ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactVI1937 good A KOG0796 RNA processing and modification Spliceosome subunit
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactVI1937 690556 689789 -256
(256 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YDL087c [A] KOG0796 Spliceosome subunit 232 3e-61
SPCC16A11.13 [A] KOG0796 Spliceosome subunit 147 1e-35
Hs8922297 [A] KOG0796 Spliceosome subunit 127 2e-29
7293971 [A] KOG0796 Spliceosome subunit 127 2e-29
Hs7706310 [A] KOG0796 Spliceosome subunit 122 4e-28
Hs18566076 [A] KOG0796 Spliceosome subunit 122 4e-28
CE01766 [A] KOG0796 Spliceosome subunit 99 8e-21
Hs19923485 [A] KOG0796 Spliceosome subunit 96 6e-20
At5g51410 [A] KOG0796 Spliceosome subunit 89 5e-18
At3g03340 [A] KOG0796 Spliceosome subunit 87 2e-17
CE08893 [A] KOG0796 Spliceosome subunit 79 8e-15
CE27458 [A] KOG0796 Spliceosome subunit 77 2e-14
At5g17440 [A] KOG0796 Spliceosome subunit 67 2e-11
ECU10g0840 [A] KOG0796 Spliceosome subunit 60 3e-09
7290737 [A] KOG0796 Spliceosome subunit 52 8e-07
>YDL087c [A] KOG0796 Spliceosome subunit
Length = 261
Score = 232 bits (592), Expect = 3e-61
Identities = 116/232 (50%), Positives = 162/232 (69%), Gaps = 12/232 (5%)
Query: 6 EQRKLISQLMSSAAT------SH-----GLTSPSTCKSFIIGHCPYDLFQETKQPMGHCP 54
EQRKL+ QLM + SH GL P CKS+++G CPYDLFQ TKQ +G CP
Sbjct: 10 EQRKLVEQLMGRDFSFRHNRYSHQKRDLGLHDPKICKSYLVGECPYDLFQGTKQSLGKCP 69
Query: 55 RIHSVSHKMQYERDVKKGKKYPEFDLEHYSILKKILSDCDVQIEMAHKKLQHH-EEHSKL 113
++H HK+QYER+VK+GK +PEF+ E+ +IL + +++C+ QI +A + L+H EE K+
Sbjct: 70 QMHLTKHKIQYEREVKQGKTFPEFEREYLAILSRFVNECNGQISVALQNLKHTAEERMKI 129
Query: 114 AALLQAVNQLESKCALMLSEIDMLIQNEEVMKAMIQSCKYNKLQTERDTLSEKCRQMNEN 173
+ + ++ L+ + LM EID LI+ +EV M+QS K +L ++R ++++ R + EN
Sbjct: 130 QQVTEELDVLDVRIGLMGQEIDSLIRADEVSMGMLQSVKLQELISKRKEVAKRVRNITEN 189
Query: 174 TGQSAQQKLQVCRVCGAYLSRLDTDRRLADHFMGKLHLGYVTMRKELDMVKK 225
GQSAQQKLQVC VCGAYLSRLDTDRRLADHF+GK+HLGYV MR++ D + K
Sbjct: 190 VGQSAQQKLQVCEVCGAYLSRLDTDRRLADHFLGKIHLGYVKMREDYDRLMK 241
>SPCC16A11.13 [A] KOG0796 Spliceosome subunit
Length = 264
Score = 147 bits (371), Expect = 1e-35
Identities = 87/234 (37%), Positives = 135/234 (57%), Gaps = 11/234 (4%)
Query: 6 EQRKLISQLMSSAA---TSHGL---TSPSTCKSFIIGHCPYDLFQETKQPMGHCPRIHSV 59
EQRK+I QLM S TS GL T C+SF+ G CP+D+F TK +G CP+IHS
Sbjct: 4 EQRKIIEQLMGSNLSNFTSRGLVHFTDRKVCRSFLCGICPHDIFTNTKMDLGPCPKIHSD 63
Query: 60 SHKMQYERDVKKGKKYPEFDLEHYSILKKILSDCDVQIEMAHKKLQH-HEEHSKLAALLQ 118
K YER E+D + L++ + DC+ +I++A + + EE ++ L++
Sbjct: 64 KLKSDYERASYSHDYGYEWD--YLEDLERHVDDCNKRIDIAEARREKTKEEEERIDELMR 121
Query: 119 AVNQLESKCALMLSEIDMLIQNEEVMKAMIQSCKYNKLQTERDTLSEKCRQMNENTGQSA 178
+ + ++++E++ L + + V A+ + N+L+T R L ++ MNE Q++
Sbjct: 122 DIIHTDHSIEVIITEMEALAKRKLVNDAVKHFIELNRLKTYRKELYDEVISMNEIPSQAS 181
Query: 179 --QQKLQVCRVCGAYLSRLDTDRRLADHFMGKLHLGYVTMRKELDMVKKRLHEQ 230
QKLQVC +C AYLSRLD DRRLADHF GK+HLGY +R ++ +L ++
Sbjct: 182 TTHQKLQVCDICSAYLSRLDNDRRLADHFSGKMHLGYAMLRNIARDLRAQLEDR 235
>Hs8922297 [A] KOG0796 Spliceosome subunit
Length = 325
Score = 127 bits (319), Expect = 2e-29
Identities = 74/238 (31%), Positives = 130/238 (54%), Gaps = 11/238 (4%)
Query: 1 MSAILEQRKLISQLMSSAATSHG------LTSPSTCKSFIIGHCPYDLFQETKQPMGHCP 54
MSA + R L+ QLM +A T CKS ++ CP+D+ T+ +G C
Sbjct: 1 MSAQAQMRALLDQLMGTARDGDETRQRVKFTDDRVCKSHLLDCCPHDILAGTRMDLGECT 60
Query: 55 RIHSVSHKMQYERDVKKGKKYPEFDLEHYSILKKILSDCDVQIEMAHKKLQHHEEH--SK 112
+IH ++ + YE K+ + F+L+ L+ +++CD + E+A K+L +E ++
Sbjct: 61 KIHDLALRADYEIASKERDLF--FELDAMDHLESFIAECDRRTELAKKRLAETQEEISAE 118
Query: 113 LAALLQAVNQLESKCALMLSEIDMLIQNEEVMKAMIQSCKYNKLQTERDTLSEKCRQMNE 172
++A + V++L + +L++ + L V ++ + K++ ++ E+ R +
Sbjct: 119 VSAKAEKVHELNEEIGKLLAKAEQLGAEGNVDESQKILMEVEKVRAKKKEAEEEYRN-SM 177
Query: 173 NTGQSAQQKLQVCRVCGAYLSRLDTDRRLADHFMGKLHLGYVTMRKELDMVKKRLHEQ 230
QQKL+VC VC AYL D DRRLADHF GKLHLG++ +R++LD ++K + E+
Sbjct: 178 PASSFQQQKLRVCEVCSAYLGLHDNDRRLADHFGGKLHLGFIQIREKLDQLRKTVAEK 235
>7293971 [A] KOG0796 Spliceosome subunit
Length = 420
Score = 127 bits (318), Expect = 2e-29
Identities = 80/261 (30%), Positives = 137/261 (51%), Gaps = 11/261 (4%)
Query: 1 MSAILEQRKLISQLMSSAATSHG----LTSPSTCKSFIIGHCPYDLFQETKQPMGHCPRI 56
MSA + R ++ QLM + + P CKSF++ CP+D+ T+ +G CP++
Sbjct: 8 MSATDQMRAMLDQLMGTTRNGDERQLKFSDPRVCKSFLLDCCPHDILASTRMDLGECPKV 67
Query: 57 HSVSHKMQYERDVKKGKKYPEFDLEHYSILKKILSDCDVQIEMAHKKLQHHEEH--SKLA 114
H ++ + YE K Y +D+E L+ ++DCD + + A ++L+ +E +++A
Sbjct: 68 HDLAFRADYESAAKTRDYY--YDIEAMEHLQAFIADCDRRTDSAKQRLKETQEELTAEVA 125
Query: 115 ALLQAVNQLESKCALMLSEIDMLIQNEEVMKAMIQSCKYNKLQTERDTLSEKCR-QMNEN 173
AV+ L + L++ + L + EV +M + +L+ ++ + R M +
Sbjct: 126 EKANAVHGLAEEIGKKLAKAEALGEAGEVEDSMELMKEIEELRAKKIKAEHEYRTSMPAS 185
Query: 174 TGQSAQQKLQVCRVCGAYLSRLDTDRRLADHFMGKLHLGYVTMRKELDMVKKRLHEQGTD 233
T Q QQKL+VC VC AYL D D RLADHF GKLHLG++T+R++L ++K + +
Sbjct: 186 TYQ--QQKLRVCEVCSAYLGIHDNDIRLADHFGGKLHLGFLTIREKLIELEKTAAPRKAE 243
Query: 234 LHTYLPQTRRHQKAVYRGKSY 254
L T R + R + +
Sbjct: 244 LKRTGKMTDREDEGRGRNRYF 264
>Hs7706310 [A] KOG0796 Spliceosome subunit
Length = 402
Score = 122 bits (307), Expect = 4e-28
Identities = 79/276 (28%), Positives = 139/276 (49%), Gaps = 26/276 (9%)
Query: 1 MSAILEQRKLISQLMSSAATSHG------LTSPSTCKSFIIGHCPYDLFQETKQPMGHCP 54
MSA + R ++ QLM ++ + CKS ++ CP+D+ T+ +G C
Sbjct: 1 MSAQAQMRAMLDQLMGTSRDGDTTRQRIKFSDDRVCKSHLLNCCPHDVLSGTRMDLGECL 60
Query: 55 RIHSVSHKMQYERDVKKGKKYPEFDLEHYSILKKILSDCDVQIEMAHKKLQHHEEH--SK 112
++H ++ + YE K+ + F+L+ L+ ++DCD + E+A K+L +E ++
Sbjct: 61 KVHDLALRADYEIASKEQDFF--FELDAMDHLQSFIADCDRRTEVAKKRLAETQEEISAE 118
Query: 113 LAALLQAVNQLESKCALMLSEIDMLIQNEEVMKAMIQSCKYNKLQTERDTLSEKCRQMNE 172
+AA + V++L + +L++++ L V ++ + K + ++ E R +
Sbjct: 119 VAAKAERVHELNEEIGKLLAKVEQLGAEGNVEESQKVMDEVEKARAKKREAEEVYRN-SM 177
Query: 173 NTGQSAQQKLQVCRVCGAYLSRLDTDRRLADHFMGKLHLGYVTMRKELDMVK-------- 224
QQKL+VC VC AYL D DRRLADHF GKLHLG++ +R++L+ +K
Sbjct: 178 PASSFQQQKLRVCEVCSAYLGLHDNDRRLADHFGGKLHLGFIEIREKLEELKRVVAEKQE 237
Query: 225 -------KRLHEQGTDLHTYLPQTRRHQKAVYRGKS 253
KR E+ + L ++R H K R +S
Sbjct: 238 KRNQERLKRREEREREEREKLRRSRSHSKNPKRSRS 273
>Hs18566076 [A] KOG0796 Spliceosome subunit
Length = 392
Score = 122 bits (307), Expect = 4e-28
Identities = 79/276 (28%), Positives = 139/276 (49%), Gaps = 26/276 (9%)
Query: 1 MSAILEQRKLISQLMSSAATSHG------LTSPSTCKSFIIGHCPYDLFQETKQPMGHCP 54
MSA + R ++ QLM ++ + CKS ++ CP+D+ T+ +G C
Sbjct: 1 MSAQAQMRAMLDQLMGTSRDGDTTRQRIKFSDDRVCKSHLLNCCPHDVLSGTRMDLGECL 60
Query: 55 RIHSVSHKMQYERDVKKGKKYPEFDLEHYSILKKILSDCDVQIEMAHKKLQHHEEH--SK 112
++H ++ + YE K+ + F+L+ L+ ++DCD + E+A K+L +E ++
Sbjct: 61 KVHDLALRADYEIASKEQDFF--FELDAMDHLQSFIADCDRRTEVAKKRLAETQEEISAE 118
Query: 113 LAALLQAVNQLESKCALMLSEIDMLIQNEEVMKAMIQSCKYNKLQTERDTLSEKCRQMNE 172
+AA + V++L + +L++++ L V ++ + K + ++ E R +
Sbjct: 119 VAAKAERVHELNEEIGKLLAKVEQLGAEGNVEESQKVMDEVEKARAKKREAEEVYRN-SM 177
Query: 173 NTGQSAQQKLQVCRVCGAYLSRLDTDRRLADHFMGKLHLGYVTMRKELDMVK-------- 224
QQKL+VC VC AYL D DRRLADHF GKLHLG++ +R++L+ +K
Sbjct: 178 PASSFQQQKLRVCEVCSAYLGLHDNDRRLADHFGGKLHLGFIEIREKLEELKRVVAEKQE 237
Query: 225 -------KRLHEQGTDLHTYLPQTRRHQKAVYRGKS 253
KR E+ + L ++R H K R +S
Sbjct: 238 KRNQERLKRREEREREEREKLRRSRSHSKNPKRSRS 273
>CE01766 [A] KOG0796 Spliceosome subunit
Length = 313
Score = 98.6 bits (244), Expect = 8e-21
Identities = 69/267 (25%), Positives = 132/267 (48%), Gaps = 26/267 (9%)
Query: 6 EQRKLISQLMSSAAT------SHGLTSPSTCKSFIIGHCPYDLFQETK-QPMGHCPRIHS 58
+ R +I+QLM S S S C++F++G CP+D+ +++ Q + C ++H
Sbjct: 4 QMRDMIAQLMGSQHVDNKEKPSMPFDHHSVCRAFLLGVCPHDMVPDSRLQNVVSCRKVHE 63
Query: 59 VSHKMQYERDVKKGKKYPEFDLEHYSILKKILSDCDVQIEMAHKKLQHHEEHSKLAAL-- 116
+HK YER K+ + +D++ + I++ + D++I +KL+ + A
Sbjct: 64 PAHKADYERAQKEKDHF--YDVDAFEIIEHAVHLVDIEIAKVREKLEDDVKTQTSQAADS 121
Query: 117 -LQAVNQLESKCALMLSEIDMLIQNEEVMKAMIQSCKYNKLQTERDTLSEKCRQMNENTG 175
+ V ++E K A + +I+ L ++ ++M KL + L EK +++ ++
Sbjct: 122 KAKQVAEIEEKIAKNVDDIEKLGNEGKIEESM-------KLHKYVEELREKIQEIEDSQT 174
Query: 176 Q-------SAQQKLQVCRVCGAYLSRLDTDRRLADHFMGKLHLGYVTMRKELDMVKKRLH 228
+ S KL+VC CGA L+ D + R+ADH+ GK+H+G V R+ +K+ +
Sbjct: 175 EVKTAGPGSNSAKLRVCEDCGAQLNITDHESRIADHYNGKMHIGMVETRETYLKMKETID 234
Query: 229 EQGTDLHTYLPQTRRHQKAVYRGKSYR 255
E+ + L R +Q+ G+ R
Sbjct: 235 ERRKEREEKLGSQRGYQRRESYGRRDR 261
>Hs19923485 [A] KOG0796 Spliceosome subunit
Length = 432
Score = 95.5 bits (236), Expect = 6e-20
Identities = 60/210 (28%), Positives = 103/210 (48%), Gaps = 12/210 (5%)
Query: 28 STCKSFIIGHCPYDLFQETKQPMGHCPRIHSVSHKMQYERDVKKGKKYPEFDLEHYSILK 87
S CK ++ G CP +LF T+ +G C +IH + + QYE+ + K E D Y L+
Sbjct: 33 SVCKYYLCGFCPAELFTNTRSDLGPCEKIHDENLRKQYEKSSRFMKVGYERDFLRY--LQ 90
Query: 88 KILSDCDVQIEMAHKKLQHHEEHSKLAALLQAVNQLESKCALMLSEIDMLIQNEE----- 142
+L++ + +I H +L + A + E K ++ +ID+L+Q E
Sbjct: 91 SLLAEVERRIRRGHARLALSQNQQSSGAA-GPTGKNEEKIQVLTDKIDVLLQQIEELGSE 149
Query: 143 --VMKAMIQSCKYNKLQTERDTLSEKCRQMNENTGQSAQQKLQVCRVCGAYLSRLDTDRR 200
V +A +L+ ER+ L + Q Q ++VC VCGA+L D R
Sbjct: 150 GKVEEAQGMMKLVEQLKEERELLRSTTSTIESFAAQEKQ--MEVCEVCGAFLIVGDAQSR 207
Query: 201 LADHFMGKLHLGYVTMRKELDMVKKRLHEQ 230
+ DH MGK H+GY ++ ++ +K++L ++
Sbjct: 208 VDDHLMGKQHMGYAKIKATVEELKEKLRKR 237
>At5g51410 [A] KOG0796 Spliceosome subunit
Length = 334
Score = 89.4 bits (220), Expect = 5e-18
Identities = 60/228 (26%), Positives = 103/228 (44%), Gaps = 22/228 (9%)
Query: 7 QRKLISQLMSSAATSHGLTSPS-------------TCKSFIIGHCPYDLFQETKQPMGHC 53
QR L+ +LM +A LT C +++ CP+DLF TK +G C
Sbjct: 4 QRALLDELMGAA---RNLTDEERRGFKEVKWDDREVCAFYMVRFCPHDLFVNTKSDLGAC 60
Query: 54 PRIHSVSHKMQYERDVKKGKKYPEFDLEHYSILKKILSDCDVQIEMAHKKLQHHEE---- 109
RIH K +E + P+F+ E +K+++D D ++ ++L E
Sbjct: 61 SRIHDPKLKESFENSPRHDSYVPKFEAELAQFCEKLVNDLDRKVRRGRERLAQEVEPVPP 120
Query: 110 HSKLAALLQAVNQLESKCALMLSEIDMLIQNEEVMKAMIQSCKYNKLQTERDTLSEKCRQ 169
S A + ++ LE K +L +++ L + +V +A K L E+ L + R
Sbjct: 121 PSLSAEKAEQLSVLEEKVKNLLEQVEALGEEGKVDEAEALMRKVEGLNAEKTVLLQ--RP 178
Query: 170 MNENTGQSAQQKLQVCRVCGAYLSRLDTDRRLADHFMGKLHLGYVTMR 217
++ + ++K+ +C VCG++L D R H GK H+GY +R
Sbjct: 179 TDKVLAMAQEKKMALCEVCGSFLVANDAVERTQSHVTGKQHVGYGLVR 226
>At3g03340 [A] KOG0796 Spliceosome subunit
Length = 385
Score = 87.0 bits (214), Expect = 2e-17
Identities = 73/253 (28%), Positives = 114/253 (44%), Gaps = 67/253 (26%)
Query: 30 CKSFIIGHCPYDLFQETKQPMGHCPRIHSVSHKMQY-------------ERDVKKG---- 72
C+ ++ G CP+DLFQ TK MG CP++HS+ + +Y E D K
Sbjct: 33 CRLYLSGLCPHDLFQLTKMDMGPCPKVHSLQLRKEYPLFTIGRALKRLQEEDAKAAIAIS 92
Query: 73 ----KKYPEFDLEHYSILKKILSDCDV-----QIEMAHKKLQHHEEHSKLAALLQAVNQL 123
+ PE LE +K+ + + D+ ++++ + L+ EE A QAV L
Sbjct: 93 VSEVTQSPEI-LELSEKIKEKMKEADIHDLEGKMDLKIRALELVEEMRTKRADQQAVLLL 151
Query: 124 ES------------------------------------KCALMLSEIDMLIQNEEVMKAM 147
E+ K A L E M+ +E KA+
Sbjct: 152 EAFNKDRASLPQPVPAQPPSSELPPPDPRTQEMINEKLKKAEDLGEQGMV---DEAQKAL 208
Query: 148 IQSCKYNKLQTERDTLSEKCRQMNENTGQSAQQKLQVCRVCGAYLSRLDTDRRLADHFMG 207
++ KL R+ ++ + + + QKL++C +CGA+LS D+DRRLADHF G
Sbjct: 209 EEAEALKKLTVRREPPADSTKYTAVDV-RITDQKLRLCDICGAFLSVYDSDRRLADHFGG 267
Query: 208 KLHLGYVTMRKEL 220
KLHLGY+ +R +L
Sbjct: 268 KLHLGYMLVRDKL 280
>CE08893 [A] KOG0796 Spliceosome subunit
Length = 369
Score = 78.6 bits (192), Expect = 8e-15
Identities = 53/213 (24%), Positives = 93/213 (42%), Gaps = 16/213 (7%)
Query: 27 PSTCKSFIIGHCPYDLFQETKQPMGHCPRIHSVSHKMQYERDVKKGKKYPEFDLEHYSIL 86
P C F++G CP+D+F TK +G C +H + + Y + G+ E L + +
Sbjct: 34 PDICPYFLVGFCPHDMFINTKADLGACQLVHDDNLRRLYPESPEYGQLGFERRLMRFLVQ 93
Query: 87 ------KKILSDCDVQIEMAHKKLQHHEEHSKLAALLQAVNQLESKCALMLSEIDMLIQN 140
++I + D M + EE + L +N ++ M+ + +
Sbjct: 94 LDEDNQRRIRKNKDKLSGMDDSGKRKLEEEKRQVQL--EINSIDDVLKNMIRDAEQAGSE 151
Query: 141 EEVMKAMIQSCKYNKLQTERDTLSEKCRQMNENTGQS--------AQQKLQVCRVCGAYL 192
V K + ++ E+ L EK QMNE Q+ A + ++VC VCG+ L
Sbjct: 152 GNVTKCQEIVARSEMVEAEKRGLEEKLSQMNEPNPQAMPPMLDEMAIKPMEVCEVCGSML 211
Query: 193 SRLDTDRRLADHFMGKLHLGYVTMRKELDMVKK 225
D +R+ +H GK+H G+ +R + +KK
Sbjct: 212 IVNDAQQRIEEHLTGKMHTGFQKIRTMIQQLKK 244
>CE27458 [A] KOG0796 Spliceosome subunit
Length = 339
Score = 77.0 bits (188), Expect = 2e-14
Identities = 60/247 (24%), Positives = 106/247 (42%), Gaps = 49/247 (19%)
Query: 27 PSTCKSFIIGHCPYDLFQETKQPMGHCP-RIHSVSHKMQYERDVKKGKKYPEFDLEHYSI 85
P+ C F++G C +D+F+ TK +G C H + K Y+ KK + F+
Sbjct: 32 PNVCTDFLVGFCTHDIFRNTKNDLGFCKYTTHDENLKNSYKNSDKKWRM--GFEKRFLER 89
Query: 86 LKKILSDCDVQIEMAHKKLQHHEEH----------------SKLAALLQAVNQLESKCAL 129
+++I D +K+Q HE+ K+ + Q QL K
Sbjct: 90 IRRIHED-------VRRKIQKHEDRLAVTQGESKSAEETFGQKILEIEQRREQLTKKMED 142
Query: 130 MLSEIDMLIQNEEVMKAMIQSCKYNKLQTERDTL--------SEKCRQMN-ENTGQSAQQ 180
++ E + + V A + +K + E + L SEK R +N E + +
Sbjct: 143 LMDEAALEGEKGNVDAAQTAVDRADKAKVEVEELTQEAEKLKSEKERAINMEENVTAGNR 202
Query: 181 KLQVCRVCGAYLSRLDTDRRLADHFMGKLHLGY--------------VTMRKELDMVKKR 226
++QVC++CG ++ + D +R+ DH GKLH+ Y T +++ +M +KR
Sbjct: 203 QMQVCQICGCFMLQNDAPQRVDDHLTGKLHIAYQQISDTIKTIELEMQTSQQKAEMKRKR 262
Query: 227 LHEQGTD 233
+ TD
Sbjct: 263 SRSRSTD 269
>At5g17440 [A] KOG0796 Spliceosome subunit
Length = 381
Score = 67.4 bits (163), Expect = 2e-11
Identities = 37/106 (34%), Positives = 61/106 (56%), Gaps = 5/106 (4%)
Query: 141 EEVMKAMIQSCKYNKLQTERDTLSEKCRQMNENTGQSAQQKLQVCRVCGAYLSRLDTDRR 200
+E KA+ ++ KL ++ + + + + + QKL++C +CGA+LS D+DRR
Sbjct: 204 DEAQKALEEAEALKKLTARQEPVVDSTKYTAADV-RITDQKLRLCDICGAFLSVYDSDRR 262
Query: 201 LADHFMGKLHLGYVTMRKELDMVKKRLHEQGTDLHTYLPQTRRHQK 246
LADHF GKLHLGY+ +R +L L E+ +H + RR ++
Sbjct: 263 LADHFGGKLHLGYMLIRDKL----AELQEEKNKVHKERVEERRSKE 304
>ECU10g0840 [A] KOG0796 Spliceosome subunit
Length = 245
Score = 60.1 bits (144), Expect = 3e-09
Identities = 46/203 (22%), Positives = 94/203 (45%), Gaps = 16/203 (7%)
Query: 25 TSPSTCKSFIIGHCPYDLFQETKQPMGHCPRI-HSVSHKMQYERDVKKGKKYPEFDLEHY 83
T C ++ CP++LF+ T++ +G C H +K +Y R+ ++ + E++ E
Sbjct: 28 TKKDVCIYMLVSFCPFELFRNTRRSIGKCRYTSHEEYYKAEYNRNGRE--RAEEYEWEFV 85
Query: 84 SILKKILSDCDVQIEMAHKKLQHHEEHSKLAALLQAVNQLESKCALMLSEIDMLIQNEEV 143
+L +I+ VQ + + L+ + AL + + E + + L + +V
Sbjct: 86 RLLVEIV--LSVQDGIRARGLEDRTD----PALFGKIKEKEELFNRVYESVGELGMSGDV 139
Query: 144 MKAMIQSCKYNKLQTERDTLSEKCRQMNENTGQSAQQKLQVCRVCGAYLSRLDTDRRLAD 203
+A + +++ E + + E N G ++ C +CG L DT ++
Sbjct: 140 ERACSAFNECERIREELERIKEAYYVKNNGAG------MERCGICGVNLVLSDTKAKVDR 193
Query: 204 HFMGKLHLGYVTMRKEL-DMVKK 225
H G+LH G++ +R +L D++KK
Sbjct: 194 HLNGRLHRGHLLVRSKLADLLKK 216
>7290737 [A] KOG0796 Spliceosome subunit
Length = 414
Score = 52.0 bits (123), Expect = 8e-07
Identities = 49/196 (25%), Positives = 78/196 (39%), Gaps = 18/196 (9%)
Query: 73 KKYPEFDLEHYSILKKILSDCDVQIEMAHKKLQHHEEHSKLAALLQAVNQLESKCALMLS 132
K+ E ++ Y K +S + + A +LQHH S + + A L
Sbjct: 167 KEEKEQLVQQYEAHHKAISSISLT-KSAEDELQHHPRSSPVTNPSEESPTTPLPAATTLD 225
Query: 133 EI-DMLIQNEEVMKAMIQSCKYNKLQTERDTLSEKCRQMNENTGQSA--QQKLQVCRVCG 189
E D + + D SEK A +++++VC +CG
Sbjct: 226 EAPDAAPSSAQAAVTTTDDAGEAAGAASEDKTSEKTDSKAAGWSHDAMPEKQMKVCEICG 285
Query: 190 AYLSRLDTDRRLADHFMGKLHLGYVTMR-----------KELDMVKKRLHEQGTD-LHTY 237
A+L D +R+ DH MGK HLGY +R KE + ++R E H+Y
Sbjct: 286 AFLIVGDAQQRIEDHLMGKQHLGYSKLRNAVAEINEARQKEREQEERRRREGRVQRFHSY 345
Query: 238 LPQTRRHQKAVYRGKS 253
+RR ++ YR +S
Sbjct: 346 --DSRREPRSEYRERS 359
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.319 0.131 0.378
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,811,967
Number of Sequences: 60738
Number of extensions: 607978
Number of successful extensions: 2155
Number of sequences better than 1.0e-05: 15
Number of HSP's better than 0.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 2120
Number of HSP's gapped (non-prelim): 18
length of query: 256
length of database: 30,389,216
effective HSP length: 104
effective length of query: 152
effective length of database: 24,072,464
effective search space: 3659014528
effective search space used: 3659014528
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)