ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactVI2422 good K KOG1105 Transcription Transcription elongation factor TFIIS/Cofactor of enhancer-binding protein Sp1
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactVI2422 865303 864428 -292
(292 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YGL043w [K] KOG1105 Transcription elongation factor TFIIS/Cofact... 342 5e-94
SPAC20H4.03c [K] KOG1105 Transcription elongation factor TFIIS/C... 181 1e-45
7298202 [K] KOG1105 Transcription elongation factor TFIIS/Cofact... 125 5e-29
At2g38560 [K] KOG1105 Transcription elongation factor TFIIS/Cofa... 119 5e-27
Hs4507385 [K] KOG1105 Transcription elongation factor TFIIS/Cofa... 113 4e-25
Hs5803191 [K] KOG1105 Transcription elongation factor TFIIS/Cofa... 108 1e-23
Hs18599869 [K] KOG1105 Transcription elongation factor TFIIS/Cof... 107 2e-23
Hs20473950 [K] KOG1105 Transcription elongation factor TFIIS/Cof... 102 5e-22
ECU04g0180 [K] KOG1105 Transcription elongation factor TFIIS/Cof... 97 3e-20
CE03726 [K] KOG1105 Transcription elongation factor TFIIS/Cofact... 97 4e-20
Hs20483941 [K] KOG1105 Transcription elongation factor TFIIS/Cof... 87 2e-17
7293097 [K] KOG1105 Transcription elongation factor TFIIS/Cofact... 80 5e-15
Hs17469320 [K] KOG1105 Transcription elongation factor TFIIS/Cof... 69 8e-12
Hs7706499 [K] KOG2906 RNA polymerase III subunit C11 50 3e-06
YDR045c [K] KOG2906 RNA polymerase III subunit C11 50 4e-06
>YGL043w [K] KOG1105 Transcription elongation factor TFIIS/Cofactor of
enhancer-binding protein Sp1
Length = 309
Score = 342 bits (876), Expect = 5e-94
Identities = 176/310 (56%), Positives = 217/310 (69%), Gaps = 19/310 (6%)
Query: 1 METKDVLEAVKGLEKNKNNNDVVFKILQSLDKDLKDVNEKLLRETKVGVVVNQFKKSSNP 60
M++K+VL VK LEKNK+N+ V +IL LDK+ EKLLRETKVGV VN+FKKS+N
Sbjct: 1 MDSKEVLVHVKNLEKNKSNDAAVLEILHVLDKEFVPT-EKLLRETKVGVEVNKFKKSTNV 59
Query: 61 DIVKLVKKMILSWKDAVAREKKSK------------------LXXXXXXXXXXXXXXXXE 102
+I KLVKKMI SWKDA+ + K+S+ +
Sbjct: 60 EISKLVKKMISSWKDAINKNKRSRQAQQHHQDHAPGNAEDKTTVGESVNGVQQPASSQSD 119
Query: 103 AVKKEKYVSKAPRNAKNDGVKTDIYGVKIRDMAIRALYDALAKESEHPPVAILDTVMSIE 162
A+K++KYVS PRN+KNDGV T IY K+RD ++ALYD LAKESEHPP +IL T +IE
Sbjct: 120 AMKQDKYVSTKPRNSKNDGVDTAIYHHKLRDQVLKALYDVLAKESEHPPQSILHTAKAIE 179
Query: 163 TEMANLFNPESDEKGYRDKYRIIYSNIISKNNPDLKHRITNGEVSAKHLVTADPKDLAPE 222
+EM + N +++E Y+ +YRIIYSN+ISKNNPDLKH+I NG+++ + L T D KDLAP
Sbjct: 180 SEMNKVNNCDTNEAAYKARYRIIYSNVISKNNPDLKHKIANGDITPEFLATCDAKDLAPA 239
Query: 223 HLXXXXXXXXXQNLFNAQGATVERSVTDRFQCGKCKQRKVSYYQLQTRSADEPLTTFCTC 282
L QNL+NAQGAT+ERSVTDRF CGKCK++KVSYYQLQTRSADEPLTTFCTC
Sbjct: 240 PLKQKIEEIAKQNLYNAQGATIERSVTDRFTCGKCKEKKVSYYQLQTRSADEPLTTFCTC 299
Query: 283 ENCGNRWKFS 292
E CGNRWKFS
Sbjct: 300 EACGNRWKFS 309
>SPAC20H4.03c [K] KOG1105 Transcription elongation factor TFIIS/Cofactor of
enhancer-binding protein Sp1
Length = 293
Score = 181 bits (459), Expect = 1e-45
Identities = 102/296 (34%), Positives = 159/296 (53%), Gaps = 7/296 (2%)
Query: 1 METKDVLEAVKGLEK--NKNNNDVVFKILQSLDKDLKDVNEKLLRETKVGVVVNQFKKSS 58
M++ D+ A LEK N + + I+ L ++ E+LL+ET++G+VV + +
Sbjct: 1 MDSADIRSAKAALEKAIQGKNIETIINIMTRLKNEVV-ATEELLKETRLGLVVGKLRSHP 59
Query: 59 NPDIVKLVKKMILSWKDAVAREKKSKLXXXXXXXXXXXXXXXXEAVKK-EKYVSKAPRNA 117
N + + ++++ WK V++ + K +A K+ +K S R
Sbjct: 60 NEKVGEQAREIVKKWKADVSKGRPLKTTTTTSSTPSKHADVGSQAQKQVQKQSSSGQRTF 119
Query: 118 KNDGVKTDIYGVKIRDMAIRALYDALAKESEHPPVAILDTVMSIETE-MANLFNPESDEK 176
K+D V ++ KIR+ I +Y+AL +S+ I+ I+ + +A E
Sbjct: 120 KSDNVNVNVTDDKIRNNCIGLMYNALVIDSDESSSLIIAKAKEIDAQVLARAAGKTGSE- 178
Query: 177 GYRDKYRIIYSNIISKNNPDLKHRITNGEVSAKHLVTADPKDLAPEHLXXXXXXXXXQNL 236
YR++ R +Y N+ KNNP L+ + E++ + L T +LA E +NL
Sbjct: 179 -YRNRMRSLYMNLKDKNNPKLRASVLRNEITPQRLSTMTSAELASEDRRKEDAKLEQENL 237
Query: 237 FNAQGATVERSVTDRFQCGKCKQRKVSYYQLQTRSADEPLTTFCTCENCGNRWKFS 292
F+AQGA +++VTD F CGKCKQ+KVSYYQ+QTRSADEP+TTFC C CGNRWKFS
Sbjct: 238 FHAQGAKPQKAVTDLFTCGKCKQKKVSYYQMQTRSADEPMTTFCECTVCGNRWKFS 293
>7298202 [K] KOG1105 Transcription elongation factor TFIIS/Cofactor of
enhancer-binding protein Sp1
Length = 313
Score = 125 bits (315), Expect = 5e-29
Identities = 87/293 (29%), Positives = 132/293 (44%), Gaps = 34/293 (11%)
Query: 23 VFKILQSLDKDLKDVNEKLLRETKVGVVVNQFKKSSNPD-IVKLVKKMILSWK------- 74
+ K LQ+L+ +N +L +T++G+ VN+ +KSS D ++ L K +I +WK
Sbjct: 30 LLKALQTLN-----INLDILTKTRIGMTVNELRKSSKDDEVIALAKTLIKNWKRFLASPA 84
Query: 75 -----DAVAREKKSKLXXXXXXXXXXXXXXXXEAVKKEKYVSKAPRNAKN---------- 119
++ A+E S K S + K
Sbjct: 85 PTTPNNSSAKEGSSNNSSASKSTSAAKSSSSISGKDKSSSSSSSKDKEKKGSTSSSQTSF 144
Query: 120 -DGVKTDIYGVKIRDMAIRALYDALAKESEHPPVAILDTVMSIETEMANLFNPESDEKGY 178
G TD +K R+M AL K E P M+ E E A + + Y
Sbjct: 145 PSGGMTDAVRIKCREMLATAL-----KIGEVPEGCGEPEEMAAELEDAIYSEFNNTDMKY 199
Query: 179 RDKYRIIYSNIISKNNPDLKHRITNGEVSAKHLVTADPKDLAPEHLXXXXXXXXXQNLFN 238
+++ R +N+ NP L+ G V+AK L P+++A + + + + +
Sbjct: 200 KNRIRSRVANLKDPKNPGLRGNFMCGAVTAKQLAKMTPEEMASDEMKKLREKFVKEAIND 259
Query: 239 AQGATVERSVTDRFQCGKCKQRKVSYYQLQTRSADEPLTTFCTCENCGNRWKF 291
AQ ATV+ + TD +C KCK+R +Y QLQTRSADEP+TTF C CGNRWKF
Sbjct: 260 AQLATVQGTKTDLLKCAKCKKRNCTYNQLQTRSADEPMTTFVMCNECGNRWKF 312
>At2g38560 [K] KOG1105 Transcription elongation factor TFIIS/Cofactor of
enhancer-binding protein Sp1
Length = 378
Score = 119 bits (298), Expect = 5e-27
Identities = 70/203 (34%), Positives = 106/203 (51%), Gaps = 15/203 (7%)
Query: 102 EAVKKEKYVS-KAPRNAKNDGVK-------TDIYGVKIRDMAIRALYDALAKESEHPPVA 153
E V K+ S KAP A N K D KIR++ + AL + ++ +
Sbjct: 177 EKVSKDNQSSMKAPAKAANAPPKLTAMLKCNDPVRDKIRELLVEALCRVAGEADDYERES 236
Query: 154 I-----LDTVMSIETEMANLFNPESDEKGYRDKYRIIYSNIISKNNPDLKHRITNGEVSA 208
+ L +S+E+ M + + + KYR I N+ NNPDL+ R+ GE+S
Sbjct: 237 VNASDPLRVAVSVESLMFEKLGRSTGAQ--KLKYRSIMFNLRDSNNPDLRRRVLTGEISP 294
Query: 209 KHLVTADPKDLAPEHLXXXXXXXXXQNLFNAQGATVERSVTDRFQCGKCKQRKVSYYQLQ 268
+ L+T +D+A + + LF+ + ++ TD+F+CG+C QRK +YYQ+Q
Sbjct: 295 EKLITLSAEDMASDKRKQENNQIKEKALFDCERGLAAKASTDQFKCGRCGQRKCTYYQMQ 354
Query: 269 TRSADEPLTTFCTCENCGNRWKF 291
TRSADEP+TT+ TC NC N WKF
Sbjct: 355 TRSADEPMTTYVTCVNCDNHWKF 377
>Hs4507385 [K] KOG1105 Transcription elongation factor TFIIS/Cofactor of
enhancer-binding protein Sp1
Length = 299
Score = 113 bits (282), Expect = 4e-25
Identities = 75/263 (28%), Positives = 124/263 (46%), Gaps = 19/263 (7%)
Query: 41 LLRETKVGVVVNQFKK-SSNPDIVKLVKKMILSWK------DAVAREKKSKLXXXXXXXX 93
LL+ T+VG+ VN +K SS+ +++ L K +I SWK DA ARE+ +
Sbjct: 43 LLQSTRVGMSVNALRKQSSDEEVIALAKSLIKSWKKLLDASDAKARERGRGMPLPTSSRD 102
Query: 94 XXXXXXXXEAVKKEKYVSKAPRNAKNDG-----VKTDIYGVKIRDMAIRALYDALAKESE 148
+ +K + +AP + V D K R+M L AL + +
Sbjct: 103 ASEAP---DPSRKRPELPRAPSTPRITTFPPVPVTCDAVRNKCREM----LTAALQTDHD 155
Query: 149 HPPVAILDTVMSIETEMANLFNPESDEKGYRDKYRIIYSNIISKNNPDLKHRITNGEVSA 208
H + +S + E + + + Y+++ R SN+ NPDL+ + G ++
Sbjct: 156 HVAIGADCERLSAQIEECIFRDVGNTDMKYKNRVRSRISNLKDAKNPDLRRNVLCGAITP 215
Query: 209 KHLVTADPKDLAPEHLXXXXXXXXXQNLFNAQGATVERSVTDRFQCGKCKQRKVSYYQLQ 268
+ + +++A + L + + Q A + TD F CGKC+++ +Y Q+Q
Sbjct: 216 QQIAVMTSEEMASDELKEIRKAMTKEAIREHQMARTGGTQTDLFTCGKCRKKNCTYTQVQ 275
Query: 269 TRSADEPLTTFCTCENCGNRWKF 291
TRS+DEP+TTF C CGNRWKF
Sbjct: 276 TRSSDEPMTTFVVCNECGNRWKF 298
>Hs5803191 [K] KOG1105 Transcription elongation factor TFIIS/Cofactor of
enhancer-binding protein Sp1
Length = 301
Score = 108 bits (269), Expect = 1e-23
Identities = 77/280 (27%), Positives = 125/280 (44%), Gaps = 28/280 (10%)
Query: 32 KDLKDV--NEKLLRETKVGVVVNQFKK-SSNPDIVKLVKKMILSWK---DAVAREK---- 81
K+LK++ +LL+ T++G+ VN +K S++ ++ L K +I SWK D + EK
Sbjct: 29 KELKNIPMTLELLQSTRIGMSVNAIRKQSTDEEVTSLAKSLIKSWKKLLDGPSTEKDLDE 88
Query: 82 ----------KSKLXXXXXXXXXXXXXXXXEAVKKEKYVSKAPRNAKNDGVKTDIYGVKI 131
S E ++ YVS PR +D +K
Sbjct: 89 KKKEPAITSQNSPEAREESTSSGNVSNRKDETNARDTYVSSFPRAPST----SDSVRLKC 144
Query: 132 RDMAIRALYDALAKESEHPPVAILDTVMSIETEMANLFNPESDEKGYRDKYRIIYSNIIS 191
R+M L AL ++ + + + + E A + + Y+++ R SN+
Sbjct: 145 REM----LAAALRTGDDYIAIGADEEELGSQIEEAIYQEIRNTDMKYKNRVRSRISNLKD 200
Query: 192 KNNPDLKHRITNGEVSAKHLVTADPKDLAPEHLXXXXXXXXXQNLFNAQGATVERSVTDR 251
NP+L+ + G + +++A + L + + Q A + TD
Sbjct: 201 AKNPNLRKNVLCGNIPPDLFARMTAEEMASDELKEMRKNLTKEAIREHQMAKTGGTQTDL 260
Query: 252 FQCGKCKQRKVSYYQLQTRSADEPLTTFCTCENCGNRWKF 291
F CGKCK++ +Y Q+QTRSADEP+TTF C CGNRWKF
Sbjct: 261 FTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRWKF 300
>Hs18599869 [K] KOG1105 Transcription elongation factor TFIIS/Cofactor of
enhancer-binding protein Sp1
Length = 301
Score = 107 bits (267), Expect = 2e-23
Identities = 77/280 (27%), Positives = 125/280 (44%), Gaps = 28/280 (10%)
Query: 32 KDLKDV--NEKLLRETKVGVVVNQFKK-SSNPDIVKLVKKMILSWK---DAVAREK---- 81
K+LK++ +LL+ T++G+ VN +K S++ ++ L K +I SWK D + EK
Sbjct: 29 KELKNIPMTLELLQSTRIGMSVNAIRKQSTDEEVTSLAKSLIKSWKKLLDGPSTEKDLDE 88
Query: 82 ----------KSKLXXXXXXXXXXXXXXXXEAVKKEKYVSKAPRNAKNDGVKTDIYGVKI 131
S E ++ YVS PR +D +K
Sbjct: 89 KKKEPAITSQNSPEAREESTSSGNVSNRKDETNARDTYVSSFPRAPST----SDSVQLKC 144
Query: 132 RDMAIRALYDALAKESEHPPVAILDTVMSIETEMANLFNPESDEKGYRDKYRIIYSNIIS 191
R+M L AL ++ + + + + E A + + Y+++ R SN+
Sbjct: 145 REM----LAAALRTGDDYIAIGADEEELGSQIEEAIYQEIRNTDMKYKNRVRSRISNLKD 200
Query: 192 KNNPDLKHRITNGEVSAKHLVTADPKDLAPEHLXXXXXXXXXQNLFNAQGATVERSVTDR 251
NP+L+ + G + +++A + L + + Q A + TD
Sbjct: 201 AKNPNLRKNVLCGNIPPDLFARMTAEEMASDELKEMWKNLTKEAIREHQMAKTGGTQTDL 260
Query: 252 FQCGKCKQRKVSYYQLQTRSADEPLTTFCTCENCGNRWKF 291
F CGKCK++ +Y Q+QTRSADEP+TTF C CGNRWKF
Sbjct: 261 FTCGKCKKKNCTYTQVQTRSADEPVTTFVVCNECGNRWKF 300
>Hs20473950 [K] KOG1105 Transcription elongation factor TFIIS/Cofactor of
enhancer-binding protein Sp1
Length = 348
Score = 102 bits (255), Expect = 5e-22
Identities = 54/164 (32%), Positives = 83/164 (49%)
Query: 128 GVKIRDMAIRALYDALAKESEHPPVAILDTVMSIETEMANLFNPESDEKGYRDKYRIIYS 187
G +RD + L AL + ++ + M+ E E +S + YR++ R S
Sbjct: 184 GDSVRDKCVEMLSAALKADDDYKDYGVNCDKMASEIEDHIYQELKSTDMKYRNRVRSRIS 243
Query: 188 NIISKNNPDLKHRITNGEVSAKHLVTADPKDLAPEHLXXXXXXXXXQNLFNAQGATVERS 247
N+ NP L+ + +G +SA + +++A + L + + Q A +
Sbjct: 244 NLKDPRNPGLRRNVLSGAISAGLIAKMTAEEMASDELRELRNAMTQEAIREHQMAKTGGT 303
Query: 248 VTDRFQCGKCKQRKVSYYQLQTRSADEPLTTFCTCENCGNRWKF 291
TD FQC KCK++ +Y Q+QTRSADEP+TTF C CGNRWKF
Sbjct: 304 TTDLFQCSKCKKKNCTYNQVQTRSADEPMTTFVLCNECGNRWKF 347
>ECU04g0180 [K] KOG1105 Transcription elongation factor TFIIS/Cofactor of
enhancer-binding protein Sp1
Length = 257
Score = 97.1 bits (240), Expect = 3e-20
Identities = 77/259 (29%), Positives = 112/259 (42%), Gaps = 39/259 (15%)
Query: 61 DIVKLVKKMILSWKDAVAREKKSKLXXXXXXXXXXXXXXXXEAVKKEKY----------- 109
++ KLVKK D V K +A+ + KY
Sbjct: 9 EVAKLVKKRDFKGLDRVLSTAKGISALDLKKLAKLSDSARIQALIENKYSEVVKHQVEGG 68
Query: 110 -------VSKAPRNAKNDGVKTDIY-----GVKIRDMAIRALYDALA---KESEHPPVAI 154
KAP K+D + G +D +I+ +DA+ + + A+
Sbjct: 69 TKDEAGMTGKAPSPLKSDADSSSALEEVATGDSQKDRSIKMFFDAIKTNISDCNNASAAL 128
Query: 155 LDTVMSIETEMANLF--NPESDEKGYRDKYRIIYSNIISKNNPDLKHRITNGEVSAKHLV 212
L ++IE +F NP K R K N+ KNNP L R+ NG++S V
Sbjct: 129 LARQITIE-----IFGRNPSDIAKLIRSKCL----NLKDKNNPALCRRVYNGDISPSRYV 179
Query: 213 TADPKDLAPEHLXXXXXXXXXQNLFNAQGATVERSVTDRFQCGKCKQRKVSYYQLQTRSA 272
+++ E L +L+ Q T +++ TD F+C KC +RK SY QLQTRS
Sbjct: 180 DMSSEEMKSESLKNEEVKMIEVSLYECQIPT-QKAETDIFKCSKCGERKCSYRQLQTRSG 238
Query: 273 DEPLTTFCTCENCGNRWKF 291
DEP+TTF TCE CGN+W+F
Sbjct: 239 DEPMTTFVTCE-CGNKWRF 256
>CE03726 [K] KOG1105 Transcription elongation factor TFIIS/Cofactor of
enhancer-binding protein Sp1
Length = 308
Score = 96.7 bits (239), Expect = 4e-20
Identities = 75/283 (26%), Positives = 124/283 (43%), Gaps = 21/283 (7%)
Query: 25 KILQSLDKDLKDVNEKLLRETKVGVVVNQFKKSSNPDIV-KLVKKMILSWKDAVAREKKS 83
K+L L K + +++++T +G+ VN +K D V K K +I WK+ V + KS
Sbjct: 30 KLLDQLSKIPMSI--EIIQKTNIGIKVNMMRKKVTDDAVAKRAKNIIKDWKNVVDGKSKS 87
Query: 84 KLXXXXXXXXXXXXXXXXEAVKKEKYVSKAPRNAKNDGVKTDIYGV-------------- 129
+ EA K EK +AP + +I
Sbjct: 88 QDDGGAPPAKKHRKESVEEA-KPEKKKIEAPYKRPEPSSRPEIVAQFASASFPPKHLEND 146
Query: 130 KIRDMAIRALYDALAKESEHPPVAILDTVMSIETEMANLFNPESD-EKGYRDKYRIIYSN 188
+ R + + L AL + + P + ++++ E L++ D K Y R N
Sbjct: 147 ETRLKSAQLLLSAL-RFGDMPQGTLDPEELAVQIE-EKLYSVHRDTNKSYSAAVRSRIFN 204
Query: 189 IISKNNPDLKHRITNGEVSAKHLVTADPKDLAPEHLXXXXXXXXXQNLFNAQGATVERSV 248
+ K N L+ + G V A+ T +++A + + + Q + + +
Sbjct: 205 LRDKKNLALRENVLTGVVRAEKFATMTSEEMASAEIREMRDKFTKEAILEHQMSVQQGTP 264
Query: 249 TDRFQCGKCKQRKVSYYQLQTRSADEPLTTFCTCENCGNRWKF 291
+D F+CGKC ++ +Y QLQTRS+DEP+TTF C CGNRWKF
Sbjct: 265 SDMFKCGKCGKKNCTYTQLQTRSSDEPMTTFVFCLECGNRWKF 307
>Hs20483941 [K] KOG1105 Transcription elongation factor TFIIS/Cofactor of
enhancer-binding protein Sp1
Length = 155
Score = 87.4 bits (215), Expect = 2e-17
Identities = 41/114 (35%), Positives = 61/114 (52%)
Query: 178 YRDKYRIIYSNIISKNNPDLKHRITNGEVSAKHLVTADPKDLAPEHLXXXXXXXXXQNLF 237
Y+++ R SN+ NP+L+ + G + +++A + L + +
Sbjct: 41 YKNRVRSRISNLKDAKNPNLRKNVLCGNIPPDLFARMTAEEMASDELKEMRKNLTKEAIR 100
Query: 238 NAQGATVERSVTDRFQCGKCKQRKVSYYQLQTRSADEPLTTFCTCENCGNRWKF 291
Q A + TD F CGKCK++ +Y Q+QTRSADEP+TTF C CGNRWKF
Sbjct: 101 EHQMAKTGGTQTDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRWKF 154
>7293097 [K] KOG1105 Transcription elongation factor TFIIS/Cofactor of
enhancer-binding protein Sp1
Length = 160
Score = 79.7 bits (195), Expect = 5e-15
Identities = 47/162 (29%), Positives = 80/162 (49%), Gaps = 7/162 (4%)
Query: 129 VKIRDMAIRALYDALAKESEHPPVAILDTVMSIETEMANLFNPESDEKGYRDKYRIIYSN 188
+K R+M AL K PP M+ + E A + + Y+++ R +N
Sbjct: 5 IKCREMLATAL-----KSGNMPPGCGDPDDMAAKLEDAIYGDLNGCKVKYKNRIRSRLAN 59
Query: 189 IISKNNPDLKHRITNGEVSAKHLVTADPKDLAPEHLXXXXXXXXXQNLFNAQGATVERSV 248
+ NP+L+ + G+++ + L P+++A + + ++ AQ A V+ +
Sbjct: 60 LRDPKNPELRQKFLLGQITPEELSKMTPEEMASDDMKQMRQKYVQDSINAAQMAKVQGTK 119
Query: 249 TDRFQCGKCKQRKVSYYQLQTRSADEPLTTFCTCENCGNRWK 290
TD+F+C +C +R S QL R DEP+ TF C+ CGNRWK
Sbjct: 120 TDQFKCERCDKRNCS--QLHIRDGDEPIITFVICDECGNRWK 159
>Hs17469320 [K] KOG1105 Transcription elongation factor TFIIS/Cofactor of
enhancer-binding protein Sp1
Length = 456
Score = 68.9 bits (167), Expect = 8e-12
Identities = 64/268 (23%), Positives = 111/268 (40%), Gaps = 42/268 (15%)
Query: 33 DLKDVNEKLLRETKVGVVVN-QFKKSSNPDIVKLVKKMILSWK---DAVAREKKSKLXXX 88
+L++V E LLR T G+++N K+S++ ++ L K + SWK D + EK
Sbjct: 221 ELQNVLE-LLRSTGTGMLLNVSLKQSTDEEVTSLAKSFVKSWKTLPDEPSTEKDPN---- 275
Query: 89 XXXXXXXXXXXXXEAVKKEKYVSKAPRNAKNDGVKTDIYGVKIRDM---AIRALYDALAK 145
+ ++ + RNA N +K R+M A+R D +
Sbjct: 276 ------------EKRIEPAMTSQNSKRNASNS------VRMKYREMLAAALRTGDDCIEM 317
Query: 146 ESEHPPVAILDTVMSIETEMANLFNPESDEKG--YRDKYRIIYSNIISKNNPDLKHRITN 203
++ + + + +PE G Y+++ + SN+ NP+L+ +
Sbjct: 318 GADEEELG---------SRIEEAVDPERGNTGMKYKNRVQSKISNLTDAKNPNLRKNASC 368
Query: 204 GEVSAKHLVTADPKDLAPEHLXXXXXXXXXQNLFNAQGATVERSVTDRFQCGKCKQRKVS 263
G + L +++A + L + + Q A + D CGKCK+ S
Sbjct: 369 GNIPPDLLARMSAEEMASDELKEMHKNLTKEAIREHQMAKTGGTQPDSLTCGKCKKNCTS 428
Query: 264 YYQLQTRSADEPLTTFCTCENCGNRWKF 291
Q+Q S EP+ TF C CGN+ KF
Sbjct: 429 -TQVQACSVGEPMATFVDCNECGNQQKF 455
>Hs7706499 [K] KOG2906 RNA polymerase III subunit C11
Length = 108
Score = 50.4 bits (119), Expect = 3e-06
Identities = 22/39 (56%), Positives = 28/39 (71%), Gaps = 2/39 (5%)
Query: 254 CGKCKQRKVSYYQLQTRSADEPLTTFCTCEN--CGNRWK 290
C KC+ + + QLQTRSADEP+TTF C N CG+RW+
Sbjct: 69 CPKCEHPRAYFMQLQTRSADEPMTTFYKCCNAQCGHRWR 107
>YDR045c [K] KOG2906 RNA polymerase III subunit C11
Length = 110
Score = 50.1 bits (118), Expect = 4e-06
Identities = 20/34 (58%), Positives = 24/34 (69%)
Query: 257 CKQRKVSYYQLQTRSADEPLTTFCTCENCGNRWK 290
C ++QLQ RSADEP+TTF C NCG+RWK
Sbjct: 75 CGGESAYFFQLQIRSADEPMTTFYKCVNCGHRWK 108
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.314 0.131 0.366
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,674,214
Number of Sequences: 60738
Number of extensions: 588554
Number of successful extensions: 1509
Number of sequences better than 1.0e-05: 15
Number of HSP's better than 0.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1488
Number of HSP's gapped (non-prelim): 17
length of query: 292
length of database: 30,389,216
effective HSP length: 105
effective length of query: 187
effective length of database: 24,011,726
effective search space: 4490192762
effective search space used: 4490192762
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)