ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactVI2646.1 suspect: Pn T KOG0198 Signal transduction mechanisms MEKK and related serine/threonine protein kinases
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactVI2646.1 936756 936893 46
(46 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
SPAC1F3.02c [T] KOG0198 MEKK and related serine/threonine protei... 28 3.2
7298945 [R] KOG3780 Thioredoxin binding protein TBP-2/VDUP1 27 5.4
SPACUNK4.14 [KTDL] KOG2043 Signaling protein SWIFT and related B... 27 7.0
Hs14249452 [K] KOG2494 C3H1-type Zn-finger protein 27 7.0
YBL047c [TU] KOG0998 Synaptic vesicle protein EHS-1 and related ... 26 9.2
Hs7662118 [Z] KOG1057 Arp2/3 complex-interacting protein VIP1/As... 26 9.2
At2g41330 [O] KOG2824 Glutaredoxin-related protein 26 9.2
>SPAC1F3.02c [T] KOG0198 MEKK and related serine/threonine protein kinases
Length = 1116
Score = 27.7 bits (60), Expect = 3.2
Identities = 16/45 (35%), Positives = 24/45 (52%), Gaps = 3/45 (6%)
Query: 5 SIQQTPLSANINAPASIVKSPPSSSFTTAA---VKPAAEDALPEV 46
SI +PLS + I +SPPSS + V+P+A+D +V
Sbjct: 683 SISLSPLSYRLRKSKHIRESPPSSKVINSGNWEVRPSADDLYEDV 727
>7298945 [R] KOG3780 Thioredoxin binding protein TBP-2/VDUP1
Length = 538
Score = 26.9 bits (58), Expect = 5.4
Identities = 14/38 (36%), Positives = 24/38 (62%), Gaps = 4/38 (10%)
Query: 10 PLSANINAPASIVKSP----PSSSFTTAAVKPAAEDAL 43
P ++N+N ++ +P PSS+ TTAA++P A A+
Sbjct: 416 PTNSNMNMITNVSPTPTSSTPSSTPTTAALRPTAMPAI 453
>SPACUNK4.14 [KTDL] KOG2043 Signaling protein SWIFT and related BRCT domain
proteins
Length = 520
Score = 26.6 bits (57), Expect = 7.0
Identities = 10/35 (28%), Positives = 21/35 (59%)
Query: 2 SNSSIQQTPLSANINAPASIVKSPPSSSFTTAAVK 36
SN ++ P+S N + P+S ++ P + ++AV+
Sbjct: 243 SNREAEEAPISTNYSFPSSSLEDQPDKNVQSSAVE 277
>Hs14249452 [K] KOG2494 C3H1-type Zn-finger protein
Length = 434
Score = 26.6 bits (57), Expect = 7.0
Identities = 14/47 (29%), Positives = 25/47 (52%), Gaps = 1/47 (2%)
Query: 1 MSNSSIQQTPLSAN-INAPASIVKSPPSSSFTTAAVKPAAEDALPEV 46
+S+ ++Q P+S + APA +PP+++ AA P PE+
Sbjct: 316 LSSQALQPRPVSQQELVAPAGAPAAPPTNAAPPAAPPPPPPHLTPEI 362
>YBL047c [TU] KOG0998 Synaptic vesicle protein EHS-1 and related EH domain
proteins
Length = 1381
Score = 26.2 bits (56), Expect = 9.2
Identities = 14/39 (35%), Positives = 19/39 (47%)
Query: 3 NSSIQQTPLSANINAPASIVKSPPSSSFTTAAVKPAAED 41
N + TPLSAN +S+ + S +T A AA D
Sbjct: 232 NQPNRTTPLSANSTGVSSLTRHSTISRLSTGAFSNAASD 270
>Hs7662118 [Z] KOG1057 Arp2/3 complex-interacting protein VIP1/Asp1 involved in
regulation of actin cytoskeleton
Length = 1243
Score = 26.2 bits (56), Expect = 9.2
Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 1 MSNSSIQQTPLSANINAPASIVKSPPSS-SFTTAAVKPA 38
+ +S I + +S N PA I+ +PP++ T A+ KPA
Sbjct: 1169 LRSSPIMRKKVSLNTYTPAKILPTPPATLKSTKASSKPA 1207
>At2g41330 [O] KOG2824 Glutaredoxin-related protein
Length = 402
Score = 26.2 bits (56), Expect = 9.2
Identities = 14/45 (31%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Query: 4 SSIQQTPLSANINAPASIVKSPPSSSFT--TAAVKPAAEDALPEV 46
SS+ +T SA+ ++ SI+ SPP + F +++V A +P +
Sbjct: 3 SSVSKTASSASASSITSILNSPPETEFNIPSSSVPKAFTFPMPSI 47
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.300 0.113 0.290
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,499,543
Number of Sequences: 60738
Number of extensions: 64707
Number of successful extensions: 255
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 253
Number of HSP's gapped (non-prelim): 7
length of query: 46
length of database: 30,389,216
effective HSP length: 22
effective length of query: 24
effective length of database: 29,052,980
effective search space: 697271520
effective search space used: 697271520
T: 11
A: 40
X1: 17 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.7 bits)