ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactVI2720 good J KOG2241 Translation, ribosomal structure and biogenesis tRNA-binding protein
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactVI2720 960238 959123 -372
(372 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YGL105w [J] KOG2241 tRNA-binding protein 399 e-111
SPAC30C2.04 [J] KOG2241 tRNA-binding protein 195 8e-50
Hs4758266 [J] KOG2241 tRNA-binding protein 152 8e-37
7303976 [J] KOG2241 tRNA-binding protein 143 4e-34
At4g13780_2 [J] KOG2241 tRNA-binding protein 139 9e-33
Hs4507947_2 [J] KOG2241 tRNA-binding protein 138 1e-32
CE06007_2 [J] KOG2241 tRNA-binding protein 134 2e-31
7294108_2 [J] KOG2241 tRNA-binding protein 127 3e-29
At3g59980 [J] KOG2241 tRNA-binding protein 124 2e-28
At2g40660 [J] KOG2241 tRNA-binding protein 103 5e-22
>YGL105w [J] KOG2241 tRNA-binding protein
Length = 376
Score = 399 bits (1024), Expect = e-111
Identities = 216/375 (57%), Positives = 243/375 (64%), Gaps = 7/375 (1%)
Query: 4 DLLNKFEALSISA--PSLTQEQKALEAQWDSVAKSGNIQGSFEELNLHLRDHTFVLGTAQ 61
DL+ KFE+L IS S T+EQ A AQW+SV KSG IQ ++LNL LRD+TF++ T
Sbjct: 3 DLVTKFESLIISKYPVSFTKEQSAQAAQWESVLKSGQIQPHLDQLNLVLRDNTFIVSTLY 62
Query: 62 PTVSDVTLFEHVLPVAKELINSSKDVKGNYAKYRHILRWSQYXXXXXXXXXXXXXXXXXX 121
PT +DV +FE LP+ K+L+ SSKDVK Y YRHILRW Y
Sbjct: 63 PTSTDVHVFEVALPLIKDLVASSKDVKSTYTTYRHILRWIDYMQNLLEVSSTDKLEINHD 122
Query: 122 ---PREVIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQPRGKPDEETLXXXXXXXXXX 178
P EVI PRGKPDEETL
Sbjct: 123 LDLPHEVIEKKKKAPAGGAADAAAKADEDVSKKAKKQD-HPRGKPDEETLKKLREEAKAK 181
Query: 179 XXXXXXXXXXXXXXXXXXX-XXPSPGVIDFRVGFIQKAIKHPDADSLYVSTIDVGDEEGP 237
P P IDFRVGFIQKAIKHPDADSLYVSTIDVGDEEGP
Sbjct: 182 KAAKKAANAKQQQEQQNKAPEKPKPSAIDFRVGFIQKAIKHPDADSLYVSTIDVGDEEGP 241
Query: 238 RTVCSGLVKYFPLEAMQERYVVVVCNLKPVNMRGIKSTAMVLCGSDENNVEFVEPPAGSK 297
RTVCSGLVK+FPL+AMQERYVVVVCNLKPVNMRGIKSTAMVLCGS+++ VEFVEPP SK
Sbjct: 242 RTVCSGLVKHFPLDAMQERYVVVVCNLKPVNMRGIKSTAMVLCGSNDDKVEFVEPPKDSK 301
Query: 298 AGDKVFFEGFGDEEPIKQLNPKKKIWEQLQPHFSTNEQLEVIFKDEDDKAQQIRKLTNKN 357
AGDKVFFEGFGDE P+KQLNPKKKIWE LQPHF+TN+ LEVIFKDE++K +RKLTN
Sbjct: 302 AGDKVFFEGFGDEAPMKQLNPKKKIWEHLQPHFTTNDGLEVIFKDEEEKDHPVRKLTNAK 361
Query: 358 GDAFKVASIANACVR 372
G++FKVASIANA VR
Sbjct: 362 GESFKVASIANAQVR 376
>SPAC30C2.04 [J] KOG2241 tRNA-binding protein
Length = 450
Score = 195 bits (496), Expect = 8e-50
Identities = 95/146 (65%), Positives = 114/146 (78%), Gaps = 2/146 (1%)
Query: 200 PSPGVIDFRVGFIQKAIKHPDADSLYVSTIDVGDEEGPRTVCSGLVKYFPLEAMQERYVV 259
P P +IDFR+GFI+KA+KHP+ADSLYVSTI GD EGPRTVCSGLVKY PLE MQ+R V+
Sbjct: 277 PVPSMIDFRIGFIEKAVKHPNADSLYVSTIHCGDAEGPRTVCSGLVKYIPLEQMQQRKVI 336
Query: 260 VVCNLKPVNMRGIKSTAMVLCGS--DENNVEFVEPPAGSKAGDKVFFEGFGDEEPIKQLN 317
VV NLKPVNMR +KS AMV C S D++ VEFV PP ++ GD++ FEGF EEP QLN
Sbjct: 337 VVANLKPVNMRSVKSQAMVFCASSPDKSVVEFVLPPENAEIGDRLTFEGFDTEEPEAQLN 396
Query: 318 PKKKIWEQLQPHFSTNEQLEVIFKDE 343
PK+KIWE +QP F++ E L +KDE
Sbjct: 397 PKRKIWEAIQPGFTSGEDLICGYKDE 422
>Hs4758266 [J] KOG2241 tRNA-binding protein
Length = 312
Score = 152 bits (384), Expect = 8e-37
Identities = 75/137 (54%), Positives = 94/137 (67%), Gaps = 2/137 (1%)
Query: 205 IDFRVGFIQKAIKHPDADSLYVSTIDVGDEEGPRTVCSGLVKYFPLEAMQERYVVVVCNL 264
+D R+G I A KHPDADSLYV +DVG E PRTV SGLV + PLE MQ R V+++CNL
Sbjct: 155 LDLRIGCIITARKHPDADSLYVEEVDVG-EIAPRTVVSGLVNHVPLEQMQNRMVILLCNL 213
Query: 265 KPVNMRGIKSTAMVLCGSDENNVEFVEPPAGSKAGDKVFFEGFGDEEPIKQLNPKKKIWE 324
KP MRG+ S AMV+C S +E + PP GS GD++ F+ F EP K+LNPKKKIWE
Sbjct: 214 KPAKMRGVLSQAMVMCASSPEKIEILAPPNGSVPGDRITFDAF-PGEPDKELNPKKKIWE 272
Query: 325 QLQPHFSTNEQLEVIFK 341
Q+QP TN++ +K
Sbjct: 273 QIQPDLHTNDECVATYK 289
>7303976 [J] KOG2241 tRNA-binding protein
Length = 294
Score = 143 bits (361), Expect = 4e-34
Identities = 76/139 (54%), Positives = 91/139 (64%), Gaps = 2/139 (1%)
Query: 203 GVIDFRVGFIQKAIKHPDADSLYVSTIDVGDEEGPRTVCSGLVKYFPLEAMQERYVVVVC 262
G +D RVG I + +HPDADSLY+ ID G E PRTV SGLVK+ PLE MQ R VVV+C
Sbjct: 135 GRLDLRVGKIVEVGRHPDADSLYLEKIDCG-EAAPRTVVSGLVKFVPLEEMQNRLVVVMC 193
Query: 263 NLKPVNMRGIKSTAMVLCGSDENNVEFVEPPAGSKAGDKVFFEGFGDEEPIKQLNPKKKI 322
NLKP MRG+ S AMV+C S VE + PPAG+ GD V EG+ +P QLNPKKKI
Sbjct: 194 NLKPAKMRGVTSEAMVMCASTPEKVEVLSPPAGAVPGDLVHCEGY-PRQPDAQLNPKKKI 252
Query: 323 WEQLQPHFSTNEQLEVIFK 341
+E P TN +L +K
Sbjct: 253 FESCAPDLKTNGELVACYK 271
>At4g13780_2 [J] KOG2241 tRNA-binding protein
Length = 166
Score = 139 bits (349), Expect = 9e-33
Identities = 87/170 (51%), Positives = 101/170 (59%), Gaps = 13/170 (7%)
Query: 205 IDFRVGFIQKAIKHPDADSLYVSTIDVGDEEGPRTVCSGLVKYFPLEAMQERYVVVVCNL 264
+D RVG I KA KHP AD+LYV IDVG E RTV SGLVKY PLE MQ R V V+CNL
Sbjct: 8 LDIRVGKIVKAEKHPKADALYVEEIDVGGGE-IRTVVSGLVKYIPLEEMQNRMVCVLCNL 66
Query: 265 KPVNMRGIKSTAMVLC--GSDENNVEFVEPPAGSKAGDKVFFEGFGDEEPIKQLNPKKKI 322
KP MR I S AMVL SD + VE VEPP + G++V F GF + EP LNPKKK+
Sbjct: 67 KPAKMRDIVSQAMVLAASSSDGSKVELVEPPKTANIGERVTFPGF-EGEPDDVLNPKKKV 125
Query: 323 WEQLQPHFSTNEQLEVIFKDEDDKAQQIRKLTNKNGDAFKVASIANACVR 372
WE L +T E L +KD T G KV+SI+N +R
Sbjct: 126 WETLLVDLNTKENLVACYKDV--------PFTTSAG-VCKVSSISNGTIR 166
>Hs4507947_2 [J] KOG2241 tRNA-binding protein
Length = 172
Score = 138 bits (348), Expect = 1e-32
Identities = 72/137 (52%), Positives = 95/137 (68%), Gaps = 4/137 (2%)
Query: 202 PGVIDFRVGFIQKAIKHPDADSLYVSTIDVGDEEGPRTVCSGLVKYFPLEAMQERYVVVV 261
P +D RVG I KHPDADSLYV IDVG+ E PRTV SGLV++ P E +Q+R VVV+
Sbjct: 9 PSRLDIRVGKIITVEKHPDADSLYVEKIDVGEAE-PRTVVSGLVQFVPKEELQDRLVVVL 67
Query: 262 CNLKPVNMRGIKSTAMVLCGSDE---NNVEFVEPPAGSKAGDKVFFEGFGDEEPIKQLNP 318
CNLKP MRG++S M+LC S E VE ++PPAGS G+ VF +G+ +P ++L P
Sbjct: 68 CNLKPQKMRGVESQGMLLCASIEGINRQVEPLDPPAGSAPGEHVFVKGYEKGQPDEELKP 127
Query: 319 KKKIWEQLQPHFSTNEQ 335
KKK++E+LQ F +E+
Sbjct: 128 KKKVFEKLQADFKISEE 144
>CE06007_2 [J] KOG2241 tRNA-binding protein
Length = 163
Score = 134 bits (337), Expect = 2e-31
Identities = 71/122 (58%), Positives = 84/122 (68%), Gaps = 2/122 (1%)
Query: 203 GVIDFRVGFIQKAIKHPDADSLYVSTIDVGDEEGPRTVCSGLVKYFPLEAMQERYVVVVC 262
G +D RVG I K KHPDAD+LYV IDVG E PRTV SGLV++ PL+ MQ R VVV+C
Sbjct: 4 GRLDMRVGRIIKCEKHPDADALYVEQIDVG-ESAPRTVVSGLVRHVPLDQMQNRLVVVLC 62
Query: 263 NLKPVNMRGIKSTAMVLCGSDENNVEFVEPPAGSKAGDKVFFEGFGDEEPIKQLNPKKKI 322
NLKP MRG++S AMV+C S + VE +E PA SK G V + P +QLNPKKKI
Sbjct: 63 NLKPAKMRGVESRAMVMCASSPDKVEIMEVPADSKPGTPVVCPPY-THRPDEQLNPKKKI 121
Query: 323 WE 324
WE
Sbjct: 122 WE 123
>7294108_2 [J] KOG2241 tRNA-binding protein
Length = 160
Score = 127 bits (319), Expect = 3e-29
Identities = 71/154 (46%), Positives = 96/154 (62%), Gaps = 4/154 (2%)
Query: 205 IDFRVGFIQKAIKHPDADSLYVSTIDVGDEEGPRTVCSGLVKYFPLEAMQERYVVVVCNL 264
+D RVG + + +HPDAD+LYV ID+ + + PRT+ SGLVK+ E + +R V V+CNL
Sbjct: 2 LDIRVGKVVEVARHPDADTLYVLKIDLAEAQ-PRTIISGLVKFVTEEELNQRLVAVLCNL 60
Query: 265 KPVNMRGIKSTAMVLCGS--DENNVEFVEPPAGSKAGDKVFFEGFGDEEPIKQLNPKKKI 322
KP MRGI S MVLC S D VE + PA + AG ++ FEGF P +QLNPKKK+
Sbjct: 61 KPSKMRGILSEGMVLCTSNADHTVVEPIVLPATATAGSRLSFEGFSG-TPDEQLNPKKKV 119
Query: 323 WEQLQPHFSTNEQLEVIFKDEDDKAQQIRKLTNK 356
WE+L F TN ++KD + KL++K
Sbjct: 120 WEKLSADFKTNSDGLAVWKDNFLLTPEGEKLSSK 153
>At3g59980 [J] KOG2241 tRNA-binding protein
Length = 273
Score = 124 bits (311), Expect = 2e-28
Identities = 69/140 (49%), Positives = 92/140 (65%), Gaps = 14/140 (10%)
Query: 204 VIDFRVGFIQKAIKHPDADSLYVSTIDVGDEEGPRTVCSGLVKYFPLEAMQERYVVVVCN 263
++D +VG I KA +H +ADSLYV +D+G+ E PR +CSGLVKY PL+ +Q VVV+ N
Sbjct: 108 LLDIKVGRIVKAWQHEEADSLYVEEVDIGEAE-PRIICSGLVKYVPLDLLQGASVVVLAN 166
Query: 264 LKPVNMRGIKSTAMVLCGSD--ENNVEFVEPPAGSKAGDKVFFEGFGDEEPIKQLN---- 317
LKP NMRG+KS M+L SD NVE + PP GS GD+V+ FG+EE ++QL
Sbjct: 167 LKPRNMRGVKSCGMLLAASDAAHENVELLVPPEGSVPGDRVW---FGNEEDLEQLPEPAP 223
Query: 318 ----PKKKIWEQLQPHFSTN 333
KKK+WE +QP T+
Sbjct: 224 PNKVQKKKMWELVQPLLKTD 243
>At2g40660 [J] KOG2241 tRNA-binding protein
Length = 440
Score = 103 bits (256), Expect = 5e-22
Identities = 60/143 (41%), Positives = 88/143 (60%), Gaps = 4/143 (2%)
Query: 201 SPGVIDFRVGFIQKAIKHPDADSLYVSTIDVGDEEGPRTVCSGLVKYFPLEAMQERYVVV 260
S +++ +VG I+KA KHP ADSL V IDVG+++ R V SGL K+ E + R V +
Sbjct: 279 SVSLLNIQVGLIRKAWKHPSADSLLVEEIDVGEDK-VRQVVSGLAKFCSPEDLTNRLVAL 337
Query: 261 VCNLKPVNMRGIKSTAMVLCGSDENN--VEFVEPPAGSKAGDKVFFEGFGDEEPIKQLNP 318
+ N+KP +R + S +VLC S E++ VE + PPAG+K G++V F G + +P LNP
Sbjct: 338 ITNVKPGKLRDVMSQGLVLCASSEDHSVVEPLLPPAGAKPGERVSFSGI-EGKPEDVLNP 396
Query: 319 KKKIWEQLQPHFSTNEQLEVIFK 341
KKK E++ P T+E +K
Sbjct: 397 KKKQLEKITPGLYTDENGVATYK 419
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.316 0.134 0.391
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,770,693
Number of Sequences: 60738
Number of extensions: 734767
Number of successful extensions: 1859
Number of sequences better than 1.0e-05: 10
Number of HSP's better than 0.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1828
Number of HSP's gapped (non-prelim): 10
length of query: 372
length of database: 30,389,216
effective HSP length: 108
effective length of query: 264
effective length of database: 23,829,512
effective search space: 6290991168
effective search space used: 6290991168
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)