ORF      STATUS       Function Best COG  Functional category                                          Pathways and functional systems
r_klactVI1963   good          R     KOG4488  General function prediction only                               Small EDRK-rich protein H4F5

BLASTP 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= r_klactVI1963 699380 699180 -67  
         (67 letters)

Database: KOG eukaryal database 04/03 
           60,738 sequences; 30,389,216 total letters

Searching..................................................done

Color Key for Alignment Scores:   


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

YDL085c-a [R] KOG4488 Small EDRK-rich protein H4F5                     84   5e-17
SPAC1705.02 [R] KOG4488 Small EDRK-rich protein H4F5                   54   3e-08
HsM5032085 [R] KOG4488 Small EDRK-rich protein H4F5                    50   4e-07

>YDL085c-a [R] KOG4488 Small EDRK-rich protein H4F5
          Length = 68

 Score = 83.6 bits (205), Expect = 5e-17
 Identities = 40/46 (86%), Positives = 43/46 (92%)

Query: 1  MARGNQRELARQKNLKKQQESGKNQKKQGDPKKRMESDAEILRQKQ 46
          MARGNQR+LARQKNLKKQ++  KNQKK GDPKKRMESDAEILRQKQ
Sbjct: 1  MARGNQRDLARQKNLKKQKDMAKNQKKSGDPKKRMESDAEILRQKQ 46


>SPAC1705.02 [R] KOG4488 Small EDRK-rich protein H4F5
          Length = 63

 Score = 54.3 bits (129), Expect = 3e-08
 Identities = 27/47 (57%), Positives = 36/47 (76%), Gaps = 2/47 (4%)

Query: 1  MARGNQRELARQKNLKKQQESGKNQKKQGDPKKRMESDAEILRQKQQ 47
          M+RGNQR++ R +NLKK Q S K  K+ GDP KR+E+ AEI+R KQ+
Sbjct: 1  MSRGNQRDVDRARNLKKSQASKK--KQAGDPTKRLEAQAEIMRAKQR 45


>HsM5032085 [R] KOG4488 Small EDRK-rich protein H4F5
          Length = 59

 Score = 50.4 bits (119), Expect = 4e-07
 Identities = 25/49 (51%), Positives = 35/49 (71%), Gaps = 2/49 (4%)

Query: 1  MARGNQRELARQKNLKKQQESGKNQKKQG--DPKKRMESDAEILRQKQQ 47
          M RGNQRELARQKN+KKQ +S K +++        R + D+EI++QKQ+
Sbjct: 1  MTRGNQRELARQKNMKKQSDSVKGKRRDDGLSAAARKQRDSEIMQQKQK 49


  Database: KOG eukaryal database 04/03
    Posted date:  Apr 14, 2003  1:07 PM
  Number of letters in database: 30,389,216
  Number of sequences in database:  60,738
  
Lambda     K      H
   0.303    0.120    0.301 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,866,810
Number of Sequences: 60738
Number of extensions: 87643
Number of successful extensions: 1011
Number of sequences better than 1.0e-05: 3
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1008
Number of HSP's gapped (non-prelim): 3
length of query: 67
length of database: 30,389,216
effective HSP length: 43
effective length of query: 24
effective length of database: 27,777,482
effective search space: 666659568
effective search space used: 666659568
T: 11
A: 40
X1: 17 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)