ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactVI2075 good J KOG3449 Translation, ribosomal structure and biogenesis 60S acidic ribosomal protein P2
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactVI2075 741097 741414 106
(106 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YOL039w [J] KOG3449 60S acidic ribosomal protein P2 72 2e-13
SPAC1071.08 [J] KOG3449 60S acidic ribosomal protein P2 54 4e-08
SPBC23G7.15c [J] KOG3449 60S acidic ribosomal protein P2 53 6e-08
SPBP8B7.06 [J] KOG3449 60S acidic ribosomal protein P2 52 1e-07
Hs4506671 [J] KOG3449 60S acidic ribosomal protein P2 51 2e-07
YDR382w [J] KOG3449 60S acidic ribosomal protein P2 51 3e-07
At3g44590 [J] KOG3449 60S acidic ribosomal protein P2 48 2e-06
CE22694 [J] KOG3449 60S acidic ribosomal protein P2 47 4e-06
>YOL039w [J] KOG3449 60S acidic ribosomal protein P2
Length = 106
Score = 71.6 bits (174), Expect = 2e-13
Identities = 39/106 (36%), Positives = 44/106 (40%)
Query: 1 MKXXXXXXXXXXXGNTPSSDNVKAVLESVGIXXXXXXXXXXXXXXXGKSVEELIAEGTEK 60
MK GNTP + +KA+LESVGI GKSV+ELI EG EK
Sbjct: 1 MKYLAAYLLLNAAGNTPDATKIKAILESVGIEIEDEKVSSVLSALEGKSVDELITEGNEK 60
Query: 61 LASVPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDDMGFGLFD 106
LA+VP DDDMGFGLFD
Sbjct: 61 LAAVPAAGPASAGGAAAASGDAAAEEEKEEEAAEESDDDMGFGLFD 106
>SPAC1071.08 [J] KOG3449 60S acidic ribosomal protein P2
Length = 110
Score = 53.9 bits (128), Expect = 4e-08
Identities = 30/95 (31%), Positives = 41/95 (42%), Gaps = 3/95 (3%)
Query: 15 NTPSSDNVKAVLESVGIXXXXXXXXXXXXXXXGKSVEELIAEGTEKLASVPXXXXXXXXX 74
N+PS+ ++++VL +VGI GK ++ELIA G EKLA+VP
Sbjct: 16 NSPSASDIESVLSTVGIESESERVEALIKELDGKDIDELIAAGNEKLATVPSGGAAAAAA 75
Query: 75 XXXXXXXXXXXXXXX---XXXXXXXDDDMGFGLFD 106
D+DMGFGLFD
Sbjct: 76 PAAAGGAAPAAEEAAKEEAKEEEESDEDMGFGLFD 110
>SPBC23G7.15c [J] KOG3449 60S acidic ribosomal protein P2
Length = 110
Score = 53.1 bits (126), Expect = 6e-08
Identities = 29/94 (30%), Positives = 41/94 (42%), Gaps = 3/94 (3%)
Query: 16 TPSSDNVKAVLESVGIXXXXXXXXXXXXXXXGKSVEELIAEGTEKLASVPXXXXXXXXXX 75
+PS+ ++++VL +VGI GK++EELIA G EKL++VP
Sbjct: 17 SPSASDIESVLSTVGIEAEAERVESLISELNGKNIEELIAAGNEKLSTVPSAGAVATPAA 76
Query: 76 XXXXXXXXXXXXXXX---XXXXXXDDDMGFGLFD 106
D+DMGFGLFD
Sbjct: 77 GGAAGAEATSAAEEAKEEEAAEESDEDMGFGLFD 110
>SPBP8B7.06 [J] KOG3449 60S acidic ribosomal protein P2
Length = 110
Score = 52.0 bits (123), Expect = 1e-07
Identities = 29/95 (30%), Positives = 41/95 (42%), Gaps = 3/95 (3%)
Query: 15 NTPSSDNVKAVLESVGIXXXXXXXXXXXXXXXGKSVEELIAEGTEKLASVPXXXXXXXXX 74
++PS+ ++++VL +VGI GK ++ELIA G EKLA+VP
Sbjct: 16 DSPSASDIESVLSTVGIEAESERIETLINELNGKDIDELIAAGNEKLATVPTGGAASAAP 75
Query: 75 XXXXXXXXXXXXXXX---XXXXXXXDDDMGFGLFD 106
D+DMGFGLFD
Sbjct: 76 AAAAGGAAPAAEEAAKEEAKEEEESDEDMGFGLFD 110
>Hs4506671 [J] KOG3449 60S acidic ribosomal protein P2
Length = 115
Score = 51.2 bits (121), Expect = 2e-07
Identities = 30/100 (30%), Positives = 42/100 (42%), Gaps = 8/100 (8%)
Query: 15 NTPSSDNVKAVLESVGIXXXXXXXXXXXXXXXGKSVEELIAEGTEKLASVPXXXXXXXXX 74
++PS+ ++K +L+SVGI GK++E++IA+G KLASVP
Sbjct: 16 SSPSAKDIKKILDSVGIEADDDRLNKVISELNGKNIEDVIAQGIGKLASVPAGGAVAVSA 75
Query: 75 XXXXXXXXXXXXXXXX--------XXXXXXDDDMGFGLFD 106
DDDMGFGLFD
Sbjct: 76 APGSAAPAAGSAPAAAEEKKDEKKEESEESDDDMGFGLFD 115
>YDR382w [J] KOG3449 60S acidic ribosomal protein P2
Length = 110
Score = 50.8 bits (120), Expect = 3e-07
Identities = 36/110 (32%), Positives = 44/110 (39%), Gaps = 4/110 (3%)
Query: 1 MKXXXXXXXXXXXGNT-PSSDNVKAVLESVGIXXXXXXXXXXXXXXXGK-SVEELIAEGT 58
MK GN PS+ ++KAV+ESVG GK S+EE+IAEG
Sbjct: 1 MKYLAAYLLLVQGGNAAPSAADIKAVVESVGAEVDEARINELLSSLEGKGSLEEIIAEGQ 60
Query: 59 EKLASVPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--XDDDMGFGLFD 106
+K A+VP DDDMGFGLFD
Sbjct: 61 KKFATVPTGGASSAAAGAAGAAAGGDAAEEEKEEEAKEESDDDMGFGLFD 110
>At3g44590 [J] KOG3449 60S acidic ribosomal protein P2
Length = 111
Score = 48.1 bits (113), Expect = 2e-06
Identities = 33/111 (29%), Positives = 40/111 (35%), Gaps = 5/111 (4%)
Query: 1 MKXXXXXXXXXXXGNT-PSSDNVKAVLESVGIXXXXXXXXXXXXXXXGKSVEELIAEGTE 59
MK GN PS+DN+K ++ +VG GK + ELIA G E
Sbjct: 1 MKVAAAFLLAVLGGNANPSADNIKDIIGAVGADVDGESIELLLKEVSGKDIAELIASGRE 60
Query: 60 KLASVPX----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDDMGFGLFD 106
KLASVP DDDMGF LF+
Sbjct: 61 KLASVPSGGGVAVSAAPSSGGGGAAAPAEKKEAKKEEKEESDDDMGFSLFE 111
>CE22694 [J] KOG3449 60S acidic ribosomal protein P2
Length = 110
Score = 47.0 bits (110), Expect = 4e-06
Identities = 29/93 (31%), Positives = 36/93 (38%), Gaps = 3/93 (3%)
Query: 17 PSSDNVKAVLESVGIXXXXXXXXXXXXXXXGKSVEELIAEGTEKLASVPXXXXXXXXXXX 76
P D++K +L +VG+ GK+VEELIAEG+ L SV
Sbjct: 18 PKVDDLKNILSAVGVDADAETAKLVVSRLAGKTVEELIAEGSAGLVSVSGGAAPAAAAAP 77
Query: 77 XXXXXXXXXXXXXXXX---XXXXDDDMGFGLFD 106
DDDMGFGLFD
Sbjct: 78 AAGGAAPAADSKPAKKEEPKEESDDDMGFGLFD 110
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.307 0.132 0.353
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,672,493
Number of Sequences: 60738
Number of extensions: 35711
Number of successful extensions: 66
Number of sequences better than 1.0e-05: 8
Number of HSP's better than 0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 56
Number of HSP's gapped (non-prelim): 8
length of query: 106
length of database: 30,389,216
effective HSP length: 82
effective length of query: 24
effective length of database: 25,408,700
effective search space: 609808800
effective search space used: 609808800
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (22.0 bits)