ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactVI2399 good A KOG3448 RNA processing and modification Predicted snRNP core protein
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactVI2399 856056 856340 95
(95 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YBL026w [A] KOG3448 Predicted snRNP core protein 152 8e-38
SPCC1620.01c [A] KOG3448 Predicted snRNP core protein 117 2e-27
Hs10863977 [A] KOG3448 Predicted snRNP core protein 112 9e-26
7294589 [A] KOG3448 Predicted snRNP core protein 109 6e-25
At1g03330 [A] KOG3448 Predicted snRNP core protein 109 7e-25
CE23975 [A] KOG3448 Predicted snRNP core protein 106 6e-24
ECU09g1805 [A] KOG3448 Predicted snRNP core protein 52 1e-07
CE01277 [A] KOG3293 Small nuclear ribonucleoprotein (snRNP) 52 2e-07
CE02065 [A] KOG3428 Small nuclear ribonucleoprotein SMD1 and rel... 50 5e-07
SPAC27D7.07c [A] KOG3428 Small nuclear ribonucleoprotein SMD1 an... 49 1e-06
Hs6912486 [A] KOG3293 Small nuclear ribonucleoprotein (snRNP) 49 1e-06
>YBL026w [A] KOG3448 Predicted snRNP core protein
Length = 95
Score = 152 bits (384), Expect = 8e-38
Identities = 76/95 (80%), Positives = 85/95 (89%)
Query: 1 MLLFSFFKTLVDHEVKVELKNGIELTGTLKSVDQFLNLKLDNISSNNNEKYPHLSSVRNM 60
ML FSFFKTLVD EV VELKN IE+ GTL+SVDQFLNLKLDNIS + +KYPHL SVRN+
Sbjct: 1 MLFFSFFKTLVDQEVVVELKNDIEIKGTLQSVDQFLNLKLDNISCTDEKKYPHLGSVRNI 60
Query: 61 FIRGSTVRYVHLKKSMVDTNLLQDATRRELMSERK 95
FIRGSTVRYV+L K+MVDTNLLQDATRRE+M+ERK
Sbjct: 61 FIRGSTVRYVYLNKNMVDTNLLQDATRREVMTERK 95
>SPCC1620.01c [A] KOG3448 Predicted snRNP core protein
Length = 96
Score = 117 bits (294), Expect = 2e-27
Identities = 56/95 (58%), Positives = 75/95 (78%)
Query: 1 MLLFSFFKTLVDHEVKVELKNGIELTGTLKSVDQFLNLKLDNISSNNNEKYPHLSSVRNM 60
ML +SFFKTL+D EV VELKN + + G LKSVDQFLN+KL+NIS + KYPH+++V+++
Sbjct: 1 MLFYSFFKTLIDTEVTVELKNDMSIRGILKSVDQFLNVKLENISVVDASKYPHMAAVKDL 60
Query: 61 FIRGSTVRYVHLKKSMVDTNLLQDATRRELMSERK 95
FIRGS VRYVH+ + VDT LL DA RR+L + ++
Sbjct: 61 FIRGSVVRYVHMSSAYVDTILLADACRRDLANNKR 95
>Hs10863977 [A] KOG3448 Predicted snRNP core protein
Length = 95
Score = 112 bits (280), Expect = 9e-26
Identities = 55/95 (57%), Positives = 71/95 (73%)
Query: 1 MLLFSFFKTLVDHEVKVELKNGIELTGTLKSVDQFLNLKLDNISSNNNEKYPHLSSVRNM 60
ML +SFFK+LV +V VELKN + + GTL SVDQ+LN+KL +IS + EKYPH+ SV+N
Sbjct: 1 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNC 60
Query: 61 FIRGSTVRYVHLKKSMVDTNLLQDATRRELMSERK 95
FIRGS VRYV L VDT LLQDA R+E + +++
Sbjct: 61 FIRGSVVRYVQLPADEVDTQLLQDAARKEALQQKQ 95
>7294589 [A] KOG3448 Predicted snRNP core protein
Length = 95
Score = 109 bits (273), Expect = 6e-25
Identities = 55/89 (61%), Positives = 67/89 (74%)
Query: 1 MLLFSFFKTLVDHEVKVELKNGIELTGTLKSVDQFLNLKLDNISSNNNEKYPHLSSVRNM 60
ML +SFFK+LV EV VELKN + + GTL SVDQ+LN+KL +IS + +KYPH+ SV+N
Sbjct: 1 MLFYSFFKSLVGKEVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPDKYPHMLSVKNC 60
Query: 61 FIRGSTVRYVHLKKSMVDTNLLQDATRRE 89
FIRGS VRYV L VDT LLQDA R+E
Sbjct: 61 FIRGSVVRYVQLPGDEVDTQLLQDAARKE 89
>At1g03330 [A] KOG3448 Predicted snRNP core protein
Length = 93
Score = 109 bits (272), Expect = 7e-25
Identities = 55/89 (61%), Positives = 65/89 (72%)
Query: 1 MLLFSFFKTLVDHEVKVELKNGIELTGTLKSVDQFLNLKLDNISSNNNEKYPHLSSVRNM 60
ML FS+FK LV EV VELKN + + GTL SVDQ+LN+KL+N + +KYPH+ SVRN
Sbjct: 1 MLFFSYFKDLVGQEVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
Query: 61 FIRGSTVRYVHLKKSMVDTNLLQDATRRE 89
FIRGS VRYV L K VD +LL DA RRE
Sbjct: 61 FIRGSVVRYVQLPKDGVDVDLLHDAARRE 89
>CE23975 [A] KOG3448 Predicted snRNP core protein
Length = 103
Score = 106 bits (264), Expect = 6e-24
Identities = 51/93 (54%), Positives = 69/93 (73%)
Query: 2 LLFSFFKTLVDHEVKVELKNGIELTGTLKSVDQFLNLKLDNISSNNNEKYPHLSSVRNMF 61
L FSFFK+LV +V VELKN + + GTL SVDQ+LN+KL +I+ ++ E++PH+ SV+N F
Sbjct: 8 LFFSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNMKLTDITVSDPERFPHMVSVKNCF 67
Query: 62 IRGSTVRYVHLKKSMVDTNLLQDATRRELMSER 94
IRGS VRYV L VDT LL D+ R+EL+ +
Sbjct: 68 IRGSVVRYVQLPSDQVDTQLLADSCRKELLDSK 100
>ECU09g1805 [A] KOG3448 Predicted snRNP core protein
Length = 94
Score = 52.4 bits (124), Expect = 1e-07
Identities = 30/83 (36%), Positives = 50/83 (60%), Gaps = 5/83 (6%)
Query: 1 MLLFSFFKTLVDHEVKVELKNGIELTGTLKSVDQFLNLKLDNISSNNNEKYPHLSSVRNM 60
ML + FF++ + V V LK G+ ++G L +D +LNL L ++ ++ +P LSS+
Sbjct: 1 MLFYEFFRSSIGSRVSVMLKAGVYVSGRLGGIDPYLNLSLLDVRILSS--HPGLSSISVC 58
Query: 61 FIRGSTVRYVHLKKSMVDTNLLQ 83
IRGS+++Y+ + K D LLQ
Sbjct: 59 SIRGSSIKYILVDK---DAKLLQ 78
>CE01277 [A] KOG3293 Small nuclear ribonucleoprotein (snRNP)
Length = 123
Score = 51.6 bits (122), Expect = 2e-07
Identities = 27/80 (33%), Positives = 50/80 (61%), Gaps = 5/80 (6%)
Query: 1 MLLFSFFKTLVDHEVKVELKNGIELTGTLKSVDQFLNLKLDNI--SSNNNEKYPHLSSVR 58
+L S KT +H + VELKNG G LK+ D ++N+ L ++ +S + +K+ +S
Sbjct: 2 VLPLSLLKTAQNHPMLVELKNGETYNGHLKACDSWMNIHLVDVIFTSKDGDKFFKMSEA- 60
Query: 59 NMFIRGSTVRYVHLKKSMVD 78
++RGST++Y+ + +++VD
Sbjct: 61 --YVRGSTIKYLRIPETVVD 78
>CE02065 [A] KOG3428 Small nuclear ribonucleoprotein SMD1 and related
snRNPs
Length = 126
Score = 50.1 bits (118), Expect = 5e-07
Identities = 31/95 (32%), Positives = 49/95 (50%), Gaps = 3/95 (3%)
Query: 1 MLLFSFFKTLVDHEVKVELKNGIELTGTLKSVDQFLNLKLDNISSNNNEKYPHLSSVRNM 60
M L F L V +ELKNG +++GT+ VD +N L +S K P + +
Sbjct: 1 MKLVRFLMKLSHETVNIELKNGTQVSGTIMGVDVAMNTHLRAVSMTVKNKEP--VKLDTL 58
Query: 61 FIRGSTVRYVHLKKSM-VDTNLLQDATRRELMSER 94
IRG+ +RY+ L + +DT L+ D R++ + R
Sbjct: 59 SIRGNNIRYIILPDPLALDTLLIDDEPRKKARAAR 93
>SPAC27D7.07c [A] KOG3428 Small nuclear ribonucleoprotein SMD1 and related
snRNPs
Length = 117
Score = 48.9 bits (115), Expect = 1e-06
Identities = 31/88 (35%), Positives = 46/88 (52%), Gaps = 3/88 (3%)
Query: 1 MLLFSFFKTLVDHEVKVELKNGIELTGTLKSVDQFLNLKLDNISSNNNEKYPHLSSVRNM 60
M L F L + V +ELKNG + GT+ SVD +N L + + P V +
Sbjct: 1 MKLVRFLMKLTNETVSIELKNGTIVHGTITSVDMQMNTHLKAVKMTVKGREP--VPVETL 58
Query: 61 FIRGSTVRYVHLKKSM-VDTNLLQDATR 87
IRG+ +RY L S+ +DT L+ D+T+
Sbjct: 59 SIRGNNIRYYILPDSLPLDTLLIDDSTK 86
>Hs6912486 [A] KOG3293 Small nuclear ribonucleoprotein (snRNP)
Length = 139
Score = 48.9 bits (115), Expect = 1e-06
Identities = 27/80 (33%), Positives = 45/80 (55%), Gaps = 5/80 (6%)
Query: 1 MLLFSFFKTLVDHEVKVELKNGIELTGTLKSVDQFLNLKLDNI--SSNNNEKYPHLSSVR 58
ML S KT +H + VELKNG G L S D ++N+ L + +S + +K+ +
Sbjct: 1 MLPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMP--- 57
Query: 59 NMFIRGSTVRYVHLKKSMVD 78
+IRGST++Y+ + ++D
Sbjct: 58 ECYIRGSTIKYLRIPDEIID 77
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.318 0.134 0.358
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,888,704
Number of Sequences: 60738
Number of extensions: 171992
Number of successful extensions: 673
Number of sequences better than 1.0e-05: 11
Number of HSP's better than 0.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 662
Number of HSP's gapped (non-prelim): 12
length of query: 95
length of database: 30,389,216
effective HSP length: 71
effective length of query: 24
effective length of database: 26,076,818
effective search space: 625843632
effective search space used: 625843632
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)