ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactVI2427 check: MH A KOG0108 RNA processing and modification mRNA cleavage and polyadenylation factor I complex, subunit RNA15
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactVI2427 865710 866483 258
(258 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YGL044c [A] KOG0108 mRNA cleavage and polyadenylation factor I c... 247 1e-65
SPAC644.16 [A] KOG0108 mRNA cleavage and polyadenylation factor ... 90 4e-18
At1g71800 [A] KOG0108 mRNA cleavage and polyadenylation factor I... 88 1e-17
7300420 [A] KOG0108 mRNA cleavage and polyadenylation factor I c... 86 4e-17
Hs4557493 [A] KOG0108 mRNA cleavage and polyadenylation factor I... 84 2e-16
CE16126 [A] KOG0108 mRNA cleavage and polyadenylation factor I c... 83 3e-16
Hs14149675 [A] KOG0108 mRNA cleavage and polyadenylation factor ... 79 6e-15
SPBC3B9.11c [A] KOG0108 mRNA cleavage and polyadenylation factor... 77 3e-14
Hs4757926 [K] KOG0147 Transcriptional coactivator CAPER (RRM sup... 66 4e-11
CE18119 [A] KOG0108 mRNA cleavage and polyadenylation factor I c... 64 2e-10
SPAC328.05 [R] KOG0118 FOG: RRM domain 62 1e-09
At3g52660 [A] KOG0117 Heterogeneous nuclear ribonucleoprotein R ... 61 1e-09
HsM8922450 [K] KOG0147 Transcriptional coactivator CAPER (RRM su... 60 2e-09
Hs21361702 [K] KOG0147 Transcriptional coactivator CAPER (RRM su... 60 2e-09
At3g47120 [R] KOG0126 Predicted RNA-binding protein (RRM superfa... 60 4e-09
7297213 [K] KOG0147 Transcriptional coactivator CAPER (RRM super... 59 7e-09
Hs6005926 [A] KOG0120 Splicing factor U2AF large subunit (RRM su... 57 3e-08
At1g60900 [A] KOG0120 Splicing factor U2AF large subunit (RRM su... 57 3e-08
7290796 [R] KOG0118 FOG: RRM domain 57 3e-08
Hs17978512 [A] KOG0124 Polypyrimidine tract-binding protein PUF6... 56 4e-08
Hs17298690 [A] KOG0124 Polypyrimidine tract-binding protein PUF6... 56 4e-08
At4g36690 [A] KOG0120 Splicing factor U2AF large subunit (RRM su... 56 4e-08
7292088 [A] KOG0124 Polypyrimidine tract-binding protein PUF60 (... 56 6e-08
Hs20357578 [A] KOG0117 Heterogeneous nuclear ribonucleoprotein R... 55 1e-07
Hs20357575 [A] KOG0117 Heterogeneous nuclear ribonucleoprotein R... 55 1e-07
Hs20357572 [A] KOG0117 Heterogeneous nuclear ribonucleoprotein R... 55 1e-07
CE16307 [A] KOG0108 mRNA cleavage and polyadenylation factor I c... 55 1e-07
7290149 [R] KOG0118 FOG: RRM domain 55 1e-07
7290050 [A] KOG0145 RNA-binding protein ELAV/HU (RRM superfamily) 55 1e-07
At5g58790_2 [R] KOG0126 Predicted RNA-binding protein (RRM super... 55 1e-07
YIR005w [R] KOG0126 Predicted RNA-binding protein (RRM superfamily) 55 1e-07
7293214 [A] KOG0120 Splicing factor U2AF large subunit (RRM supe... 55 1e-07
Hs7706316 [R] KOG0126 Predicted RNA-binding protein (RRM superfa... 54 2e-07
Hs20545580 [R] KOG0126 Predicted RNA-binding protein (RRM superf... 54 2e-07
ECU08g0380 [A] KOG0108 mRNA cleavage and polyadenylation factor ... 54 2e-07
7300657 [A] KOG0117 Heterogeneous nuclear ribonucleoprotein R (R... 54 2e-07
CE24366 [A] KOG0124 Polypyrimidine tract-binding protein PUF60 (... 54 3e-07
CE24365 [A] KOG0124 Polypyrimidine tract-binding protein PUF60 (... 54 3e-07
At5g09880 [K] KOG0147 Transcriptional coactivator CAPER (RRM sup... 54 3e-07
CE29149 [A] KOG0120 Splicing factor U2AF large subunit (RRM supe... 53 5e-07
CE27339 [A] KOG0120 Splicing factor U2AF large subunit (RRM supe... 53 5e-07
CE02523 [R] KOG0126 Predicted RNA-binding protein (RRM superfamily) 52 6e-07
HsM5453806 [A] KOG0117 Heterogeneous nuclear ribonucleoprotein R... 52 8e-07
Hs7657506 [R] KOG4733 FOG: RRM domain 52 8e-07
At4g02430 [A] KOG0105 Alternative splicing factor ASF/SF2 (RRM s... 52 8e-07
YIL061c [A] KOG0113 U1 small nuclear ribonucleoprotein (RRM supe... 52 1e-06
Hs5031755 [A] KOG0117 Heterogeneous nuclear ribonucleoprotein R ... 52 1e-06
At5g54900 [R] KOG0118 FOG: RRM domain 52 1e-06
At4g27000 [R] KOG0118 FOG: RRM domain 52 1e-06
CE16308 [A] KOG0108 mRNA cleavage and polyadenylation factor I c... 51 1e-06
7291545 [A] KOG0120 Splicing factor U2AF large subunit (RRM supe... 51 1e-06
Hs9558733 [R] KOG0118 FOG: RRM domain 51 2e-06
7301090 [AJ] KOG0148 Apoptosis-promoting RNA-binding protein TIA... 51 2e-06
Hs4758262 [A] KOG0145 RNA-binding protein ELAV/HU (RRM superfamily) 50 2e-06
At5g51300 [A] KOG0119 Splicing factor 1/branch point binding pro... 50 2e-06
At2g37220 [R] KOG0118 FOG: RRM domain 50 2e-06
At1g54080 [R] KOG0118 FOG: RRM domain 50 2e-06
HsM14150225 [R] KOG4208 Nucleolar RNA-binding protein NIFK 50 3e-06
Hs8400724 [R] KOG4733 FOG: RRM domain 50 3e-06
Hs8400722 [R] KOG4733 FOG: RRM domain 50 3e-06
Hs8400720 [R] KOG4733 FOG: RRM domain 50 3e-06
Hs8400718 [R] KOG4733 FOG: RRM domain 50 3e-06
Hs4506447 [R] KOG4733 FOG: RRM domain 50 3e-06
Hs21314753 [R] KOG4208 Nucleolar RNA-binding protein NIFK 50 3e-06
Hs4503551 [A] KOG0145 RNA-binding protein ELAV/HU (RRM superfamily) 50 4e-06
CE27708 [AJ] KOG0148 Apoptosis-promoting RNA-binding protein TIA... 50 4e-06
CE25017 [A] KOG0117 Heterogeneous nuclear ribonucleoprotein R (R... 50 4e-06
7298629 [R] KOG0126 Predicted RNA-binding protein (RRM superfamily) 50 4e-06
Hs11386163 [A] KOG0145 RNA-binding protein ELAV/HU (RRM superfam... 49 5e-06
At1g11650 [R] KOG0118 FOG: RRM domain 49 5e-06
Hs4507499 [AJ] KOG0148 Apoptosis-promoting RNA-binding protein T... 49 7e-06
Hs11863161 [AJ] KOG0148 Apoptosis-promoting RNA-binding protein ... 49 7e-06
CE27709 [AJ] KOG0148 Apoptosis-promoting RNA-binding protein TIA... 49 7e-06
At3g14100 [R] KOG0118 FOG: RRM domain 49 7e-06
SPCC1827.05c [R] KOG4208 Nucleolar RNA-binding protein NIFK 49 9e-06
SPBC887.05c [R] KOG0126 Predicted RNA-binding protein (RRM super... 49 9e-06
SPAC140.02 [K] KOG4210 Nuclear localization sequence binding pro... 49 9e-06
Hs4507119 [A] KOG0113 U1 small nuclear ribonucleoprotein (RRM su... 49 9e-06
Hs22050771 [A] KOG0113 U1 small nuclear ribonucleoprotein (RRM s... 49 9e-06
At3g53460 [R] KOG0118 FOG: RRM domain 49 9e-06
>YGL044c [A] KOG0108 mRNA cleavage and polyadenylation factor I complex
subunit RNA15
Length = 296
Score = 247 bits (630), Expect = 1e-65
Identities = 135/279 (48%), Positives = 171/279 (60%), Gaps = 28/279 (10%)
Query: 6 PSRTVYLGSIPYDQTEQQILDLCQTIGPVTAMKMMFDPTTGKSKGYAFIEFKDLATSASA 65
PSR VYLGSIPYDQTE+QILDLC +GPV +KMMFDP TG+SKGYAFIEF+DL +SASA
Sbjct: 16 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASA 75
Query: 66 VRNLNGYTLGSRSLKCGYTTXXXXXXXXXXXXDE--------EENGNMVED--------- 108
VRNLNGY LGSR LKCGY++ + NGN +
Sbjct: 76 VRNLNGYQLGSRFLKCGYSSNSDISGVSQQQQQQYNNINGNNNNNGNNNNNSNGPDFQNS 135
Query: 109 -------VKFPWLPVGVDVNINMTTPAMCISSELGKLQKDQQMALLKVIQHFCKDDKETF 161
KFP LP G+DVNINMTTPAM ISSEL K K+ Q+ L+ Q + + E
Sbjct: 136 GNANFLSQKFPELPSGIDVNINMTTPAMMISSELAKKPKEVQLKFLQKFQEWTRAHPEDA 195
Query: 162 VALLEEAPQLSYAIAELLLSNGVCSVDQLTQLAMASKQRPEEQTDNTVEDGLD----EEK 217
V+LLE PQLS+ AELLL+NG+C VD L LA ++ +N+V + +D ++
Sbjct: 196 VSLLELCPQLSFVTAELLLTNGICKVDDLIPLASRPQEEASATNNNSVNEVVDPAVLNKQ 255
Query: 218 XXXXXXXXXXXXSDIAMLPQDEKMAVWELKQRAMKGEFG 256
S I++LP DE+MA+W+LKQ+A++GEFG
Sbjct: 256 KELLKQVLQLNDSQISILPDDERMAIWDLKQKALRGEFG 294
>SPAC644.16 [A] KOG0108 mRNA cleavage and polyadenylation factor I complex
subunit RNA15
Length = 422
Score = 89.7 bits (221), Expect = 4e-18
Identities = 39/81 (48%), Positives = 58/81 (71%)
Query: 5 NPSRTVYLGSIPYDQTEQQILDLCQTIGPVTAMKMMFDPTTGKSKGYAFIEFKDLATSAS 64
NPS VY+G+IPY+ E+Q++D+ + GPV + +++ DP +G+ KGY F E+ D AT+AS
Sbjct: 2 NPSCVVYVGNIPYEMAEEQVIDIFKQSGPVKSFQLVIDPESGQPKGYGFCEYHDPATAAS 61
Query: 65 AVRNLNGYTLGSRSLKCGYTT 85
AVRNLN Y G+R L+ + T
Sbjct: 62 AVRNLNNYDAGTRRLRVDFPT 82
>At1g71800 [A] KOG0108 mRNA cleavage and polyadenylation factor I complex
subunit RNA15
Length = 414
Score = 87.8 bits (216), Expect = 1e-17
Identities = 57/205 (27%), Positives = 93/205 (44%), Gaps = 16/205 (7%)
Query: 8 RTVYLGSIPYDQTEQQILDLCQTIGPVTAMKMMFDPTTGKSKGYAFIEFKDLATSASAVR 67
R V++G+IPYD TE+Q+ ++C +GPV + +++ D TGK KGY F E+KD T+ SA R
Sbjct: 9 RCVFVGNIPYDATEEQLREICGEVGPVVSFRLVTDRETGKPKGYGFCEYKDEETALSARR 68
Query: 68 NLNGYTLGSRSLKCGYTTXXXXXXXXXXXXDEEENGNMVEDVKFPWLPVGVDVNINMTTP 127
NL Y + R L+ + + G+ N+ P
Sbjct: 69 NLQSYEINGRQLRVDFAENDKGTDKTPGALGGPQVGSQF-------------TQSNLQVP 115
Query: 128 AM-CISSELGKLQKDQQMALLKVIQHFCKDDKETFVALLEEAPQLSYAIAELLLSNGVCS 186
A ++ L K+ + Q ++ I+ +KE LL PQL A+ + G+ S
Sbjct: 116 ASDPLALHLAKMSRSQLTEIISSIKLMATQNKEHARQLLVSRPQLLKAVFLAQVMLGIVS 175
Query: 187 VDQLTQLAMASKQRPEEQTDNTVED 211
L + Q P T ++++D
Sbjct: 176 PQVLQSPNIV--QAPSHMTGSSIQD 198
>7300420 [A] KOG0108 mRNA cleavage and polyadenylation factor I complex
subunit RNA15
Length = 399
Score = 86.3 bits (212), Expect = 4e-17
Identities = 51/194 (26%), Positives = 95/194 (48%), Gaps = 12/194 (6%)
Query: 8 RTVYLGSIPYDQTEQQILDLCQTIGPVTAMKMMFDPTTGKSKGYAFIEFKDLATSASAVR 67
R+V++G+IPY+ TE+++ ++ +GPV ++K++FD +GK KG+ F E+KD T+ SA+R
Sbjct: 16 RSVFVGNIPYEATEEKLKEIFSEVGPVLSLKLVFDRESGKPKGFGFCEYKDQETALSAMR 75
Query: 68 NLNGYTLGSRSLKCGYTTXXXXXXXXXXXXDEEENGNMVEDVKFPWLPVGVDVNINMTTP 127
NLNGY +G R+L+ E+ M + ++ P +
Sbjct: 76 NLNGYEIGGRTLRVDNACT------------EKSRMEMQQLLQGPQVENPYGEPCEPEDA 123
Query: 128 AMCISSELGKLQKDQQMALLKVIQHFCKDDKETFVALLEEAPQLSYAIAELLLSNGVCSV 187
I+ + L +Q L+K ++ + +L PQL+YA+ + ++ +
Sbjct: 124 PELITKTVASLPPEQMYELMKQMKLCIVSNPSEARQMLMLNPQLAYALLQAMVVMRIVDP 183
Query: 188 DQLTQLAMASKQRP 201
Q + + Q P
Sbjct: 184 QQALGMLFKANQMP 197
>Hs4557493 [A] KOG0108 mRNA cleavage and polyadenylation factor I complex
subunit RNA15
Length = 577
Score = 84.3 bits (207), Expect = 2e-16
Identities = 50/170 (29%), Positives = 88/170 (51%), Gaps = 11/170 (6%)
Query: 8 RTVYLGSIPYDQTEQQILDLCQTIGPVTAMKMMFDPTTGKSKGYAFIEFKDLATSASAVR 67
R+V++G+IPY+ TE+Q+ D+ +GPV + ++++D TGK KGY F E++D T+ SA+R
Sbjct: 16 RSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR 75
Query: 68 NLNGYTLGSRSLKCGYTTXXXXXXXXXXXXDEEENGNMVEDVKFPWLPVGVDVNINMTTP 127
NLNG R+L+ ++EE ++ P G I+
Sbjct: 76 NLNGREFSGRALR---------VDNAASEKNKEELKSLGTGAPVIESPYG--ETISPEDA 124
Query: 128 AMCISSELGKLQKDQQMALLKVIQHFCKDDKETFVALLEEAPQLSYAIAE 177
IS + L +Q L+K ++ ++ + +L + PQL+YA+ +
Sbjct: 125 PESISKAVASLPPEQMFELMKQMKLCVQNSPQEARNMLLQNPQLAYALLQ 174
>CE16126 [A] KOG0108 mRNA cleavage and polyadenylation factor I complex
subunit RNA15
Length = 336
Score = 83.2 bits (204), Expect = 3e-16
Identities = 58/197 (29%), Positives = 89/197 (44%), Gaps = 20/197 (10%)
Query: 8 RTVYLGSIPYDQTEQQILDLCQTIGPVTAMKMMFDPTTGKSKGYAFIEFKDLATSASAVR 67
R+V++G+I YD +E I + G V ++KM+ D TGK KGY FIEF D+ T+ A+R
Sbjct: 18 RSVFVGNISYDVSEDTIRSIFSKAGNVLSIKMVHDRETGKPKGYGFIEFPDIQTAEVAIR 77
Query: 68 NLNGYTLGSRSLK----CGYTTXXXXXXXXXXXXDEEENGNMVEDVKFPWLPVGVDVNIN 123
NLNGY L R L+ G EEN P G + +
Sbjct: 78 NLNGYELSGRILRVDSAAGGMNMEEFGSSSNAPAPVEEN------------PYGPECDAG 125
Query: 124 MTTPAMCISSELGKLQKDQQMALLKVIQHFCKDDKETFVALLEEAPQLSYAIAELLLSNG 183
IS + L ++ L+K +Q K++ L E PQ++YA+ + +
Sbjct: 126 KAPER--ISQTVASLAPEKMFELMKQLQESLKNNPSELHKFLVEHPQIAYAVLQAAVVMR 183
Query: 184 VCSVDQLTQLAMASKQR 200
+ VD T L + + +
Sbjct: 184 I--VDPQTALGLLHRNK 198
>Hs14149675 [A] KOG0108 mRNA cleavage and polyadenylation factor I complex
subunit RNA15
Length = 616
Score = 79.0 bits (193), Expect = 6e-15
Identities = 47/170 (27%), Positives = 88/170 (51%), Gaps = 11/170 (6%)
Query: 8 RTVYLGSIPYDQTEQQILDLCQTIGPVTAMKMMFDPTTGKSKGYAFIEFKDLATSASAVR 67
R+V++G+IPY+ TE+Q+ D+ +G V + ++++D TGK KGY F E++D T+ SA+R
Sbjct: 16 RSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR 75
Query: 68 NLNGYTLGSRSLKCGYTTXXXXXXXXXXXXDEEENGNMVEDVKFPWLPVGVDVNINMTTP 127
NLNG R+L+ ++EE ++ P G ++
Sbjct: 76 NLNGREFSGRALR---------VDNAASEKNKEELKSLGPAAPIIDSPYGDPIDPEDAPE 126
Query: 128 AMCISSELGKLQKDQQMALLKVIQHFCKDDKETFVALLEEAPQLSYAIAE 177
+ I+ + L +Q L+K ++ ++ + +L + PQL+YA+ +
Sbjct: 127 S--ITRAVASLPPEQMFELMKQMKLCVQNSHQEARNMLLQNPQLAYALLQ 174
>SPBC3B9.11c [A] KOG0108 mRNA cleavage and polyadenylation factor I complex
subunit RNA15
Length = 363
Score = 76.6 bits (187), Expect = 3e-14
Identities = 37/80 (46%), Positives = 50/80 (62%), Gaps = 3/80 (3%)
Query: 1 MNRGNPSRTVYLGSIPYDQTEQQILDLCQTIGPVTAMKMMFDPTTGKSKGYAFIEFKDLA 60
M GN V++G+IPYD +EQQ+ ++ +GPV K++ DP TG KGY F EF D
Sbjct: 3 MTAGN---VVFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEFFDSE 59
Query: 61 TSASAVRNLNGYTLGSRSLK 80
T+A AVR LN LG R ++
Sbjct: 60 TTAMAVRKLNNSELGPRKIR 79
>Hs4757926 [K] KOG0147 Transcriptional coactivator CAPER (RRM superfamily)
Length = 524
Score = 66.2 bits (160), Expect = 4e-11
Identities = 29/92 (31%), Positives = 49/92 (52%)
Query: 10 VYLGSIPYDQTEQQILDLCQTIGPVTAMKMMFDPTTGKSKGYAFIEFKDLATSASAVRNL 69
+Y+GS+ ++ TE + + + G + ++++M D TG+SKGY FI F D + A+ L
Sbjct: 252 LYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQL 311
Query: 70 NGYTLGSRSLKCGYTTXXXXXXXXXXXXDEEE 101
NG+ L R +K G+ T D +E
Sbjct: 312 NGFELAGRPMKVGHVTERTDASSASSFLDSDE 343
>CE18119 [A] KOG0108 mRNA cleavage and polyadenylation factor I complex
subunit RNA15
Length = 84
Score = 63.9 bits (154), Expect = 2e-10
Identities = 27/75 (36%), Positives = 48/75 (64%)
Query: 9 TVYLGSIPYDQTEQQILDLCQTIGPVTAMKMMFDPTTGKSKGYAFIEFKDLATSASAVRN 68
+VY+G++PY TE++I + +G V +++++D TG+ +G+AF+EF + A + AV
Sbjct: 7 SVYVGNVPYQGTEEEIGNYFAAVGHVNNVRIVYDRETGRPRGFAFVEFSEEAGAQRAVEQ 66
Query: 69 LNGYTLGSRSLKCGY 83
LNG R+L+ Y
Sbjct: 67 LNGVAFNGRNLRVNY 81
>SPAC328.05 [R] KOG0118 FOG: RRM domain
Length = 434
Score = 61.6 bits (148), Expect = 1e-09
Identities = 28/80 (35%), Positives = 51/80 (63%), Gaps = 1/80 (1%)
Query: 4 GNPSRTVYLGSIPYDQTEQQILDLCQTIGPVTAMKMMFDPTTGKSKGYAFIEFKDLATSA 63
G S +Y+G++P+ +++ +LDL IG V ++ ++PT G+SKG+ ++F++ +A
Sbjct: 276 GPCSDCIYVGNLPWATSDRNLLDLFTDIGSVIRARIAYEPT-GRSKGFGVVQFENENDAA 334
Query: 64 SAVRNLNGYTLGSRSLKCGY 83
S++ LNGY G R L+ Y
Sbjct: 335 SSIEKLNGYRYGGRPLQLSY 354
>At3g52660 [A] KOG0117 Heterogeneous nuclear ribonucleoprotein R (RRM
superfamily)
Length = 471
Score = 61.2 bits (147), Expect = 1e-09
Identities = 29/75 (38%), Positives = 42/75 (55%)
Query: 10 VYLGSIPYDQTEQQILDLCQTIGPVTAMKMMFDPTTGKSKGYAFIEFKDLATSASAVRNL 69
VYLG IP D TE + C +IG VT +++M + +G KGYAF+ F+ +A A+ L
Sbjct: 94 VYLGGIPTDATEGDLKGFCGSIGEVTEVRIMREKDSGDGKGYAFVTFRSKDLAAEAIDTL 153
Query: 70 NGYTLGSRSLKCGYT 84
N + +KC T
Sbjct: 154 NNTDFRGKRIKCSTT 168
>HsM8922450 [K] KOG0147 Transcriptional coactivator CAPER (RRM superfamily)
Length = 406
Score = 60.5 bits (145), Expect = 2e-09
Identities = 29/82 (35%), Positives = 47/82 (56%), Gaps = 1/82 (1%)
Query: 4 GNPSRTVYLGSIPYDQTEQQILDLCQTIGPVTAMKMMFDPTTGKSKGYAFIEFKDLATSA 63
G P R +Y+GS+ ++ TE + + + G + + +M D TG+SKGY FI F D +
Sbjct: 226 GGPMR-LYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECAR 284
Query: 64 SAVRNLNGYTLGSRSLKCGYTT 85
A+ LNG+ L R ++ G+ T
Sbjct: 285 RALEQLNGFELAGRPMRVGHVT 306
>Hs21361702 [K] KOG0147 Transcriptional coactivator CAPER (RRM superfamily)
Length = 424
Score = 60.5 bits (145), Expect = 2e-09
Identities = 29/82 (35%), Positives = 47/82 (56%), Gaps = 1/82 (1%)
Query: 4 GNPSRTVYLGSIPYDQTEQQILDLCQTIGPVTAMKMMFDPTTGKSKGYAFIEFKDLATSA 63
G P R +Y+GS+ ++ TE + + + G + + +M D TG+SKGY FI F D +
Sbjct: 244 GGPMR-LYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECAR 302
Query: 64 SAVRNLNGYTLGSRSLKCGYTT 85
A+ LNG+ L R ++ G+ T
Sbjct: 303 RALEQLNGFELAGRPMRVGHVT 324
>At3g47120 [R] KOG0126 Predicted RNA-binding protein (RRM superfamily)
Length = 352
Score = 59.7 bits (143), Expect = 4e-09
Identities = 31/79 (39%), Positives = 48/79 (60%), Gaps = 3/79 (3%)
Query: 7 SRTVYLGSIPYDQTEQQILDLCQTIGPVTAMKMMFDPTTGKSKGYAFIEFKDLATSASAV 66
S VY+G IP+D TE +L + G + + ++ D TGKSKG+AF+ ++D ++ AV
Sbjct: 35 SAYVYVGGIPFDLTEGDLLAVFSQYGEIVDVNLIRDKGTGKSKGFAFLAYEDQRSTILAV 94
Query: 67 RNLNGYTLGSRSLK---CG 82
NLNG + R++K CG
Sbjct: 95 DNLNGALVLGRTIKVDHCG 113
>7297213 [K] KOG0147 Transcriptional coactivator CAPER (RRM superfamily)
Length = 594
Score = 58.9 bits (141), Expect = 7e-09
Identities = 27/90 (30%), Positives = 47/90 (52%)
Query: 10 VYLGSIPYDQTEQQILDLCQTIGPVTAMKMMFDPTTGKSKGYAFIEFKDLATSASAVRNL 69
+Y+GS+ ++ TE + + + G + A++++ D TG+SKGY FI + + + A+ L
Sbjct: 337 LYVGSLHFNITEDMLRGIFEPFGKIDAIQLIMDTETGRSKGYGFITYHNADDAKKALEQL 396
Query: 70 NGYTLGSRSLKCGYTTXXXXXXXXXXXXDE 99
NG+ L R +K G T DE
Sbjct: 397 NGFELAGRLMKVGNVTERLDMNTTSLDTDE 426
>Hs6005926 [A] KOG0120 Splicing factor U2AF large subunit (RRM superfamily)
Length = 475
Score = 57.0 bits (136), Expect = 3e-08
Identities = 25/70 (35%), Positives = 41/70 (57%)
Query: 10 VYLGSIPYDQTEQQILDLCQTIGPVTAMKMMFDPTTGKSKGYAFIEFKDLATSASAVRNL 69
+++G +P + Q+ +L + GP+ A ++ D TG SKGYAF E+ D+ + A+ L
Sbjct: 261 LFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGL 320
Query: 70 NGYTLGSRSL 79
NG LG + L
Sbjct: 321 NGMQLGDKKL 330
>At1g60900 [A] KOG0120 Splicing factor U2AF large subunit (RRM superfamily)
Length = 568
Score = 57.0 bits (136), Expect = 3e-08
Identities = 26/70 (37%), Positives = 43/70 (61%)
Query: 10 VYLGSIPYDQTEQQILDLCQTIGPVTAMKMMFDPTTGKSKGYAFIEFKDLATSASAVRNL 69
+++G +PY TE QI +L ++ GP+ ++ D TG SKGYAF ++D + + A L
Sbjct: 356 IFVGGLPYYFTEVQIRELLESFGPLRGFNLVKDRETGNSKGYAFCVYQDPSVTDIACAAL 415
Query: 70 NGYTLGSRSL 79
NG +G ++L
Sbjct: 416 NGIKMGDKTL 425
>7290796 [R] KOG0118 FOG: RRM domain
Length = 334
Score = 57.0 bits (136), Expect = 3e-08
Identities = 30/84 (35%), Positives = 48/84 (56%), Gaps = 1/84 (1%)
Query: 1 MNRGNPSRT-VYLGSIPYDQTEQQILDLCQTIGPVTAMKMMFDPTTGKSKGYAFIEFKDL 59
MN S T + + +P D T++++ L + IGP+ ++M D TG S GYAF++F
Sbjct: 77 MNDPRASNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSFGYAFVDFTSE 136
Query: 60 ATSASAVRNLNGYTLGSRSLKCGY 83
S A++ LNG T+ ++ LK Y
Sbjct: 137 MDSQRAIKVLNGITVRNKRLKVSY 160
>Hs17978512 [A] KOG0124 Polypyrimidine tract-binding protein PUF60 (RRM
superfamily)
Length = 559
Score = 56.2 bits (134), Expect = 4e-08
Identities = 25/73 (34%), Positives = 43/73 (58%)
Query: 10 VYLGSIPYDQTEQQILDLCQTIGPVTAMKMMFDPTTGKSKGYAFIEFKDLATSASAVRNL 69
+Y+ S+ D ++ I + + G + + + DPTTGK KGY FIE++ +S AV ++
Sbjct: 228 IYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSM 287
Query: 70 NGYTLGSRSLKCG 82
N + LG + L+ G
Sbjct: 288 NLFDLGGQYLRVG 300
Score = 53.5 bits (127), Expect = 3e-07
Identities = 26/73 (35%), Positives = 41/73 (55%)
Query: 10 VYLGSIPYDQTEQQILDLCQTIGPVTAMKMMFDPTTGKSKGYAFIEFKDLATSASAVRNL 69
VY+GSI Y+ E I GP+ ++ M +D T K KG+AF+E++ + A+ +
Sbjct: 131 VYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQM 190
Query: 70 NGYTLGSRSLKCG 82
N LG R++K G
Sbjct: 191 NSVMLGGRNIKVG 203
>Hs17298690 [A] KOG0124 Polypyrimidine tract-binding protein PUF60 (RRM
superfamily)
Length = 542
Score = 56.2 bits (134), Expect = 4e-08
Identities = 25/73 (34%), Positives = 43/73 (58%)
Query: 10 VYLGSIPYDQTEQQILDLCQTIGPVTAMKMMFDPTTGKSKGYAFIEFKDLATSASAVRNL 69
+Y+ S+ D ++ I + + G + + + DPTTGK KGY FIE++ +S AV ++
Sbjct: 211 IYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSM 270
Query: 70 NGYTLGSRSLKCG 82
N + LG + L+ G
Sbjct: 271 NLFDLGGQYLRVG 283
Score = 53.5 bits (127), Expect = 3e-07
Identities = 26/73 (35%), Positives = 41/73 (55%)
Query: 10 VYLGSIPYDQTEQQILDLCQTIGPVTAMKMMFDPTTGKSKGYAFIEFKDLATSASAVRNL 69
VY+GSI Y+ E I GP+ ++ M +D T K KG+AF+E++ + A+ +
Sbjct: 114 VYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQM 173
Query: 70 NGYTLGSRSLKCG 82
N LG R++K G
Sbjct: 174 NSVMLGGRNIKVG 186
>At4g36690 [A] KOG0120 Splicing factor U2AF large subunit (RRM superfamily)
Length = 573
Score = 56.2 bits (134), Expect = 4e-08
Identities = 25/70 (35%), Positives = 43/70 (60%)
Query: 10 VYLGSIPYDQTEQQILDLCQTIGPVTAMKMMFDPTTGKSKGYAFIEFKDLATSASAVRNL 69
+++G +PY TE Q+ +L ++ G + ++ D TG SKGYAF ++DL+ + A L
Sbjct: 361 IFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAAL 420
Query: 70 NGYTLGSRSL 79
NG +G ++L
Sbjct: 421 NGIKMGDKTL 430
>7292088 [A] KOG0124 Polypyrimidine tract-binding protein PUF60 (RRM
superfamily)
Length = 637
Score = 55.8 bits (133), Expect = 6e-08
Identities = 26/73 (35%), Positives = 43/73 (58%)
Query: 10 VYLGSIPYDQTEQQILDLCQTIGPVTAMKMMFDPTTGKSKGYAFIEFKDLATSASAVRNL 69
VY+GSI ++ E I GP+ ++ M +DP T K KG+AF+E++ + A+ +
Sbjct: 132 VYVGSISFELKEDTIRVAFTPFGPIKSINMSWDPITQKHKGFAFVEYEIPEGAQLALEQM 191
Query: 70 NGYTLGSRSLKCG 82
NG +G R++K G
Sbjct: 192 NGALMGGRNIKVG 204
>Hs20357578 [A] KOG0117 Heterogeneous nuclear ribonucleoprotein R (RRM
superfamily)
Length = 594
Score = 55.1 bits (131), Expect = 1e-07
Identities = 22/65 (33%), Positives = 41/65 (62%), Gaps = 1/65 (1%)
Query: 10 VYLGSIPYDQTEQQILDLCQTIGPVTAMKMMFDPTTGKSKGYAFIEFKDLATSASAVRNL 69
+++G +P D E +++ LC+ IG + M+MM D G ++GYAF+ F + + +A++ L
Sbjct: 66 IFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMD-FNGNNRGYAFVTFSNKVEAKNAIKQL 124
Query: 70 NGYTL 74
N Y +
Sbjct: 125 NNYEI 129
>Hs20357575 [A] KOG0117 Heterogeneous nuclear ribonucleoprotein R (RRM
superfamily)
Length = 594
Score = 55.1 bits (131), Expect = 1e-07
Identities = 22/65 (33%), Positives = 41/65 (62%), Gaps = 1/65 (1%)
Query: 10 VYLGSIPYDQTEQQILDLCQTIGPVTAMKMMFDPTTGKSKGYAFIEFKDLATSASAVRNL 69
+++G +P D E +++ LC+ IG + M+MM D G ++GYAF+ F + + +A++ L
Sbjct: 58 IFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMD-FNGNNRGYAFVTFSNKVEAKNAIKQL 116
Query: 70 NGYTL 74
N Y +
Sbjct: 117 NNYEI 121
>Hs20357572 [A] KOG0117 Heterogeneous nuclear ribonucleoprotein R (RRM
superfamily)
Length = 586
Score = 55.1 bits (131), Expect = 1e-07
Identities = 22/65 (33%), Positives = 41/65 (62%), Gaps = 1/65 (1%)
Query: 10 VYLGSIPYDQTEQQILDLCQTIGPVTAMKMMFDPTTGKSKGYAFIEFKDLATSASAVRNL 69
+++G +P D E +++ LC+ IG + M+MM D G ++GYAF+ F + + +A++ L
Sbjct: 58 IFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMD-FNGNNRGYAFVTFSNKVEAKNAIKQL 116
Query: 70 NGYTL 74
N Y +
Sbjct: 117 NNYEI 121
>CE16307 [A] KOG0108 mRNA cleavage and polyadenylation factor I complex
subunit RNA15
Length = 83
Score = 55.1 bits (131), Expect = 1e-07
Identities = 23/72 (31%), Positives = 45/72 (61%)
Query: 9 TVYLGSIPYDQTEQQILDLCQTIGPVTAMKMMFDPTTGKSKGYAFIEFKDLATSASAVRN 68
+VY+G+ P+ TE+++ + +IG + ++++ D TG+ +G+AFIEF + ++ AV
Sbjct: 6 SVYVGNAPFQTTEEELGNFFSSIGQINNVRIVCDRETGRPRGFAFIEFAEEGSAQRAVEQ 65
Query: 69 LNGYTLGSRSLK 80
+NG R L+
Sbjct: 66 MNGAEFNGRPLR 77
>7290149 [R] KOG0118 FOG: RRM domain
Length = 485
Score = 55.1 bits (131), Expect = 1e-07
Identities = 24/69 (34%), Positives = 42/69 (60%)
Query: 15 IPYDQTEQQILDLCQTIGPVTAMKMMFDPTTGKSKGYAFIEFKDLATSASAVRNLNGYTL 74
+P D T++++ +L GP+ K+M D TG S GY F+++K + S A++ LNG+ +
Sbjct: 100 LPQDMTDRELYNLFSGCGPINTCKIMRDFKTGYSFGYGFVDYKTESDSEDAIQKLNGFYV 159
Query: 75 GSRSLKCGY 83
++ LK Y
Sbjct: 160 RNKRLKVSY 168
>7290050 [A] KOG0145 RNA-binding protein ELAV/HU (RRM superfamily)
Length = 479
Score = 55.1 bits (131), Expect = 1e-07
Identities = 25/76 (32%), Positives = 45/76 (58%)
Query: 10 VYLGSIPYDQTEQQILDLCQTIGPVTAMKMMFDPTTGKSKGYAFIEFKDLATSASAVRNL 69
+++ ++ + E + L G V ++K++ DPTT + KGY F+ + +A A+R L
Sbjct: 400 IFIYNLAPETEEAALWQLFGPFGAVQSVKIVKDPTTNQCKGYGFVSMTNYDEAAMAIRAL 459
Query: 70 NGYTLGSRSLKCGYTT 85
NGYT+G+R L+ + T
Sbjct: 460 NGYTMGNRVLQVSFKT 475
>At5g58790_2 [R] KOG0126 Predicted RNA-binding protein (RRM superfamily)
Length = 161
Score = 55.1 bits (131), Expect = 1e-07
Identities = 29/79 (36%), Positives = 46/79 (57%), Gaps = 3/79 (3%)
Query: 7 SRTVYLGSIPYDQTEQQILDLCQTIGPVTAMKMMFDPTTGKSKGYAFIEFKDLATSASAV 66
S VY+G +PYD TE +L + G V + ++ D TG+SK +AF+ ++D ++ AV
Sbjct: 29 SAYVYVGELPYDLTEGDLLAVFSQYGEVVDLNLVRDKGTGRSKRFAFVAYEDQRSTNLAV 88
Query: 67 RNLNGYTLGSRSLK---CG 82
N+NG + R +K CG
Sbjct: 89 DNINGAKVLGRIIKVEHCG 107
>YIR005w [R] KOG0126 Predicted RNA-binding protein (RRM superfamily)
Length = 148
Score = 54.7 bits (130), Expect = 1e-07
Identities = 25/75 (33%), Positives = 47/75 (62%)
Query: 10 VYLGSIPYDQTEQQILDLCQTIGPVTAMKMMFDPTTGKSKGYAFIEFKDLATSASAVRNL 69
+Y+G++ + TE IL + G + + D TG+S+G+A+++++D ++ AV NL
Sbjct: 33 IYIGNLNRELTEGDILTVFSEYGVPVDVILSRDENTGESQGFAYLKYEDQRSTILAVDNL 92
Query: 70 NGYTLGSRSLKCGYT 84
NG+ +G R+LK +T
Sbjct: 93 NGFKIGGRALKIDHT 107
>7293214 [A] KOG0120 Splicing factor U2AF large subunit (RRM superfamily)
Length = 416
Score = 54.7 bits (130), Expect = 1e-07
Identities = 24/70 (34%), Positives = 41/70 (58%)
Query: 10 VYLGSIPYDQTEQQILDLCQTIGPVTAMKMMFDPTTGKSKGYAFIEFKDLATSASAVRNL 69
+++G +P + Q+ +L + G + A ++ D TG SKGYAF E+ DL+ + ++ L
Sbjct: 209 IFIGGLPNYLNDDQVKELLLSFGKLRAFNLVKDAATGLSKGYAFCEYVDLSITDQSIAGL 268
Query: 70 NGYTLGSRSL 79
NG LG + L
Sbjct: 269 NGMQLGDKKL 278
>Hs7706316 [R] KOG0126 Predicted RNA-binding protein (RRM superfamily)
Length = 351
Score = 54.3 bits (129), Expect = 2e-07
Identities = 24/79 (30%), Positives = 46/79 (57%)
Query: 7 SRTVYLGSIPYDQTEQQILDLCQTIGPVTAMKMMFDPTTGKSKGYAFIEFKDLATSASAV 66
S ++LG +PY+ TE I+ + G + + ++ D TGKSKG+ F+ ++D ++ AV
Sbjct: 35 SAWIFLGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTILAV 94
Query: 67 RNLNGYTLGSRSLKCGYTT 85
N NG + R+++ + +
Sbjct: 95 DNFNGIKIKGRTIRVDHVS 113
>Hs20545580 [R] KOG0126 Predicted RNA-binding protein (RRM superfamily)
Length = 272
Score = 54.3 bits (129), Expect = 2e-07
Identities = 24/79 (30%), Positives = 46/79 (57%)
Query: 7 SRTVYLGSIPYDQTEQQILDLCQTIGPVTAMKMMFDPTTGKSKGYAFIEFKDLATSASAV 66
S ++LG +PY+ TE I+ + G + + ++ D TGKSKG+ F+ ++D ++ AV
Sbjct: 35 SAWIFLGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTILAV 94
Query: 67 RNLNGYTLGSRSLKCGYTT 85
N NG + R+++ + +
Sbjct: 95 DNFNGIKIKGRTIRVDHVS 113
>ECU08g0380 [A] KOG0108 mRNA cleavage and polyadenylation factor I complex
subunit RNA15
Length = 214
Score = 54.3 bits (129), Expect = 2e-07
Identities = 47/244 (19%), Positives = 94/244 (38%), Gaps = 40/244 (16%)
Query: 9 TVYLGSIPYDQTEQQILDLCQTIGPVTAMKMMFDPTTGKSKGYAFIEFKDLATSASAVRN 68
++++G+I ++ E++I++ +G V + +M++D TTGKS+G+ F E++ A++N
Sbjct: 6 SIFVGNIDFEVPEERIIEELGAVGKVVSFRMVYDKTTGKSRGFGFCEYESPLIVEKALQN 65
Query: 69 LNGYTLGSRSLKCGYTTXXXXXXXXXXXXDEEENGNMVEDVKFPWLPVGVDVNINMTTPA 128
L + R +K Y E N++
Sbjct: 66 LK-ISFNGRPVKINYAENDMPAKAREPESQVPEIDNLI---------------------- 102
Query: 129 MCISSELGKLQKDQQMALLKVIQHFCKDDKETFVALLEEAPQLSYAIAELLLSNGVCSVD 188
+ L + KD +L ++ D LL + P L YAI +L
Sbjct: 103 ----NVLDNMDKDNLKEVLFYLRKLALDQPSYLRELLNKNPNLVYAIIHAML-------- 150
Query: 189 QLTQLAMASKQRPEEQTDNTVEDGLDEEKXXXXXXXXXXXXSDIAMLPQDEKMAVWELKQ 248
+L +A +E + + L ++K D+ P+D + V +++
Sbjct: 151 ---KLKLADPGVVDEILKESFD--LTKQKMQVLERICSISEDDLCFFPEDVRNKVKKVRS 205
Query: 249 RAMK 252
+K
Sbjct: 206 MVLK 209
>7300657 [A] KOG0117 Heterogeneous nuclear ribonucleoprotein R (RRM
superfamily)
Length = 673
Score = 53.9 bits (128), Expect = 2e-07
Identities = 51/213 (23%), Positives = 92/213 (42%), Gaps = 13/213 (6%)
Query: 10 VYLGSIPYDQTEQQILDLCQTIGPVTAMKMMFDPTTGKSKGYAFIEFKDLATSASAVRNL 69
V+ G IP D E +++ L + G + +++M DP TG ++GYAF+ F + + +AVR L
Sbjct: 166 VFCGKIPKDMYEDELIPLFENCGIIWDLRLMMDPMTGTNRGYAFVTFTNREAAVNAVRQL 225
Query: 70 NGYTL-GSRSLKCGYTTXXXXXXXXXXXXDEEENGNMVEDVKFPWLPVGVDVNINM---- 124
+ + + + LK + + ++ + E K +GV ++ N
Sbjct: 226 DNHEIKPGKCLKINISVPNLRLFVGNIPKSKGKDEILEEFGKLTGKKIGVTISFNNHRLF 285
Query: 125 --TTPAMCISSELGKLQKDQQMALLKVIQHFCKDDKE--TFVALLEEAPQLSYAIAELLL 180
P EL + L +VI + DDK+ LE + ++A+ L
Sbjct: 286 VGNIPKNRDRDELIEEFSKHAPGLYEVIIYSSPDDKKKNRGFCFLEYESHKAASLAKRRL 345
Query: 181 SNG---VCSVDQLTQLAMASKQRPEEQTDNTVE 210
G V D + A ++ P+EQT + V+
Sbjct: 346 GTGRIKVWGCDIIVDWA-DPQEEPDEQTMSKVK 377
>CE24366 [A] KOG0124 Polypyrimidine tract-binding protein PUF60 (RRM
superfamily)
Length = 749
Score = 53.5 bits (127), Expect = 3e-07
Identities = 24/71 (33%), Positives = 41/71 (56%)
Query: 10 VYLGSIPYDQTEQQILDLCQTIGPVTAMKMMFDPTTGKSKGYAFIEFKDLATSASAVRNL 69
+Y+GSI ++ E + GP+ ++ M +DP TG K +AF+E++ + A ++
Sbjct: 104 IYVGSISFEIREDMLRRAFDPFGPIKSINMSWDPATGHHKTFAFVEYEVPEAALLAQESM 163
Query: 70 NGYTLGSRSLK 80
NG LG R+LK
Sbjct: 164 NGQMLGGRNLK 174
>CE24365 [A] KOG0124 Polypyrimidine tract-binding protein PUF60 (RRM
superfamily)
Length = 339
Score = 53.5 bits (127), Expect = 3e-07
Identities = 24/71 (33%), Positives = 41/71 (56%)
Query: 10 VYLGSIPYDQTEQQILDLCQTIGPVTAMKMMFDPTTGKSKGYAFIEFKDLATSASAVRNL 69
+Y+GSI ++ E + GP+ ++ M +DP TG K +AF+E++ + A ++
Sbjct: 104 IYVGSISFEIREDMLRRAFDPFGPIKSINMSWDPATGHHKTFAFVEYEVPEAALLAQESM 163
Query: 70 NGYTLGSRSLK 80
NG LG R+LK
Sbjct: 164 NGQMLGGRNLK 174
>At5g09880 [K] KOG0147 Transcriptional coactivator CAPER (RRM superfamily)
Length = 604
Score = 53.5 bits (127), Expect = 3e-07
Identities = 26/78 (33%), Positives = 46/78 (58%), Gaps = 1/78 (1%)
Query: 4 GNPSRTVYLGSIPYDQTEQQILDLCQTIGPVTAMKMMFDPTTGKSKGYAFIEFKDLATSA 63
G R +Y+G++ ++ +E Q+ + + GPV +++ DP TG+ KG+ FI+F L S
Sbjct: 261 GPADRKLYVGNLHFNMSELQLRQIFEAFGPVELVQLPLDPETGQCKGFGFIQFVQLEHSK 320
Query: 64 SAVRNLNG-YTLGSRSLK 80
+A LNG + R++K
Sbjct: 321 AAQIALNGKLEIAGRTIK 338
>CE29149 [A] KOG0120 Splicing factor U2AF large subunit (RRM superfamily)
Length = 474
Score = 52.8 bits (125), Expect = 5e-07
Identities = 26/70 (37%), Positives = 40/70 (57%), Gaps = 1/70 (1%)
Query: 10 VYLGSIPYDQTEQQILDLCQTIGPVTAMKMMFDPTTGKSKGYAFIEFKDLATSASAVRNL 69
+++G +P TE Q+ +L + GP+ A + D + G SKGYAF E+ D + A+ L
Sbjct: 271 IFIGGLPNYLTEDQVKELLCSFGPLKAFSLNVD-SQGNSKGYAFAEYLDPTLTDQAIAGL 329
Query: 70 NGYTLGSRSL 79
NG LG + L
Sbjct: 330 NGMQLGDKQL 339
>CE27339 [A] KOG0120 Splicing factor U2AF large subunit (RRM superfamily)
Length = 496
Score = 52.8 bits (125), Expect = 5e-07
Identities = 26/70 (37%), Positives = 40/70 (57%), Gaps = 1/70 (1%)
Query: 10 VYLGSIPYDQTEQQILDLCQTIGPVTAMKMMFDPTTGKSKGYAFIEFKDLATSASAVRNL 69
+++G +P TE Q+ +L + GP+ A + D + G SKGYAF E+ D + A+ L
Sbjct: 293 IFIGGLPNYLTEDQVKELLCSFGPLKAFSLNVD-SQGNSKGYAFAEYLDPTLTDQAIAGL 351
Query: 70 NGYTLGSRSL 79
NG LG + L
Sbjct: 352 NGMQLGDKQL 361
>CE02523 [R] KOG0126 Predicted RNA-binding protein (RRM superfamily)
Length = 302
Score = 52.4 bits (124), Expect = 6e-07
Identities = 25/74 (33%), Positives = 43/74 (57%)
Query: 7 SRTVYLGSIPYDQTEQQILDLCQTIGPVTAMKMMFDPTTGKSKGYAFIEFKDLATSASAV 66
S +Y+G + Y +E ++ + G V + ++ D TGKSKG+AF+ +KD ++ AV
Sbjct: 37 SAWIYIGGLSYALSEGDVIAVFSQYGEVMNINLIRDKDTGKSKGFAFLCYKDQRSTILAV 96
Query: 67 RNLNGYTLGSRSLK 80
N NG +L R ++
Sbjct: 97 DNFNGISLHKRMIR 110
>HsM5453806 [A] KOG0117 Heterogeneous nuclear ribonucleoprotein R (RRM
superfamily)
Length = 562
Score = 52.0 bits (123), Expect = 8e-07
Identities = 22/67 (32%), Positives = 40/67 (58%)
Query: 10 VYLGSIPYDQTEQQILDLCQTIGPVTAMKMMFDPTTGKSKGYAFIEFKDLATSASAVRNL 69
+++G IP D E +++ L + GP+ +++M DP TG ++GYAF+ F + AV+
Sbjct: 164 IFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKLY 223
Query: 70 NGYTLGS 76
N + + S
Sbjct: 224 NNHEIRS 230
>Hs7657506 [R] KOG4733 FOG: RRM domain
Length = 411
Score = 52.0 bits (123), Expect = 8e-07
Identities = 36/145 (24%), Positives = 63/145 (42%), Gaps = 8/145 (5%)
Query: 10 VYLGSIPYDQTEQQILDLCQTIGPVTAMKMMFDPTTGKSKGYAFIEFKDLATSASAVRNL 69
+Y+ +P T+Q ++ LCQ G + + K + D T + KGY F++F A + AV +L
Sbjct: 54 LYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDFDSPAAAQKAVASL 113
Query: 70 NGYTLGSRSLK-CGYTTXXXXXXXXXXXXDEEENGNMVEDVKFPWLPVGVDVNINMTTPA 128
+ ++ K DE+E NM++ P G ++ + A
Sbjct: 114 KANGVQAQMAKQQEQDPTNLYISNLPISMDEQELENMLK-------PFGHVISTRILRDA 166
Query: 129 MCISSELGKLQKDQQMALLKVIQHF 153
+S +G + + VIQHF
Sbjct: 167 NGVSRGVGFARMESTEKCEVVIQHF 191
>At4g02430 [A] KOG0105 Alternative splicing factor ASF/SF2 (RRM superfamily)
Length = 294
Score = 52.0 bits (123), Expect = 8e-07
Identities = 25/74 (33%), Positives = 41/74 (54%), Gaps = 3/74 (4%)
Query: 7 SRTVYLGSIPYDQTEQQILDLCQTIGPVTAMKMMFDPTTGKSKGYAFIEFKDLATSASAV 66
SRT+Y+G++P D E+++ DL GPV + + P + GYAF+EF+D + A+
Sbjct: 6 SRTIYVGNLPGDIREREVEDLFSKYGPVVQIDLKIPP---RPPGYAFVEFEDARDADDAI 62
Query: 67 RNLNGYTLGSRSLK 80
+GY L+
Sbjct: 63 YGRDGYDFDGHHLR 76
>YIL061c [A] KOG0113 U1 small nuclear ribonucleoprotein (RRM superfamily)
Length = 300
Score = 51.6 bits (122), Expect = 1e-06
Identities = 24/65 (36%), Positives = 39/65 (59%)
Query: 5 NPSRTVYLGSIPYDQTEQQILDLCQTIGPVTAMKMMFDPTTGKSKGYAFIEFKDLATSAS 64
+P RT+++G +PYD E ++ G + ++++ D T KSKGYAFI FKD +S
Sbjct: 104 DPYRTIFIGRLPYDLDEIELQKYFVKFGEIEKIRIVKDKITQKSKGYAFIVFKDPISSKM 163
Query: 65 AVRNL 69
A + +
Sbjct: 164 AFKEI 168
>Hs5031755 [A] KOG0117 Heterogeneous nuclear ribonucleoprotein R (RRM
superfamily)
Length = 633
Score = 51.6 bits (122), Expect = 1e-06
Identities = 22/65 (33%), Positives = 40/65 (60%)
Query: 10 VYLGSIPYDQTEQQILDLCQTIGPVTAMKMMFDPTTGKSKGYAFIEFKDLATSASAVRNL 69
V++G IP D E +++ L + GP+ +++M DP +G+++GYAFI F + AV+
Sbjct: 167 VFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVKLC 226
Query: 70 NGYTL 74
+ Y +
Sbjct: 227 DSYEI 231
>At5g54900 [R] KOG0118 FOG: RRM domain
Length = 390
Score = 51.6 bits (122), Expect = 1e-06
Identities = 24/78 (30%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 6 PSRTVYLGSIPYDQTEQQILDLCQTI-GPVTAMKMMFDPTTGKSKGYAFIEFKDLATSAS 64
P T+++G + + T+ + D + + G V K++ D TTG+SKGY F+ F D
Sbjct: 152 PDHTIFVGDLAPEVTDYMLSDTFKNVYGSVKGAKVVLDRTTGRSKGYGFVRFADENEQMR 211
Query: 65 AVRNLNGYTLGSRSLKCG 82
A+ +NG +R ++ G
Sbjct: 212 AMTEMNGQYCSTRPMRIG 229
>At4g27000 [R] KOG0118 FOG: RRM domain
Length = 427
Score = 51.6 bits (122), Expect = 1e-06
Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 6 PSRTVYLGSIPYDQTEQQILDLCQTI-GPVTAMKMMFDPTTGKSKGYAFIEFKDLATSAS 64
P TV++G + D T+ + + + + V K++ D TTG+SKGY F+ F D +
Sbjct: 171 PEHTVFVGDLAPDVTDHMLTETFKAVYSSVKGAKVVNDRTTGRSKGYGFVRFADESEQIR 230
Query: 65 AVRNLNGYTLGSRSLKCG 82
A+ +NG SR ++ G
Sbjct: 231 AMTEMNGQYCSSRPMRTG 248
>CE16308 [A] KOG0108 mRNA cleavage and polyadenylation factor I complex
subunit RNA15
Length = 85
Score = 51.2 bits (121), Expect = 1e-06
Identities = 23/72 (31%), Positives = 42/72 (57%)
Query: 9 TVYLGSIPYDQTEQQILDLCQTIGPVTAMKMMFDPTTGKSKGYAFIEFKDLATSASAVRN 68
+VY+G+ P+ TE + + G V+ ++++ D TG+ +G+AF+EF + A + AV
Sbjct: 5 SVYVGNAPFQTTEDDLGNYFSQAGNVSNVRIVCDRETGRPRGFAFVEFTEEAAAQRAVDQ 64
Query: 69 LNGYTLGSRSLK 80
NG R+L+
Sbjct: 65 FNGVDFNGRALR 76
>7291545 [A] KOG0120 Splicing factor U2AF large subunit (RRM superfamily)
Length = 449
Score = 51.2 bits (121), Expect = 1e-06
Identities = 22/70 (31%), Positives = 40/70 (56%)
Query: 10 VYLGSIPYDQTEQQILDLCQTIGPVTAMKMMFDPTTGKSKGYAFIEFKDLATSASAVRNL 69
+Y+G +P + Q+ +L Q+ G + + ++ D T +KG+AF E+ D + + A+ L
Sbjct: 244 IYVGGLPTCLNQDQVKELLQSFGELKGLNLVMDTNTNLNKGFAFFEYCDPSVTDHAIAGL 303
Query: 70 NGYTLGSRSL 79
+G LG R L
Sbjct: 304 HGMLLGDRRL 313
>Hs9558733 [R] KOG0118 FOG: RRM domain
Length = 282
Score = 50.8 bits (120), Expect = 2e-06
Identities = 24/85 (28%), Positives = 46/85 (53%), Gaps = 2/85 (2%)
Query: 2 NRGNPSRTVYLG--SIPYDQTEQQILDLCQTIGPVTAMKMMFDPTTGKSKGYAFIEFKDL 59
+R NP LG + TE+ + ++ GP++ + +++D TG+S+G+AF+ F+ +
Sbjct: 111 SRANPDPNTCLGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERI 170
Query: 60 ATSASAVRNLNGYTLGSRSLKCGYT 84
S A+ NG L R ++ Y+
Sbjct: 171 DDSKEAMERANGMELDGRRIRVDYS 195
>7301090 [AJ] KOG0148 Apoptosis-promoting RNA-binding protein TIA-1/TIAR
(RRM superfamily)
Length = 464
Score = 50.8 bits (120), Expect = 2e-06
Identities = 22/76 (28%), Positives = 46/76 (59%)
Query: 10 VYLGSIPYDQTEQQILDLCQTIGPVTAMKMMFDPTTGKSKGYAFIEFKDLATSASAVRNL 69
+++G + + + + + G ++ +++ DP T KSKGYAF+ F A + +A++ +
Sbjct: 97 IFVGDLSPEIETETLREAFAPFGEISNCRIVRDPHTMKSKGYAFVSFVKKAEAENAIQAM 156
Query: 70 NGYTLGSRSLKCGYTT 85
NG +GSRS++ ++T
Sbjct: 157 NGQWIGSRSIRTNWST 172
>Hs4758262 [A] KOG0145 RNA-binding protein ELAV/HU (RRM superfamily)
Length = 359
Score = 50.4 bits (119), Expect = 2e-06
Identities = 22/82 (26%), Positives = 45/82 (54%)
Query: 2 NRGNPSRTVYLGSIPYDQTEQQILDLCQTIGPVTAMKMMFDPTTGKSKGYAFIEFKDLAT 61
N + + + +P + T++++ L +IG + + K++ D TG+S GY F+ + D
Sbjct: 33 NTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKD 92
Query: 62 SASAVRNLNGYTLGSRSLKCGY 83
+ A+ LNG L ++++K Y
Sbjct: 93 AEKAINTLNGLRLQTKTIKVSY 114
Score = 48.9 bits (115), Expect = 7e-06
Identities = 24/76 (31%), Positives = 42/76 (54%)
Query: 10 VYLGSIPYDQTEQQILDLCQTIGPVTAMKMMFDPTTGKSKGYAFIEFKDLATSASAVRNL 69
+++ ++ D E + + G VT +K++ D T K KG+ F+ + +A A+R+L
Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIRSL 337
Query: 70 NGYTLGSRSLKCGYTT 85
NGY LG R L+ + T
Sbjct: 338 NGYRLGDRVLQVSFKT 353
>At5g51300 [A] KOG0119 Splicing factor 1/branch point binding protein (RRM
superfamily)
Length = 804
Score = 50.4 bits (119), Expect = 2e-06
Identities = 22/70 (31%), Positives = 42/70 (59%)
Query: 10 VYLGSIPYDQTEQQILDLCQTIGPVTAMKMMFDPTTGKSKGYAFIEFKDLATSASAVRNL 69
+Y+G +P + +++L + G + K++ D TG SKGY F+++ D+ + +AV+ +
Sbjct: 482 LYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQMANTAVQAM 541
Query: 70 NGYTLGSRSL 79
NGY R+L
Sbjct: 542 NGYRFEGRTL 551
>At2g37220 [R] KOG0118 FOG: RRM domain
Length = 289
Score = 50.4 bits (119), Expect = 2e-06
Identities = 19/71 (26%), Positives = 43/71 (59%)
Query: 10 VYLGSIPYDQTEQQILDLCQTIGPVTAMKMMFDPTTGKSKGYAFIEFKDLATSASAVRNL 69
+++G++P++ Q+ L ++ G V +++++D TG+S+G+ F+ ++ +A +
Sbjct: 93 LFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQF 152
Query: 70 NGYTLGSRSLK 80
NGY L R L+
Sbjct: 153 NGYELDGRPLR 163
>At1g54080 [R] KOG0118 FOG: RRM domain
Length = 426
Score = 50.4 bits (119), Expect = 2e-06
Identities = 18/76 (23%), Positives = 43/76 (55%)
Query: 10 VYLGSIPYDQTEQQILDLCQTIGPVTAMKMMFDPTTGKSKGYAFIEFKDLATSASAVRNL 69
+++G + + T+ + D + ++M+D TG+S+G+ F+ F++ + +A+ +
Sbjct: 150 IFVGDLSPEVTDAALFDSFSAFNSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEM 209
Query: 70 NGYTLGSRSLKCGYTT 85
NG + SR ++C + T
Sbjct: 210 NGKWVSSRQIRCNWAT 225
>HsM14150225 [R] KOG4208 Nucleolar RNA-binding protein NIFK
Length = 293
Score = 50.1 bits (118), Expect = 3e-06
Identities = 25/74 (33%), Positives = 35/74 (46%)
Query: 10 VYLGSIPYDQTEQQILDLCQTIGPVTAMKMMFDPTTGKSKGYAFIEFKDLATSASAVRNL 69
VY+ +P E QI G VT ++ TG SKGYAF+EF+ + +
Sbjct: 47 VYVRHLPNLLDETQIFSYFSQFGTVTRFRLSRSKRTGNSKGYAFVEFESEDVAKIVAETM 106
Query: 70 NGYTLGSRSLKCGY 83
N Y G R L+C +
Sbjct: 107 NNYLFGERLLECHF 120
>Hs8400724 [R] KOG4733 FOG: RRM domain
Length = 389
Score = 50.1 bits (118), Expect = 3e-06
Identities = 22/60 (36%), Positives = 34/60 (56%)
Query: 10 VYLGSIPYDQTEQQILDLCQTIGPVTAMKMMFDPTTGKSKGYAFIEFKDLATSASAVRNL 69
+Y+ +P T+Q ++ LCQ G + + K + D TT K KGY F++F A + AV L
Sbjct: 31 LYIRGLPPHTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPAAAQKAVSAL 90
>Hs8400722 [R] KOG4733 FOG: RRM domain
Length = 373
Score = 50.1 bits (118), Expect = 3e-06
Identities = 22/60 (36%), Positives = 34/60 (56%)
Query: 10 VYLGSIPYDQTEQQILDLCQTIGPVTAMKMMFDPTTGKSKGYAFIEFKDLATSASAVRNL 69
+Y+ +P T+Q ++ LCQ G + + K + D TT K KGY F++F A + AV L
Sbjct: 31 LYIRGLPPHTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPAAAQKAVSAL 90
>Hs8400720 [R] KOG4733 FOG: RRM domain
Length = 419
Score = 50.1 bits (118), Expect = 3e-06
Identities = 22/60 (36%), Positives = 34/60 (56%)
Query: 10 VYLGSIPYDQTEQQILDLCQTIGPVTAMKMMFDPTTGKSKGYAFIEFKDLATSASAVRNL 69
+Y+ +P T+Q ++ LCQ G + + K + D TT K KGY F++F A + AV L
Sbjct: 64 LYIRGLPPHTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPAAAQKAVSAL 123
>Hs8400718 [R] KOG4733 FOG: RRM domain
Length = 406
Score = 50.1 bits (118), Expect = 3e-06
Identities = 22/60 (36%), Positives = 34/60 (56%)
Query: 10 VYLGSIPYDQTEQQILDLCQTIGPVTAMKMMFDPTTGKSKGYAFIEFKDLATSASAVRNL 69
+Y+ +P T+Q ++ LCQ G + + K + D TT K KGY F++F A + AV L
Sbjct: 64 LYIRGLPPHTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPAAAQKAVSAL 123
>Hs4506447 [R] KOG4733 FOG: RRM domain
Length = 403
Score = 50.1 bits (118), Expect = 3e-06
Identities = 22/60 (36%), Positives = 34/60 (56%)
Query: 10 VYLGSIPYDQTEQQILDLCQTIGPVTAMKMMFDPTTGKSKGYAFIEFKDLATSASAVRNL 69
+Y+ +P T+Q ++ LCQ G + + K + D TT K KGY F++F A + AV L
Sbjct: 64 LYIRGLPPHTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPAAAQKAVSAL 123
>Hs21314753 [R] KOG4208 Nucleolar RNA-binding protein NIFK
Length = 293
Score = 50.1 bits (118), Expect = 3e-06
Identities = 25/74 (33%), Positives = 35/74 (46%)
Query: 10 VYLGSIPYDQTEQQILDLCQTIGPVTAMKMMFDPTTGKSKGYAFIEFKDLATSASAVRNL 69
VY+ +P E QI G VT ++ TG SKGYAF+EF+ + +
Sbjct: 47 VYVRHLPNLLDETQIFSYFSQFGTVTRFRLSRSKRTGNSKGYAFVEFESEDVAKIVAETM 106
Query: 70 NGYTLGSRSLKCGY 83
N Y G R L+C +
Sbjct: 107 NNYLFGERLLECHF 120
>Hs4503551 [A] KOG0145 RNA-binding protein ELAV/HU (RRM superfamily)
Length = 326
Score = 49.7 bits (117), Expect = 4e-06
Identities = 25/82 (30%), Positives = 44/82 (53%), Gaps = 1/82 (1%)
Query: 3 RGNPSRT-VYLGSIPYDQTEQQILDLCQTIGPVTAMKMMFDPTTGKSKGYAFIEFKDLAT 61
RG+ RT + + +P + T+ ++ L +IG V + K++ D G S GY F+ +
Sbjct: 14 RGDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKD 73
Query: 62 SASAVRNLNGYTLGSRSLKCGY 83
+ A+ LNG L S+++K Y
Sbjct: 74 AERAINTLNGLRLQSKTIKVSY 95
>CE27708 [AJ] KOG0148 Apoptosis-promoting RNA-binding protein TIA-1/TIAR
(RRM superfamily)
Length = 408
Score = 49.7 bits (117), Expect = 4e-06
Identities = 28/82 (34%), Positives = 44/82 (53%), Gaps = 3/82 (3%)
Query: 2 NRGNPSRTVYLGSIPYDQTEQQILDLCQTIGPVTAMKMMFDPTTGKSKGYAFIEFKDLAT 61
N + RT+Y+G++ TE I L IG VT K++FD G + YAF+EF D
Sbjct: 40 NGSDEPRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFD---GSNDPYAFVEFSDHGQ 96
Query: 62 SASAVRNLNGYTLGSRSLKCGY 83
++ A++ +N L R +K +
Sbjct: 97 ASQALQTMNKRLLLDREMKVNW 118
Score = 48.9 bits (115), Expect = 7e-06
Identities = 22/76 (28%), Positives = 41/76 (53%)
Query: 10 VYLGSIPYDQTEQQILDLCQTIGPVTAMKMMFDPTTGKSKGYAFIEFKDLATSASAVRNL 69
V++G + + Q++ + Q G V+ K++ D T KSKGY F+ + + A+ +
Sbjct: 137 VFVGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQM 196
Query: 70 NGYTLGSRSLKCGYTT 85
NG LG R+++ + T
Sbjct: 197 NGQWLGRRTIRTNWAT 212
>CE25017 [A] KOG0117 Heterogeneous nuclear ribonucleoprotein R (RRM
superfamily)
Length = 611
Score = 49.7 bits (117), Expect = 4e-06
Identities = 20/67 (29%), Positives = 41/67 (60%)
Query: 10 VYLGSIPYDQTEQQILDLCQTIGPVTAMKMMFDPTTGKSKGYAFIEFKDLATSASAVRNL 69
+Y+G IP D E ++ L + G + +++M DP +G S+GYAF+ + + +A+A +
Sbjct: 202 IYVGHIPTDVFEDTLVPLFEKSGKIWDLRLMMDPMSGASRGYAFVTYCNKEDAAAAAKTY 261
Query: 70 NGYTLGS 76
+G+ + +
Sbjct: 262 DGHEIST 268
>7298629 [R] KOG0126 Predicted RNA-binding protein (RRM superfamily)
Length = 154
Score = 49.7 bits (117), Expect = 4e-06
Identities = 24/74 (32%), Positives = 42/74 (56%)
Query: 7 SRTVYLGSIPYDQTEQQILDLCQTIGPVTAMKMMFDPTTGKSKGYAFIEFKDLATSASAV 66
S +++ PY TE ++ + G V + ++ D TGKSKG+ F+ ++D ++ AV
Sbjct: 33 SAWIFVAGFPYTLTEGDLVCVFSQYGEVVNINLIRDSKTGKSKGFCFLCYEDQRSTVLAV 92
Query: 67 RNLNGYTLGSRSLK 80
NLNG + R+L+
Sbjct: 93 DNLNGIKILDRTLR 106
>Hs11386163 [A] KOG0145 RNA-binding protein ELAV/HU (RRM superfamily)
Length = 380
Score = 49.3 bits (116), Expect = 5e-06
Identities = 21/69 (30%), Positives = 40/69 (57%)
Query: 15 IPYDQTEQQILDLCQTIGPVTAMKMMFDPTTGKSKGYAFIEFKDLATSASAVRNLNGYTL 74
+P + T+++ L +IG + + K++ D TG+S GY F+ + D + A+ LNG L
Sbjct: 53 LPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRL 112
Query: 75 GSRSLKCGY 83
++++K Y
Sbjct: 113 QTKTIKVSY 121
>At1g11650 [R] KOG0118 FOG: RRM domain
Length = 405
Score = 49.3 bits (116), Expect = 5e-06
Identities = 23/79 (29%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Query: 5 NPSRTVYLGSIPYDQTEQQILDLCQTIGP-VTAMKMMFDPTTGKSKGYAFIEFKDLATSA 63
+P T+++G + D T+ +L+ + P V K++ D TG++KGY F+ F D +
Sbjct: 152 SPDYTIFVGDLAADVTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESEQI 211
Query: 64 SAVRNLNGYTLGSRSLKCG 82
A+ +NG +R ++ G
Sbjct: 212 RAMTEMNGVPCSTRPMRIG 230
>Hs4507499 [AJ] KOG0148 Apoptosis-promoting RNA-binding protein TIA-1/TIAR
(RRM superfamily)
Length = 375
Score = 48.9 bits (115), Expect = 7e-06
Identities = 34/119 (28%), Positives = 57/119 (47%), Gaps = 8/119 (6%)
Query: 4 GNPSRTVYLGSIPYDQTEQQILDLCQTIGPVTAMKMMFDPTTGKSKGYAFIEFKDLATSA 63
G P RT+Y+G++ D TE IL L IGP + KM+ + T+ + Y F+EF + +A
Sbjct: 6 GQP-RTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS--NDPYCFVEFYEHRDAA 62
Query: 64 SAVRNLNGYTLGSRSLKCGYTTXXXXXXXXXXXXDEEENGNM-----VEDVKFPWLPVG 117
+A+ +NG + + +K + T G++ ED+K + P G
Sbjct: 63 AALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFG 121
>Hs11863161 [AJ] KOG0148 Apoptosis-promoting RNA-binding protein TIA-1/TIAR
(RRM superfamily)
Length = 375
Score = 48.9 bits (115), Expect = 7e-06
Identities = 32/115 (27%), Positives = 53/115 (45%), Gaps = 7/115 (6%)
Query: 8 RTVYLGSIPYDQTEQQILDLCQTIGPVTAMKMMFDPTTGKSKGYAFIEFKDLATSASAVR 67
+T+Y+G++ D TE IL L IGP KM+ D T + Y F+EF + +A+A+
Sbjct: 7 KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAALA 64
Query: 68 NLNGYTLGSRSLKCGYTTXXXXXXXXXXXXDEEENGNM-----VEDVKFPWLPVG 117
+NG + + +K + T G++ ED+K + P G
Sbjct: 65 AMNGRKIMGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPQITTEDIKAAFAPFG 119
>CE27709 [AJ] KOG0148 Apoptosis-promoting RNA-binding protein TIA-1/TIAR
(RRM superfamily)
Length = 376
Score = 48.9 bits (115), Expect = 7e-06
Identities = 22/76 (28%), Positives = 41/76 (53%)
Query: 10 VYLGSIPYDQTEQQILDLCQTIGPVTAMKMMFDPTTGKSKGYAFIEFKDLATSASAVRNL 69
V++G + + Q++ + Q G V+ K++ D T KSKGY F+ + + A+ +
Sbjct: 105 VFVGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQM 164
Query: 70 NGYTLGSRSLKCGYTT 85
NG LG R+++ + T
Sbjct: 165 NGQWLGRRTIRTNWAT 180
>At3g14100 [R] KOG0118 FOG: RRM domain
Length = 427
Score = 48.9 bits (115), Expect = 7e-06
Identities = 18/76 (23%), Positives = 42/76 (54%)
Query: 10 VYLGSIPYDQTEQQILDLCQTIGPVTAMKMMFDPTTGKSKGYAFIEFKDLATSASAVRNL 69
+++G + + T+ + + ++M+D TG+S+G+ F+ F++ + +A+ +
Sbjct: 146 IFVGDLSPEVTDATLYQSFSVFSSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEM 205
Query: 70 NGYTLGSRSLKCGYTT 85
NG L SR ++C + T
Sbjct: 206 NGKWLSSRQIRCNWAT 221
>SPCC1827.05c [R] KOG4208 Nucleolar RNA-binding protein NIFK
Length = 276
Score = 48.5 bits (114), Expect = 9e-06
Identities = 24/72 (33%), Positives = 39/72 (53%)
Query: 10 VYLGSIPYDQTEQQILDLCQTIGPVTAMKMMFDPTTGKSKGYAFIEFKDLATSASAVRNL 69
+Y+G +P+ E+Q+ GPV ++M + TG SK YAFIEF+ L + +
Sbjct: 107 LYVGRLPHGFYEKQMRMYFSQFGPVLRLRMSRNRKTGSSKHYAFIEFESLDVANVVAETM 166
Query: 70 NGYTLGSRSLKC 81
+ Y L + L+C
Sbjct: 167 HNYLLYGKLLQC 178
>SPBC887.05c [R] KOG0126 Predicted RNA-binding protein (RRM superfamily)
Length = 217
Score = 48.5 bits (114), Expect = 9e-06
Identities = 23/74 (31%), Positives = 42/74 (56%)
Query: 7 SRTVYLGSIPYDQTEQQILDLCQTIGPVTAMKMMFDPTTGKSKGYAFIEFKDLATSASAV 66
S +Y+G++ +D E IL + G + ++ D TGKSKG+AF++++D ++ AV
Sbjct: 30 SAYIYIGNLDFDLNEDDILCVFSEFGEPVDINLVRDKETGKSKGFAFLKYEDQRSTVLAV 89
Query: 67 RNLNGYTLGSRSLK 80
N+ L R ++
Sbjct: 90 DNMTNVKLLDRLVR 103
>SPAC140.02 [K] KOG4210 Nuclear localization sequence binding protein
Length = 500
Score = 48.5 bits (114), Expect = 9e-06
Identities = 20/80 (25%), Positives = 46/80 (57%), Gaps = 1/80 (1%)
Query: 6 PSRTVYLGSIPYDQTEQQILDLCQTIGPVTAMKMMFDPTTGKSKGYAFIEFKDLATSASA 65
PS TV++G++ ++ TE + G + ++++ DP +G+ KG+ ++ F D+ ++
Sbjct: 364 PSDTVFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAKKC 423
Query: 66 VRNLNGYTLGSRSLKCGYTT 85
V +NG+ + R + ++T
Sbjct: 424 V-EMNGHFIAGRPCRLDFST 442
>Hs4507119 [A] KOG0113 U1 small nuclear ribonucleoprotein (RRM superfamily)
Length = 614
Score = 48.5 bits (114), Expect = 9e-06
Identities = 21/75 (28%), Positives = 43/75 (57%)
Query: 3 RGNPSRTVYLGSIPYDQTEQQILDLCQTIGPVTAMKMMFDPTTGKSKGYAFIEFKDLATS 62
+G+ +T+++ + YD TE ++ + GP+ + M++ +GK +GYAFIE++
Sbjct: 275 QGDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDM 334
Query: 63 ASAVRNLNGYTLGSR 77
SA ++ +G + R
Sbjct: 335 HSAYKHADGKKIDGR 349
>Hs22050771 [A] KOG0113 U1 small nuclear ribonucleoprotein (RRM superfamily)
Length = 437
Score = 48.5 bits (114), Expect = 9e-06
Identities = 21/75 (28%), Positives = 43/75 (57%)
Query: 3 RGNPSRTVYLGSIPYDQTEQQILDLCQTIGPVTAMKMMFDPTTGKSKGYAFIEFKDLATS 62
+G+ +T+++ + YD TE ++ + GP+ + M++ +GK +GYAFIE++
Sbjct: 98 QGDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDM 157
Query: 63 ASAVRNLNGYTLGSR 77
SA ++ +G + R
Sbjct: 158 HSAYKHADGKKIDGR 172
>At3g53460 [R] KOG0118 FOG: RRM domain
Length = 342
Score = 48.5 bits (114), Expect = 9e-06
Identities = 20/79 (25%), Positives = 43/79 (54%)
Query: 2 NRGNPSRTVYLGSIPYDQTEQQILDLCQTIGPVTAMKMMFDPTTGKSKGYAFIEFKDLAT 61
N +P +++G++ ++ Q+ L ++ G V +++++D TG+S+G+ F+ A
Sbjct: 93 NSFSPDLKLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAE 152
Query: 62 SASAVRNLNGYTLGSRSLK 80
+A + NGY R L+
Sbjct: 153 VEAAAQQFNGYEFEGRPLR 171
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.315 0.131 0.375
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,966,934
Number of Sequences: 60738
Number of extensions: 503295
Number of successful extensions: 1889
Number of sequences better than 1.0e-05: 80
Number of HSP's better than 0.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 1733
Number of HSP's gapped (non-prelim): 154
length of query: 258
length of database: 30,389,216
effective HSP length: 104
effective length of query: 154
effective length of database: 24,072,464
effective search space: 3707159456
effective search space used: 3707159456
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)