ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactVI2127 good A KOG1040 RNA processing and modification Polyadenylation factor I complex, subunit, Yth1 (CPSF subunit)
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactVI2127 761965 762594 210
(210 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YPR107c [A] KOG1040 Polyadenylation factor I complex subunit Yth... 367 e-102
Hs5729939 [A] KOG1040 Polyadenylation factor I complex subunit Y... 161 5e-40
SPAC227.08c [A] KOG1040 Polyadenylation factor I complex subunit... 161 7e-40
CE23642_1 [A] KOG1040 Polyadenylation factor I complex subunit Y... 159 3e-39
ECU01g0430 [A] KOG1040 Polyadenylation factor I complex subunit ... 157 1e-38
7296160 [A] KOG1040 Polyadenylation factor I complex subunit Yth... 153 2e-37
At1g30460_1 [A] KOG1040 Polyadenylation factor I complex subunit... 88 1e-17
SPBC337.12 [R] KOG1492 C3H1-type Zn-finger protein 70 2e-12
Hs22041107 [A] KOG1040 Polyadenylation factor I complex subunit ... 55 5e-08
Hs22050713 [A] KOG1040 Polyadenylation factor I complex subunit ... 54 2e-07
Hs14210506 [A] KOG1040 Polyadenylation factor I complex subunit ... 53 3e-07
7295084 [R] KOG1492 C3H1-type Zn-finger protein 52 8e-07
At1g21570 [R] KOG1492 C3H1-type Zn-finger protein 51 1e-06
>YPR107c [A] KOG1040 Polyadenylation factor I complex subunit Yth1 (CPSF
subunit)
Length = 208
Score = 367 bits (941), Expect = e-102
Identities = 157/208 (75%), Positives = 184/208 (87%), Gaps = 1/208 (0%)
Query: 1 MSIVHPDTSKYEFNFEPFLRKEYSFSLDPDRPVCQYYNSREGIKSCPNGARCPNKHVLPI 60
MS++HPDT+KY F FEPFLR+EYSFSLDPDRP+C++YNSREG KSCP G CP KHVLPI
Sbjct: 1 MSLIHPDTAKYPFKFEPFLRQEYSFSLDPDRPICEFYNSREGPKSCPRGPLCPKKHVLPI 60
Query: 61 FQNKIVCKHWLRGLCKKNDQCEYLHEYNLRKMPECVFFTKNGYCTQSPECQYLHVDHKSQ 120
FQNKIVC+HWLRGLCKKNDQCEYLHEYNLRKMPECVFF+KNGYCTQSP+CQYLH+D S+
Sbjct: 61 FQNKIVCRHWLRGLCKKNDQCEYLHEYNLRKMPECVFFSKNGYCTQSPDCQYLHIDPASK 120
Query: 121 LEECEDYNMGFCPSGPACTKKHVKKVLCPRYLVGFCPLGKD-CDWSHPKFKVPSEHSKLR 179
+ +CE+Y MGFCP G +C ++H+KKV C RY+ GFCPLGKD CD HP+F +P E SKLR
Sbjct: 121 IPKCENYEMGFCPLGSSCPRRHIKKVFCQRYMTGFCPLGKDECDMEHPQFIIPDEGSKLR 180
Query: 180 IKKDEHINTRKMDEERERRLNAIINGDI 207
IK+D+ INTRKMDEE+ERRLNAIING++
Sbjct: 181 IKRDDEINTRKMDEEKERRLNAIINGEV 208
>Hs5729939 [A] KOG1040 Polyadenylation factor I complex subunit Yth1 (CPSF
subunit)
Length = 269
Score = 161 bits (408), Expect = 5e-40
Identities = 66/140 (47%), Positives = 96/140 (68%), Gaps = 7/140 (5%)
Query: 33 VCQYYNSREGIKSCPNGARCPNKHVLPIFQNKIVCKHWLRGLCKKNDQCEYLHEYNLRKM 92
VC+++ +C G CP +H+ + +VCKHWLRGLCKK DQCE+LHEY++ KM
Sbjct: 40 VCEFFLKA----ACGKGGMCPFRHISG--EKTVVCKHWLRGLCKKGDQCEFLHEYDMTKM 93
Query: 93 PECVFFTKNGYCTQSPECQYLHVDHKSQLEECEDYNMGFCPSGPACTKKHVKKVLCPRYL 152
PEC F++K G C+ EC +LH+D +S++++C Y+ GFC GP C +H ++V+C YL
Sbjct: 94 PECYFYSKFGECSNK-ECPFLHIDPESKIKDCPWYDRGFCKHGPLCRHRHTRRVICVNYL 152
Query: 153 VGFCPLGKDCDWSHPKFKVP 172
VGFCP G C + HP+F++P
Sbjct: 153 VGFCPEGPSCKFMHPRFELP 172
>SPAC227.08c [A] KOG1040 Polyadenylation factor I complex subunit Yth1 (CPSF
subunit)
Length = 170
Score = 161 bits (407), Expect = 7e-40
Identities = 74/167 (44%), Positives = 99/167 (58%), Gaps = 20/167 (11%)
Query: 7 DTSKYEFNFEPFLRKEYSFSLDPDRPVCQYYNSREGIKSCPNGARCPNKHVLPIFQNKIV 66
D S +F F+ +L++ ++F R + + NG +K +V
Sbjct: 13 DFSSVQFRFDNYLKQNFNFG-------------RSALLNSGNGRDSGSK------MGSVV 53
Query: 67 CKHWLRGLCKKNDQCEYLHEYNLRKMPECVFFTKNGYCTQSPECQYLHVDHKSQLEECED 126
CKHWLRGLCKK +QC++LHEYNL+KMP C F+ + G+C+ EC YLH+D Q+ C
Sbjct: 54 CKHWLRGLCKKGEQCDFLHEYNLKKMPPCHFYAERGWCSNGEECLYLHLDPSKQVGVCAW 113
Query: 127 YNMGFCPSGPACTKKHVKKVL-CPRYLVGFCPLGKDCDWSHPKFKVP 172
YNMGFCP GP C KHV+K CP+YL GFCPLG +C +HPK P
Sbjct: 114 YNMGFCPLGPICRGKHVRKPRPCPKYLAGFCPLGPNCPDAHPKHSEP 160
>CE23642_1 [A] KOG1040 Polyadenylation factor I complex subunit Yth1 (CPSF
subunit)
Length = 560
Score = 159 bits (402), Expect = 3e-39
Identities = 78/175 (44%), Positives = 106/175 (60%), Gaps = 11/175 (6%)
Query: 2 SIVHPDTSKYEFNFEPFLRKEYSFSLDPDRP---VCQYYNSREGIKSCPNGARCPNKHVL 58
+I P T E F KE F D DR VC+ + +K CP G CP +H+
Sbjct: 21 NITAPMTDVEEALFNQRGMKEAPFR-DLDRSGKAVCR----KNKLKMCPFGPTCPLRHID 75
Query: 59 PIFQNKIVCKHWLRGLCKKNDQCEYLHEYNLRKMPECVFFTKNGYCTQSPECQYLHVDHK 118
+ +VCKHWLRGLCKK DQCE+LHEY+L KMPEC FF+K C+ EC + H+D +
Sbjct: 76 G--EKAVVCKHWLRGLCKKGDQCEFLHEYDLTKMPECFFFSKYSACSNR-ECPFRHIDPE 132
Query: 119 SQLEECEDYNMGFCPSGPACTKKHVKKVLCPRYLVGFCPLGKDCDWSHPKFKVPS 173
+++++C Y+ GFC GP C +H ++ +CP YL GFC G DC ++HP F +PS
Sbjct: 133 TKMKDCPWYDRGFCRHGPYCKHRHRRRAVCPNYLAGFCLQGPDCQYAHPSFGLPS 187
>ECU01g0430 [A] KOG1040 Polyadenylation factor I complex subunit Yth1 (CPSF
subunit)
Length = 176
Score = 157 bits (397), Expect = 1e-38
Identities = 72/159 (45%), Positives = 98/159 (61%), Gaps = 9/159 (5%)
Query: 13 FNFEPFLRKEYSFSLDPDRPVCQYYNSREGIKSCPNGARCPNKHVLPIFQNKIVCKHWLR 72
F+FE ++ + + D C Y + SC + CP +HV +VCKHWLR
Sbjct: 6 FSFEAYVSDKLGLH-EEDEVYCIPYQTN----SCRD-PNCPKQHVK--LSTAVVCKHWLR 57
Query: 73 GLCKKNDQCEYLHEYNLRKMPECVFFTKNGYCTQSPECQYLHVDHKSQLEECEDYNMGFC 132
GLCKK +CE++HEY+L +MPEC FF+ G C +PEC Y+H+D S +EC YN GFC
Sbjct: 58 GLCKKGIKCEFMHEYDLSRMPECYFFSSYGEC-MNPECNYIHIDPNSSSKECPWYNRGFC 116
Query: 133 PSGPACTKKHVKKVLCPRYLVGFCPLGKDCDWSHPKFKV 171
+G +C KHV+K LC Y +GFCP G +CD+ HPKF +
Sbjct: 117 RNGASCKNKHVRKKLCYNYFLGFCPKGLNCDYGHPKFNI 155
>7296160 [A] KOG1040 Polyadenylation factor I complex subunit Yth1 (CPSF
subunit)
Length = 296
Score = 153 bits (386), Expect = 2e-37
Identities = 67/140 (47%), Positives = 93/140 (65%), Gaps = 5/140 (3%)
Query: 33 VCQYYNSREGIKSCPNGARCPNKHVLPIFQNKIVCKHWLRGLCKKNDQCEYLHEYNLRKM 92
VC + +R G + C G+ CP +H+ IVCKHWLRGLCKK DQCE+LHEY++ KM
Sbjct: 40 VCNFI-TRNG-QECDKGSACPFRHIRG--DRTIVCKHWLRGLCKKGDQCEFLHEYDMTKM 95
Query: 93 PECVFFTKNGYCTQSPECQYLHVDHKSQLEECEDYNMGFCPSGPACTKKHVKKVLCPRYL 152
PEC F+++ C + EC +LH+D +S++++C Y GFC GP C +H+++VLC YL
Sbjct: 96 PECYFYSRFNAC-HNKECPFLHIDPQSKVKDCPWYKRGFCRHGPHCRHQHLRRVLCMDYL 154
Query: 153 VGFCPLGKDCDWSHPKFKVP 172
GFCP G C HP F++P
Sbjct: 155 AGFCPEGPSCKHMHPHFELP 174
>At1g30460_1 [A] KOG1040 Polyadenylation factor I complex subunit Yth1 (CPSF
subunit)
Length = 281
Score = 87.8 bits (216), Expect = 1e-17
Identities = 36/79 (45%), Positives = 50/79 (62%), Gaps = 3/79 (3%)
Query: 66 VCKHWLRGLCKKNDQCEYLHEYNLRKMPECVFFTKNGYCTQSPECQYLHVDHKSQLEECE 125
VC+HWLRGLC K D C +LH+++ +MP C FF G C + +C Y H + ++EC
Sbjct: 65 VCRHWLRGLCMKGDACGFLHQFDKARMPICRFFRLYGECREQ-DCVYKHTN--EDIKECN 121
Query: 126 DYNMGFCPSGPACTKKHVK 144
Y +GFCP+GP C +H K
Sbjct: 122 MYKLGFCPNGPDCRYRHAK 140
>SPBC337.12 [R] KOG1492 C3H1-type Zn-finger protein
Length = 377
Score = 70.1 bits (170), Expect = 2e-12
Identities = 46/150 (30%), Positives = 72/150 (47%), Gaps = 16/150 (10%)
Query: 13 FNFEPFLRKEYSFSLD----PDRPVCQYYNSREGIKSCPNGARCPNKHVLPIFQNKIVCK 68
+N + +L K+ F + P C+YYN+ GI C GA C H K +C
Sbjct: 184 WNNKSYLLKKKRFLKEVGNSPSAVYCRYYNAN-GI--CGKGAACRFVHEPT---RKTICP 237
Query: 69 HWLRGLCKKNDQCEYLHEYNLRKMPECVFFTKNGYCTQSPECQYLHVDHKSQLEECEDY- 127
+L G C K + C HE + R++P C +F G C +P C+Y+H+ + C ++
Sbjct: 238 KFLNGRCNKAEDCNLSHELDPRRIPACRYFLL-GKC-NNPNCRYVHIHYSENAPICFEFA 295
Query: 128 NMGFCPSGPACTKKHVKKVLCPRY-LVGFC 156
GFC G +C +H+ + C Y + G C
Sbjct: 296 KYGFCELGTSCKNQHI--LQCTDYAMFGSC 323
>Hs22041107 [A] KOG1040 Polyadenylation factor I complex subunit Yth1 (CPSF
subunit)
Length = 1048
Score = 55.5 bits (132), Expect = 5e-08
Identities = 43/155 (27%), Positives = 70/155 (44%), Gaps = 30/155 (19%)
Query: 54 NKHVLPIFQNKIVCKHWLRGLCKKNDQCEYLHEYNLRKMPECVFFTKNGYCTQSPECQYL 113
N+H + + K +CK++L G C K DQC++ H+ L K E F GYCT+ C Y+
Sbjct: 68 NQHTVE-HKGKQICKYFLEGRCIKGDQCKFDHDAELEKRKEICKFYLQGYCTKGENCIYM 126
Query: 114 HVDHKSQLEECEDYNMGFCPSGPACTKKHVKKVLCPRYLVGFCPLGKDCDWSHPKFKVPS 173
H + L+ C + F SG C + G +C +SH +
Sbjct: 127 H--NILYLKSC-GCSFKFYHSGAKCYQ------------------GDNCKFSHD--DLTK 163
Query: 174 EHSKLR---IKKDEHI---NTRKMDEERERRLNAI 202
E KL + DE + + R+++E R+R + +
Sbjct: 164 ETKKLLDKVLNTDEELINEDERELEELRKRGITPL 198
Score = 49.7 bits (117), Expect = 3e-06
Identities = 27/98 (27%), Positives = 45/98 (45%), Gaps = 6/98 (6%)
Query: 31 RPVCQYYNSREGIKSCPNGARCPNKHVLPIFQNKIVCKHWLRGLCKKNDQCEYLHEYNLR 90
+ +C+Y+ EG C G +C H + + K +CK +L+G C K + C Y+H
Sbjct: 77 KQICKYF--LEG--RCIKGDQCKFDHDAELEKRKEICKFYLQGYCTKGENCIYMHNILYL 132
Query: 91 KMPEC--VFFTKNGYCTQSPECQYLHVDHKSQLEECED 126
K C F+ C Q C++ H D + ++ D
Sbjct: 133 KSCGCSFKFYHSGAKCYQGDNCKFSHDDLTKETKKLLD 170
>Hs22050713 [A] KOG1040 Polyadenylation factor I complex subunit Yth1 (CPSF
subunit)
Length = 1303
Score = 53.9 bits (128), Expect = 2e-07
Identities = 24/81 (29%), Positives = 39/81 (47%), Gaps = 4/81 (4%)
Query: 62 QNKIVCKHWLRGLCKKNDQCEYLHEYNLRKMPECVFFTKNGYCTQSPECQYLHVDHKSQL 121
+ K++CK+++ G C D C + H+ L K E F G+C ++ C Y+H D +L
Sbjct: 391 KGKVICKYFVEGRCTWGDHCNFSHDIELPKKRELCKFYITGFCARAENCPYMHGDFPCKL 450
Query: 122 EECEDYNMGFCPSGPACTKKH 142
+ G C +G C H
Sbjct: 451 Y----HTTGNCINGDDCMFSH 467
>Hs14210506 [A] KOG1040 Polyadenylation factor I complex subunit Yth1 (CPSF
subunit)
Length = 291
Score = 53.1 bits (126), Expect = 3e-07
Identities = 26/82 (31%), Positives = 41/82 (49%), Gaps = 6/82 (7%)
Query: 62 QNKIVCKHWLRGLCKKNDQCEYLHEYNLRKMPECVFFTKNGYCTQSPECQYLHVDHKSQL 121
+ K +CK++L C K DQC++ H+ + K E F G+C++ C YLH ++
Sbjct: 192 KGKQICKYFLERKCIKGDQCKFDHDAEIEKKKEMCKFYVQGFCSRGENCLYLHNEY---- 247
Query: 122 EECEDYNMGF-CPSGPACTKKH 142
C+ Y+ G C G C H
Sbjct: 248 -PCKFYHTGTKCYQGEYCQFSH 268
Score = 51.2 bits (121), Expect = 1e-06
Identities = 28/94 (29%), Positives = 45/94 (47%), Gaps = 11/94 (11%)
Query: 31 RPVCQYYNSREGIKSCPNGARCPNKHVLPIFQNKIVCKHWLRGLCKKNDQCEYLH-EYNL 89
+ +C+Y+ R+ IK G +C H I + K +CK +++G C + + C YLH EY
Sbjct: 194 KQICKYFLERKCIK----GDQCKFDHDAEIEKKKEMCKFYVQGFCSRGENCLYLHNEY-- 247
Query: 90 RKMPECVFFTKNGYCTQSPECQYLHVDHKSQLEE 123
C F+ C Q CQ+ H + +E
Sbjct: 248 ----PCKFYHTGTKCYQGEYCQFSHAPLTPETQE 277
>7295084 [R] KOG1492 C3H1-type Zn-finger protein
Length = 568
Score = 51.6 bits (122), Expect = 8e-07
Identities = 27/76 (35%), Positives = 39/76 (50%), Gaps = 3/76 (3%)
Query: 66 VCKHWLRGLCKKNDQCEYLHEYNLRKMPECVFFTKNGYCTQSPECQYLHVDHKSQLEECE 125
+C +LRG C K +C H L KMP C ++ + G C + +C YLH S+ E C
Sbjct: 385 ICVSFLRGECTK-PKCLLSHNVTLEKMPVCRYYLR-GVCVRE-DCPYLHKKLSSKTEICI 441
Query: 126 DYNMGFCPSGPACTKK 141
D+ G+CP +K
Sbjct: 442 DFVRGYCPLAAELERK 457
>At1g21570 [R] KOG1492 C3H1-type Zn-finger protein
Length = 658
Score = 50.8 bits (120), Expect = 1e-06
Identities = 39/146 (26%), Positives = 67/146 (45%), Gaps = 11/146 (7%)
Query: 58 LPIFQNKIVCKHWLR-GLCKKND-QCEYLHEYNLRKMPECVFFTKNGYCTQSPECQYLHV 115
L + + K C+ + R G C K+D +C Y+H+ + K+ C F NG C + C+ H
Sbjct: 258 LRLAKKKKYCQFFTRFGKCNKDDGKCPYVHDPS--KIAVCTKFL-NGLCANA-NCKLTHK 313
Query: 116 DHKSQLEECEDYNMGFCPSGPACTKKHVK----KVLCPRYLVGFCPLGKDCDWSHPKFKV 171
++ +C Y G C + AC +HV +C +L G+C G + ++ P F+
Sbjct: 314 VIPERMPDCSYYLQGLC-NNEACPYRHVHVNPIAPICDGFLKGYCSEGDEHSYNCPVFEA 372
Query: 172 PSEHSKLRIKKDEHINTRKMDEERER 197
S+ K H + +R+R
Sbjct: 373 TGSCSQGLKCKLHHPKNQSKGRKRKR 398
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.322 0.140 0.465
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,683,914
Number of Sequences: 60738
Number of extensions: 768262
Number of successful extensions: 2159
Number of sequences better than 1.0e-05: 13
Number of HSP's better than 0.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 2066
Number of HSP's gapped (non-prelim): 28
length of query: 210
length of database: 30,389,216
effective HSP length: 102
effective length of query: 108
effective length of database: 24,193,940
effective search space: 2612945520
effective search space used: 2612945520
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)