ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactVI2337 suspect: LH A KOG3242 RNA processing and modification Oligoribonuclease (3'->5' exoribonuclease)
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactVI2337 835637 834720 -306
(306 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YLR059c [A] KOG3242 Oligoribonuclease (3'->5' exoribonuclease) 256 3e-68
SPBC1347.07 [A] KOG3242 Oligoribonuclease (3'->5' exoribonuclease) 178 8e-45
Hs7661646 [A] KOG3242 Oligoribonuclease (3'->5' exoribonuclease) 153 3e-37
7301049 [A] KOG3242 Oligoribonuclease (3'->5' exoribonuclease) 142 6e-34
At2g26970 [A] KOG3242 Oligoribonuclease (3'->5' exoribonuclease) 135 1e-31
CE05245 [A] KOG3242 Oligoribonuclease (3'->5' exoribonuclease) 121 1e-27
>YLR059c [A] KOG3242 Oligoribonuclease (3'->5' exoribonuclease)
Length = 269
Score = 256 bits (654), Expect = 3e-68
Identities = 128/192 (66%), Positives = 150/192 (77%), Gaps = 6/192 (3%)
Query: 61 LKQPIVWIDCEMTGLDHINDKIIEVCCIITDGQL---NVADEDG---YESVIHYDKSIMD 114
L +P+VWIDCEMTGLDH+ND+IIE+CCIITDG L AD G YESVIHY +M+
Sbjct: 51 LFKPLVWIDCEMTGLDHVNDRIIEICCIITDGHLAPVKAADGQGDSHYESVIHYGPEVMN 110
Query: 115 NMNEWCINQHGFSGLTQKVLDSVKTREQVEEELLNYIKKWIPDQRQGVLAGNSVHMDRLF 174
MNEWCI HG SGLT KVL S KT QVE+ELL YI+++IPD+ GVLAGNSVHMDRLF
Sbjct: 111 KMNEWCIEHHGNSGLTAKVLASEKTLAQVEDELLEYIQRYIPDKNVGVLAGNSVHMDRLF 170
Query: 175 MLNEFPKVIDHLFYRIIDVSSIMEVARRHNPQLASVTYKKKGAHTAKADILESIEQLKFY 234
M+ EFPKVIDHLFYRI+DVSSIMEVARRHNP L + KK+ AHTA +DI ESI QL++Y
Sbjct: 171 MVREFPKVIDHLFYRIVDVSSIMEVARRHNPALQARNPKKEAAHTAYSDIKESIAQLQWY 230
Query: 235 ENHYFKNDTETK 246
++Y K ET+
Sbjct: 231 MDNYLKPPQETE 242
>SPBC1347.07 [A] KOG3242 Oligoribonuclease (3'->5' exoribonuclease)
Length = 180
Score = 178 bits (452), Expect = 8e-45
Identities = 91/178 (51%), Positives = 125/178 (70%), Gaps = 3/178 (1%)
Query: 61 LKQPIVWIDCEMTGLDHINDKIIEVCCIITDGQLNVADEDGYESVIHYDKSIMDNMNEWC 120
LKQP+VWIDCEMTGL+ ++EV IITDG L +E +++VI D+ + MN+WC
Sbjct: 4 LKQPLVWIDCEMTGLEVGKHVLMEVAAIITDGNLRPVEEK-FDAVIKLDEKQLSEMNDWC 62
Query: 121 INQHGFSGLTQKVLDSVKTREQVEEELLNYIKKWIPDQRQGVLAGNSVHMDRLFMLNEFP 180
I QHG SGLT++ S T + VE +LL YIKK+IP +R+ ++AGNSVH D F+ E P
Sbjct: 63 IEQHGKSGLTERCRQSNLTVKDVENQLLAYIKKYIPKKREALIAGNSVHADVRFLSVEMP 122
Query: 181 KVIDHLFYRIIDVSSIMEVARRHNPQLASVTYKKKGAHTAKADILESIEQLKFYENHY 238
K+I+HL YRIIDVS+I E+A+R P + + Y KKG H A +DILESI +L+ Y +++
Sbjct: 123 KIIEHLHYRIIDVSTIKELAKRWCPDIPA--YDKKGDHRALSDILESIGELQHYRSYW 178
>Hs7661646 [A] KOG3242 Oligoribonuclease (3'->5' exoribonuclease)
Length = 237
Score = 153 bits (386), Expect = 3e-37
Identities = 84/197 (42%), Positives = 123/197 (61%), Gaps = 7/197 (3%)
Query: 54 AALIPG-ALKQPIVWIDCEMTGLDHINDKIIEVCCIITDGQLNVADEDGYESVIHYDKSI 112
AA+ G ++ Q +VW+D EMTGLD D+IIE+ C+ITD LN+ E G +I +
Sbjct: 31 AAMAAGESMAQRMVWVDLEMTGLDIEKDQIIEMACLITDSDLNILAE-GPNLIIKQPDEL 89
Query: 113 MDNMNEWCINQHGFSGLTQKVLDSVKTREQVEEELLNYIKKWIPDQRQGV--LAGNSVHM 170
+D+M++WC HG SGLT+ V +S T +Q E E L+++++ P G+ LAGNSVH
Sbjct: 90 LDSMSDWCKEHHGRSGLTKAVKESTITLQQAEYEFLSFVRQQTPP---GLCPLAGNSVHE 146
Query: 171 DRLFMLNEFPKVIDHLFYRIIDVSSIMEVARRHNPQLASVTYKKKGAHTAKADILESIEQ 230
D+ F+ P+ + HL YRIIDVS++ E+ RR P+ KK +H A DI ESI++
Sbjct: 147 DKKFLDKYMPQFMKHLHYRIIDVSTVKELCRRWYPEEYEFAPKKAASHRALDDISESIKE 206
Query: 231 LKFYENHYFKNDTETKE 247
L+FY N+ FK + K+
Sbjct: 207 LQFYRNNIFKKKIDEKK 223
>7301049 [A] KOG3242 Oligoribonuclease (3'->5' exoribonuclease)
Length = 211
Score = 142 bits (358), Expect = 6e-34
Identities = 80/180 (44%), Positives = 111/180 (61%), Gaps = 2/180 (1%)
Query: 61 LKQPIVWIDCEMTGLDHINDKIIEVCCIITDGQLNVADEDGYESVIHYDKSIMDNMNEWC 120
L IVW+D EMTGLD DKI+EV CIITD LNV E G I++ + + D+MNEWC
Sbjct: 34 LDTDIVWMDLEMTGLDIEKDKILEVACIITDQDLNVKSE-GPCFAINHPQEVYDSMNEWC 92
Query: 121 INQHGFSGLTQKVLDSVKTREQVEEELLNYIKKWIPDQRQGVLAGNSVHMDRLFMLNEFP 180
+ H SGL + S E+ +L+Y++K IP +R L GNSV+ DRLF++ P
Sbjct: 93 MKHHYNSGLIDRCKSSDVNLEEASNLVLSYLEKNIP-KRACPLGGNSVYTDRLFIMKFMP 151
Query: 181 KVIDHLFYRIIDVSSIMEVARRHNPQLASVTYKKKGAHTAKADILESIEQLKFYENHYFK 240
V +L YRI+DVS+I E+A+R +P + KK H + DI ESI++L +Y+ + FK
Sbjct: 152 LVDAYLHYRIVDVSTIKELAKRWHPAILDSAPKKSFTHRSLDDIRESIKELAYYKANLFK 211
>At2g26970 [A] KOG3242 Oligoribonuclease (3'->5' exoribonuclease)
Length = 227
Score = 135 bits (339), Expect = 1e-31
Identities = 75/186 (40%), Positives = 112/186 (59%), Gaps = 2/186 (1%)
Query: 55 ALIPGALKQPIVWIDCEMTGLDHINDKIIEVCCIITDGQLNVADEDGYESVIHYDKSIMD 114
+L G KQP+VWID EMTGL+ D+I+E+ CIIT+G L + E G + V+ K +D
Sbjct: 17 SLEDGDYKQPLVWIDLEMTGLNVEVDRILEIACIITNGDLTQSVE-GPDLVVRQTKDCLD 75
Query: 115 NMNEWCINQHGFSGLTQKVLDSVKTREQVEEELLNYIKKWIPDQRQGVLAGNSVHMDRLF 174
M++WC HG SGLT+KVL S T + E++++ ++KK + +LAGNSV++D LF
Sbjct: 76 KMDDWCQTHHGASGLTKKVLLSAITEREAEQKVIEFVKKHVGSGNP-LLAGNSVYVDFLF 134
Query: 175 MLNEFPKVIDHLFYRIIDVSSIMEVARRHNPQLASVTYKKKGAHTAKADILESIEQLKFY 234
+ P++ + ++DVSS+ + R P KK H A DI ESI++LK+Y
Sbjct: 135 LKKYMPELAALFPHILVDVSSVKALCARWFPIERRKAPAKKNNHRAMDDIRESIKELKYY 194
Query: 235 ENHYFK 240
+ FK
Sbjct: 195 KKTIFK 200
>CE05245 [A] KOG3242 Oligoribonuclease (3'->5' exoribonuclease)
Length = 193
Score = 121 bits (303), Expect = 1e-27
Identities = 71/184 (38%), Positives = 104/184 (55%), Gaps = 6/184 (3%)
Query: 61 LKQPIVWIDCEMTGLDHINDKIIEVCCIITDGQLNVADEDGYESVIHYDKSIMDNMNEWC 120
++Q I+WIDCEMTGLD + E+ I+TD +LN G + VIH K ++DNM EW
Sbjct: 11 IEQRIIWIDCEMTGLDVEKQTLCEIALIVTDSELNTI-ATGPDIVIHQPKEVLDNMEEWP 69
Query: 121 INQHGFSGLTQKVLDSVKTREQVEEELLNYIK-KWIPDQRQGVLAGNSVHMDRLFMLNEF 179
N +GL +K++ S + E E+++++K +P + +AGNS++MDRLF+
Sbjct: 70 RNTFHENGLMEKIIASKYSMADAENEVIDFLKLHALPG--KSPIAGNSIYMDRLFIKKYM 127
Query: 180 PKVIDHLFYRIIDVSSIMEVARRHNPQLASVTYKKKGAHTAKADILESIEQLKFYENHYF 239
PK+ YR IDVS+I + +R P KK+ H A DI+ESI +LK Y F
Sbjct: 128 PKLDKFAHYRCIDVSTIKGLVQRWYPDYKHP--KKQCTHRAFDDIMESIAELKNYRESIF 185
Query: 240 KNDT 243
T
Sbjct: 186 VKST 189
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.317 0.134 0.395
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,411,813
Number of Sequences: 60738
Number of extensions: 765991
Number of successful extensions: 2063
Number of sequences better than 1.0e-05: 6
Number of HSP's better than 0.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 2046
Number of HSP's gapped (non-prelim): 6
length of query: 306
length of database: 30,389,216
effective HSP length: 106
effective length of query: 200
effective length of database: 23,950,988
effective search space: 4790197600
effective search space used: 4790197600
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)