 7e-06
SPAC23C11.02c [J] KOG1749 40S ribosomal protein S23 48 7e-06
7303214 [J] KOG1749 40S ribosomal protein S23 48 7e-06
>YNR036c [J] KOG1750 Mitochondrial/chloroplast ribosomal protein S12
Length = 153
Score = 234 bits (598), Expect = 3e-62
Identities = 114/135 (84%), Positives = 124/135 (91%)
Query: 32 QRSFSYTSPIQATLNQIKRGVKPPGRKKITESPDLEVCPIRKGVVLRVMVLKPKKPNSAQ 91
QR FS T+ +QATLNQIKRG PP RKKI+ +P L+ CP RKGVVLRVMVLKPKKPNSAQ
Sbjct: 18 QRLFSSTTTMQATLNQIKRGSGPPRRKKISTAPQLDQCPQRKGVVLRVMVLKPKKPNSAQ 77
Query: 92 RKACRVRLTNGNIVSAYIPGEGHNAQEHSIVYVRGGRCQDLPGVKYHVVRGAGDLAGVVN 151
RKACRVRLTNGN+VSAYIPGEGH+AQEHSIVYVRGGRCQDLPGVKYHV+RGAGDL+GVVN
Sbjct: 78 RKACRVRLTNGNVVSAYIPGEGHDAQEHSIVYVRGGRCQDLPGVKYHVIRGAGDLSGVVN 137
Query: 152 RISSRSKYGVKKPTK 166
RISSRSKYG KKP+K
Sbjct: 138 RISSRSKYGAKKPSK 152
>SPAC4F8.06 [J] KOG1750 Mitochondrial/chloroplast ribosomal protein S12
Length = 146
Score = 156 bits (394), Expect = 1e-38
Identities = 79/136 (58%), Positives = 96/136 (70%)
Query: 29 PLQQRSFSYTSPIQATLNQIKRGVKPPGRKKITESPDLEVCPIRKGVVLRVMVLKPKKPN 88
P Q ++FS +S + TLNQ R + K +S LE P R+GV RV +KPKKPN
Sbjct: 8 PFQAQAFSSSSVMLKTLNQTIRNKEKRPEKTNKQSVALEGSPFRRGVCTRVFTVKPKKPN 67
Query: 89 SAQRKACRVRLTNGNIVSAYIPGEGHNAQEHSIVYVRGGRCQDLPGVKYHVVRGAGDLAG 148
SA RK RVRL+ G V+AYIPG GHNAQEH++V +RGGR QD PGV+YHVVRG D+AG
Sbjct: 68 SAVRKVARVRLSTGRSVTAYIPGIGHNAQEHAVVLLRGGRAQDCPGVQYHVVRGVYDIAG 127
Query: 149 VVNRISSRSKYGVKKP 164
V R++SRSKYGVKKP
Sbjct: 128 VAGRVTSRSKYGVKKP 143
>AtCh002 [J] KOG1750 Mitochondrial/chloroplast ribosomal protein S12
Length = 123
Score = 142 bits (359), Expect = 2e-34
Identities = 71/121 (58%), Positives = 86/121 (70%), Gaps = 1/121 (0%)
Query: 44 TLNQIKRGVKPPGRKKITESPDLEVCPIRKGVVLRVMVLKPKKPNSAQRKACRVRLTNGN 103
T+ Q+ R + P R +T+SP L CP R+G RV + PKKPNSA RK RVRLT+G
Sbjct: 3 TIKQLIRNTRQPIRN-VTKSPALRGCPQRRGTCTRVYTITPKKPNSALRKVARVRLTSGF 61
Query: 104 IVSAYIPGEGHNAQEHSIVYVRGGRCQDLPGVKYHVVRGAGDLAGVVNRISSRSKYGVKK 163
++AYIPG GHN QEHS+V VRGGR +DLPGV+YH+VRG D GV +R RSKYGVKK
Sbjct: 62 EITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSKYGVKK 121
Query: 164 P 164
P
Sbjct: 122 P 122
>AtCh001 [J] KOG1750 Mitochondrial/chloroplast ribosomal protein S12
Length = 123
Score = 142 bits (359), Expect = 2e-34
Identities = 71/121 (58%), Positives = 86/121 (70%), Gaps = 1/121 (0%)
Query: 44 TLNQIKRGVKPPGRKKITESPDLEVCPIRKGVVLRVMVLKPKKPNSAQRKACRVRLTNGN 103
T+ Q+ R + P R +T+SP L CP R+G RV + PKKPNSA RK RVRLT+G
Sbjct: 3 TIKQLIRNTRQPIRN-VTKSPALRGCPQRRGTCTRVYTITPKKPNSALRKVARVRLTSGF 61
Query: 104 IVSAYIPGEGHNAQEHSIVYVRGGRCQDLPGVKYHVVRGAGDLAGVVNRISSRSKYGVKK 163
++AYIPG GHN QEHS+V VRGGR +DLPGV+YH+VRG D GV +R RSKYGVKK
Sbjct: 62 EITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSKYGVKK 121
Query: 164 P 164
P
Sbjct: 122 P 122
>AtMi080 [J] KOG1750 Mitochondrial/chloroplast ribosomal protein S12
Length = 125
Score = 126 bits (316), Expect = 2e-29
Identities = 63/121 (52%), Positives = 81/121 (66%), Gaps = 1/121 (0%)
Query: 44 TLNQIKRGVKPPGRKKITESPDLEVCPIRKGVVLRVMVLKPKKPNSAQRKACRVRLTNGN 103
T NQ+ R + +++ + L+ CP + GV LRV PKKPNSA RK +VRL+N +
Sbjct: 3 TFNQLIRHGREE-KRRTDRTRALDKCPQKTGVCLRVSTRTPKKPNSALRKIAKVRLSNRH 61
Query: 104 IVSAYIPGEGHNAQEHSIVYVRGGRCQDLPGVKYHVVRGAGDLAGVVNRISSRSKYGVKK 163
+ AYIPGEGHN QEHS V +RGGR +DLPGVK+H +RG DL G+ R RSKYG +K
Sbjct: 62 DIFAYIPGEGHNLQEHSTVLIRGGRVKDLPGVKFHCIRGVKDLMGIPGRRRGRSKYGAEK 121
Query: 164 P 164
P
Sbjct: 122 P 122
>At2g07675 [J] KOG1750 Mitochondrial/chloroplast ribosomal protein S12
Length = 125
Score = 118 bits (296), Expect = 3e-27
Identities = 60/121 (49%), Positives = 79/121 (64%), Gaps = 1/121 (0%)
Query: 44 TLNQIKRGVKPPGRKKITESPDLEVCPIRKGVVLRVMVLKPKKPNSAQRKACRVRLTNGN 103
T NQ+ R + +++ + L+ CP + GV RV PKKPNSA RK +VRL+N +
Sbjct: 3 TFNQLIRHGREE-KRRTDRTRALDKCPQKTGVCPRVSTRTPKKPNSAPRKIAKVRLSNRH 61
Query: 104 IVSAYIPGEGHNAQEHSIVYVRGGRCQDLPGVKYHVVRGAGDLAGVVNRISSRSKYGVKK 163
+ A+IPGEGHN+QEHS V +RGGR +D PGVK H +RG DL G+ R RSKYG +K
Sbjct: 62 DIFAHIPGEGHNSQEHSTVLIRGGRVKDSPGVKSHCIRGVKDLMGIPGRRRGRSKYGAEK 121
Query: 164 P 164
P
Sbjct: 122 P 122
>Hs11056056 [J] KOG1750 Mitochondrial/chloroplast ribosomal protein S12
Length = 138
Score = 103 bits (258), Expect = 8e-23
Identities = 61/107 (57%), Positives = 65/107 (60%), Gaps = 2/107 (1%)
Query: 43 ATLNQIKRGVKPPGRKKITESPDLEVCPIRKGVVLRVMVLKPKKPNSAQRKACRVRLTNG 102
ATLNQ+ R + PP R P E P KGVVL KPKKPNSA RK CRVRL+ G
Sbjct: 31 ATLNQMHR-LGPPKRPPRKLGPT-EGRPQLKGVVLCTFTRKPKKPNSANRKCCRVRLSTG 88
Query: 103 NIVSAYIPGEGHNAQEHSIVYVRGGRCQDLPGVKYHVVRGAGDLAGV 149
+IPGEGH QEH IV V GGR QDLPGVK VVRG D V
Sbjct: 89 REAVCFIPGEGHTLQEHQIVLVEGGRTQDLPGVKLTVVRGKYDCGHV 135
>7290321 [J] KOG1750 Mitochondrial/chloroplast ribosomal protein S12
Length = 140
Score = 100 bits (250), Expect = 7e-22
Identities = 59/119 (49%), Positives = 73/119 (60%), Gaps = 4/119 (3%)
Query: 36 SYTSPIQ--ATLNQIKRGVKPPGRKKITESPDLEVCPIRKGVVLRVMVLKPKKPNSAQRK 93
SY + ++ A+L Q+ R P K L+ P KGVVL+ ++ KPKKPNSA RK
Sbjct: 22 SYETAVRGMASLQQMHRS--GPHIKTRPPRQPLDGKPFAKGVVLKTLIKKPKKPNSANRK 79
Query: 94 ACRVRLTNGNIVSAYIPGEGHNAQEHSIVYVRGGRCQDLPGVKYHVVRGAGDLAGVVNR 152
VRL+ G + AYIPG GHN QEH+IV R GR QD+PGVK VRG DLA VV +
Sbjct: 80 CVLVRLSTGKEMVAYIPGIGHNLQEHNIVLCRVGRLQDVPGVKLKAVRGVYDLAHVVKK 138
>CE18920 [J] KOG1750 Mitochondrial/chloroplast ribosomal protein S12
Length = 157
Score = 83.2 bits (204), Expect = 2e-16
Identities = 42/75 (56%), Positives = 51/75 (68%)
Query: 73 KGVVLRVMVLKPKKPNSAQRKACRVRLTNGNIVSAYIPGEGHNAQEHSIVYVRGGRCQDL 132
KG+VL+ ++ PKKPNS RK VRL+ G V AYIP GHN QEHS V V+GGR +DL
Sbjct: 77 KGIVLKTVIRHPKKPNSGNRKCAIVRLSTGAEVCAYIPNVGHNLQEHSQVLVKGGRRRDL 136
Query: 133 PGVKYHVVRGAGDLA 147
VK ++VRG D A
Sbjct: 137 ISVKANIVRGKYDCA 151
>At5g02960 [J] KOG1749 40S ribosomal protein S23
Length = 142
Score = 50.1 bits (118), Expect = 1e-06
Identities = 29/80 (36%), Positives = 50/80 (62%), Gaps = 8/80 (10%)
Query: 73 KGVVLRVMVLKPKKPNSAQRKACRVRL-TNGNIVSAYIPGEG--HNAQEHSIVYV----- 124
KG+VL + ++ K+PNSA RK RV+L NG ++A++P +G + +E+ V +
Sbjct: 47 KGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGR 106
Query: 125 RGGRCQDLPGVKYHVVRGAG 144
+G D+PGV++ VV+ +G
Sbjct: 107 KGHAVGDIPGVRFKVVKVSG 126
>At3g09680 [J] KOG1749 40S ribosomal protein S23
Length = 136
Score = 50.1 bits (118), Expect = 1e-06
Identities = 29/80 (36%), Positives = 50/80 (62%), Gaps = 8/80 (10%)
Query: 73 KGVVLRVMVLKPKKPNSAQRKACRVRL-TNGNIVSAYIPGEG--HNAQEHSIVYV----- 124
KG+VL + ++ K+PNSA RK RV+L NG ++A++P +G + +E+ V +
Sbjct: 41 KGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGR 100
Query: 125 RGGRCQDLPGVKYHVVRGAG 144
+G D+PGV++ VV+ +G
Sbjct: 101 KGHAVGDIPGVRFKVVKVSG 120
>YPR132w [J] KOG1749 40S ribosomal protein S23
Length = 145
Score = 49.3 bits (116), Expect = 2e-06
Identities = 31/80 (38%), Positives = 51/80 (63%), Gaps = 8/80 (10%)
Query: 73 KGVVLRVMVLKPKKPNSAQRKACRVRL-TNGNIVSAYIPGEG--HNAQEHSIVYVRG--- 126
KG+VL + ++ K+PNSA RK RV+L NG V+A++P +G + E+ V + G
Sbjct: 50 KGIVLEKLGIESKQPNSAIRKCVRVQLIKNGKKVTAFVPNDGCLNFVDENDEVLLAGFGR 109
Query: 127 -GRCQ-DLPGVKYHVVRGAG 144
G+ + D+PGV++ VV+ +G
Sbjct: 110 KGKAKGDIPGVRFKVVKVSG 129
>YGR118w [J] KOG1749 40S ribosomal protein S23
Length = 145
Score = 49.3 bits (116), Expect = 2e-06
Identities = 31/80 (38%), Positives = 51/80 (63%), Gaps = 8/80 (10%)
Query: 73 KGVVLRVMVLKPKKPNSAQRKACRVRL-TNGNIVSAYIPGEG--HNAQEHSIVYVRG--- 126
KG+VL + ++ K+PNSA RK RV+L NG V+A++P +G + E+ V + G
Sbjct: 50 KGIVLEKLGIESKQPNSAIRKCVRVQLIKNGKKVTAFVPNDGCLNFVDENDEVLLAGFGR 109
Query: 127 -GRCQ-DLPGVKYHVVRGAG 144
G+ + D+PGV++ VV+ +G
Sbjct: 110 KGKAKGDIPGVRFKVVKVSG 129
>Hs4506701 [J] KOG1749 40S ribosomal protein S23
Length = 143
Score = 48.1 bits (113), Expect = 5e-06
Identities = 30/79 (37%), Positives = 49/79 (61%), Gaps = 8/79 (10%)
Query: 73 KGVVLRVMVLKPKKPNSAQRKACRVRL-TNGNIVSAYIPGEG--HNAQEHSIVYV----- 124
KG+VL + ++ K+PNSA RK RV+L NG ++A++P +G + +E+ V V
Sbjct: 48 KGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGR 107
Query: 125 RGGRCQDLPGVKYHVVRGA 143
+G D+PGV++ VV+ A
Sbjct: 108 KGHAVGDIPGVRFKVVKVA 126
>CE05747 [J] KOG1749 40S ribosomal protein S23
Length = 143
Score = 48.1 bits (113), Expect = 5e-06
Identities = 31/79 (39%), Positives = 50/79 (63%), Gaps = 8/79 (10%)
Query: 73 KGVVLRVMVLKPKKPNSAQRKACRVRL-TNGNIVSAYIPGEG--HNAQEHSIVYVRG-GR 128
KG+VL + ++ K+PNSA RK RV+L NG ++A++P +G + +E+ V V G GR
Sbjct: 48 KGIVLEKIGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFVEENDEVLVSGFGR 107
Query: 129 ----CQDLPGVKYHVVRGA 143
D+PGV++ +V+ A
Sbjct: 108 SGHAVGDIPGVRFKIVKVA 126
>SPBP4H10.13 [J] KOG1749 40S ribosomal protein S23
Length = 143
Score = 47.8 bits (112), Expect = 7e-06
Identities = 31/80 (38%), Positives = 51/80 (63%), Gaps = 8/80 (10%)
Query: 73 KGVVLRVMVLKPKKPNSAQRKACRVRL-TNGNIVSAYIPGEG--HNAQEHSIVYVRG--- 126
KG+V+ + ++ K+PNSA RK RV+L NG V+A++P +G + E+ V + G
Sbjct: 48 KGIVVEKIGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPHDGCLNFVDENDEVLLSGFGR 107
Query: 127 -GRCQ-DLPGVKYHVVRGAG 144
G+ + D+PGV++ VV+ AG
Sbjct: 108 KGKAKGDIPGVRFKVVKVAG 127
>SPAC23C11.02c [J] KOG1749 40S ribosomal protein S23
Length = 143
Score = 47.8 bits (112), Expect = 7e-06
Identities = 31/80 (38%), Positives = 51/80 (63%), Gaps = 8/80 (10%)
Query: 73 KGVVLRVMVLKPKKPNSAQRKACRVRL-TNGNIVSAYIPGEG--HNAQEHSIVYVRG--- 126
KG+V+ + ++ K+PNSA RK RV+L NG V+A++P +G + E+ V + G
Sbjct: 48 KGIVVEKIGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPHDGCLNFVDENDEVLLSGFGR 107
Query: 127 -GRCQ-DLPGVKYHVVRGAG 144
G+ + D+PGV++ VV+ AG
Sbjct: 108 KGKAKGDIPGVRFKVVKVAG 127
>7303214 [J] KOG1749 40S ribosomal protein S23
Length = 216
Score = 47.8 bits (112), Expect = 7e-06
Identities = 30/79 (37%), Positives = 49/79 (61%), Gaps = 8/79 (10%)
Query: 73 KGVVLRVMVLKPKKPNSAQRKACRVRL-TNGNIVSAYIPGEG--HNAQEHSIVYV----- 124
KG+VL + ++ K+PNSA RK RV+L NG ++A++P +G + +E+ V V
Sbjct: 121 KGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPRDGSLNYIEENDEVLVAGFGR 180
Query: 125 RGGRCQDLPGVKYHVVRGA 143
+G D+PGV++ VV+ A
Sbjct: 181 KGHAVGDIPGVRFKVVKVA 199
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.319 0.137 0.402
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,317,747
Number of Sequences: 60738
Number of extensions: 371094
Number of successful extensions: 714
Number of sequences better than 1.0e-05: 18
Number of HSP's better than 0.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 697
Number of HSP's gapped (non-prelim): 18
length of query: 167
length of database: 30,389,216
effective HSP length: 98
effective length of query: 69
effective length of database: 24,436,892
effective search space: 1686145548
effective search space used: 1686145548
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)