ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactVI2520 good O KOG0745 Posttranslational modification, protein turnover, chaperones Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily)
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactVI2520 893725 892211 -505
(505 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YBR227c [O] KOG0745 Putative ATP-dependent Clp-type protease (AA... 615 e-176
Hs7242140 [O] KOG0745 Putative ATP-dependent Clp-type protease (... 272 8e-73
At5g53350 [O] KOG0745 Putative ATP-dependent Clp-type protease (... 253 6e-67
At1g33360 [O] KOG0745 Putative ATP-dependent Clp-type protease (... 251 1e-66
At5g49840 [O] KOG0745 Putative ATP-dependent Clp-type protease (... 250 3e-66
7300561 [O] KOG0745 Putative ATP-dependent Clp-type protease (AA... 247 3e-65
CE23855 [O] KOG0745 Putative ATP-dependent Clp-type protease (AA... 240 3e-63
CE09079 [O] KOG0745 Putative ATP-dependent Clp-type protease (AA... 225 1e-58
>YBR227c [O] KOG0745 Putative ATP-dependent Clp-type protease (AAA+ ATPase
superfamily)
Length = 520
Score = 615 bits (1585), Expect = e-176
Identities = 317/486 (65%), Positives = 379/486 (77%), Gaps = 9/486 (1%)
Query: 13 RICFSASSKLIHGSKNKIPSPKELKNFLDEYIVGQNDGKKVCSVAVYNHYLRVNDKQKKL 72
R +AS KL + IP+PK LK FLDEYIVGQ GKKV SVAVYNHYLR+NDKQKK
Sbjct: 19 RYAATASGKLAQSRLSNIPTPKALKKFLDEYIVGQEIGKKVLSVAVYNHYLRINDKQKKG 78
Query: 73 EARLQRKLLEEQQKKLDSTSPIEFTSTEAEQGMRNLQRQXXXXXXXXXXXXXXXXXNLMV 132
E + QR+L+E ++ D PI ++E++ G RNLQRQ N++V
Sbjct: 79 ELQRQRELMEREKIADDRDEPIFSGNSESKAGWRNLQRQFNLAGREVDEDLELSKSNVLV 138
Query: 133 VGPSGSGKTLLATTLARMLDVPIAITDCTQLTQAGYIGEDVEVCIERLLINADYDVAKAE 192
VGPSGSGKTLLATTLA++L+VPIAITDCTQLTQAGYIGEDVEVCIERLL+NA++DVA+AE
Sbjct: 139 VGPSGSGKTLLATTLAKILNVPIAITDCTQLTQAGYIGEDVEVCIERLLVNAEFDVARAE 198
Query: 193 KGIIVLDEVDKLAKPAASIGTKDVSGEGVQQSLLKILEGHGVELTLKRPVNKKKDDKNNQ 252
KGIIVLDE+DKLAKPAASIGTKDVSGEGVQQSLLKI+EGH VE+T+KRPV D + NQ
Sbjct: 199 KGIIVLDEIDKLAKPAASIGTKDVSGEGVQQSLLKIIEGHKVEITVKRPVKHDIDGQKNQ 258
Query: 253 TAAKKEETFVVDTSNILFMLMGAFVGLDKHIVKRIERIKNPDATANDKESD--------- 303
T KK+E FVVDTSNILFM+MGAFVGLDKHIVKRIE +K ES
Sbjct: 259 TTTKKDEVFVVDTSNILFMIMGAFVGLDKHIVKRIEDMKKIQKAGESVESSNSKEVEKER 318
Query: 304 SKKLRFSNTIEHIDIGDGKTISALNFVTPSDLVSYGIIPELIGRVPIVTALEPLKQTDLF 363
+KK RFSNT+E +++ +GK + AL+ TP+DLVS+G+IPELIGRVPI+TAL+PL++ DLF
Sbjct: 319 AKKFRFSNTLEQVELDNGKKVCALDLTTPTDLVSFGLIPELIGRVPIITALQPLQRDDLF 378
Query: 364 HILKEPRNALLHQYEYIFKQFGVTLGVTEKALKRVAQFALKEGTGARGLRGIMERLLLNV 423
HILKEP+NALL QYEYIFKQFGV L VT+KALK+VAQFALKEGTGARGLRGIMERLLLNV
Sbjct: 379 HILKEPKNALLDQYEYIFKQFGVRLCVTQKALKKVAQFALKEGTGARGLRGIMERLLLNV 438
Query: 424 NYECPDSGISYVLVNEETVKALQHKEHSLSTKVKAKYYSRGEQDQFVIDVYKEDEQLGKE 483
NY+CP S I+YVL++E TV +LQ EHSL+++V KYYS E+D + DV +ED++LG
Sbjct: 439 NYDCPGSNIAYVLIDEATVDSLQETEHSLASQVDVKYYSGDEKDSLIRDVSEEDKKLGVM 498
Query: 484 FDKRFG 489
+K G
Sbjct: 499 LEKELG 504
>Hs7242140 [O] KOG0745 Putative ATP-dependent Clp-type protease (AAA+ ATPase
superfamily)
Length = 633
Score = 272 bits (696), Expect = 8e-73
Identities = 181/453 (39%), Positives = 247/453 (53%), Gaps = 64/453 (14%)
Query: 31 PSPKELKNFLDEYIVGQNDGKKVCSVAVYNHYLRVNDKQKKLEARLQRKLLEEQQKKLDS 90
P PK++ N+LD+Y+VGQ+ KKV SVAVYNHY R+ + + A L+++ E+Q L +
Sbjct: 167 PPPKKIYNYLDKYVVGQSFAKKVLSVAVYNHYKRIYNN---IPANLRQQAEVEKQTSL-T 222
Query: 91 TSPIEFTSTEAEQGMRNL---------------------------QRQXXXXXXXXXXXX 123
+E E E L +++
Sbjct: 223 PRELEIRRREDEYRFTKLLQIAGISPHGNALGASMQQQVNQQIPQEKRGGEVLDSSHDDI 282
Query: 124 XXXXXNLMVVGPSGSGKTLLATTLARMLDVPIAITDCTQLTQAGYIGEDVEVCIERLLIN 183
N++++GP+GSGKTLLA TLA+ LDVP AI DCT LTQAGY+GED+E I +LL +
Sbjct: 283 KLEKSNILLLGPTGSGKTLLAQTLAKCLDVPFAICDCTTLTQAGYVGEDIESVIAKLLQD 342
Query: 184 ADYDVAKAEKGIIVLDEVDKLAKPAASIGTKDVSGEGVQQSLLKILEGHGVELTLKRPVN 243
A+Y+V KA++GI+ LDEVDK+ +DV GEGVQQ LLK+LEG V + K N
Sbjct: 343 ANYNVEKAQQGIVFLDEVDKIGSVPGIHQLRDVGGEGVQQGLLKLLEGTIVNVPEK---N 399
Query: 244 KKKDDKNNQTAAKKEETFVVDTSNILFMLMGAFVGLDKHIVKRIERIKNPDATANDKESD 303
+K + ET VDT+NILF+ GAF GLD+ I +R KN S+
Sbjct: 400 SRK---------LRGETVQVDTTNILFVASGAFNGLDRIISRR----KNEKYLGFGTPSN 446
Query: 304 SKKLR-------------FSNTIEHIDIGDGKTISALNFVTPSDLVSYGIIPELIGRVPI 350
K R SNT + I+ D L V DL+ +G+IPE +GR+P+
Sbjct: 447 LGKGRRAAAAADLANRSGESNTHQDIEEKD----RLLRHVEARDLIEFGMIPEFVGRLPV 502
Query: 351 VTALEPLKQTDLFHILKEPRNALLHQYEYIFKQFGVTLGVTEKALKRVAQFALKEGTGAR 410
V L L + L IL EPRNA++ QY+ +F L VTE ALK +A+ AL+ TGAR
Sbjct: 503 VVPLHSLDEKTLVQILTEPRNAVIPQYQALFSMDKCELNVTEDALKAIARLALERKTGAR 562
Query: 411 GLRGIMERLLLNVNYECPDSGISYVLVNEETVK 443
GLR IME+LLL +E P+S I V V++E V+
Sbjct: 563 GLRSIMEKLLLEPMFEVPNSDIVCVEVDKEVVE 595
>At5g53350 [O] KOG0745 Putative ATP-dependent Clp-type protease (AAA+ ATPase
superfamily)
Length = 579
Score = 253 bits (645), Expect = 6e-67
Identities = 160/424 (37%), Positives = 239/424 (55%), Gaps = 69/424 (16%)
Query: 31 PSPKELKNFLDEYIVGQNDGKKVCSVAVYNHYLRVNDKQKKLEARLQRKLLEEQQKKLDS 90
P+PKE+ L+++++GQ KKV SVAVYNHY R+ + + + + DS
Sbjct: 159 PTPKEICKGLNKFVIGQERAKKVLSVAVYNHYKRIYHESSQ----------KRSAGETDS 208
Query: 91 TSPIEFTSTEAEQGMRNLQRQXXXXXXXXXXXXXXXXXNLMVVGPSGSGKTLLATTLARM 150
T+ + A+ M L++ N++++GP+GSGKTLLA TLAR
Sbjct: 209 TA-----AKPADDDMVELEKS-----------------NILLMGPTGSGKTLLAKTLARF 246
Query: 151 LDVPIAITDCTQLTQAGYIGEDVEVCIERLLINADYDVAKAEKGIIVLDEVDKLAKPAAS 210
++VP I D T LTQAGY+GEDVE + +LL ADY+VA A++GI+ +DEVDK+ K A S
Sbjct: 247 VNVPFVIADATTLTQAGYVGEDVESILYKLLTVADYNVAAAQQGIVYIDEVDKITKKAES 306
Query: 211 IG-TKDVSGEGVQQSLLKILEGHGVELTLKRPVNKKKDDKNNQTAAKKEETFVVDTSNIL 269
+ ++DVSGEGVQQ+LLK+LEG V + K + D +DT +IL
Sbjct: 307 LNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGD-----------NIQIDTKDIL 355
Query: 270 FMLMGAFVGLDKHIVKRIERIKNPDATANDKESDSKKLRFSNTIEHIDIGDGKTISA--- 326
F+ GAFV ++K T +++ DS + F + G T +A
Sbjct: 356 FICGGAFVDIEK--------------TISERRHDS-SIGFGAPVRANMRAGGVTNAAVAS 400
Query: 327 --LNFVTPSDLVSYGIIPELIGRVPIVTALEPLKQTDLFHILKEPRNALLHQYEYIFKQF 384
+ V SDL++YG+IPE +GR P++ +L L + L +L EP+NAL QY+ +++
Sbjct: 401 NLMETVESSDLIAYGLIPEFVGRFPVLVSLSALTENQLMQVLTEPKNALGKQYKKMYQMN 460
Query: 385 GVTLGVTEKALKRVAQFALKEGTGARGLRGIMERLLLNVNYECPDSG-----ISYVLVNE 439
V L TE AL+ +A+ A+ + TGARGLR ++E +L++ YE PD G I V+V+E
Sbjct: 461 SVKLHFTESALRLIARKAITKNTGARGLRALLESILMDSMYEIPDEGTGSDMIEAVVVDE 520
Query: 440 ETVK 443
E V+
Sbjct: 521 EAVE 524
>At1g33360 [O] KOG0745 Putative ATP-dependent Clp-type protease (AAA+ ATPase
superfamily)
Length = 670
Score = 251 bits (642), Expect = 1e-66
Identities = 160/426 (37%), Positives = 233/426 (54%), Gaps = 39/426 (9%)
Query: 25 GSKNKIPSPKELKNFLDEYIVGQNDGKKVCSVAVYNHYLRVNDKQKKLEARLQRKLLEEQ 84
G P+PKE+ +LD++++GQ+ KKV SVAVYNHY R+ K K L
Sbjct: 244 GLGRDFPTPKEICKWLDKFVIGQSRAKKVLSVAVYNHYKRIYHTSMK-------KGLLHD 296
Query: 85 QKKLDSTSPIEFTSTEAEQGMRNLQRQXXXXXXXXXXXXXXXXXNLMVVGPSGSGKTLLA 144
L +P+ FT + L + N++++GP+GSGKTLLA
Sbjct: 297 SDALSPFNPLWFTLI-----LWTLNPRSAAQPIDDDDNVELDKSNVLLMGPTGSGKTLLA 351
Query: 145 TTLARMLDVPIAITDCTQLTQAGYIGEDVEVCIERLLINADYDVAKAEKGIIVLDEVDKL 204
TLAR+++VP I D T LTQAGY+G+DVE + +LL A+++V A++GI+ +DEVDK+
Sbjct: 352 KTLARLVNVPFVIADATTLTQAGYVGDDVESILHKLLTVAEFNVQAAQQGIVYIDEVDKI 411
Query: 205 AKPAASIG-TKDVSGEGVQQSLLKILEGHGVELTLKRPVNKKKDDKNNQTAAKKEETFVV 263
K A S+ ++DVSGEGVQQ+LLK+LEG V + K + D +
Sbjct: 412 TKKAESLNISRDVSGEGVQQALLKLLEGTIVNVPGKGARKHPRGDH-----------IQI 460
Query: 264 DTSNILFMLMGAFVGLDKHIVKRIERIKNPDATANDKESDSKKLRFSNTIEHIDIGDGKT 323
DT +ILF+ GAFV L+K IV D + +R + + G T
Sbjct: 461 DTKDILFICGGAFVDLEKTIV---------DRRQDSSIGFGAPVRANMATSGVTSG-AIT 510
Query: 324 ISALNFVTPSDLVSYGIIPELIGRVPIVTALEPLKQTDLFHILKEPRNALLHQYEYIFKQ 383
S L V +DL +YG+IPE +GR PI+ +L L + L +L EP+NAL QY+ +F
Sbjct: 511 SSLLESVESADLTAYGLIPEFVGRFPILVSLSALTEDQLIRVLVEPKNALGKQYKKLFSM 570
Query: 384 FGVTLGVTEKALKRVAQFALKEGTGARGLRGIMERLLLNVNYECP-----DSGISYVLVN 438
V L TEKAL+ +++ A+ + TGARGLR ++E +L +E P D I V+V+
Sbjct: 571 NNVKLHFTEKALEIISKQAMVKNTGARGLRALLESILTEAMFEIPDDKKGDERIDAVIVD 630
Query: 439 EETVKA 444
EE+ +
Sbjct: 631 EESTSS 636
>At5g49840 [O] KOG0745 Putative ATP-dependent Clp-type protease (AAA+ ATPase
superfamily)
Length = 608
Score = 250 bits (639), Expect = 3e-66
Identities = 158/421 (37%), Positives = 234/421 (55%), Gaps = 58/421 (13%)
Query: 29 KIPSPKELKNFLDEYIVGQNDGKKVCSVAVYNHYLRVNDKQKKLEARLQRKLLEEQQKKL 88
K+P+PKE+ LDE+++GQ KKV SVAVYNHY R+ +K + + ++ + +
Sbjct: 196 KLPTPKEICQGLDEFVIGQEKAKKVLSVAVYNHYKRIYHASRKKGSASESYNIDMEDDNI 255
Query: 89 DSTSPIEFTSTEAEQGMRNLQRQXXXXXXXXXXXXXXXXXNLMVVGPSGSGKTLLATTLA 148
D N++++GP+GSGKTLLA TLA
Sbjct: 256 DHVE--------------------------------LDKSNVLLLGPTGSGKTLLAKTLA 283
Query: 149 RMLDVPIAITDCTQLTQAGYIGEDVEVCIERLLINADYDVAKAEKGIIVLDEVDKLA-KP 207
R+++VP AI D T LTQAGY+GEDVE + +L + A +V +A++GI+ +DEVDK+ K
Sbjct: 284 RIVNVPFAIADATSLTQAGYVGEDVESILYKLYVEAGCNVEEAQRGIVYIDEVDKMTMKS 343
Query: 208 AASIGTKDVSGEGVQQSLLKILEGHGVELTLKRPVNKKKDDKNNQTAAKKEETFVVDTSN 267
+S G +DVSGEGVQQSLLK+LEG V + P+ +K ++ + ++ +DT +
Sbjct: 344 HSSNGGRDVSGEGVQQSLLKLLEGTVVSV----PIPEKGLRRD-----PRGDSIQMDTKD 394
Query: 268 ILFMLMGAFVGLDKHIVKRIERIKNPDATANDKESDSKKLRFSNTIEHIDIGDGKTISAL 327
ILF+ GAF+ L+K + +R DA+ S + S T S L
Sbjct: 395 ILFICGGAFIDLEKTVSER-----QHDASIGFGASVRTNMSTSGL-----SSAAVTSSLL 444
Query: 328 NFVTPSDLVSYGIIPELIGRVPIVTALEPLKQTDLFHILKEPRNALLHQYEYIFKQFGVT 387
+ DLV+YG+IPE +GR+PI+ +L L + L +L EP++AL QY+ +F+ V
Sbjct: 445 ESLQSEDLVAYGLIPEFVGRLPILVSLSALNEDQLVQVLTEPKSALGKQYKKLFRMNNVQ 504
Query: 388 LGVTEKALKRVAQFALKEGTGARGLRGIMERLLLNVNYECPDS------GISYVLVNEET 441
L TE A + +A+ A+ + TGARGLR I+E +L +E PDS I VLV+EE
Sbjct: 505 LQFTEGATRLIARKAMSKNTGARGLRSILESILTEAMFEVPDSITEGSQSIKAVLVDEEA 564
Query: 442 V 442
V
Sbjct: 565 V 565
>7300561 [O] KOG0745 Putative ATP-dependent Clp-type protease (AAA+ ATPase
superfamily)
Length = 611
Score = 247 bits (631), Expect = 3e-65
Identities = 162/464 (34%), Positives = 235/464 (49%), Gaps = 58/464 (12%)
Query: 31 PSPKELKNFLDEYIVGQNDGKKVCSVAVYNHYLRVNDKQKKLEAR--------------- 75
P P+++ +LD+++VGQ+ KKV +VAVYNHY R++ +L+ +
Sbjct: 128 PPPQKIMEYLDKHVVGQDFAKKVLAVAVYNHYKRIHHNLPQLQNQGAGASNGAGGGLDGI 187
Query: 76 ----------LQRKLLEEQQKKLDSTSPIEF------------------TSTEAEQGMRN 107
+ L +L SP + +S+ A G N
Sbjct: 188 PRPDLLHITGIGHTLNSSPGNELPPKSPTQMGMGGGMGGPGLGAGLTGASSSNARGGGDN 247
Query: 108 LQRQXXXXXXXXXXXXXXXXXNLMVVGPSGSGKTLLATTLARMLDVPIAITDCTQLTQAG 167
R N++++GP+GSGKTL+A T+A+ LDVP AI DCT LTQAG
Sbjct: 248 --RSGSEILDRQSTDVKLEKSNIIMLGPTGSGKTLIAQTIAKCLDVPFAICDCTTLTQAG 305
Query: 168 YIGEDVEVCIERLLINADYDVAKAEKGIIVLDEVDKLAKPAASIGTKDVSGEGVQQSLLK 227
Y+GED+E I +LL +A+Y+V +A+ GI+ LDEVDK+ +DV GEGVQQ +LK
Sbjct: 306 YVGEDIESVISKLLQDANYNVERAQTGIVFLDEVDKIGAVPGIHQLRDVGGEGVQQGMLK 365
Query: 228 ILEGHGVELTLKRPVNKKKDDKNNQTAAKKEETFVVDTSNILFMLMGAFVGLDKHIVKRI 287
+LEG V + + N + ET VDT+NILF+ GA+ GLD+ I +R+
Sbjct: 366 MLEGTVVNV-----------PERNSPRKLRGETVQVDTTNILFVASGAYTGLDRLIARRL 414
Query: 288 ERIKNPDATANDKESDSKKLRFSNTIEHIDIGDGKTISALNFVTPSDLVSYGIIPELIGR 347
+ S S + + +D + L V DLV +G+IPE +GR
Sbjct: 415 N--EKYLGFGMPSTSGSGRRAAQSAASPMDNDQEERDKCLTKVQARDLVEFGMIPEFVGR 472
Query: 348 VPIVTALEPLKQTDLFHILKEPRNALLHQYEYIFKQFGVTLGVTEKALKRVAQFALKEGT 407
P++ L + L IL EPRNAL+ QY+ + V L TE A+K +AQ A++ T
Sbjct: 473 FPVIVPFHSLNVSMLVRILTEPRNALVPQYKALLGLDEVDLTFTEDAVKSIAQLAMERHT 532
Query: 408 GARGLRGIMERLLLNVNYECPDSGISYVLVNEETVKALQHKEHS 451
GARGLR IME+LLL+ + P S I V + + VK E+S
Sbjct: 533 GARGLRSIMEQLLLDPMFIVPGSDIRGVHITADYVKGSATPEYS 576
>CE23855 [O] KOG0745 Putative ATP-dependent Clp-type protease (AAA+ ATPase
superfamily)
Length = 518
Score = 240 bits (613), Expect = 3e-63
Identities = 146/434 (33%), Positives = 235/434 (53%), Gaps = 46/434 (10%)
Query: 27 KNKIPSPKELKNFLDEYIVGQNDGKKVCSVAVYNHYLRVNDKQKKLE---------ARLQ 77
K I PKE+ L++Y+VGQ + KK +VAVY HY RV + + E A +
Sbjct: 95 KKLILHPKEIVEHLNKYVVGQEEAKKYLAVAVYQHYRRVENNLRVTEQWMLSEAVAAAKE 154
Query: 78 RKLLEEQQKKLDSTSPIEFTSTEAEQGMRNLQRQXXXXXXXXXXXXXXXXXNLMVVGPSG 137
RK + +Q + + P E+ Q +++L+++ N++++G SG
Sbjct: 155 RKKMRKQNPEEEEYYP-EYVQKSQRQILKDLEKRQDMILDKS---------NMILLGASG 204
Query: 138 SGKTLLATTLARMLDVPIAITDCTQLTQAGYIGEDVEVCIERLLINADYDVAKAEKGIIV 197
+GKT + LA +LDVPI I DCT LTQAGY+G+DV+ I++LL A D+ K ++GI+
Sbjct: 205 TGKTFMTQKLAEVLDVPIVICDCTTLTQAGYVGDDVDTVIQKLLAEAMGDIEKCQRGIVF 264
Query: 198 LDEVDKL---AKPAASIGTKDVSGEGVQQSLLKILEGHGVELTLKRPVNKKKDDKNNQTA 254
LDE DK+ + P + G +DVSG+GVQQ+LLK++EG V++ N K
Sbjct: 265 LDEFDKIYTSSDPLHTSGNRDVSGKGVQQALLKLVEGSLVKVRDPLAPNSK--------- 315
Query: 255 AKKEETFVVDTSNILFMLMGAFVGLDKHIVKRIERIKNPDATANDKESDSKKLRFSNTIE 314
+DTSNILF+ GAF ++ + +R+++ +A KL +T E
Sbjct: 316 ------VTIDTSNILFIASGAFSNIEHIVARRMDKRSLGFLSATSPH----KLGDQDTTE 365
Query: 315 HIDIGDGKTISA-----LNFVTPSDLVSYGIIPELIGRVPIVTALEPLKQTDLFHILKEP 369
+ D + +S + DL+S+G+IPEL+GR P++ L +T L +L EP
Sbjct: 366 KLRDSDEEIVSKARNEMIKQCDQGDLISFGMIPELVGRFPVIVPFHCLDKTHLMSVLTEP 425
Query: 370 RNALLHQYEYIFKQFGVTLGVTEKALKRVAQFALKEGTGARGLRGIMERLLLNVNYECPD 429
R +L+ Q + F+ V L + A++ +A+ A+K TGAR L+ I+E+ ++N YE P
Sbjct: 426 RGSLIAQTKKFFENENVELRFSPAAIEAIAEMAVKRKTGARALKSIVEKAVMNAKYEVPG 485
Query: 430 SGISYVLVNEETVK 443
S + V + ++ +K
Sbjct: 486 SDVKCVEITDQNLK 499
>CE09079 [O] KOG0745 Putative ATP-dependent Clp-type protease (AAA+ ATPase
superfamily)
Length = 586
Score = 225 bits (573), Expect = 1e-58
Identities = 150/456 (32%), Positives = 229/456 (49%), Gaps = 53/456 (11%)
Query: 31 PSPKELKNFLDEYIVGQNDGKKVCSVAVYNHYLRVNDKQKK------------------- 71
P P ++ +LD+++VGQ KK +V VY HY R+ +
Sbjct: 128 PYPTQIAEYLDKFVVGQKKAKKTLAVGVYQHYRRLEHNIETGASSIYQTHAQTSSSGKSL 187
Query: 72 ----LEARLQRKLLEEQQKKLDSTSPIEFTSTEAEQGMRNLQRQXXXXXXXXXXXXXXX- 126
++ ++ R + + + +L + E ++ +Q N
Sbjct: 188 SNDGMDPKMPRGVFYQDELRLGQMASSELRNSIMQQQSNNQPPSPAQSPRNAAPTFRALP 247
Query: 127 ---------XXNLMVVGPSGSGKTLLATTLARMLDVPIAITDCTQLTQAGYIGEDVEVCI 177
N+++VGPSG GKT L TLAR+LDVPIA+ DCT +TQAGY+GEDVE I
Sbjct: 248 EKEQSVRLEKSNVLLVGPSGVGKTFLTQTLARVLDVPIALCDCTSMTQAGYVGEDVESVI 307
Query: 178 ERLLINADYDVAKAEKGIIVLDEVDKL--AKPAASIGTKDVSGEGVQQSLLKILEGHGVE 235
++L+ A +V KA++GI+ LDEVDK+ A S +DVSGEGVQ +LLK++EG
Sbjct: 308 QKLVQAAGGNVEKAQQGIVFLDEVDKIAAAHEGHSAAYRDVSGEGVQHALLKLVEG---- 363
Query: 236 LTLKRPVNKKKDDKNNQTAAKKEETFVVDTSNILFMLMGAFVGLDKHIVKRIERIKNPDA 295
VN K K +++ +DT++ILF+ GAF LDK + +R+ D
Sbjct: 364 ----TVVNVKSGKKG---MGSQQDQVQIDTTDILFIASGAFSNLDKIVGRRL------DK 410
Query: 296 TANDKESDSKKLRFSNTIEHIDIGDGKTISALNFVTPSDLVSYGIIPELIGRVPIVTALE 355
A + S +R S + ++ K L+ DL+S+G++PEL+GR P++
Sbjct: 411 KALGFGTSSGNVRISGDDSNSEV-MRKRDELLSKADQGDLISFGMVPELVGRFPVLVPFH 469
Query: 356 PLKQTDLFHILKEPRNALLHQYEYIFKQFGVTLGVTEKALKRVAQFALKEGTGARGLRGI 415
+ L ++ EP+N+LL Q + F V L + +AL++VAQ AL TGAR LR I
Sbjct: 470 SFDKQMLVRVMTEPQNSLLAQLKLQFGIDNVDLSFSAEALEQVAQLALDRKTGARALRSI 529
Query: 416 MERLLLNVNYECPDSGISYVLVNEETVKALQHKEHS 451
+E LL + P S I V V+ E + + E+S
Sbjct: 530 LEAALLEAKFTVPGSDIESVHVSREAILGEKEVEYS 565
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.315 0.135 0.369
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,387,004
Number of Sequences: 60738
Number of extensions: 1238408
Number of successful extensions: 4144
Number of sequences better than 1.0e-05: 8
Number of HSP's better than 0.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 4106
Number of HSP's gapped (non-prelim): 14
length of query: 505
length of database: 30,389,216
effective HSP length: 111
effective length of query: 394
effective length of database: 23,647,298
effective search space: 9317035412
effective search space used: 9317035412
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)