ORF      STATUS       Function Best COG  Functional category                                          Pathways and functional systems
r_klactVI2400   suspect: LH   R     KOG0017  General function prediction only                               FOG: Transposon-encoded proteins with TYA, reverse transcriptase, integrase domains in various combinations

BLASTP 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= r_klactVI2400 856856 856470 -129 
         (129 letters)

Database: KOG eukaryal database 04/03 
           60,738 sequences; 30,389,216 total letters

Searching..................................................done

Color Key for Alignment Scores:   


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

YER137c [R] KOG0017 FOG: Transposon-encoded proteins with TYA re...    79   1e-15

>YER137c [R] KOG0017 FOG: Transposon-encoded proteins with TYA reverse
           transcriptase integrase domains in various combinations
          Length = 148

 Score = 79.3 bits (194), Expect = 1e-15
 Identities = 46/139 (33%), Positives = 76/139 (54%), Gaps = 21/139 (15%)

Query: 7   IIKQSEALDQLAKLVLSQSQKKQSTLPSLKEEYENKLKNVDELISMITSVE-------LD 59
           I++ S+A+D LAKL++S    KQ     L+ EYE+KLK +++ I+++  +        ++
Sbjct: 12  IVRLSQAMDVLAKLIIS----KQKDGSQLQVEYEHKLKELEKFINLLLGLHESTVGSMMN 67

Query: 60  KEKFSKMISKQIEIIQKDGQEYALIPVQRTPKQAKFGKR----------KSKANNIKCSY 109
                 ++   IEI++KD Q+YALIP++   +  K              K K N IKCS+
Sbjct: 68  TSVLDMVLRNGIEIMEKDDQKYALIPIKAKEEADKTTSTIQGVTSKKSSKKKKNKIKCSF 127

Query: 110 CNETGHLRSKCEKKLLGVP 128
           C+E GH R+ C  +L  +P
Sbjct: 128 CHEAGHTRAHCGARLTVIP 146


  Database: KOG eukaryal database 04/03
    Posted date:  Apr 14, 2003  1:07 PM
  Number of letters in database: 30,389,216
  Number of sequences in database:  60,738
  
Lambda     K      H
   0.310    0.128    0.336 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,142,266
Number of Sequences: 60738
Number of extensions: 274010
Number of successful extensions: 1754
Number of sequences better than 1.0e-05: 1
Number of HSP's better than  0.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1751
Number of HSP's gapped (non-prelim): 1
length of query: 129
length of database: 30,389,216
effective HSP length: 94
effective length of query: 35
effective length of database: 24,679,844
effective search space: 863794540
effective search space used: 863794540
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)