ORF      STATUS       Function Best COG  Functional category                                          Pathways and functional systems
r_klactVI1944   suspect: LH   O     KOG2447  Posttranslational modification, protein turnover, chaperones   Oligosaccharyltransferase, delta subunit (ribophorin II)

BLASTP 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= r_klactVI1944 693035 692241 -265 
         (265 letters)

Database: KOG eukaryal database 04/03 
           60,738 sequences; 30,389,216 total letters

Searching..................................................done

Color Key for Alignment Scores:   


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

YMR149w [O] KOG2447 Oligosaccharyltransferase delta subunit (rib...    86   7e-17

>YMR149w [O] KOG2447 Oligosaccharyltransferase delta subunit (ribophorin II)
          Length = 286

 Score = 85.5 bits (210), Expect = 7e-17
 Identities = 61/201 (30%), Positives = 107/201 (52%), Gaps = 19/201 (9%)

Query: 59  SETLKLSFVVDQELE--QANVLVGLPSENLEAGYTLK-KQSGSSDKFSLAIPLPKLAHAF 115
           +E ++++F ++   +  Q  +L+GLP++NLE  +  + K +G    +   I L KL  A 
Sbjct: 63  NEVIQVNFAIESTNKPFQNTLLIGLPNKNLEMAFEPEIKDNGKLSMYKYRIDLAKLDAAL 122

Query: 116 NDRAE-----LQVNLLVSTE----ENSLVKELFILSIVDPVTNTRDTARNFVRLNPKEEI 166
              A      ++  L++++     + +L +E+  L++   V ++  +  +   + P  EI
Sbjct: 123 LQEASRSPEPIKATLILASSTAKPKENLFREILQLNLNFDVDHSDSSLVDKFGIKP--EI 180

Query: 167 HHIFQSSPKTVNAFIAQLFALVITTTLFVLFVSWVSFGAVNFN-----LKNVSSYLFVAL 221
           HHIF + PK V   IA +F L+I  T+  L V+W++  A  FN     +  V    F+A 
Sbjct: 181 HHIFHAEPKRVAKPIAVIFVLIIFITILSLIVTWLNSCAAAFNNIPTGVTAVYFLGFIAT 240

Query: 222 VSGFEFIFYKYYSGTSIFDTV 242
           + GFE IF +YY GTSIF+T+
Sbjct: 241 IVGFEVIFARYYLGTSIFETL 261


  Database: KOG eukaryal database 04/03
    Posted date:  Apr 14, 2003  1:07 PM
  Number of letters in database: 30,389,216
  Number of sequences in database:  60,738
  
Lambda     K      H
   0.320    0.135    0.367 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,878,729
Number of Sequences: 60738
Number of extensions: 507262
Number of successful extensions: 1329
Number of sequences better than 1.0e-05: 1
Number of HSP's better than  0.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1327
Number of HSP's gapped (non-prelim): 1
length of query: 265
length of database: 30,389,216
effective HSP length: 104
effective length of query: 161
effective length of database: 24,072,464
effective search space: 3875666704
effective search space used: 3875666704
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)