ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactVI2556 good A KOG3702 RNA processing and modification Nuclear polyadenylated RNA binding protein
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactVI2556 906080 904515 -522
(522 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YGL122c [A] KOG3702 Nuclear polyadenylated RNA binding protein 291 2e-78
Hs13376222 [A] KOG3702 Nuclear polyadenylated RNA binding protein 55 3e-07
SPAC14C4.06c [A] KOG3702 Nuclear polyadenylated RNA binding protein 53 1e-06
>YGL122c [A] KOG3702 Nuclear polyadenylated RNA binding protein
Length = 525
Score = 291 bits (744), Expect = 2e-78
Identities = 154/317 (48%), Positives = 173/317 (53%), Gaps = 38/317 (11%)
Query: 191 NRRGVNSRYGA-NQLAMALGINESEGANETSGHVVIKREGRCPDFPHCSLGRKCPRGHPT 249
NR G N+ N LA ALG+ N T K+EGRC FPHC LGR CP HPT
Sbjct: 225 NRGGRNNNSTRFNPLAKALGMAGESNMNFTP----TKKEGRCRLFPHCPLGRSCPHAHPT 280
Query: 250 VTCPSYPNCKNPPGTCTYLHPNEDGXXXXXXXXXXXXXXXXXXXXXXXXXX-XXSGIVVC 308
C YPNC PPGTC +LHPNED +GIV+C
Sbjct: 281 KVCNEYPNCPKPPGTCEFLHPNEDEELMKEMERTREEFQKRKADLLAAKRKPVQTGIVLC 340
Query: 309 KFGIICSNQKCPFGHPTPANEDAKVTQFSWCENNLQCTDPTCNKAHSSLSXXXXXXXXXX 368
KFG +CSN CPFGHPTPANEDAKV WC+ NL C +P C KAHSSLS
Sbjct: 341 KFGALCSNPSCPFGHPTPANEDAKVIDLMWCDKNLTCDNPECRKAHSSLSKI-------- 392
Query: 369 XXXXXXXXSKPSNPKFAPRSVVPLEEKILEQCKFGPKCTNKNCPKRHARSSIMCREGAQC 428
K P ++ P EK LEQCKFG CTNK C RHARS IMCREGA C
Sbjct: 393 ---------KEVKPISQKKAAPPPVEKSLEQCKFGTHCTNKRCKYRHARSHIMCREGANC 443
Query: 429 TRIDCLFGHPINEPCRYGAECRTYGCLFQHPPERVLPEKPKKPDTENTNGIWFNPQLIGS 488
TRIDCLFGHPINE CR+G C+ CLF+HPP RVLPE KK N+
Sbjct: 444 TRIDCLFGHPINEDCRFGVNCKNIYCLFRHPPGRVLPE--KKGAAPNS------------ 489
Query: 489 GNSSSNERPFAVPESNV 505
N +NERPFA+PE+ +
Sbjct: 490 -NVPTNERPFALPENAI 505
Score = 78.2 bits (191), Expect = 3e-14
Identities = 36/88 (40%), Positives = 54/88 (60%)
Query: 6 EYIASNLKTVISERLKVVPNFNEDVNQVAEYITLLMSNGSSGPDIVQELTSLFDGISTQE 65
E NLK +++E+L +PNFNED+ VAEYI LL+ NG + +V EL SLFD +S
Sbjct: 4 EQYTENLKVIVAEKLAGIPNFNEDIKYVAEYIVLLIVNGGTVESVVDELASLFDSVSRDT 63
Query: 66 FQSVVSIAFTSADLLKAGDDLNTVYAKL 93
+VV AF + + L+ G+ + +K+
Sbjct: 64 LANVVQTAFFALEALQQGESAENIVSKI 91
>Hs13376222 [A] KOG3702 Nuclear polyadenylated RNA binding protein
Length = 401
Score = 54.7 bits (130), Expect = 3e-07
Identities = 52/218 (23%), Positives = 66/218 (29%), Gaps = 95/218 (43%)
Query: 230 RCPDFPHCSLGRKCPRGHPTVTCPSYPNCKNPPGTCTYLHPNEDGXXXXXXXXXXXXXXX 289
RC +P C G +C HP C ++PN
Sbjct: 266 RCKYWPACKNGDECAYHHPISPCKAFPN-------------------------------- 293
Query: 290 XXXXXXXXXXXXXSGIVVCKFGIICSNQKCPFGHPTPANEDAKVTQFSWCENNLQCTDPT 349
CKF +KC F HP C+ + +CT P
Sbjct: 294 ------------------CKFA-----EKCLFVHPN-------------CKYDAKCTKPD 317
Query: 350 CNKAHSSLSXXXXXXXXXXXXXXXXXXSKPSNPKFAPRSVVPLEEKILEQ-CKFGPKCTN 408
C H S P +P+ V P Q C++ P C
Sbjct: 318 CPFTHVSRRI----------------------PVLSPKPVAPPAPPSSSQLCRYFPACKK 355
Query: 409 KNCPKRHARSSIMCREGAQCTRIDCLFGHP-INEPCRY 445
CP H + CR QCTR DC F HP IN P R+
Sbjct: 356 MECPFYHPKH---CRFNTQCTRPDCTFYHPTINVPPRH 390
Score = 50.8 bits (120), Expect = 5e-06
Identities = 34/122 (27%), Positives = 46/122 (36%), Gaps = 34/122 (27%)
Query: 381 NPKFAPRSVVPLEEKILEQCKFGPKCTNKNCPKRHAR------------------SSIMC 422
N KFA + + + CK+ KCT +CP H SS +C
Sbjct: 293 NCKFAEKCLF-----VHPNCKYDAKCTKPDCPFTHVSRRIPVLSPKPVAPPAPPSSSQLC 347
Query: 423 REGAQCTRIDCLFGHPINEPCRYGAECRTYGCLFQHPPERVLPEKPKKPDTENTNGIWFN 482
R C +++C F HP + CR+ +C C F HP V P K W
Sbjct: 348 RYFPACKKMECPFYHP--KHCRFNTQCTRPDCTFYHPTINVPPRHALK---------WIR 396
Query: 483 PQ 484
PQ
Sbjct: 397 PQ 398
Score = 50.1 bits (118), Expect = 8e-06
Identities = 34/88 (38%), Positives = 41/88 (45%), Gaps = 9/88 (10%)
Query: 388 SVVPLEEKILEQCKFGPKCTN-KNCPKRHARSSIMCREGAQCTRID-CLFGHPINEPCRY 445
SV EK+LE+CK+ P C N C H S C+ C + CLF HP C+Y
Sbjct: 255 SVAQKPEKLLERCKYWPACKNGDECAYHHPISP--CKAFPNCKFAEKCLFVHP---NCKY 309
Query: 446 GAECRTYGCLFQHPPER--VLPEKPKKP 471
A+C C F H R VL KP P
Sbjct: 310 DAKCTKPDCPFTHVSRRIPVLSPKPVAP 337
>SPAC14C4.06c [A] KOG3702 Nuclear polyadenylated RNA binding protein
Length = 307
Score = 53.1 bits (126), Expect = 1e-06
Identities = 45/153 (29%), Positives = 59/153 (38%), Gaps = 49/153 (32%)
Query: 387 RSVVPLEEKILEQ------CKFGPKCTNKNCPKRHAR-----------SSIMCREGAQCT 429
+SV+P ++ L Q CK+ KC+ NC H SS MC G +C
Sbjct: 165 KSVMPAAKRALTQTQEVPLCKYADKCSRANCIFAHPTPAAAPGEGMVLSSEMCASGKECK 224
Query: 430 RIDCLFGHP----------------INEPCRYGAECRTYGCLFQHPPERVLPEKPKKPDT 473
DC+ GHP I PC+Y C C F HP T
Sbjct: 225 AADCVKGHPSPATVTTLPPFMSMSTIPIPCKY-KPCLNPACRFIHP-------------T 270
Query: 474 ENTNGIWFNPQLIGSGNSSSNERPFAVPESNVQ 506
++ N W P + +S +ER FAV ES Q
Sbjct: 271 KSRNMTWRPPS--KTEETSLSERSFAVNESEEQ 301
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.314 0.131 0.403
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,341,538
Number of Sequences: 60738
Number of extensions: 1147263
Number of successful extensions: 2079
Number of sequences better than 1.0e-05: 3
Number of HSP's better than 0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 2041
Number of HSP's gapped (non-prelim): 10
length of query: 522
length of database: 30,389,216
effective HSP length: 111
effective length of query: 411
effective length of database: 23,647,298
effective search space: 9719039478
effective search space used: 9719039478
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)