ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactVI2357 good C KOG3469 Energy production and conversion Cytochrome c oxidase, subunit VIa/COX13
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= r_klactVI2357 845084 844704 -127 
         (127 letters)

Database: KOG eukaryal database 04/03 
           60,738 sequences; 30,389,216 total letters

Searching..................................................done

Color Key for Alignment Scores:   


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

YGL191w [C] KOG3469 Cytochrome c oxidase subunit VIa/COX13            206   3e-54
SPCC1739.09c [C] KOG3469 Cytochrome c oxidase subunit VIa/COX13        86   1e-17
7291601 [C] KOG3469 Cytochrome c oxidase subunit VIa/COX13             54   3e-08
Hs17999528 [C] KOG3469 Cytochrome c oxidase subunit VIa/COX13          54   4e-08
CE01308 [C] KOG3469 Cytochrome c oxidase subunit VIa/COX13             52   2e-07
Hs4885149 [C] KOG3469 Cytochrome c oxidase subunit VIa/COX13           48   2e-06

>YGL191w [C] KOG3469 Cytochrome c oxidase subunit VIa/COX13
          Length = 129

 Score =  206 bits (525), Expect = 3e-54
 Identities = 93/128 (72%), Positives = 108/128 (83%), Gaps = 1/128 (0%)

Query: 1   MFKQAIRR-ASTLPKYALEPAFGKPDLAAAQAYKDYMKHSTEHAKQTSNLWVKISIFVAA 59
           MF+Q  +R AS+LP  AL+PAFG PD  AAQ +K+ +  + +HAK TSN+WVKIS++VA 
Sbjct: 1   MFRQCAKRYASSLPPNALKPAFGPPDKVAAQKFKESLMATEKHAKDTSNMWVKISVWVAL 60

Query: 60  PAIALTAVNTYFVEAEHAEHREHLKHVPDEEWPRDYEFQNLRQKPFFWGDGDKTLFWNPV 119
           PAIALTAVNTYFVE EHAEHREHLKHVPD EWPRDYEF N+R KPFFWGDGDKTLFWNPV
Sbjct: 61  PAIALTAVNTYFVEKEHAEHREHLKHVPDSEWPRDYEFMNIRSKPFFWGDGDKTLFWNPV 120

Query: 120 INRHVSHD 127
           +NRH+ HD
Sbjct: 121 VNRHIEHD 128


>SPCC1739.09c [C] KOG3469 Cytochrome c oxidase subunit VIa/COX13
          Length = 130

 Score = 85.5 bits (210), Expect = 1e-17
 Identities = 43/118 (36%), Positives = 69/118 (58%), Gaps = 6/118 (5%)

Query: 10  STLPKYALEPAFGKPDLAAAQAYKDYMKHSTEHAKQTSNLWVKISIFVAAPAIALTAVNT 69
           +++PK A   +F      A   + + ++   EHAK++S  W K++ ++  PA+ L + N 
Sbjct: 17  TSVPKRAGLLSFRAYSNEAKVNWLEEVQAEEEHAKRSSEFWKKVTYYIGGPALILASANA 76

Query: 70  YFVEAEHAEHREHLKHVPDEEWPRDYEFQNLRQKPFFWGDGDKTLFWNPVINRHVSHD 127
           Y++   + +H+EH KHV D +    Y F+NLR K + WGDG KTLFWN  +N H+  D
Sbjct: 77  YYI---YCKHQEHAKHVEDTD--PGYSFENLRFKKYPWGDGSKTLFWNDKVN-HLKKD 128


>7291601 [C] KOG3469 Cytochrome c oxidase subunit VIa/COX13
          Length = 109

 Score = 54.3 bits (129), Expect = 3e-08
 Identities = 28/77 (36%), Positives = 41/77 (52%), Gaps = 16/77 (20%)

Query: 49  LWVKISIFVAAPAIALTAVNTYFVEAEHAEHREHLKHVPDEEWPRD----YEFQNLRQKP 104
           +W ++S FVA PA+ L  +N Y            LKH  + + PR     Y++   R+K 
Sbjct: 37  VWKRLSFFVAVPAVGLCMLNAY------------LKHQEEHDKPRQEFVKYDYLRRREKR 84

Query: 105 FFWGDGDKTLFWNPVIN 121
           F WG+G K+LF NP +N
Sbjct: 85  FPWGEGQKSLFHNPHVN 101


>Hs17999528 [C] KOG3469 Cytochrome c oxidase subunit VIa/COX13
          Length = 109

 Score = 53.5 bits (127), Expect = 4e-08
 Identities = 27/76 (35%), Positives = 44/76 (57%), Gaps = 9/76 (11%)

Query: 46  TSNLWVKISIFVAAPAIALTAVNTYFVEAEHAEHREHLKHVPDEEWPRDYEFQNLRQKPF 105
           ++ +W  ++ FVA P +A++ +N Y +++ H EH E  + +        Y    +R KPF
Sbjct: 34  SARMWKTLTFFVALPGVAVSMLNVY-LKSHHGEH-ERPEFIA-------YPHLRIRTKPF 84

Query: 106 FWGDGDKTLFWNPVIN 121
            WGDG+ TLF NP +N
Sbjct: 85  PWGDGNHTLFHNPHVN 100


>CE01308 [C] KOG3469 Cytochrome c oxidase subunit VIa/COX13
          Length = 128

 Score = 51.6 bits (122), Expect = 2e-07
 Identities = 28/88 (31%), Positives = 43/88 (48%), Gaps = 8/88 (9%)

Query: 30  QAYKDYMKHSTEHAKQTSNLWVKISIFVAAPAIALTAVNTYFVEAEHAEHREHLKHVPDE 89
           + +K+      + A   S  W KI    + P +ALT      + A   +H++H+ H   E
Sbjct: 31  EGFKESYVTPLKQAHNASETWKKIFFIASIPCLALT------MYAAFKDHKKHMSHERPE 84

Query: 90  EWPRDYEFQNLRQKPFFWGDGDKTLFWN 117
               +Y F N+R KPF W DG+ +LF N
Sbjct: 85  HV--EYAFLNVRNKPFPWSDGNHSLFHN 110


>Hs4885149 [C] KOG3469 Cytochrome c oxidase subunit VIa/COX13
          Length = 97

 Score = 47.8 bits (112), Expect = 2e-06
 Identities = 26/80 (32%), Positives = 39/80 (48%), Gaps = 11/80 (13%)

Query: 42  HAKQTSNLWVKISIFVAAPAIALTAVNTYFVEAEHAEHREHLKHVPDEEWPRDYEFQNLR 101
           H    +  W  ++  +A P++AL   N+Y           H  H P  E+ R Y+   +R
Sbjct: 20  HGGAGARTWRLLTFVLALPSVALCTFNSYL----------HSGHRPRPEF-RPYQHLRIR 68

Query: 102 QKPFFWGDGDKTLFWNPVIN 121
            KP+ WGDG+ TLF N  +N
Sbjct: 69  TKPYPWGDGNHTLFHNSHVN 88


  Database: KOG eukaryal database 04/03
    Posted date:  Apr 14, 2003  1:07 PM
  Number of letters in database: 30,389,216
  Number of sequences in database:  60,738
  
Lambda     K      H
   0.320    0.133    0.422 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,047,564
Number of Sequences: 60738
Number of extensions: 307108
Number of successful extensions: 692
Number of sequences better than 1.0e-05: 6
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 684
Number of HSP's gapped (non-prelim): 6
length of query: 127
length of database: 30,389,216
effective HSP length: 103
effective length of query: 24
effective length of database: 24,133,202
effective search space: 579196848
effective search space used: 579196848
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)