ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactVI2175 good J KOG3445 Translation, ribosomal structure and biogenesis Mitochondrial/chloroplast ribosomal protein 36a
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactVI2175 777572 777147 -142
(142 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YPR100w [J] KOG3445 Mitochondrial/chloroplast ribosomal protein 36a 210 4e-55
SPBC19C2.12 [J] KOG3445 Mitochondrial/chloroplast ribosomal prot... 108 2e-24
At3g59650 [J] KOG3445 Mitochondrial/chloroplast ribosomal protei... 66 2e-11
7291624 [J] KOG3445 Mitochondrial/chloroplast ribosomal protein 36a 64 6e-11
CE08379 [J] KOG3445 Mitochondrial/chloroplast ribosomal protein 36a 59 2e-09
>YPR100w [J] KOG3445 Mitochondrial/chloroplast ribosomal protein 36a
Length = 140
Score = 210 bits (535), Expect = 4e-55
Identities = 94/142 (66%), Positives = 120/142 (84%), Gaps = 2/142 (1%)
Query: 1 MVVKVLRQTSIARNGVGAFVLPCKKITLQYCNWGGSSQGLRDFLTSNRMIQWAEKYPTIQ 60
MVVK + + SI RNGVGAFV PC+KITLQ+CNWGGSS+G+R FLTS R+ +W +++P IQ
Sbjct: 1 MVVKAIARNSIGRNGVGAFVFPCRKITLQFCNWGGSSEGMRKFLTSKRLDKWGQEFPWIQ 60
Query: 61 FEIVRKSGHPVIKGDYVNGRNKAICVKNLNIDNVENKLKLIRDASGEQLRHRTKNDNVDT 120
FE++RKSGHP+++ +Y NGR K ICV+NLNIDNVENKLKL++D+ G+ LR RTKNDNV++
Sbjct: 61 FEVMRKSGHPLLRAEYTNGREKVICVRNLNIDNVENKLKLLKDSDGDILRRRTKNDNVES 120
Query: 121 LNDSVRGIWSPLHLSPAIRHKV 142
LN SVRGIWSPLH A RH++
Sbjct: 121 LNSSVRGIWSPLH--AAKRHRI 140
>SPBC19C2.12 [J] KOG3445 Mitochondrial/chloroplast ribosomal protein 36a
Length = 145
Score = 108 bits (270), Expect = 2e-24
Identities = 51/132 (38%), Positives = 85/132 (63%), Gaps = 4/132 (3%)
Query: 1 MVVKVLRQTSIARNGVGAFVLPCKKITLQYCNWGGSSQGLRDFLTSNRMIQWAEKYPTIQ 60
M+++++ + SI +NG+G+F PC++I YCNWGGSS+G+++FL S ++ A++ ++
Sbjct: 1 MMIEIIPKISIPKNGLGSFTRPCRRIEFSYCNWGGSSKGMKEFL-STKLESLAKESQDVE 59
Query: 61 FEIVRKSG-HPVIKGDYVNGRNKAICVKNLNIDNVENKLKLIRDASGEQLRHRTKNDNVD 119
F + + G HP+I+ Y GR K IC + ++ ++ K L RD+ G L+ R V+
Sbjct: 60 FHVTNRQGKHPLIRAYYNTGREKVICTRKMSASSIFQKAILCRDSDG--LKPRLIKYPVE 117
Query: 120 TLNDSVRGIWSP 131
+ N SVRGIWSP
Sbjct: 118 STNPSVRGIWSP 129
>At3g59650 [J] KOG3445 Mitochondrial/chloroplast ribosomal protein 36a
Length = 119
Score = 65.9 bits (159), Expect = 2e-11
Identities = 39/111 (35%), Positives = 65/111 (58%), Gaps = 10/111 (9%)
Query: 24 KKITLQYCNWGGSSQGLRDFLTSNRMIQWAEKYPTIQFEIV---RKSGHPVIKGDYVNGR 80
KK+ + YCNWGGSS+G+R F+ S + EK P Q E++ + HP +KG Y N
Sbjct: 10 KKLVVSYCNWGGSSRGIRAFMES-ELPALKEKNP--QLEVITELSRGQHPYLKGIYRNRN 66
Query: 81 NKAICVKNLNIDNVENKLKLIRDASGEQ-LRHRTKNDNVDTLNDSVRGIWS 130
+ +CVKN++ + V +R++ G + ++ RT++ T + SV+G W+
Sbjct: 67 ERVVCVKNMDPEEVLLNATRLRNSLGRKVVKLRTRH---VTKHPSVQGTWT 114
>7291624 [J] KOG3445 Mitochondrial/chloroplast ribosomal protein 36a
Length = 192
Score = 63.9 bits (154), Expect = 6e-11
Identities = 36/123 (29%), Positives = 69/123 (55%), Gaps = 3/123 (2%)
Query: 13 RNGVGAFVLPCKKITLQYCNWGGSSQGLRDFLTSNRMIQWAEKYPTIQFEI-VRKSGHPV 71
+NG+G +V ++ITL++C GSS+G+RDF+ N ++ +A++ P I + R+ PV
Sbjct: 18 QNGLGRYVCQLQRITLKFCKNNGSSRGMRDFI-ENHLLDFAKENPGIVVYVKPRRHRTPV 76
Query: 72 IKGDYVNGRNKAICVKNLNIDNVENKLKLIRDASGEQLRHRTKNDNVDTLNDSVRGIWSP 131
+ G+Y+NG + + +N + + + L++ +G R + T S++G W+P
Sbjct: 77 LVGEYLNGEREWMSCRNSTQEEISKWIDLLKTQNGSSSSLRLRK-MWHTEVPSIQGPWTP 135
Query: 132 LHL 134
L
Sbjct: 136 FLL 138
>CE08379 [J] KOG3445 Mitochondrial/chloroplast ribosomal protein 36a
Length = 189
Score = 59.3 bits (142), Expect = 2e-09
Identities = 38/127 (29%), Positives = 66/127 (51%), Gaps = 6/127 (4%)
Query: 12 ARNGVGAFVLPCKKITLQYCNWGGSSQGLRDFLTSNRMIQWAEKYPTIQF--EIVRKSGH 69
A NG+ + +IT+++C SS G+R+F+ N++++ K P++ + VR S +
Sbjct: 34 AYNGISRYTNQLHRITVRFCKQSESSVGVRNFI-ENQLVEIGRKNPSVVIYAQPVRNS-N 91
Query: 70 PVIKGDYVNGRNKAICVKNLNIDNVENKLKLIRDASGEQLRHRTKNDNVDTLNDSVRGIW 129
P I+ +Y NGR I KN+ D V + L+ SGE + + L S++G W
Sbjct: 92 PSIRAEYGNGRTLQINAKNMTQDEVSKDVHLLFSRSGEPVVKLESRQS--ALVPSIQGQW 149
Query: 130 SPLHLSP 136
+P+ P
Sbjct: 150 TPITWLP 156
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.320 0.137 0.415
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,540,442
Number of Sequences: 60738
Number of extensions: 338985
Number of successful extensions: 814
Number of sequences better than 1.0e-05: 5
Number of HSP's better than 0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 807
Number of HSP's gapped (non-prelim): 5
length of query: 142
length of database: 30,389,216
effective HSP length: 96
effective length of query: 46
effective length of database: 24,558,368
effective search space: 1129684928
effective search space used: 1129684928
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)