ORF      STATUS       Function Best COG  Functional category                                          Pathways and functional systems
r_klactVI2660   suspect: LH   R     KOG1721  General function prediction only                               FOG: Zn-finger

BLASTP 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= r_klactVI2660 941066 939198 -623 
         (623 letters)

Database: KOG eukaryal database 04/03 
           60,738 sequences; 30,389,216 total letters

Searching..................................................done

Color Key for Alignment Scores:   


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

YLR375w [R] KOG1721 FOG: Zn-finger                                     64   9e-10
YDL048c [R] KOG1721 FOG: Zn-finger                                     59   2e-08

>YLR375w [R] KOG1721 FOG: Zn-finger
          Length = 343

 Score = 63.5 bits (153), Expect = 9e-10
 Identities = 37/135 (27%), Positives = 54/135 (39%), Gaps = 27/135 (20%)

Query: 228 PTDKSDEKKETDMKFVCHYCDAEFKMRGYLTRHIKKHAIEKAYHCPFWDASLPSE----- 282
           P D    +K T M  V  Y   +             H I+  + CPF    +  +     
Sbjct: 216 PNDDDTHEKMTPMNSVTDYAQLK-----------SLHQIKGTFKCPFNSTLIQLDMDMYP 264

Query: 283 ----------KRCHSTGGFSRRDSYKTHLRSRHFIYPDNVKNVDRVNSHGHCGRCKKHFD 332
                       CH TG FSR D++K HL++ HF YP   K  DR    G C  C   F+
Sbjct: 265 YKLKPLNFETSNCHQTGVFSRCDTFKNHLKALHFEYPPGTKKKDRNVVPGRCKHCGLKFE 324

Query: 333 STNEWIEHHIENREC 347
           + + W+  H+  ++C
Sbjct: 325 NVDVWLNEHV-GKQC 338


>YDL048c [R] KOG1721 FOG: Zn-finger
          Length = 490

 Score = 59.3 bits (142), Expect = 2e-08
 Identities = 55/208 (26%), Positives = 75/208 (35%), Gaps = 46/208 (22%)

Query: 145 KRAFAQNTSPKVNEDRETKTT--------QDITPKTDATPETGETSANDDSKTSLNDHVD 196
           +R FA+N     ++ R  K           D     D   +T  TSAN+DS  S ND + 
Sbjct: 310 QRGFARNNDLIRHKKRHWKDEFMQIYARESDNNSGADDQDDTARTSANNDSDDS-NDKL- 367

Query: 197 VIKSEDSSVGSTPEVSSGIVPVSSTDSESQVPTDKSDEKKETDMK--FVCHYCDAEFKMR 254
                                 +S+ SE      K+  K    +K  F C Y        
Sbjct: 368 ---------------------AASSSSEETKLLKKNQLKSLYKIKGAFKCPYNSTLIN-- 404

Query: 255 GYLTRHIKKHAIEKAYHCPFWDASLPSEKRCHSTGGFSRRDSYKTHLRSRHFIYPDNVKN 314
             L   +  H     Y  P           CH TG FSR D++K HL++ HF YP   K 
Sbjct: 405 --LDMEVYPHKSRSLYFEPI---------NCHQTGVFSRCDTFKNHLKALHFEYPPKTKK 453

Query: 315 VDRVNSHGHCGRCKKHFDSTNEWIEHHI 342
            DR    G C  C   F + + W+  H+
Sbjct: 454 EDRGVVPGKCKHCGLQFPNVDVWLNKHV 481


  Database: KOG eukaryal database 04/03
    Posted date:  Apr 14, 2003  1:07 PM
  Number of letters in database: 30,389,216
  Number of sequences in database:  60,738
  
Lambda     K      H
   0.312    0.127    0.371 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,432,833
Number of Sequences: 60738
Number of extensions: 1534642
Number of successful extensions: 9683
Number of sequences better than 1.0e-05: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 9678
Number of HSP's gapped (non-prelim): 5
length of query: 623
length of database: 30,389,216
effective HSP length: 112
effective length of query: 511
effective length of database: 23,586,560
effective search space: 12052732160
effective search space used: 12052732160
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)