ORF      STATUS       Function Best COG  Functional category                                          Pathways and functional systems
r_klactVI1909   suspect: LH   U     KOG1761  Intracellular trafficking, secretion, and vesicular transport  Signal recognition particle, subunit Srp14

BLASTP 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= r_klactVI1909 680589  681041 151  
         (151 letters)

Database: KOG eukaryal database 04/03 
           60,738 sequences; 30,389,216 total letters

Searching..................................................done

Color Key for Alignment Scores:   


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

YDL092w [U] KOG1761 Signal recognition particle subunit Srp14          57   7e-09

>YDL092w [U] KOG1761 Signal recognition particle subunit Srp14
          Length = 146

 Score = 57.4 bits (137), Expect = 7e-09
 Identities = 35/118 (29%), Positives = 65/118 (54%), Gaps = 3/118 (2%)

Query: 22  LSHDEFFVKLEKAFRMSKVSHNQLKVSLKRDLGSHHVQKPNELDVTSNPTGDISKMSESK 81
           LS   F  K+ + F+ +   H  ++++ KR +    V+   E D T++P  D+SK  ++ 
Sbjct: 7   LSPGAFLSKVPEFFQTANEKHITVRLTAKRLIEHDPVEGNLEFDSTNHPDYDVSK--KAS 64

Query: 82  RLKQNAQPDTKPYRLIVLVSMPYDGKRTKFFTLVDSKTLDKFWKDYVNVVKTSMSGLI 139
            +  +++ D + Y L++ +S     K+TK  T+V +  LD+FW++Y +V K  M  LI
Sbjct: 65  EISVSSRSD-REYPLLIRMSYGSHDKKTKCSTVVKASELDQFWQEYSSVFKGGMQNLI 121


  Database: KOG eukaryal database 04/03
    Posted date:  Apr 14, 2003  1:07 PM
  Number of letters in database: 30,389,216
  Number of sequences in database:  60,738
  
Lambda     K      H
   0.314    0.131    0.368 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,410,787
Number of Sequences: 60738
Number of extensions: 323678
Number of successful extensions: 783
Number of sequences better than 1.0e-05: 1
Number of HSP's better than  0.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 782
Number of HSP's gapped (non-prelim): 1
length of query: 151
length of database: 30,389,216
effective HSP length: 97
effective length of query: 54
effective length of database: 24,497,630
effective search space: 1322872020
effective search space used: 1322872020
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)