ORF      STATUS       Function Best COG  Functional category                                          Pathways and functional systems
r_klactVI2285   suspect: LH   C     KOG3057  Energy production and conversion                               Cytochrome c oxidase, subunit VIb/COX12

BLASTP 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= r_klactVI2285 817837 817544 -98  
         (98 letters)

Database: KOG eukaryal database 04/03 
           60,738 sequences; 30,389,216 total letters

Searching..................................................done

Color Key for Alignment Scores:   


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Hs17442500 [C] KOG3057 Cytochrome c oxidase subunit VIb/COX12          46   8e-06

>Hs17442500 [C] KOG3057 Cytochrome c oxidase subunit VIb/COX12
          Length = 125

 Score = 46.2 bits (108), Expect = 8e-06
 Identities = 26/74 (35%), Positives = 37/74 (49%), Gaps = 11/74 (14%)

Query: 16  APSRSSRKQCWESRDLFFGCLDKISVVNALDPKHQKAIKASCSAEEAKFEQDCATSWISY 75
           APS   R+ CW +RD ++ CLD+    N  D    K +++S       FE  C   WI Y
Sbjct: 49  APSMKERQVCWGARDEYWKCLDE----NLEDASQCKKLRSS-------FESSCPQQWIKY 97

Query: 76  FKEKRVVDFKREKF 89
           F ++R     +EKF
Sbjct: 98  FDKRRDYLKFKEKF 111


  Database: KOG eukaryal database 04/03
    Posted date:  Apr 14, 2003  1:07 PM
  Number of letters in database: 30,389,216
  Number of sequences in database:  60,738
  
Lambda     K      H
   0.317    0.129    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,193,026
Number of Sequences: 60738
Number of extensions: 213270
Number of successful extensions: 665
Number of sequences better than 1.0e-05: 1
Number of HSP's better than  0.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 664
Number of HSP's gapped (non-prelim): 1
length of query: 98
length of database: 30,389,216
effective HSP length: 74
effective length of query: 24
effective length of database: 25,894,604
effective search space: 621470496
effective search space used: 621470496
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)