ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactVI2746 check: MH A KOG0334 RNA processing and modification RNA helicase
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactVI2746 969174 966739 -812
(812 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YBR237w [A] KOG0334 RNA helicase 619 e-177
SPCC10H11.01 [A] KOG0334 RNA helicase 386 e-107
At1g20920 [A] KOG0334 RNA helicase 305 2e-82
At3g09620 [A] KOG0334 RNA helicase 302 2e-81
Hs7662318 [A] KOG0334 RNA helicase 296 7e-80
7293060 [A] KOG0334 RNA helicase 293 7e-79
CE28031 [A] KOG0334 RNA helicase 280 8e-75
CE27427 [A] KOG0334 RNA helicase 280 8e-75
At2g47330 [A] KOG0339 ATP-dependent RNA helicase 273 8e-73
At5g63120 [A] KOG0331 ATP-dependent RNA helicase 253 1e-66
SPBP8B7.16c [A] KOG0331 ATP-dependent RNA helicase 251 3e-66
At1g55150 [A] KOG0331 ATP-dependent RNA helicase 246 1e-64
7294797 [A] KOG0339 ATP-dependent RNA helicase 245 2e-64
YNL112w [A] KOG0331 ATP-dependent RNA helicase 240 7e-63
CE17559 [A] KOG0339 ATP-dependent RNA helicase 237 6e-62
Hs4758138 [A] KOG0331 ATP-dependent RNA helicase 236 1e-61
7295314 [A] KOG0331 ATP-dependent RNA helicase 231 3e-60
Hs5453840_1 [A] KOG0331 ATP-dependent RNA helicase 230 6e-60
CE18785 [A] KOG0331 ATP-dependent RNA helicase 227 5e-59
Hs11321632 [A] KOG0339 ATP-dependent RNA helicase 221 3e-57
7290853 [A] KOG0331 ATP-dependent RNA helicase 217 5e-56
7296646 [A] KOG0331 ATP-dependent RNA helicase 213 7e-55
CE26887 [A] KOG0333 U5 snRNP-like RNA helicase subunit 209 1e-53
CE24878 [A] KOG0333 U5 snRNP-like RNA helicase subunit 209 1e-53
7298989 [A] KOG0336 ATP-dependent RNA helicase 207 4e-53
Hs4759278 [A] KOG0333 U5 snRNP-like RNA helicase subunit 204 3e-52
Hs17474597 [A] KOG0333 U5 snRNP-like RNA helicase subunit 204 3e-52
SPCC63.11 [A] KOG0333 U5 snRNP-like RNA helicase subunit 204 6e-52
At2g33730 [A] KOG0333 U5 snRNP-like RNA helicase subunit 203 8e-52
ECU08g1080 [A] KOG0331 ATP-dependent RNA helicase 202 2e-51
7298459 [A] KOG0333 U5 snRNP-like RNA helicase subunit 197 4e-50
At3g58570 [A] KOG0335 ATP-dependent RNA helicase 196 9e-50
At2g42520 [A] KOG0335 ATP-dependent RNA helicase 195 2e-49
YPL119c [A] KOG0335 ATP-dependent RNA helicase 194 3e-49
At5g51280 [A] KOG0341 DEAD-box protein abstrakt 193 1e-48
At3g06480 [A] KOG0331 ATP-dependent RNA helicase 192 2e-48
Hs22057246 [A] KOG0336 ATP-dependent RNA helicase 190 9e-48
YOR204w [A] KOG0335 ATP-dependent RNA helicase 189 1e-47
Hs13514813 [A] KOG0335 ATP-dependent RNA helicase 187 4e-47
Hs10346129 [A] KOG0336 ATP-dependent RNA helicase 186 1e-46
At3g01540 [A] KOG0331 ATP-dependent RNA helicase 186 1e-46
Hs13514809 [A] KOG0335 ATP-dependent RNA helicase 185 3e-46
7299061 [A] KOG0335 ATP-dependent RNA helicase 185 3e-46
SPCC1795.11 [A] KOG0335 ATP-dependent RNA helicase 183 8e-46
At3g58510 [A] KOG0335 ATP-dependent RNA helicase 183 8e-46
At4g33370 [A] KOG0341 DEAD-box protein abstrakt 183 1e-45
CE23832 [A] KOG0341 DEAD-box protein abstrakt 182 1e-45
7296891 [A] KOG0341 DEAD-box protein abstrakt 182 2e-45
CE22474 [A] KOG0336 ATP-dependent RNA helicase 181 3e-45
At5g14610 [A] KOG0331 ATP-dependent RNA helicase 181 3e-45
CE28369 [A] KOG0335 ATP-dependent RNA helicase 180 7e-45
CE24451 [A] KOG0335 ATP-dependent RNA helicase 180 7e-45
Hs21071032 [A] KOG0341 DEAD-box protein abstrakt 179 2e-44
YLL008w [A] KOG0338 ATP-dependent RNA helicase 178 3e-44
7298204 [A] KOG0335 ATP-dependent RNA helicase 177 8e-44
SPBC17D1.06 [A] KOG0331 ATP-dependent RNA helicase 173 8e-43
YDR243c [A] KOG0333 U5 snRNP-like RNA helicase subunit 172 1e-42
At1g31970 [A] KOG0331 ATP-dependent RNA helicase 171 3e-42
YGL171w [A] KOG0344 ATP-dependent RNA helicase 169 1e-41
SPAC823.08c [A] KOG0330 ATP-dependent RNA helicase 167 8e-41
Hs9507237 [A] KOG0335 ATP-dependent RNA helicase 167 8e-41
7293941 [A] KOG0344 ATP-dependent RNA helicase 166 1e-40
Hs13775232 [A] KOG0331 ATP-dependent RNA helicase 166 1e-40
SPAC1F7.02c [A] KOG0342 ATP-dependent RNA helicase pitchoune 166 2e-40
Hs20149629 [A] KOG0330 ATP-dependent RNA helicase 165 2e-40
7291960_2 [A] KOG0337 ATP-dependent RNA helicase 163 9e-40
CE27553 [A] KOG0337 ATP-dependent RNA helicase 163 1e-39
YMR290c [A] KOG0342 ATP-dependent RNA helicase pitchoune 162 3e-39
SPAC30D11.03 [A] KOG0338 ATP-dependent RNA helicase 162 3e-39
CE00337 [A] KOG0330 ATP-dependent RNA helicase 161 4e-39
7298752 [A] KOG0330 ATP-dependent RNA helicase 160 6e-39
SPAC31A2.07c [A] KOG0337 ATP-dependent RNA helicase 159 1e-38
Hs19923595 [A] KOG0337 ATP-dependent RNA helicase 158 3e-38
7304081 [A] KOG0338 ATP-dependent RNA helicase 158 4e-38
SPAC1093.05 [A] KOG0343 RNA Helicase 157 6e-38
Hs17505907 [A] KOG0348 ATP-dependent RNA helicase 156 1e-37
7299006 [A] KOG0345 ATP-dependent RNA helicase 156 1e-37
Hs19743937 [A] KOG0338 ATP-dependent RNA helicase 155 2e-37
At1g77050 [A] KOG0337 ATP-dependent RNA helicase 155 2e-37
YGL078c [A] KOG0331 ATP-dependent RNA helicase 155 2e-37
YHR065c [A] KOG0330 ATP-dependent RNA helicase 154 5e-37
At3g18600 [A] KOG0342 ATP-dependent RNA helicase pitchoune 153 1e-36
CE27030 [A] KOG0338 ATP-dependent RNA helicase 152 3e-36
CE07736 [A] KOG0335 ATP-dependent RNA helicase 150 8e-36
Hs15316941 [A] KOG0344 ATP-dependent RNA helicase 149 1e-35
At5g65900 [A] KOG0342 ATP-dependent RNA helicase pitchoune 149 1e-35
At3g22330 [A] KOG0331 ATP-dependent RNA helicase 148 3e-35
At5g05450 [A] KOG0345 ATP-dependent RNA helicase 147 5e-35
At1g16280 [A] KOG0340 ATP-dependent RNA helicase 147 6e-35
CE09901 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 in... 147 8e-35
SPAC22F3.08c [A] KOG0344 ATP-dependent RNA helicase 146 1e-34
SPAC1F5.10 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1... 146 1e-34
At3g22310 [A] KOG0331 ATP-dependent RNA helicase 146 1e-34
At3g09720 [A] KOG0344 ATP-dependent RNA helicase 146 1e-34
At3g19760 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 ... 145 2e-34
At5g08610 [A] KOG0342 ATP-dependent RNA helicase pitchoune 145 3e-34
Hs7661920 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 ... 144 4e-34
SPBC543.06c [A] KOG0340 ATP-dependent RNA helicase 144 5e-34
ECU02g0670 [A] KOG0335 ATP-dependent RNA helicase 144 5e-34
At5g60990 [A] KOG0330 ATP-dependent RNA helicase 143 9e-34
YDL160c [A] KOG0326 ATP-dependent RNA helicase 142 2e-33
ECU09g1640 [A] KOG0326 ATP-dependent RNA helicase 142 2e-33
CE26853 [A] KOG0342 ATP-dependent RNA helicase pitchoune 142 2e-33
At5g63630 [A] KOG0342 ATP-dependent RNA helicase pitchoune 142 2e-33
CE01341 [J] KOG0327 Translation initiation factor 4F helicase su... 141 4e-33
Hs13787206 [A] KOG0342 ATP-dependent RNA helicase pitchoune 141 5e-33
YDL031w [A] KOG0337 ATP-dependent RNA helicase 140 6e-33
YJL033w [A] KOG0343 RNA Helicase 140 8e-33
7297629 [A] KOG0326 ATP-dependent RNA helicase 140 8e-33
At1g71370 [A] KOG0345 ATP-dependent RNA helicase 140 1e-32
7299019 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 in... 140 1e-32
At5g08620 [A] KOG0342 ATP-dependent RNA helicase pitchoune 139 2e-32
YHR169w [A] KOG0340 ATP-dependent RNA helicase 138 3e-32
7302399 [A] KOG0347 RNA helicase 138 4e-32
CE09012 [A] KOG0335 ATP-dependent RNA helicase 137 7e-32
7300808 [A] KOG0342 ATP-dependent RNA helicase pitchoune 137 7e-32
Hs13514831 [A] KOG0343 RNA Helicase 136 1e-31
CE25531 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 in... 136 1e-31
Hs13787209 [A] KOG0331 ATP-dependent RNA helicase 135 3e-31
YKR059w [J] KOG0327 Translation initiation factor 4F helicase su... 134 4e-31
YJL138c [J] KOG0327 Translation initiation factor 4F helicase su... 134 4e-31
CE25121 [A] KOG0335 ATP-dependent RNA helicase 134 6e-31
SPBC776.09 [A] KOG0326 ATP-dependent RNA helicase 132 2e-30
Hs4503529 [J] KOG0327 Translation initiation factor 4F helicase ... 132 2e-30
At2g45810 [A] KOG0326 ATP-dependent RNA helicase 132 2e-30
7297048 [J] KOG0327 Translation initiation factor 4F helicase su... 132 2e-30
At3g61240 [A] KOG0326 ATP-dependent RNA helicase 132 3e-30
7293348 [A] KOG0348 ATP-dependent RNA helicase 132 3e-30
CE11402 [A] KOG0334 RNA helicase 131 4e-30
At1g63250 [A] KOG0342 ATP-dependent RNA helicase pitchoune 131 5e-30
Hs4758140 [A] KOG0326 ATP-dependent RNA helicase 130 6e-30
7303950 [A] KOG0340 ATP-dependent RNA helicase 130 8e-30
CE25231 [A] KOG0343 RNA Helicase 130 1e-29
At5g54910 [A] KOG0343 RNA Helicase 129 2e-29
At4g09730 [A] KOG0331 ATP-dependent RNA helicase 128 3e-29
Hs8922976 [A] KOG0330 ATP-dependent RNA helicase 127 5e-29
Hs20336298 [A] KOG0348 ATP-dependent RNA helicase 127 7e-29
ECU10g0440 [A] KOG0330 ATP-dependent RNA helicase 127 7e-29
CE11190 [A] KOG0347 RNA helicase 127 7e-29
At1g71280 [A] KOG0345 ATP-dependent RNA helicase 127 7e-29
SPAC1006.07 [J] KOG0327 Translation initiation factor 4F helicas... 127 9e-29
Hs13129006 [A] KOG0331 ATP-dependent RNA helicase 127 9e-29
YOR046c [A] KOG0332 ATP-dependent RNA helicase 126 1e-28
YDR021w [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 in... 126 1e-28
7293369 [A] KOG0343 RNA Helicase 126 2e-28
Hs4503531 [J] KOG0327 Translation initiation factor 4F helicase ... 125 2e-28
ECU10g1680 [A] KOG0343 RNA Helicase 125 3e-28
At3g16840 [A] KOG0347 RNA helicase 125 3e-28
CE06239 [A] KOG0344 ATP-dependent RNA helicase 124 6e-28
7290730 [A] KOG0331 ATP-dependent RNA helicase 124 8e-28
CE00839 [A] KOG0326 ATP-dependent RNA helicase 123 1e-27
At2g07750 [A] KOG0342 ATP-dependent RNA helicase pitchoune 123 1e-27
SPBC4F6.07c [A] KOG0347 RNA helicase 123 1e-27
At5g62190 [A] KOG0331 ATP-dependent RNA helicase 122 2e-27
YFL002c [A] KOG0345 ATP-dependent RNA helicase 122 2e-27
At2g40700 [A] KOG0348 ATP-dependent RNA helicase 122 2e-27
Hs9506609 [A] KOG0340 ATP-dependent RNA helicase 122 3e-27
YBR142w [A] KOG0347 RNA helicase 121 5e-27
SPAC17G6.14c [A] KOG0329 ATP-dependent RNA helicase 120 6e-27
At1g51380 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 ... 120 6e-27
At1g54270 [J] KOG0327 Translation initiation factor 4F helicase ... 119 1e-26
CE23814 [A] KOG0340 ATP-dependent RNA helicase 119 2e-26
CE27336 [A] KOG0334 RNA helicase 118 3e-26
YDR194c [A] KOG0342 ATP-dependent RNA helicase pitchoune 117 5e-26
7294824 [K] KOG4284 DEAD box protein 117 7e-26
At4g00660 [A] KOG0326 ATP-dependent RNA helicase 117 9e-26
YDL084w [A] KOG0329 ATP-dependent RNA helicase 116 1e-25
At3g53110 [A] KOG0332 ATP-dependent RNA helicase 116 1e-25
At3g13920 [J] KOG0327 Translation initiation factor 4F helicase ... 116 2e-25
ECU10g0690 [A] KOG0345 ATP-dependent RNA helicase 115 3e-25
SPBC12C2.06 [A] KOG0332 ATP-dependent RNA helicase 114 5e-25
SPBC21H7.04 [A] KOG0348 ATP-dependent RNA helicase 114 6e-25
At1g72730 [J] KOG0327 Translation initiation factor 4F helicase ... 113 1e-24
Hs4758112 [A] KOG0329 ATP-dependent RNA helicase 112 2e-24
Hs21040371 [A] KOG0329 ATP-dependent RNA helicase 112 2e-24
CE03821 [A] KOG0345 ATP-dependent RNA helicase 112 3e-24
Hs20551983 [A] KOG0345 ATP-dependent RNA helicase 109 1e-23
7295505 [A] KOG0346 RNA helicase 109 1e-23
At5g11170 [A] KOG0329 ATP-dependent RNA helicase 109 2e-23
SPBC691.04 [A] KOG0342 ATP-dependent RNA helicase pitchoune 108 3e-23
At5g11200 [A] KOG0329 ATP-dependent RNA helicase 108 3e-23
At4g16630 [A] KOG0338 ATP-dependent RNA helicase 108 3e-23
7296990 [A] KOG0329 ATP-dependent RNA helicase 108 4e-23
CE03025 [A] KOG0329 ATP-dependent RNA helicase 105 2e-22
Hs9966805 [A] KOG0347 RNA helicase 105 3e-22
Hs22054507 [A] KOG0342 ATP-dependent RNA helicase pitchoune 105 4e-22
CE29052 [A] KOG0335 ATP-dependent RNA helicase 105 4e-22
Hs9506931 [A] KOG0346 RNA helicase 104 6e-22
CE27728 [A] KOG0346 RNA helicase 104 6e-22
At4g34910 [A] KOG0346 RNA helicase 103 8e-22
SPBC24C6.02 [A] KOG0345 ATP-dependent RNA helicase 103 1e-21
SPCC1494.06c [A] KOG0346 RNA helicase 102 2e-21
YLR276c [A] KOG0346 RNA helicase 100 7e-21
Hs21327697 [A] KOG0332 ATP-dependent RNA helicase 100 1e-20
ECU02g1520 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1... 100 1e-20
HsM7019399 [A] KOG0332 ATP-dependent RNA helicase 99 3e-20
CE26264 [A] KOG0335 ATP-dependent RNA helicase 97 1e-19
At1g12770_1 [J] KOG0327 Translation initiation factor 4F helicas... 97 1e-19
YKR024c [A] KOG0348 ATP-dependent RNA helicase 96 2e-19
Hs14251212 [K] KOG4284 DEAD box protein 96 2e-19
CE29051 [A] KOG0335 ATP-dependent RNA helicase 93 2e-18
Hs17474878 [A] KOG0333 U5 snRNP-like RNA helicase subunit 91 9e-18
At3g06980 [A] KOG0331 ATP-dependent RNA helicase 91 9e-18
CE18221 [A] KOG0332 ATP-dependent RNA helicase 88 5e-17
CE18220 [A] KOG0332 ATP-dependent RNA helicase 88 5e-17
CE18219 [A] KOG0332 ATP-dependent RNA helicase 88 5e-17
ECU09g1200 [J] KOG0327 Translation initiation factor 4F helicase... 87 1e-16
CE28485 [K] KOG4284 DEAD box protein 87 1e-16
Hs4826688 [J] KOG0327 Translation initiation factor 4F helicase ... 87 1e-16
CE01338 [J] KOG0327 Translation initiation factor 4F helicase su... 87 1e-16
Hs8922886 [A] KOG0332 ATP-dependent RNA helicase 86 2e-16
Hs6005743 [A] KOG0332 ATP-dependent RNA helicase 86 2e-16
ECU05g1270 [A] KOG0331 ATP-dependent RNA helicase 84 1e-15
ECU06g1250 [A] KOG0337 ATP-dependent RNA helicase 82 3e-15
SPCC285.03 [A] KOG0350 DEAD-box ATP-dependent RNA helicase 81 6e-15
7296165 [A] KOG0330 ATP-dependent RNA helicase 80 2e-14
Hs18595975 [A] KOG0335 ATP-dependent RNA helicase 77 8e-14
CE00456 [A] KOG0350 DEAD-box ATP-dependent RNA helicase 75 5e-13
7296530 [A] KOG0349 Putative DEAD-box RNA helicase DDX1 75 5e-13
YNR038w [A] KOG0350 DEAD-box ATP-dependent RNA helicase 74 9e-13
7294064 [A] KOG0350 DEAD-box ATP-dependent RNA helicase 73 2e-12
YGL064c [A] KOG0335 ATP-dependent RNA helicase 72 3e-12
CE27320 [A] KOG0335 ATP-dependent RNA helicase 71 6e-12
Hs4826686 [A] KOG0349 Putative DEAD-box RNA helicase DDX1 70 1e-11
Hs21040373 [A] KOG0329 ATP-dependent RNA helicase 69 3e-11
At4g15850 [A] KOG0350 DEAD-box ATP-dependent RNA helicase 67 1e-10
Hs17475661 [J] KOG0327 Translation initiation factor 4F helicase... 63 2e-09
Hs22070384 [A] KOG0342 ATP-dependent RNA helicase pitchoune 60 2e-08
YMR190c [L] KOG0351 ATP-dependent DNA helicase 58 5e-08
Hs20548087 [J] KOG0327 Translation initiation factor 4F helicase... 58 7e-08
Hs4759032 [L] KOG0352 ATP-dependent DNA helicase 57 1e-07
SPAC212.11 [L] KOG0351 ATP-dependent DNA helicase 55 3e-07
CE28975 [A] KOG0335 ATP-dependent RNA helicase 54 1e-06
7299503 [L] KOG0351 ATP-dependent DNA helicase 51 8e-06
>YBR237w [A] KOG0334 RNA helicase
Length = 849
Score = 619 bits (1597), Expect = e-177
Identities = 331/634 (52%), Positives = 422/634 (66%), Gaps = 29/634 (4%)
Query: 206 KCLYREPNDLGLMSEKDVEELRLSLDNIKISGKDCPKPVTKWSQLGLSSEIMDLISNELQ 265
K Y E + MSE +VEELRLSLDNIKI G CPKPVTKWSQLGLS++ M LI+ +L
Sbjct: 216 KNFYIESETVSSMSEMEVEELRLSLDNIKIKGTGCPKPVTKWSQLGLSTDTMVLITEKLH 275
Query: 266 FVTLTPIQCQAIPAIMSGRDVIGISKTGSGKTVAFLLPLVRQIKAQPPLAPDETGPIGLI 325
F +LTPIQ QA+PAIMSGRDVIGISKTGSGKT+++LLPL+RQ+KAQ PL+ ETGP+GLI
Sbjct: 276 FGSLTPIQSQALPAIMSGRDVIGISKTGSGKTISYLLPLLRQVKAQRPLSKHETGPMGLI 335
Query: 326 LTPTRELAVQIQEEALKFCKXXXXXXXXX-XXXXELKQQINELKRGVDIIVATPGRFIDL 384
L PTRELA+QI EE KF + E+K+QI +LKRG +I+VATPGRFID+
Sbjct: 336 LAPTRELALQIHEEVTKFTEADTSIRSVCCTGGSEMKKQITDLKRGTEIVVATPGRFIDI 395
Query: 385 MTLNSGHLLSPTRISFVVMDEADRLFDLGFGPQVNQIMGCIRPDKQCVLFSATFPSKLKH 444
+TLN G LLS RI+FVVMDEADRLFDLGF PQ+ QIM +RPDKQCVLFSATFP+KL+
Sbjct: 396 LTLNDGKLLSTKRITFVVMDEADRLFDLGFEPQITQIMKTVRPDKQCVLFSATFPNKLRS 455
Query: 445 FASRTLKNPIQITINSKSLINENIQQRVQIFDEEHVKFEFLLKRLSDRLAL-------HR 497
FA R L +PI ITINSK ++NEN++Q+ +I E KF+ L++ + +R +
Sbjct: 456 FAVRVLHSPISITINSKGMVNENVKQKFRICHSEDEKFDNLVQLIHERSEFFDEVQSEND 515
Query: 498 GE-------DEKTIIFVGSQQXXXXXXXXXXXNGITTFPIHAGKPSAERLRNLQKFKETD 550
G+ D K IIFV SQ GI T IHAGKP ERL NL+KFK
Sbjct: 516 GQSSDVEEVDAKAIIFVSSQNICDFISKKLLNAGIVTCAIHAGKPYQERLMNLEKFKREK 575
Query: 551 NGILICTEVLSRGLNVPEVSLVIIYNAAKTIAQYVHXXXXXXXXXXXXXALSFVMVDELA 610
N IL+CTEVLSRGLNVPEVSLVIIYNA KT AQYVH A++ ++ DEL+
Sbjct: 576 NSILLCTEVLSRGLNVPEVSLVIIYNAVKTFAQYVHTTGRTARGSRSGTAITLLLHDELS 635
Query: 611 SAYILVKCMKENELSSVPMVVYQKLKEMNDEFSSGLKTGKYRLIQGFGGKGLDHLDELNE 670
AYIL K M++ E+ ++ + ++L+EM+ +F SG+K GK+RL +GFGGKGL+++ E
Sbjct: 636 GAYILSKAMRDEEIKALDPLQAKELQEMSAKFESGMKKGKFRLSKGFGGKGLENIKSKRE 695
Query: 671 AKQSQEY----TDYGXXXXXXXXXXXXSG----------ATKMEYTRGKREEGHSTTYFA 716
Q+++ D G ++ Y K S ++A
Sbjct: 696 EAQNKDLELKKNDKRSDDLEKKISNPREGHDSVSESSALIPRLNYELFKESTDGSIIFYA 755
Query: 717 HININDLPQLARWEATKTETVSNIKQETGCNFESKGSFYPEGKGPKNDTDDPKLYLIVEG 776
+ INDLPQ+ RWEATK T+ IK ETGC+ +KG FYPEGK PKN+ D+PKLYL++EG
Sbjct: 756 KVYINDLPQIVRWEATKNTTLLFIKHETGCSITNKGKFYPEGKEPKNENDEPKLYLLIEG 815
Query: 777 AEESDVTMALELLNTKVKEGIRKAAVKDIQSGKY 810
+E D+ +++ELL KVKEG+ KAA ++S KY
Sbjct: 816 QDEKDIQLSIELLEQKVKEGVVKAASLSLKSTKY 849
>SPCC10H11.01 [A] KOG0334 RNA helicase
Length = 1014
Score = 386 bits (992), Expect = e-107
Identities = 245/661 (37%), Positives = 351/661 (53%), Gaps = 59/661 (8%)
Query: 193 IDYSKVLNLITLNKCLYREPNDLGLMSEKDVEELRLSLDNIKISGKDCPKPVTKWSQLGL 252
+D+SK+ N K Y EP +L +S +V+ELR SLD IKI G DCPKPVT WSQ GL
Sbjct: 367 VDHSKI-NYEDFKKDFYVEPEELKNLSPAEVDELRASLDGIKIRGIDCPKPVTSWSQCGL 425
Query: 253 SSEIMDLISNELQFVTLTPIQCQAIPAIMSGRDVIGISKTGSGKTVAFLLPLVRQIKAQP 312
S++ + +I N L + T IQ QAIPAI SGRDVIG++KTGSGKT+AFLLP+ R IK Q
Sbjct: 426 SAQTISVI-NSLGYEKPTSIQAQAIPAITSGRDVIGVAKTGSGKTIAFLLPMFRHIKDQR 484
Query: 313 PLAPDETGPIGLILTPTRELAVQIQEEALKFCKXXXXXXXXXXXXXELKQQINELKRGVD 372
PL E GPI +I+TPTRELAVQI E F K +K QI +LKRG +
Sbjct: 485 PLKTGE-GPIAIIMTPTRELAVQIFRECKPFLKLLNIRACCAYGGAPIKDQIADLKRGAE 543
Query: 373 IIVATPGRFIDLMTLNSGHLLSPTRISFVVMDEADRLFDLGFGPQVNQIMGCIRPDKQCV 432
I+V TPGR ID+++ N+G + + R +++V+DEADR+FDLGF PQV +I+ IRPD+Q V
Sbjct: 544 IVVCTPGRMIDVLSANAGRVTNLHRCTYLVLDEADRMFDLGFEPQVMRIINNIRPDRQTV 603
Query: 433 LFSATFPSKLKHFASRTLKNPIQITINSKSLINENIQQRVQIFDEEHVKFEFLLKRLSDR 492
LFSATFP ++ A + LK P++IT+ +S++ ++Q V++ EE KF LL+ L +
Sbjct: 604 LFSATFPRAMEALARKVLKKPVEITVGGRSVVASEVEQIVEVRPEES-KFSRLLELLGE- 661
Query: 493 LALHRGE-DEKTIIFVGSQQXXXXXXXXXXXNGITTFPIHAGKPSAERLRNLQKFKETDN 551
L+ + D +T++FV Q+ G T+ IH GK +R + +K
Sbjct: 662 --LYNNQLDVRTLVFVDRQESADALLSDLMKRGYTSNSIHGGKDQHDRDSTISDYKAGVF 719
Query: 552 GILICTEVLSRGLNVPEVSLVIIYNAAKTIAQYVHXXXXXXXXXXXXXALSFVMVDELAS 611
+LI T V++RGL+V + LV+ Y+ + YVH A++F+ ++
Sbjct: 720 DVLIATSVVARGLDVKSLQLVVNYDCPNHMEDYVHRVGRTGRAGHTGVAVTFITPEQEKY 779
Query: 612 AYILVKCMKENELSSVPMVVYQKLKEMNDEFSSGLKTGKYRLI-QGFGGKGLDHLDELNE 670
A + K +K +S P V ++L+ + +F +K GK + GFGGKGL LDE
Sbjct: 780 AVDIAKALK---MSKQP--VPKELQTLASQFLEKVKAGKEKAAGGGFGGKGLSRLDETRN 834
Query: 671 AKQSQEYTDYGXXXXXXXXXXXXSGATKMEYTRGKREEGHST------------------ 712
A++ + YG + +E ++ G T
Sbjct: 835 AERKMQRKAYG--EDEEDVETEAEAKSPLEKITPEKSTGDPTLDRVRAAVGGIAARAFAN 892
Query: 713 --------------------TYFAHININDLPQLARWEATKTETVSNIKQETGCNFESKG 752
Y A + IND PQ ARW T + ++ + TG + +KG
Sbjct: 893 QTAQSNKLTQPISIIKTDGDEYKAKMEINDYPQQARWAVTNNTNIVHVTELTGTSITTKG 952
Query: 753 SFYPEGKGPKNDTDDPKLYLIVEGAEESDVTMALELLNTKVKEGIR---KAAVKDIQSGK 809
+FY GK P + + KLYL +EG E V A+ L + EGI + K SG+
Sbjct: 953 NFYLPGKNP--EPGEEKLYLWIEGPSELVVNRAITELRRLLLEGINHSLEGGNKPSASGR 1010
Query: 810 Y 810
Y
Sbjct: 1011 Y 1011
>At1g20920 [A] KOG0334 RNA helicase
Length = 1166
Score = 305 bits (780), Expect = 2e-82
Identities = 183/493 (37%), Positives = 280/493 (56%), Gaps = 19/493 (3%)
Query: 193 IDYSKVLNLITLNKCLYREPNDLGLMSEKDVEELRLSLDNIKISGKDCPKPVTKWSQLGL 252
+D+SK+ K Y E D+ M++++V R L+ +K+ GKD P+P+ W Q GL
Sbjct: 479 VDHSKI-EYEPFRKNFYIEVKDISRMTQEEVNTYRKELE-LKVHGKDVPRPIKFWHQTGL 536
Query: 253 SSEIMDLISNELQFVTLTPIQCQAIPAIMSGRDVIGISKTGSGKTVAFLLPLVRQIKAQP 312
+S+I+D + +L + PIQ QA+P IMSGRD IG++KTGSGKT+ F+LP++R IK QP
Sbjct: 537 TSKILDTMK-KLNYEKPMPIQTQALPIIMSGRDCIGVAKTGSGKTLGFVLPMLRHIKDQP 595
Query: 313 PLAPDETGPIGLILTPTRELAVQIQEEALKFCKXXXXXXXXXXXXXELKQQINELKRGVD 372
P+ + GPIGL++ PTREL QI + KF K + QQI+ELKRG +
Sbjct: 596 PVEAGD-GPIGLVMAPTRELVQQIHSDIRKFSKPLGIRCVPVYGGSGVAQQISELKRGTE 654
Query: 373 IIVATPGRFIDLMTLNSGHLLSPTRISFVVMDEADRLFDLGFGPQVNQIMGCIRPDKQCV 432
I+V TPGR ID++ +SG + + R++F+VMDEADR+FD+GF PQ+ +I+ IRP++Q V
Sbjct: 655 IVVCTPGRMIDILCTSSGKITNLRRVTFLVMDEADRMFDMGFEPQITRIIQNIRPERQTV 714
Query: 433 LFSATFPSKLKHFASRTLKNPIQITINSKSLINENIQQRVQIFDEEHVKFEFLLKRLSDR 492
LFSATFP +++ A + L P++I + +S++N++I Q V++ E +F LL+ L +
Sbjct: 715 LFSATFPRQVETLARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESD-RFLRLLELLGE- 772
Query: 493 LALHRGEDEKTIIFVGSQQXXXXXXXXXXXNGITTFPIHAGKPSAERLRNLQKFKETDNG 552
E K ++FV SQ+ + +H GK +R + FK
Sbjct: 773 ----WSEKGKILVFVQSQEKCDALYRDMIKSSYPCLSLHGGKDQTDRESTISDFKNDVCN 828
Query: 553 ILICTEVLSRGLNVPEVSLVIIYNAAKTIAQYVHXXXXXXXXXXXXXALSFVMVDELASA 612
+LI T V +RGL+V E+ LV+ ++A YVH A++F+ D+ A
Sbjct: 829 LLIATSVAARGLDVKELELVVNFDAPNHYEDYVHRVGRTGRAGRKGCAVTFISEDDAKYA 888
Query: 613 YILVKCMKENELSSVPMVVYQKLKEMNDEFSSGLKTG-KYRLIQGFGGKGL---DHLDEL 668
LVK + ELS P V LK + D F +K G + G+GG G + +E+
Sbjct: 889 PDLVKAL---ELSEQP--VPDDLKALADGFMVKVKQGIEQAHGTGYGGSGFKFNEEEEEV 943
Query: 669 NEAKQSQEYTDYG 681
+A + + +YG
Sbjct: 944 RKAAKKAQAKEYG 956
Score = 63.5 bits (153), Expect = 1e-09
Identities = 37/95 (38%), Positives = 49/95 (50%), Gaps = 3/95 (3%)
Query: 714 YFAHININDLPQLARWEATKTETVSNIKQETGCNFESKGSFYPEGKGPKNDTDDPKLYLI 773
Y A + IND PQ ARW+ T ET+ I + TG ++G FYP G+ P + KLYL
Sbjct: 1067 YEAELEINDFPQNARWKVTHKETLGPISEWTGAAITTRGQFYPTGRIP--GPGERKLYLF 1124
Query: 774 VEGAEESDVTMALELLNTKVKEGIRKAAVKDIQSG 808
+EG E V A L +V E I A+ + G
Sbjct: 1125 IEGPSEKSVKHAKAELK-RVLEDITNQAMSSLPGG 1158
>At3g09620 [A] KOG0334 RNA helicase
Length = 989
Score = 302 bits (773), Expect = 2e-81
Identities = 216/684 (31%), Positives = 325/684 (46%), Gaps = 109/684 (15%)
Query: 193 IDYSKVLNLITLNKCLYREPNDLGLMSEKDVEELRLSLDNIKISGKDCPKPVTKWSQLGL 252
+D+SK+ K Y E D+ M++ V R L+ +K+ GKD P+P+ W Q GL
Sbjct: 346 VDHSKI-EYEPFRKNFYIEVKDISRMTQDAVNAYRKELE-LKVHGKDVPRPIQFWHQTGL 403
Query: 253 SSEIMDLISNELQFVTLTPIQCQAIPAIMSGRDVIGISKTGSGKTVAFLLPLVRQIKAQP 312
+S+I+D + +L + PIQ QA+P IMSGRD IG++KTGSGKT+ F+LP++R IK QP
Sbjct: 404 TSKILDTLK-KLNYEKPMPIQAQALPIIMSGRDCIGVAKTGSGKTLGFVLPMLRHIKDQP 462
Query: 313 PLAPDETGPIGLILTPTRELAVQIQEEALKFCKXXXXXXXXXXXXXELKQQINELKRGVD 372
P+ + GPIGL++ PTREL QI + KF K + QQI+ELKRG +
Sbjct: 463 PVEAGD-GPIGLVMAPTRELVQQIYSDIRKFSKALGIICVPVYGGSGVAQQISELKRGTE 521
Query: 373 IIVATPGRFIDLMTLNSGHLLSPTRISFVVMDEADRLFDLGFGPQVNQIMGCIRPDKQCV 432
I+V TPGR ID++ +SG + + R++++VMDEADR+FD+GF PQ+ +I+ IRPD+Q V
Sbjct: 522 IVVCTPGRMIDILCTSSGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTV 581
Query: 433 LFSATFPSKLKHFASRTLKNPIQITINSKSLINENIQQRVQIFDEEHVKFEFLLKRLSDR 492
LFSATFP +++ A + L P++I + +S++N++I Q V+I E +F LL+ L +
Sbjct: 582 LFSATFPRQVETLARKVLNKPVEIQVGGRSVVNKDITQLVEIRPESE-RFSRLLELLGEW 640
Query: 493 LALHRGEDEKTIIFVGSQQXXXXXXXXXXXNGITTFPIHAGKPSAERLRNLQKFKETDNG 552
E K ++FV SQ+ +++ FK
Sbjct: 641 Y-----EKGKVLVFVRSQE-----------------------------KSISDFKSDVCN 666
Query: 553 ILICTEVLSRGLNVPEVSLVIIYNAAKTIAQYVHXXXXXXXXXXXXXALSFVMVDELASA 612
+LI T V +RGL+V E+ LV+ ++A YVH A++F+ D+ A
Sbjct: 667 LLIATSVAARGLDVKELELVVNFDAPNHYEDYVHRVGRTGRAGRKGCAVTFISEDDAKYA 726
Query: 613 YIL--------------VKCMKENELSSVPMVVYQ-----------KLKEMNDEFSSGLK 647
L VK + E ++ V + Q K E DE K
Sbjct: 727 PDLVKALELSEQPVPDDVKAVAEGFMAKVKQGIEQAHGTGYGGSGFKFNEEEDEVRKAAK 786
Query: 648 TGKYRLIQGFGGKGLDHLDELNEAKQ-----SQEYTDYGXXXXXXXXXXXX--------- 693
+ + GF + D DE + ++ SQ+
Sbjct: 787 KAQAKEY-GFEEEKSDSEDENDVVRKAGGDISQQQITLAQIAAIASAASKAPVTANQLLP 845
Query: 694 ------------------------SGATKMEYTRGKREEGHSTTYFAHININDLPQLARW 729
+ A +Y + + Y A + IND PQ ARW
Sbjct: 846 NGGGLATEPGIPPTDGAGRVAAMIAAANVQQYLAKIQADAIPEHYEAELEINDFPQNARW 905
Query: 730 EATKTETVSNIKQETGCNFESKGSFYPEGKGPKNDTDDPKLYLIVEGAEESDVTMALELL 789
+ T ET+ I + +G + ++G FY G+ P ++ KLYL VEG E V A L
Sbjct: 906 KVTHKETLGPISEWSGASITTRGKFYEAGRIP--GPEERKLYLFVEGPTEISVKTAKAEL 963
Query: 790 NTKVKEGIRKAAVK---DIQSGKY 810
+V E I QSG+Y
Sbjct: 964 K-RVLEDITNQTFSLPGGAQSGRY 986
>Hs7662318 [A] KOG0334 RNA helicase
Length = 1032
Score = 296 bits (759), Expect = 7e-80
Identities = 183/481 (38%), Positives = 264/481 (54%), Gaps = 17/481 (3%)
Query: 193 IDYSKVLNLITLNKCLYREPNDLGLMSEKDVEELRLSLDNIKISGKDCPKPVTKWSQLGL 252
+D+ K+ K Y E +L MS+++V RL ++ I + GK CPKP+ W Q G+
Sbjct: 321 VDHGKI-EYEPFRKNFYVEVPELAKMSQEEVNVFRLEMEGITVKGKGCPKPIKSWVQCGI 379
Query: 253 SSEIMDLISNELQFVTLTPIQCQAIPAIMSGRDVIGISKTGSGKTVAFLLPLVRQIKAQP 312
S +I++ + + TPIQ QAIPAIMSGRD+IGI+KTGSGKT+AFLLP+ R I Q
Sbjct: 380 SMKILNSLKKH-GYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMDQR 438
Query: 313 PLAPDETGPIGLILTPTRELAVQIQEEALKFCKXXXXXXXXXXXXXELKQQINELKRGVD 372
L E GPI +I+TPTRELA+QI +E KF K + +QI ELKRG +
Sbjct: 439 SLEEGE-GPIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQIAELKRGAE 497
Query: 373 IIVATPGRFIDLMTLNSGHLLSPTRISFVVMDEADRLFDLGFGPQVNQIMGCIRPDKQCV 432
IIV TPGR ID++ NSG + + R+++VV+DEADR+FD+GF PQV +I+ +RPD+Q V
Sbjct: 498 IIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRPDRQTV 557
Query: 433 LFSATFPSKLKHFASRTLKNPIQITINSKSLINENIQQRVQIFDEEHVKFEFLLKRLSDR 492
+FSATFP ++ A R L PI++ + +S++ +++Q+V + +EE KF LL+ L
Sbjct: 558 MFSATFPRAMEALARRILSKPIEVQVGGRSVVCSDVEQQVIVIEEEK-KFLKLLELLG-- 614
Query: 493 LALHRGEDEKTIIFVGSQQXXXXXXXXXXXNGITTFPIHAGKPSAERLRNLQKFKETDNG 552
H E IIFV Q+ +H G +R + FK
Sbjct: 615 ---HYQESGSVIIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFKNGTCK 671
Query: 553 ILICTEVLSRGLNVPEVSLVIIYNAAKTIAQYVHXXXXXXXXXXXXXALSFVMVDELASA 612
+L+ T V +RGL+V + LV+ Y+ YVH A +F+ D+ A
Sbjct: 672 LLVATSVAARGLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITEDQARYA 731
Query: 613 YILVKCMKENELSSVPMVVYQKLKEMNDEFSSGLKT-GK-YRLIQGFGGKGLDHLDELNE 670
++K + ELS V L+++ +F K GK + GF GKG DE +
Sbjct: 732 GDIIKAL---ELSGT--AVPPDLEKLWSDFKDQQKAEGKIIKKSSGFSGKGF-KFDETEQ 785
Query: 671 A 671
A
Sbjct: 786 A 786
Score = 55.8 bits (133), Expect = 3e-07
Identities = 30/101 (29%), Positives = 51/101 (49%), Gaps = 4/101 (3%)
Query: 714 YFAHININDLPQLARWEATKTETVSNIKQETGCNFESKGSFYPEGKGPKNDTDDPKLYLI 773
Y + IND PQ ARW+ T E + I + + +G+++P GK PK + K+YL
Sbjct: 933 YEEELEINDFPQTARWKVTSKEALQRISEYSEAAITIRGTYFPPGKEPKE--GERKIYLA 990
Query: 774 VEGAEESDVTMALELLNTKVKEGIRKA--AVKDIQSGKYRM 812
+E A E V A + +KE + + + + G+Y++
Sbjct: 991 IESANELAVQKAKAEITRLIKEELIRLQNSYQPTNKGRYKV 1031
>7293060 [A] KOG0334 RNA helicase
Length = 1224
Score = 293 bits (750), Expect = 7e-79
Identities = 176/487 (36%), Positives = 270/487 (55%), Gaps = 17/487 (3%)
Query: 193 IDYSKVLNLITLNKCLYREPNDLGLMSEKDVEELRLSLDNIKISGKDCPKPVTKWSQLGL 252
ID+S V K Y E +L M+ DVE+ R L+ I++ GK CPKP+ W+Q G+
Sbjct: 459 IDHSSV-TYAPFRKNFYVEVPELTRMTAADVEKYRSDLEGIQVKGKGCPKPIKTWAQCGV 517
Query: 253 SSEIMDLISNELQFVTLTPIQCQAIPAIMSGRDVIGISKTGSGKTVAFLLPLVRQIKAQP 312
S + M+++ L F TPIQCQAIPAIMSGRD+IGI+KTGSGKT+AF+LP+ R I QP
Sbjct: 518 SKKEMEVL-RRLGFEKPTPIQCQAIPAIMSGRDLIGIAKTGSGKTLAFILPMFRHILDQP 576
Query: 313 PLAPDETGPIGLILTPTRELAVQIQEEALKFCKXXXXXXXXXXXXXELKQQINELKRGVD 372
+ D G I +I+ PTREL +QI ++ KF K + +QI ELKRG +
Sbjct: 577 SME-DGDGAIAIIMAPTRELCMQIGKDIRKFSKSLGLRPVCVYGGTGISEQIAELKRGAE 635
Query: 373 IIVATPGRFIDLMTLNSGHLLSPTRISFVVMDEADRLFDLGFGPQVNQIMGCIRPDKQCV 432
IIV TPGR ID++ NSG + + R+++VV+DEADR+FD+GF PQV +I+ +RPD+Q V
Sbjct: 636 IIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIIDNVRPDRQTV 695
Query: 433 LFSATFPSKLKHFASRTLKNPIQITINSKSLINENIQQRVQIFDEEHVKFEFLLKRLSDR 492
+FSATFP +++ A R LK PI++ + +S++ + ++Q V I +++ F+ L +
Sbjct: 696 MFSATFPRQMEALARRILKKPIEVIVGGRSVVCKEVEQHVVILNDDAKFFKLL-----EL 750
Query: 493 LALHRGEDEKTIIFVGSQQXXXXXXXXXXXNGITTFPIHAGKPSAERLRNLQKFKETDNG 552
L +++ E I+FV Q+ +H G +R + FK
Sbjct: 751 LGIYQ-EAGSIIVFVDKQENADILLRDLMKASYPCMSLHGGIDQFDRDSTIIDFKSGKVR 809
Query: 553 ILICTEVLSRGLNVPEVSLVIIYNAAKTIAQYVHXXXXXXXXXXXXXALSFVMVDELASA 612
+LI T V +RGL+V ++ LV+ Y+ YVH A +F+ ++ A
Sbjct: 810 LLIATSVAARGLDVKDLILVVNYDVPNHYEDYVHRCGRTGRAGKKGSAYTFITPEQSRYA 869
Query: 613 YILVKCM--KENELSSVPMVVYQKLKEMNDEFSSGLKTGKYRLIQGFGGKGLDHLD-ELN 669
+++ M + + ++ + K + + + TG GF GKG + E N
Sbjct: 870 GDIIRAMDLSGTLIPAELQALWTEYKALQEAEGKTVHTG-----GGFSGKGFKFDEQEFN 924
Query: 670 EAKQSQE 676
AK+S++
Sbjct: 925 AAKESKK 931
Score = 57.8 bits (138), Expect = 7e-08
Identities = 32/103 (31%), Positives = 52/103 (50%), Gaps = 4/103 (3%)
Query: 712 TTYFAHININDLPQLARWEATKTETVSNIKQETGCNFESKGSFYPEGKGPKNDTDDPKLY 771
T Y + IND PQ ARW+ T E ++ I + + +G++ P+GK P + + KLY
Sbjct: 1123 TKYEEELEINDFPQQARWKVTSKEALAQISEYSEAGLTVRGTYVPQGKNPPD--GERKLY 1180
Query: 772 LIVEGAEESDVTMALELLNTKVKEGIRK--AAVKDIQSGKYRM 812
L +E E V A + +KE + K +A G+Y++
Sbjct: 1181 LAIESCSELAVQKAKREITRLIKEELLKLSSAHHVFNKGRYKV 1223
>CE28031 [A] KOG0334 RNA helicase
Length = 747
Score = 280 bits (715), Expect = 8e-75
Identities = 175/491 (35%), Positives = 266/491 (53%), Gaps = 25/491 (5%)
Query: 194 DYSKVLNLITLNKCLYREPNDLGLMSEKDVEELRLSLDNIKISGKDCPKPVTKWSQLGLS 253
D+SKV K Y E ++ M++ +V+ R LD+I + G DCPKP+ W+Q G++
Sbjct: 254 DHSKVYYR-KFKKNFYIETEEIRRMTKAEVKAYREELDSITVKGIDCPKPIKTWAQCGVN 312
Query: 254 SEIMDLISNELQFVTLTPIQCQAIPAIMSGRDVIGISKTGSGKTVAFLLPLVRQIKAQPP 313
++M+++ + ++ T IQ QAIP+IMSGRDVIGI+KTGSGKT+AFLLP+ R I QP
Sbjct: 313 LKMMNVLK-KFEYSKPTSIQAQAIPSIMSGRDVIGIAKTGSGKTLAFLLPMFRHILDQPE 371
Query: 314 LAPDETGPIGLILTPTRELAVQIQEEALKFCKXXXXXXXXXXXXXELKQQINELKRGVDI 373
L + GPI +IL PTRELA+Q +EA KF K + +QI +LKRG +I
Sbjct: 372 LEEGD-GPIAVILAPTRELAMQTYKEANKFAKPLGLKVACTYGGVGISEQIADLKRGAEI 430
Query: 374 IVATPGRFIDLMTLNSGHLLSPTRISFVVMDEADRLFDLGFGPQVNQIMGCIRPDKQCVL 433
+V TPGR ID++ NSG + + R++++V+DEADR+FD GF PQ+ +++ IRPDKQ VL
Sbjct: 431 VVCTPGRMIDVLAANSGKVTNLRRVTYLVLDEADRMFDKGFEPQIMKVVNNIRPDKQTVL 490
Query: 434 FSATFPSKLKHFASRTLKNPIQITINSKSLINENIQQRVQIFDEEHVKFEFLLKRLSDRL 493
FSATFP ++ A + L P++I + KS++ +I Q + EH KF LL+ L
Sbjct: 491 FSATFPRHMEALARKVLDKPVEILVGGKSVVCSDITQNA-VICAEHQKFLKLLELLGMYY 549
Query: 494 ALHRGEDEKTIIFVGSQQXXXXXXXXXXXNGITTF-PIHAGKPSAERLRNLQKFKETDNG 552
E+ +I+FV Q+ G + P+H G +R ++ FK
Sbjct: 550 -----EEGSSIVFVDKQEKADDIVDQLMRTGYNSVAPLHGGIDQHDRDSSIADFKTGVIK 604
Query: 553 ILICTEVLSRGLNVPEVSLVIIYNAAKTIAQYVHXXXXXXXXXXXXXALSFV-------M 605
+L+ T V +RGL+V + LV+ Y+ YVH A +FV M
Sbjct: 605 VLVATSVAARGLDVKNLILVVNYDCPNHYEDYVHRVGRTGRAGRKGYAYTFVLPEHQEKM 664
Query: 606 VDELASAYILVKCMKENELSSVPMVVYQKLKEMNDEFSSGLKTGKYRLIQGFGGKGLDHL 665
E+ A+ C +L + ++++ K +K G +GF G G +
Sbjct: 665 AGEICRAFETAGCKPPADLKA----MFERFKSEMAAEGKEVKLGG----KGFEGSGYKYD 716
Query: 666 DELNEAKQSQE 676
+ EA +++
Sbjct: 717 EGEAEADANKK 727
>CE27427 [A] KOG0334 RNA helicase
Length = 970
Score = 280 bits (715), Expect = 8e-75
Identities = 175/491 (35%), Positives = 266/491 (53%), Gaps = 25/491 (5%)
Query: 194 DYSKVLNLITLNKCLYREPNDLGLMSEKDVEELRLSLDNIKISGKDCPKPVTKWSQLGLS 253
D+SKV K Y E ++ M++ +V+ R LD+I + G DCPKP+ W+Q G++
Sbjct: 254 DHSKVYYR-KFKKNFYIETEEIRRMTKAEVKAYREELDSITVKGIDCPKPIKTWAQCGVN 312
Query: 254 SEIMDLISNELQFVTLTPIQCQAIPAIMSGRDVIGISKTGSGKTVAFLLPLVRQIKAQPP 313
++M+++ + ++ T IQ QAIP+IMSGRDVIGI+KTGSGKT+AFLLP+ R I QP
Sbjct: 313 LKMMNVLK-KFEYSKPTSIQAQAIPSIMSGRDVIGIAKTGSGKTLAFLLPMFRHILDQPE 371
Query: 314 LAPDETGPIGLILTPTRELAVQIQEEALKFCKXXXXXXXXXXXXXELKQQINELKRGVDI 373
L + GPI +IL PTRELA+Q +EA KF K + +QI +LKRG +I
Sbjct: 372 LEEGD-GPIAVILAPTRELAMQTYKEANKFAKPLGLKVACTYGGVGISEQIADLKRGAEI 430
Query: 374 IVATPGRFIDLMTLNSGHLLSPTRISFVVMDEADRLFDLGFGPQVNQIMGCIRPDKQCVL 433
+V TPGR ID++ NSG + + R++++V+DEADR+FD GF PQ+ +++ IRPDKQ VL
Sbjct: 431 VVCTPGRMIDVLAANSGKVTNLRRVTYLVLDEADRMFDKGFEPQIMKVVNNIRPDKQTVL 490
Query: 434 FSATFPSKLKHFASRTLKNPIQITINSKSLINENIQQRVQIFDEEHVKFEFLLKRLSDRL 493
FSATFP ++ A + L P++I + KS++ +I Q + EH KF LL+ L
Sbjct: 491 FSATFPRHMEALARKVLDKPVEILVGGKSVVCSDITQNA-VICAEHQKFLKLLELLGMYY 549
Query: 494 ALHRGEDEKTIIFVGSQQXXXXXXXXXXXNGITTF-PIHAGKPSAERLRNLQKFKETDNG 552
E+ +I+FV Q+ G + P+H G +R ++ FK
Sbjct: 550 -----EEGSSIVFVDKQEKADDIVDQLMRTGYNSVAPLHGGIDQHDRDSSIADFKTGVIK 604
Query: 553 ILICTEVLSRGLNVPEVSLVIIYNAAKTIAQYVHXXXXXXXXXXXXXALSFV-------M 605
+L+ T V +RGL+V + LV+ Y+ YVH A +FV M
Sbjct: 605 VLVATSVAARGLDVKNLILVVNYDCPNHYEDYVHRVGRTGRAGRKGYAYTFVLPEHQEKM 664
Query: 606 VDELASAYILVKCMKENELSSVPMVVYQKLKEMNDEFSSGLKTGKYRLIQGFGGKGLDHL 665
E+ A+ C +L + ++++ K +K G +GF G G +
Sbjct: 665 AGEICRAFETAGCKPPADLKA----MFERFKSEMAAEGKEVKLGG----KGFEGSGYKYD 716
Query: 666 DELNEAKQSQE 676
+ EA +++
Sbjct: 717 EGEAEADANKK 727
>At2g47330 [A] KOG0339 ATP-dependent RNA helicase
Length = 748
Score = 273 bits (698), Expect = 8e-73
Identities = 158/410 (38%), Positives = 232/410 (56%), Gaps = 12/410 (2%)
Query: 177 DSEILFXXXXXXXXXAIDYSKVLNLITLNKCLYREPNDLGLMSEKDVEELRLSLDNIKIS 236
D+ I+ A+D+S + + +NK Y E + M+E++ + R L I++S
Sbjct: 162 DNPIVVDKRKIEPITALDHSSI-DYEPINKDFYEELESISGMTEQETTDYRQRL-GIRVS 219
Query: 237 GKDCPKPVTKWSQLGLSSEIMDLISNELQFVTLTPIQCQAIPAIMSGRDVIGISKTGSGK 296
G D +PV + G SS+IM I + + T IQCQA+P ++SGRDVIGI+KTGSGK
Sbjct: 220 GFDVHRPVKTFEDCGFSSQIMSAIKKQA-YEKPTAIQCQALPIVLSGRDVIGIAKTGSGK 278
Query: 297 TVAFLLPLVRQIKAQPPLAPDETGPIGLILTPTRELAVQIQEEALKFCKXXXXXXXXXXX 356
T AF+LP++ I QP L DE GPIG+I PTRELA QI EA KF K
Sbjct: 279 TAAFVLPMIVHIMDQPELQRDE-GPIGVICAPTRELAHQIFLEAKKFSKAYGLRVSAVYG 337
Query: 357 XXELKQQINELKRGVDIIVATPGRFIDLMTLNSGHLLSPTRISFVVMDEADRLFDLGFGP 416
+Q ELK G +I+VATPGR ID++ + + L+ R S++V+DEADR+FDLGF P
Sbjct: 338 GMSKHEQFKELKAGCEIVVATPGRLIDMLKMKA---LTMMRASYLVLDEADRMFDLGFEP 394
Query: 417 QVNQIMGCIRPDKQCVLFSATFPSKLKHFASRTLKNPIQITINSKSLINENIQQRVQIFD 476
QV I+G IRPD+Q +LFSAT P K++ A L +PI++T+ + NE+I Q V +
Sbjct: 395 QVRSIVGQIRPDRQTLLFSATMPWKVEKLAREILSDPIRVTVGEVGMANEDITQVVNVIP 454
Query: 477 EEHVKFEFLLKRLSDRLALHRGEDEKTIIFVGSQQXXXXXXXXXXXNGITTFPIHAGKPS 536
+ K +LL++L + ++ ++F + N +H K
Sbjct: 455 SDAEKLPWLLEKLPGMI-----DEGDVLVFASKKATVDEIEAQLTLNSFKVAALHGDKDQ 509
Query: 537 AERLRNLQKFKETDNGILICTEVLSRGLNVPEVSLVIIYNAAKTIAQYVH 586
A R+ LQKFK + +LI T+V +RGL++ + V+ Y+ AK + +VH
Sbjct: 510 ASRMETLQKFKSGVHHVLIATDVAARGLDIKSLKTVVNYDIAKDMDMHVH 559
>At5g63120 [A] KOG0331 ATP-dependent RNA helicase
Length = 564
Score = 253 bits (645), Expect = 1e-66
Identities = 156/425 (36%), Positives = 236/425 (54%), Gaps = 17/425 (4%)
Query: 200 NLITLNKCLYREPNDLGLMSEKDVEELRLSLDNIKISGKDCPKPVTKWSQLGLSSEIMDL 259
NL+ K Y E + M+E+DV R D I + G+D PKP+ + I++
Sbjct: 94 NLVHFEKNFYVESPTVQAMTEQDVAMYRTERD-ISVEGRDVPKPMKMFQDANFPDNILEA 152
Query: 260 ISNELQFVTLTPIQCQAIPAIMSGRDVIGISKTGSGKTVAFLLPLVRQIKAQPPLAPDET 319
I+ +L F TPIQ Q P + GRD+IGI++TGSGKT+A+LLP + + AQP L D+
Sbjct: 153 IA-KLGFTEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPALVHVSAQPRLGQDD- 210
Query: 320 GPIGLILTPTRELAVQIQEEALKFCKXXXXXXXXXXXXXELKQQINELKRGVDIIVATPG 379
GPI LIL PTRELAVQIQEE+ KF QI +L+RGV+I++ATPG
Sbjct: 211 GPIVLILAPTRELAVQIQEESRKFGLRSGVRSTCIYGGAPKGPQIRDLRRGVEIVIATPG 270
Query: 380 RFIDLMTLNSGHLLSPTRISFVVMDEADRLFDLGFGPQVNQIMGCIRPDKQCVLFSATFP 439
R ID++ +L R++++V+DEADR+ D+GF PQ+ +I+ IRPD+Q +L+SAT+P
Sbjct: 271 RLIDMLECQHTNL---KRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLLWSATWP 327
Query: 440 SKLKHFASRTLKNPIQITINSKSL-INENIQQRVQIF--DEEHVKFEFLLKRLSDRLALH 496
+++ A + L++P + I S L N++I Q ++I E++ + LLK+L D
Sbjct: 328 REVETLARQFLRDPYKAIIGSTDLKANQSINQVIEIVPTPEKYNRLLTLLKQLMD----- 382
Query: 497 RGEDEKTIIFVGSQQXXXXXXXXXXXNGITTFPIHAGKPSAERLRNLQKFKETDNGILIC 556
K +IFV +++ +G IH K +ER R L +FK + I+
Sbjct: 383 ---GSKILIFVETKRGCDQVTRQLRMDGWPALAIHGDKTQSERDRVLAEFKSGRSPIMTA 439
Query: 557 TEVLSRGLNVPEVSLVIIYNAAKTIAQYVHXXXXXXXXXXXXXALSFVMVDELASAYILV 616
T+V +RGL+V ++ V+ Y+ T+ Y+H A +F D A LV
Sbjct: 440 TDVAARGLDVKDIKCVVNYDFPNTLEDYIHRIGRTGRAGAKGMAFTFFTHDNAKFARELV 499
Query: 617 KCMKE 621
K ++E
Sbjct: 500 KILQE 504
>SPBP8B7.16c [A] KOG0331 ATP-dependent RNA helicase
Length = 550
Score = 251 bits (641), Expect = 3e-66
Identities = 167/462 (36%), Positives = 250/462 (53%), Gaps = 19/462 (4%)
Query: 201 LITLNKCLYREPNDLGLMSEKDVEELRLSLDNIKISGKDCPKPVTKWSQLGLSSEIMDLI 260
LI K Y+E ++ S+ +V E R + I + G + PKPVT + + G + ++ +
Sbjct: 79 LIPFQKDFYKEHENVRNRSDAEVTEYRKEKE-IVVHGLNVPKPVTTFEEAGFPNYVLKEV 137
Query: 261 SNELQFVTLTPIQCQAIPAIMSGRDVIGISKTGSGKTVAFLLPLVRQIKAQPPLAPDETG 320
+L F TPIQ QA P MSGRD++GIS TGSGKT+++ LP + I AQP L+P + G
Sbjct: 138 K-QLGFEAPTPIQQQAWPMAMSGRDMVGISATGSGKTLSYCLPAIVHINAQPLLSPGD-G 195
Query: 321 PIGLILTPTRELAVQIQEEALKFCKXXXXXXXXXXXXXELKQQINELKRGVDIIVATPGR 380
PI L+L PTRELAVQIQ+E KF K QI +L RGV+I +ATPGR
Sbjct: 196 PIVLVLAPTRELAVQIQQECTKFGKSSRIRNTCVYGGVPRGPQIRDLIRGVEICIATPGR 255
Query: 381 FIDLMTLNSGHLLSPTRISFVVMDEADRLFDLGFGPQVNQIMGCIRPDKQCVLFSATFPS 440
+D++ N +L R++++V+DEADR+ D+GF PQ+ +I+ IRPD+Q V+FSAT+P
Sbjct: 256 LLDMLDSNKTNL---RRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTVMFSATWPK 312
Query: 441 KLKHFASRTLKNPIQITINSKSL-INENIQQRVQIFDEEHVKFEFLLKRLSDRLALHRGE 499
+++ A L + IQ+T+ S L + NI+Q V++ D K L K + + L +
Sbjct: 313 EVQRLARDYLNDYIQVTVGSLDLAASHNIKQIVEVVDNAD-KRARLGKDIEEVL---KDR 368
Query: 500 DEKTIIFVGSQQXXXXXXXXXXXNGITTFPIHAGKPSAERLRNLQKFKETDNGILICTEV 559
D K +IF G+++ +G IH K ER L +F+ + I++ T+V
Sbjct: 369 DNKVLIFTGTKRVADDITRFLRQDGWPALAIHGDKAQDERDWVLNEFRTGKSPIMVATDV 428
Query: 560 LSRGLNVPEVSLVIIYNAAKTIAQYVHXXXXXXXXXXXXXALSFVMVDELASAYILVKCM 619
SRG++V ++ V Y+ YVH A ++ D A LV +
Sbjct: 429 ASRGIDVKGITHVFNYDFPGNTEDYVHRIGRTGRAGAKGTAYTYFTSDNAKQARELVSIL 488
Query: 620 KENELSSVPMVVYQKLKEMNDEFSSGLKTGKYRLIQGFGGKG 661
E + P KL+EM +SSG + G YR +G G+G
Sbjct: 489 SEAKQDIDP-----KLEEM-ARYSSGGRGGNYR--RGGYGRG 522
>At1g55150 [A] KOG0331 ATP-dependent RNA helicase
Length = 501
Score = 246 bits (627), Expect = 1e-64
Identities = 149/422 (35%), Positives = 231/422 (54%), Gaps = 13/422 (3%)
Query: 201 LITLNKCLYREPNDLGLMSEKDVEELRLSLDNIKISGKDCPKPVTKWSQLGLSSEIMDLI 260
L K Y E + M++ +VEE R L I + GKD PKPV + +G +++ +
Sbjct: 56 LTPFEKNFYVESPAVAAMTDTEVEEYR-KLREITVEGKDIPKPVKSFRDVGFPDYVLEEV 114
Query: 261 SNELQFVTLTPIQCQAIPAIMSGRDVIGISKTGSGKTVAFLLPLVRQIKAQPPLAPDETG 320
+ F TPIQ Q P M GRD+IGI++TGSGKT+++LLP + + AQP LA + G
Sbjct: 115 K-KAGFTEPTPIQSQGWPMAMKGRDLIGIAETGSGKTLSYLLPAIVHVNAQPMLAHGD-G 172
Query: 321 PIGLILTPTRELAVQIQEEALKFCKXXXXXXXXXXXXXELKQQINELKRGVDIIVATPGR 380
PI L+L PTRELAVQIQ+EA KF Q+ +L++GV+I++ATPGR
Sbjct: 173 PIVLVLAPTRELAVQIQQEASKFGSSSKIKTTCIYGGVPKGPQVRDLQKGVEIVIATPGR 232
Query: 381 FIDLMTLNSGHLLSPTRISFVVMDEADRLFDLGFGPQVNQIMGCIRPDKQCVLFSATFPS 440
ID+M N+ +L R++++V+DEADR+ D+GF PQ+ +I+ IRPD+Q + +SAT+P
Sbjct: 233 LIDMMESNNTNL---RRVTYLVLDEADRMLDMGFDPQIRKIVSHIRPDRQTLYWSATWPK 289
Query: 441 KLKHFASRTLKNPIQITINSKSL-INENIQQRVQIFDEEHVKFEFLLKRLSDRLALHRGE 499
+++ + + L NP ++ I S L N I+Q V + E K+ L+K L D + +
Sbjct: 290 EVEQLSKKFLYNPYKVIIGSSDLKANRAIRQIVDVISESQ-KYNKLVKLLEDIM-----D 343
Query: 500 DEKTIIFVGSQQXXXXXXXXXXXNGITTFPIHAGKPSAERLRNLQKFKETDNGILICTEV 559
+ ++F+ +++ +G IH K AER L +F+ + I+ T+V
Sbjct: 344 GSRILVFLDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFRSGKSPIMTATDV 403
Query: 560 LSRGLNVPEVSLVIIYNAAKTIAQYVHXXXXXXXXXXXXXALSFVMVDELASAYILVKCM 619
+RGL+V +V VI Y+ ++ YVH A +F V A L +
Sbjct: 404 AARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTVANARFAKELTNIL 463
Query: 620 KE 621
+E
Sbjct: 464 QE 465
>7294797 [A] KOG0339 ATP-dependent RNA helicase
Length = 791
Score = 245 bits (626), Expect = 2e-64
Identities = 137/392 (34%), Positives = 218/392 (54%), Gaps = 11/392 (2%)
Query: 195 YSKVLNLITLNKCLYREPNDLGLMSEKDVEELRLSLDNIKISGKDCPKPVTKWSQLGLSS 254
Y + K Y + +D+ + ++ V ELR +L +K++G PKPVT + G
Sbjct: 220 YHSEIEYEPFEKNFYTQHDDIAALDDEQVRELRRTL-GVKVTGPSPPKPVTSFGHFGFDE 278
Query: 255 EIMDLISNELQFVTLTPIQCQAIPAIMSGRDVIGISKTGSGKTVAFLLPLVRQIKAQPPL 314
+++ + + ++ TPIQ QA+P +SGRD+IGI+KTGSGKT AF+ P++ + Q L
Sbjct: 279 QLIKAV-RKAEYTQPTPIQAQAVPTALSGRDIIGIAKTGSGKTAAFIWPMLMHVMDQKQL 337
Query: 315 APDETGPIGLILTPTRELAVQIQEEALKFCKXXXXXXXXXXXXXELKQQINELKRGVDII 374
P + GPIGLIL PTREL++QI EA KF K +Q L++G +II
Sbjct: 338 KPGD-GPIGLILAPTRELSLQIYNEAKKFGKVYNLNVVCCYGGGSKWEQSKALEQGAEII 396
Query: 375 VATPGRFIDLMTLNSGHLLSPTRISFVVMDEADRLFDLGFGPQVNQIMGCIRPDKQCVLF 434
VATPGR ID++ + + +L R++F+V+DEADR+F +GF PQV I +RPD+QC++F
Sbjct: 397 VATPGRMIDMVKMKATNL---RRVTFLVLDEADRMFHMGFEPQVRSICNHVRPDRQCLMF 453
Query: 435 SATFPSKLKHFASRTLKNPIQITINSKSLINENIQQRVQIFDEEHVKFEFLLKRLSDRLA 494
SATF +++ A L +P++I + N++I Q V +F K+ +LL L L+
Sbjct: 454 SATFKKRIERLARDVLSDPVRIVQGDLNEANQDITQSVYVFPNPLQKWNWLLCHLVKFLS 513
Query: 495 LHRGEDEKTIIFVGSQQXXXXXXXXXXXNGITTFPIHAGKPSAERLRNLQKFKETDNGIL 554
+ +IFV + +H A+R + + +FK + IL
Sbjct: 514 -----EGSVLIFVTKKVDAETVSNNLLIKEYNCLLLHGDMDQADRNKVITQFKRKECDIL 568
Query: 555 ICTEVLSRGLNVPEVSLVIIYNAAKTIAQYVH 586
+ T+V +RGL++P + V+ Y+ A+ I + H
Sbjct: 569 VATDVAARGLDIPHIRNVVNYDTARDIETHTH 600
>YNL112w [A] KOG0331 ATP-dependent RNA helicase
Length = 546
Score = 240 bits (612), Expect = 7e-63
Identities = 148/423 (34%), Positives = 229/423 (53%), Gaps = 13/423 (3%)
Query: 201 LITLNKCLYREPNDLGLMSEKDVEELRLSLDNIKISGKDCPKPVTKWSQLGLSSEIMDLI 260
L T K Y E + S+ ++ + R + + ISG D PKP+T + + G +++ +
Sbjct: 70 LPTFEKNFYVEHESVRDRSDSEIAQFRKE-NEMTISGHDIPKPITTFDEAGFPDYVLNEV 128
Query: 261 SNELQFVTLTPIQCQAIPAIMSGRDVIGISKTGSGKTVAFLLPLVRQIKAQPPLAPDETG 320
E F T IQCQ P +SGRD++GI+ TGSGKT+++ LP + I AQP LAP + G
Sbjct: 129 KAE-GFDKPTGIQCQGWPMALSGRDMVGIAATGSGKTLSYCLPGIVHINAQPLLAPGD-G 186
Query: 321 PIGLILTPTRELAVQIQEEALKFCKXXXXXXXXXXXXXELKQQINELKRGVDIIVATPGR 380
PI L+L PTRELAVQIQ E KF QQI +L RG +I++ATPGR
Sbjct: 187 PIVLVLAPTRELAVQIQTECSKFGHSSRIRNTCVYGGVPKSQQIRDLSRGSEIVIATPGR 246
Query: 381 FIDLMTLNSGHLLSPTRISFVVMDEADRLFDLGFGPQVNQIMGCIRPDKQCVLFSATFPS 440
ID++ + +L R++++V+DEADR+ D+GF PQ+ +I+ IRPD+Q +++SAT+P
Sbjct: 247 LIDMLEIGKTNL---KRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPK 303
Query: 441 KLKHFASRTLKNPIQITINSKSL-INENIQQRVQIFDEEHVKFEFLLKRLSDRLALHRGE 499
++K A+ L +PIQ+ + S L + NI Q V++ + + RL+ L +
Sbjct: 304 EVKQLAADYLNDPIQVQVGSLELSASHNITQIVEVVSDFEKR-----DRLNKYLETASQD 358
Query: 500 DE-KTIIFVGSQQXXXXXXXXXXXNGITTFPIHAGKPSAERLRNLQKFKETDNGILICTE 558
+E KT+IF +++ +G IH K ER LQ+F+ + I++ T+
Sbjct: 359 NEYKTLIFASTKRMCDDITKYLREDGWPALAIHGDKDQRERDWVLQEFRNGRSPIMVATD 418
Query: 559 VLSRGLNVPEVSLVIIYNAAKTIAQYVHXXXXXXXXXXXXXALSFVMVDELASAYILVKC 618
V +RG++V ++ VI Y+ I YVH A+SF L+
Sbjct: 419 VAARGIDVKGINYVINYDMPGNIEDYVHRIGRTGRAGATGTAISFFTEQNKGLGAKLISI 478
Query: 619 MKE 621
M+E
Sbjct: 479 MRE 481
>CE17559 [A] KOG0339 ATP-dependent RNA helicase
Length = 811
Score = 237 bits (604), Expect = 6e-62
Identities = 152/447 (34%), Positives = 235/447 (52%), Gaps = 19/447 (4%)
Query: 193 IDYSKVLNLITLNKCLYREPNDLGLMSEKDVEELRLSLDNIKISGKDCPKPVTKWSQLGL 252
ID+S++ NK Y E D+ + DV L+ ++ N+++ G P+PV ++
Sbjct: 215 IDHSQI-QYQKFNKNFYEEHEDIKRLHYMDVIRLQNTM-NLRVGGLKPPRPVCSFAHFSF 272
Query: 253 SSEIMDLISNELQFVTLTPIQCQAIPAIMSGRDVIGISKTGSGKTVAFLLPLVRQIKAQP 312
+M+ I ++ TPIQ AIP+ +SGRDV+GI+KTGSGKT A+L P + I QP
Sbjct: 273 DKLLMEAIRKS-EYEQPTPIQAMAIPSALSGRDVLGIAKTGSGKTAAYLWPAIVHIMDQP 331
Query: 313 PLAPDETGPIGLILTPTRELAVQIQEEALKFCKXXXXXXXXXXXXXELKQQINELKR-GV 371
L E GP+ +I+ PTRELA+Q+ +EA KFCK +Q NEL+ G
Sbjct: 332 DLKAGE-GPVAVIVVPTRELAIQVFQEAKKFCKVYNINPICAYGGGSKWEQSNELQNEGA 390
Query: 372 DIIVATPGRFIDLMTLNSGHLLSPTRISFVVMDEADRLFDLGFGPQVNQIMGCIRPDKQC 431
+++V TPGR IDL+ + + + L R +F+V DEADR+FD+GF QV I +RPD+QC
Sbjct: 391 EMVVCTPGRIIDLVKMGATNFL---RTTFLVFDEADRMFDMGFEAQVKSISDHVRPDRQC 447
Query: 432 VLFSATFPSKLKHFASRTLKNPIQITINSKSLINENIQQRVQIFDEEHVKFEFLLKRLSD 491
++FSATF K++ A L +P++I N +I+Q+V + + VK +L++ L +
Sbjct: 448 LMFSATFKQKVERLARDALVDPVRIVQGEVGEANADIEQKVFVMQNQDVKLHWLIRNLVE 507
Query: 492 RLALHRGEDEKTIIFVGSQQXXXXXXXXXXXNGITTFPIHAGKPSAERLRNLQKFKETDN 551
+L K +IFV + +H AER NL KF++
Sbjct: 508 FASL-----GKVLIFVTKKLDSEDVAKKLKMKDFDIVLLHGDMLQAERNENLLKFRKKSQ 562
Query: 552 GILICTEVLSRGLNVPEVSLVIIYNAAKTIAQYVHXXXXXXXXXXXXXALSFVMVDELAS 611
IL+ T+V +RGL++ E+ VI ++ A+ I +VH A + V ++
Sbjct: 563 -ILVATDVAARGLDISEIRTVINFDMARDIDTHVHRIGRTGRAGHKGTAYTLVTEKDIEM 621
Query: 612 AYILVKCMKENELSSVPMVVYQKLKEM 638
LVK L SV V + L ++
Sbjct: 622 VGHLVK-----NLESVSQEVPKPLMDL 643
>Hs4758138 [A] KOG0331 ATP-dependent RNA helicase
Length = 614
Score = 236 bits (601), Expect = 1e-61
Identities = 154/469 (32%), Positives = 246/469 (51%), Gaps = 23/469 (4%)
Query: 206 KCLYREPNDLGLMSEKDVEELRLSLDNIKISGKDCPKPVTKWSQLGLSSEIMDLISNELQ 265
K Y+E DL + ++VE R S + I + G +CPKPV + + + +MD+I+ +
Sbjct: 56 KNFYQEHPDLARRTAQEVETYRRSKE-ITVRGHNCPKPVLNFYEANFPANVMDVIARQ-N 113
Query: 266 FVTLTPIQCQAIPAIMSGRDVIGISKTGSGKTVAFLLPLVRQIKAQPPLAPDETGPIGLI 325
F T IQ Q P +SG D++G+++TGSGKT+++LLP + I QP L + GPI L+
Sbjct: 114 FTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGD-GPICLV 172
Query: 326 LTPTRELAVQIQEEALKFCKXXXXXXXXXXXXXELKQQINELKRGVDIIVATPGRFIDLM 385
L PTRELA Q+Q+ A ++C+ QI +L+RGV+I +ATPGR ID +
Sbjct: 173 LAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFL 232
Query: 386 TLNSGHLLSPTRISFVVMDEADRLFDLGFGPQVNQIMGCIRPDKQCVLFSATFPSKLKHF 445
+L R +++V+DEADR+ D+GF PQ+ +I+ IRPD+Q +++SAT+P +++
Sbjct: 233 ECGKTNL---RRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQL 289
Query: 446 ASRTLKNPIQITINSKSL-INENIQQRVQIFDEEHVKFEFLLKRLSDRLALHRGEDEKTI 504
A LK+ I I I + L N NI Q V + + K E L++ + + ++ ++ KTI
Sbjct: 290 AEDFLKDYIHINIGALELSANHNILQIVDVCHDVE-KDEKLIRLMEEIMS---EKENKTI 345
Query: 505 IFVGSQQXXXXXXXXXXXNGITTFPIHAGKPSAERLRNLQKFKETDNGILICTEVLSRGL 564
+FV +++ +G IH K ER L +FK ILI T+V SRGL
Sbjct: 346 VFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGL 405
Query: 565 NVPEVSLVIIYNAAKTIAQYVHXXXXXXXXXXXXXALSFVMVDELASAYILVKCMKENEL 624
+V +V VI Y+ + Y+H A +F + + L+ ++E
Sbjct: 406 DVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLISVLREANQ 465
Query: 625 SSVPMVVYQKLKEMNDEFSSGLKTGKYRLIQGFGGKGLDHLDELNEAKQ 673
+ P KL ++ ++ SG G+ GG D D + K+
Sbjct: 466 AINP-----KLLQLVEDRGSGRSRGR-------GGMKDDRRDRYSAGKR 502
>7295314 [A] KOG0331 ATP-dependent RNA helicase
Length = 811
Score = 231 bits (590), Expect = 3e-60
Identities = 158/463 (34%), Positives = 235/463 (50%), Gaps = 12/463 (2%)
Query: 199 LNLITLNKCLYREPNDLGLMSEKDVEELRLSLDNIKISGKDCPKPVTKWSQLGLSSEIMD 258
+NL K Y+ P D L E L+ + I I G P P ++ + G +M+
Sbjct: 105 VNLTPFRKNFYK-PCDSVLARTVGETETFLTSNEITIKGDQVPTPSIEFEEGGFPDYVMN 163
Query: 259 LISNELQFVTLTPIQCQAIPAIMSGRDVIGISKTGSGKTVAFLLPLVRQIKAQPPLAPDE 318
I + F T IQ Q P MSGRD++G+++TGSGKT+A++LP V I QP L +
Sbjct: 164 EIRKQ-GFAKPTAIQAQGWPIAMSGRDLVGVAQTGSGKTLAYVLPAVVHINNQPRLERGD 222
Query: 319 TGPIGLILTPTRELAVQIQEEALKFCKXXXXXXXXXXXXXELKQQINELKRGVDIIVATP 378
GPI L+L PTRELA QIQ+ A++F QQ +L+RGV+I++ATP
Sbjct: 223 -GPIALVLAPTRELAQQIQQVAIEFGSNTHVRNTCIFGGAPKGQQARDLERGVEIVIATP 281
Query: 379 GRFIDLMTLNSGHLLSPTRISFVVMDEADRLFDLGFGPQVNQIMGCIRPDKQCVLFSATF 438
GR ID + + L R +++V+DEADR+ D+GF PQ+ +IM IRPD+Q +++SAT+
Sbjct: 282 GRLIDFLERGTTSL---KRCTYLVLDEADRMLDMGFEPQIRKIMQQIRPDRQVLMWSATW 338
Query: 439 PSKLKHFASRTLKNPIQITINSKSL-INENIQQRVQIFDEEHVKFEFLLKRLSDRLALHR 497
P +++ A L N IQ+ I S SL N NI Q V + DE K L+K L+D +
Sbjct: 339 PKEVRQLAEEFLNNYIQVNIGSLSLSANHNILQIVDVCDENE-KLMKLIKLLTD---ISA 394
Query: 498 GEDEKTIIFVGSQQXXXXXXXXXXXNGITTFPIHAGKPSAERLRNLQKFKETDNGILICT 557
+ KTIIFV +++ G IH K ER L F+ + IL+ T
Sbjct: 395 ENETKTIIFVETKKRVDEITRNISRQGWRACAIHGDKSQQERDFVLSSFRNGRHSILVAT 454
Query: 558 EVLSRGLNVPEVSLVIIYNAAKTIAQYVHXXXXXXXXXXXXXALSFVMVDELASAYILVK 617
+V +RGL+V +V VI Y+ YVH A + A L++
Sbjct: 455 DVAARGLDVDDVKFVINYDYPSNSEDYVHRIGRTGRSNNTGTAYTLFTHSNANKANDLIQ 514
Query: 618 CMKENELSSVPMVVYQKLKEMNDEFSSGLKTGKYRLIQGFGGK 660
++E + P ++ + ++ G+ G YR G+ G+
Sbjct: 515 VLREANQTINPKLMNMAMNGGYNKRGGGM-GGGYRGGNGYQGR 556
>Hs5453840_1 [A] KOG0331 ATP-dependent RNA helicase
Length = 469
Score = 230 bits (587), Expect = 6e-60
Identities = 147/417 (35%), Positives = 223/417 (53%), Gaps = 10/417 (2%)
Query: 206 KCLYREPNDLGLMSEKDVEELRLSLDNIKISGKDCPKPVTKWSQLGLSSEIMDLISNELQ 265
K Y E ++ ++ +V+ELR + G CPKPV + +MD++ ++
Sbjct: 53 KNFYVEHPEVARLTPYEVDELRRKKEITVRGGDVCPKPVFAFHHANFPQYVMDVLMDQ-H 111
Query: 266 FVTLTPIQCQAIPAIMSGRDVIGISKTGSGKTVAFLLPLVRQIKAQPPLAPDETGPIGLI 325
F TPIQCQ P +SGRD++GI++TGSGKT+A+LLP + I QP L + GPI L+
Sbjct: 112 FTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINHQPYLERGD-GPICLV 170
Query: 326 LTPTRELAVQIQEEALKFCKXXXXXXXXXXXXXELKQQINELKRGVDIIVATPGRFIDLM 385
L PTRELA Q+Q+ A + K QI +L+RGV+I +ATPGR ID +
Sbjct: 171 LAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFL 230
Query: 386 TLNSGHLLSPTRISFVVMDEADRLFDLGFGPQVNQIMGCIRPDKQCVLFSATFPSKLKHF 445
+L R +++V+DEADR+ D+GF PQ+ +I+ IRPD+Q +++SAT+P +++
Sbjct: 231 ESGKTNL---RRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQL 287
Query: 446 ASRTLKNPIQITINSKSL-INENIQQRVQIFDEEHVKFEFLLKRLSDRLALHRGEDEKTI 504
A L++ QI + + L N NI Q V + E K L++ + + +A ++ KTI
Sbjct: 288 AEDFLRDYTQINVGNLELSANHNILQIVDVCMESE-KDHKLIQLMEEIMA---EKENKTI 343
Query: 505 IFVGSQQXXXXXXXXXXXNGITTFPIHAGKPSAERLRNLQKFKETDNGILICTEVLSRGL 564
IFV +++ +G IH K ER L +F+ ILI T+V SRGL
Sbjct: 344 IFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIATDVASRGL 403
Query: 565 NVPEVSLVIIYNAAKTIAQYVHXXXXXXXXXXXXXALSFVMVDELASAYILVKCMKE 621
+V +V VI Y+ + YVH A +F L A L+K ++E
Sbjct: 404 DVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQARELIKVLEE 460
>CE18785 [A] KOG0331 ATP-dependent RNA helicase
Length = 561
Score = 227 bits (579), Expect = 5e-59
Identities = 152/454 (33%), Positives = 238/454 (51%), Gaps = 18/454 (3%)
Query: 200 NLITLNKCLYREPNDLGLMSEKDVEELRLSLDNIKISGKDCPKPVTKWSQLGLSSEIMDL 259
NL + K Y E + + ++++ +S + + + G+ P+PV ++++ L +I +L
Sbjct: 86 NLTPIEKDFYHENAAVSRREQYEIDQW-VSANQVTLEGRGVPRPVFEFNEAPLPGQIHEL 144
Query: 260 ISNELQFVTLTPIQCQAIPAIMSGRDVIGISKTGSGKTVAFLLPLVRQIKAQPPLAPDET 319
+ + Q T+ IQ + P MSGRD+I I+KTGSGKT+AF+LP + I Q E
Sbjct: 145 LYGKFQKPTV--IQSISWPIAMSGRDIISIAKTGSGKTLAFMLPALVHITKQAHRQRGE- 201
Query: 320 GPIGLILTPTRELAVQIQEEALKFCKXXXXXXXXXXXXXELKQQINELKRGVDIIVATPG 379
GP L+L PTRELA Q+QE ++ FC Q +L+RGVDI+VATPG
Sbjct: 202 GPAVLVLLPTRELAQQVQEVSIDFCHSLGLKMTCLFGGASKGPQARDLERGVDIVVATPG 261
Query: 380 RFIDLMTLNSGHLLSPTRISFVVMDEADRLFDLGFGPQVNQIMGCIRPDKQCVLFSATFP 439
R +D + + ++ + S++V+DEADR+ D+GF PQ+ +I+G IRPD+Q ++FSAT+P
Sbjct: 262 RLLDFLDNGTTNM---KKCSYLVLDEADRMLDMGFEPQIKKIIGQIRPDRQTLMFSATWP 318
Query: 440 SKLKHFASRTLKNPIQITINSKSL-INENIQQRVQIFDEEHVKFEFLLKRLSDRLALHRG 498
+++ AS K+ + + S L N NI Q V I EEH K L++ L+ +
Sbjct: 319 KEVRALASDFQKDAAFLNVGSLELAANHNITQVVDIL-EEHAKQAKLMELLNH---IMNQ 374
Query: 499 EDEKTIIFVGSQQXXXXXXXXXXXNGITTFPIHAGKPSAERLRNLQKFKETDNGILICTE 558
++ KTIIFV +++ +G T IH K ER LQ+FK I++ T+
Sbjct: 375 KECKTIIFVETKRKADELTRAMRRDGWPTLCIHGDKNQGERDWVLQEFKAGKTPIMLATD 434
Query: 559 VLSRGLNVPEVSLVIIYNAAKTIAQYVHXXXXXXXXXXXXXALSFVMVDELASAYILVKC 618
V +RGL+V ++ VI Y+ YVH A +F + A L+K
Sbjct: 435 VAARGLDVDDIKFVINYDYPNNSEDYVHRIGRTGRSDKKGTAYTFFTHTNASKAKDLLKV 494
Query: 619 MKENELSSVPMVVYQKLKEM-NDEFSSGLKTGKY 651
+ E V Q L++M N + G+Y
Sbjct: 495 LDE-----AKQTVPQALRDMANRSYGGSNSRGRY 523
>Hs11321632 [A] KOG0339 ATP-dependent RNA helicase
Length = 709
Score = 221 bits (564), Expect = 3e-57
Identities = 132/394 (33%), Positives = 212/394 (53%), Gaps = 12/394 (3%)
Query: 193 IDYSKVLNLITLNKCLYREPNDLGLMSEKDVEELRLSLDNIKISGKDCPKPVTKWSQLGL 252
ID+S++ + K Y E ++ ++ + + +LR L N+++SG P+P + ++ G
Sbjct: 84 IDHSEI-DYPPFEKNFYNEHEEITNLTPQQLIDLRHKL-NLRVSGAAPPRPGSSFAHFGF 141
Query: 253 SSEIMDLISNELQFVTLTPIQCQAIPAIMSGRDVIGISKTGSGKTVAFLLPLVRQIKAQP 312
++M I ++ TPIQCQ +P +SGRD+IGI+KTGSGKT AF+ P++ I Q
Sbjct: 142 DEQLMHQIRKS-EYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQK 200
Query: 313 PLAPDETGPIGLILTPTRELAVQIQEEALKFCKXXXXXXXXXXXXXELKQQINELKRGVD 372
L P + GPI +I+ PTREL QI E +F K + +Q L+ G +
Sbjct: 201 ELEPGD-GPIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQAKALQEGAE 259
Query: 373 IIVATPGRFIDLMTLNSGHLLSPTRISFVVMDEADRLFDLGFGPQVNQIMGCIRPDKQCV 432
I+V TPGR ID + + +L R+S++V DEADR+FD+GF QV I +RPD+Q +
Sbjct: 260 IVVCTPGRLIDHVKKKATNL---QRVSYLVFDEADRMFDMGFEYQVRSIASHVRPDRQTL 316
Query: 433 LFSATFPSKLKHFASRTLKNPIQITINSKSLINENIQQRVQIFDEEHVKFEFLLKRLSDR 492
LFSATF K++ A L +PI++ NE++ Q V+I K+ +L +RL +
Sbjct: 317 LFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHSGPSKWNWLTRRLVEF 376
Query: 493 LALHRGEDEKTIIFVGSQQXXXXXXXXXXXNGITTFPIHAGKPSAERLRNLQKFKETDNG 552
+ ++FV + G +H +ER + + FK+ D
Sbjct: 377 TS-----SGSVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIP 431
Query: 553 ILICTEVLSRGLNVPEVSLVIIYNAAKTIAQYVH 586
+L+ T+V +RGL++P + VI Y+ A+ I + H
Sbjct: 432 VLVATDVAARGLDIPSIKTVINYDVARDIDTHTH 465
>7290853 [A] KOG0331 ATP-dependent RNA helicase
Length = 945
Score = 217 bits (553), Expect = 5e-56
Identities = 147/416 (35%), Positives = 221/416 (52%), Gaps = 15/416 (3%)
Query: 212 PNDLGLMSEKDVEELRLSLDNIKISGKDCPKPVTKWSQLGLSSEIMDLISNELQFVTLTP 271
PN L SE+ V E+R L+ I +SG + P PV + + L + +++ + + F T
Sbjct: 206 PNTLA-KSEQQVAEIRRELE-ITVSGNELPHPVVSFEESSLPAHVIEEMKRQ-GFTKPTA 262
Query: 272 IQCQAIPAIMSGRDVIGISKTGSGKTVAFLLPLVRQIKAQPPLAPDETGPIGLILTPTRE 331
IQ Q P +SGRD++GI++TGSGKT+A++LP + I QPP+ E GPI L+L PTRE
Sbjct: 263 IQSQGWPIALSGRDLVGIAQTGSGKTLAYMLPAIVHIGNQPPIIRGE-GPIALVLAPTRE 321
Query: 332 LAVQIQEEALKF---CKXXXXXXXXXXXXXELKQQINELKRGVDIIVATPGRFIDLMTLN 388
LA QIQ + CK ++ Q +L RGV++I+ATPGR ID +
Sbjct: 322 LAQQIQSVVRDYGHLCKPEIRHTCIFGGSSKVPQA-RDLDRGVEVIIATPGRLIDFLENR 380
Query: 389 SGHLLSPTRISFVVMDEADRLFDLGFGPQVNQIMGCIRPDKQCVLFSATFPSKLKHFASR 448
+ +L R +++V+DEADR+ D+GF PQ+ +I+ IRPD+Q V++SAT+P +++ A
Sbjct: 381 NTNL---QRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQVVMWSATWPKEVQALAGD 437
Query: 449 TLKNPIQITINSKSL-INENIQQRVQIFD--EEHVKFEFLLKRLSDRLALHRGEDEKTII 505
L + IQI I S +L N NI+Q V+I E+ + LL +S + K I+
Sbjct: 438 FLNDYIQINIGSMNLSANHNIRQIVEICTEIEKPQRLVCLLNEISP-IKNSGNNGNKIIV 496
Query: 506 FVGSQQXXXXXXXXXXXNGITTFPIHAGKPSAERLRNLQKFKETDNGILICTEVLSRGLN 565
FV ++ G IH K ER L+ F+ + ILI T+V SRGL+
Sbjct: 497 FVETKIKVEDILQIIRAEGYNATSIHGDKTQNERDSVLKDFRNGKSNILIATDVASRGLD 556
Query: 566 VPEVSLVIIYNAAKTIAQYVHXXXXXXXXXXXXXALSFVMVDELASAYILVKCMKE 621
V ++ VI Y+ + YVH A +F D A L+ ++E
Sbjct: 557 VEDLQYVINYDYPNSSENYVHRIGRTGRCQQLGTAYTFFTPDNAKQARELISVLEE 612
>7296646 [A] KOG0331 ATP-dependent RNA helicase
Length = 577
Score = 213 bits (543), Expect = 7e-55
Identities = 144/432 (33%), Positives = 225/432 (51%), Gaps = 17/432 (3%)
Query: 193 IDYSKVLNLITLNKCLYREPNDLGLMSEKDVEELRLSLDNIKISGKDCPKPVTKWSQLGL 252
+D+S NL K Y+E ++ S +V+ R + I + G+ P P+ +S++ L
Sbjct: 92 VDFS---NLAPFKKNFYQEHPNVANRSPYEVQRYREEQE-ITVRGQ-VPNPIQDFSEVHL 146
Query: 253 SSEIMDLISNELQFVTLTPIQCQAIPAIMSGRDVIGISKTGSGKTVAFLLPLVRQIKAQP 312
+M I + + T IQ Q P MSG + +GI+KTGSGKT+ ++LP + I Q
Sbjct: 147 PDYVMKEIRRQ-GYKAPTAIQAQGWPIAMSGSNFVGIAKTGSGKTLGYILPAIVHINNQQ 205
Query: 313 PLAPDETGPIGLILTPTRELAVQIQEEALKFCKXXXXXXXXXXXXXELKQQINELKRGVD 372
PL + GPI L+L PTRELA QIQ+ A +F Q+ +L+RG +
Sbjct: 206 PLQRGD-GPIALVLAPTRELAQQIQQVATEFGSSSYVRNTCVFGGAPKGGQMRDLQRGCE 264
Query: 373 IIVATPGRFIDLMTLNSGHLLSPTRISFVVMDEADRLFDLGFGPQVNQIMGCIRPDKQCV 432
I++ATPGR ID ++ S +L R +++V+DEADR+ D+GF PQ+ +I+ IRPD+Q +
Sbjct: 265 IVIATPGRLIDFLSAGSTNL---KRCTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTL 321
Query: 433 LFSATFPSKLKHFASRTLKNPIQITINSKSL-INENIQQRVQIFDE--EHVKFEFLLKRL 489
++SAT+P ++K A L N IQI I S L N NI+Q V + DE + K + LL +
Sbjct: 322 MWSATWPKEVKQLAEDFLGNYIQINIGSLELSANHNIRQVVDVCDEFSKEEKLKTLLSDI 381
Query: 490 SDRLALHRGEDEKTIIFVGSQQXXXXXXXXXXXNGITTFPIHAGKPSAERLRNLQKFKET 549
D K IIFV +++ G+ IH K +ER L++F+
Sbjct: 382 YDT----SESPGKIIIFVETKRRVDNLVRFIRSFGVRCGAIHGDKSQSERDFVLREFRSG 437
Query: 550 DNGILICTEVLSRGLNVPEVSLVIIYNAAKTIAQYVHXXXXXXXXXXXXXALSFVMVDEL 609
+ IL+ T+V +RGL+V + VI ++ + Y+H + +F +
Sbjct: 438 KSNILVATDVAARGLDVDGIKYVINFDYPQNSEDYIHRIGRTGRSNTKGTSFAFFTKNNA 497
Query: 610 ASAYILVKCMKE 621
A LV ++E
Sbjct: 498 KQAKALVDVLRE 509
>CE26887 [A] KOG0333 U5 snRNP-like RNA helicase subunit
Length = 730
Score = 209 bits (533), Expect = 1e-53
Identities = 140/444 (31%), Positives = 219/444 (48%), Gaps = 42/444 (9%)
Query: 214 DLGLMSEKDVEELRLSLDNIKISGKDCPKPVTKWSQLGLSSEIMDLISNELQFVTLTPIQ 273
+L MS++D R NI I G P+P+ W + G E+ + E+ ++ TPIQ
Sbjct: 271 ELSEMSDRDWRIFREDF-NISIKGGRVPRPLRNWEEAGFPDEVYQAVK-EIGYLEPTPIQ 328
Query: 274 CQAIPAIMSGRDVIGISKTGSGKTVAFLLPLVRQIKAQPPLAPDE---TGPIGLILTPTR 330
QAIP + RDVIG+++TGSGKT AFLLPL+ I + P + E GP +I+ PTR
Sbjct: 329 RQAIPIGLQNRDVIGVAETGSGKTAAFLLPLLVWITSLPKMERQEHRDLGPYAIIMAPTR 388
Query: 331 ELAVQIQEEALKFCKXXXXXXXXXXXXXELKQQINELKRGVDIIVATPGRFIDLMTLNSG 390
ELA QI+EE KF K + Q +L+ GV++++ATPGR +D++
Sbjct: 389 ELAQQIEEETNKFGKLLGIKTVSVIGGASREDQGMKLRMGVEVVIATPGRLLDVL---EN 445
Query: 391 HLLSPTRISFVVMDEADRLFDLGFGPQVNQIMGCIRPD---------------------- 428
L + ++V++DEADR+ D+GF P V +++ + PD
Sbjct: 446 RYLLLNQCTYVILDEADRMLDMGFEPDVQKVLEYM-PDTNMKKDTDEFDNEEALMKGFST 504
Query: 429 ----KQCVLFSATFPSKLKHFASRTLKNPIQITINSKSLINENIQQRVQIFDEEHVKFEF 484
+Q V+F+AT S ++ A + L+ P + I S E ++Q V + E+ +
Sbjct: 505 REKYRQTVMFTATMSSAIERLARQYLRRPAVVHIGSAGKPTERVEQVVYMVPEDRKR--- 561
Query: 485 LLKRLSDRLALHRGEDEKTIIFVGSQQXXXXXXXXXXXNGITTFPIHAGKPSAERLRNLQ 544
K+L + L IIFV ++ G +H GK +R LQ
Sbjct: 562 --KKLVE--VLESQFQPPIIIFVNQKKGADMLSKGLTKLGFKPTVLHGGKGQDQREYALQ 617
Query: 545 KFKETDNGILICTEVLSRGLNVPEVSLVIIYNAAKTIAQYVHXXXXXXXXXXXXXALSFV 604
KE + IL+ T+V RG++V +VSLV+ Y+ AK+I Y H A++F+
Sbjct: 618 ALKEGTSDILVATDVAGRGIDVKDVSLVLNYDMAKSIEDYTHRIGRTGRAGKHGKAITFL 677
Query: 605 MVDELASAYILVKCMKENELSSVP 628
D+ A + L + + E+ +SS P
Sbjct: 678 TPDDTAVYFDLKQVLVESPVSSCP 701
>CE24878 [A] KOG0333 U5 snRNP-like RNA helicase subunit
Length = 769
Score = 209 bits (533), Expect = 1e-53
Identities = 140/444 (31%), Positives = 219/444 (48%), Gaps = 42/444 (9%)
Query: 214 DLGLMSEKDVEELRLSLDNIKISGKDCPKPVTKWSQLGLSSEIMDLISNELQFVTLTPIQ 273
+L MS++D R NI I G P+P+ W + G E+ + E+ ++ TPIQ
Sbjct: 271 ELSEMSDRDWRIFREDF-NISIKGGRVPRPLRNWEEAGFPDEVYQAVK-EIGYLEPTPIQ 328
Query: 274 CQAIPAIMSGRDVIGISKTGSGKTVAFLLPLVRQIKAQPPLAPDE---TGPIGLILTPTR 330
QAIP + RDVIG+++TGSGKT AFLLPL+ I + P + E GP +I+ PTR
Sbjct: 329 RQAIPIGLQNRDVIGVAETGSGKTAAFLLPLLVWITSLPKMERQEHRDLGPYAIIMAPTR 388
Query: 331 ELAVQIQEEALKFCKXXXXXXXXXXXXXELKQQINELKRGVDIIVATPGRFIDLMTLNSG 390
ELA QI+EE KF K + Q +L+ GV++++ATPGR +D++
Sbjct: 389 ELAQQIEEETNKFGKLLGIKTVSVIGGASREDQGMKLRMGVEVVIATPGRLLDVL---EN 445
Query: 391 HLLSPTRISFVVMDEADRLFDLGFGPQVNQIMGCIRPD---------------------- 428
L + ++V++DEADR+ D+GF P V +++ + PD
Sbjct: 446 RYLLLNQCTYVILDEADRMLDMGFEPDVQKVLEYM-PDTNMKKDTDEFDNEEALMKGFST 504
Query: 429 ----KQCVLFSATFPSKLKHFASRTLKNPIQITINSKSLINENIQQRVQIFDEEHVKFEF 484
+Q V+F+AT S ++ A + L+ P + I S E ++Q V + E+ +
Sbjct: 505 REKYRQTVMFTATMSSAIERLARQYLRRPAVVHIGSAGKPTERVEQVVYMVPEDRKR--- 561
Query: 485 LLKRLSDRLALHRGEDEKTIIFVGSQQXXXXXXXXXXXNGITTFPIHAGKPSAERLRNLQ 544
K+L + L IIFV ++ G +H GK +R LQ
Sbjct: 562 --KKLVE--VLESQFQPPIIIFVNQKKGADMLSKGLTKLGFKPTVLHGGKGQDQREYALQ 617
Query: 545 KFKETDNGILICTEVLSRGLNVPEVSLVIIYNAAKTIAQYVHXXXXXXXXXXXXXALSFV 604
KE + IL+ T+V RG++V +VSLV+ Y+ AK+I Y H A++F+
Sbjct: 618 ALKEGTSDILVATDVAGRGIDVKDVSLVLNYDMAKSIEDYTHRIGRTGRAGKHGKAITFL 677
Query: 605 MVDELASAYILVKCMKENELSSVP 628
D+ A + L + + E+ +SS P
Sbjct: 678 TPDDTAVYFDLKQVLVESPVSSCP 701
>7298989 [A] KOG0336 ATP-dependent RNA helicase
Length = 703
Score = 207 bits (528), Expect = 4e-53
Identities = 141/469 (30%), Positives = 239/469 (50%), Gaps = 26/469 (5%)
Query: 204 LNKCLYREPNDLGLMSEKDVEELRLSLDNIKISGKDCPK--------PVTKWSQLGLSSE 255
L K Y+E ++ +++ ++E +R + I +S PK P W+ +E
Sbjct: 231 LTKNFYKEAPEVANLTKSEIERIREENNKITVSYVFEPKEGETSPPIPNPVWTFEQCFAE 290
Query: 256 IMDLISN--ELQFVTLTPIQCQAIPAIMSGRDVIGISKTGSGKTVAFLLPLVRQIKAQPP 313
D++ ++ F +PIQ QA P ++ G D+IGI++TG+GKT+AFLLP + + Q
Sbjct: 291 YPDMLEEITKMGFSKPSPIQSQAWPILLQGHDMIGIAQTGTGKTLAFLLPGMIHTEYQST 350
Query: 314 LAPDETGPIGLILTPTRELAVQIQEEALKFCKXXXXXXXXXXXXXELKQQINELKRGVDI 373
G L+L PTRELA+QI+ E K+ QI++L+RG +I
Sbjct: 351 PRGTRGGANVLVLAPTRELALQIEMEVKKY-SFRGMKAVCVYGGGNRNMQISDLERGAEI 409
Query: 374 IVATPGRFIDLMTLNSGHLLSPTRISFVVMDEADRLFDLGFGPQVNQIMGCIRPDKQCVL 433
I+ TPGR DL+ N ++ + I+++V+DEADR+ D+GF PQ+ ++M IRPD+Q ++
Sbjct: 410 IICTPGRLNDLIMAN---VIDVSTITYLVLDEADRMLDMGFEPQIRKVMLDIRPDRQTIM 466
Query: 434 FSATFPSKLKHFASRTLKNPIQITINSKSL-INENIQQRVQIFDEEHVKFEFLLKRLSDR 492
SAT+P ++ A +KNPIQ+ + S L +++Q +++ +++ KF +
Sbjct: 467 TSATWPPGVRRLAQSYMKNPIQVCVGSLDLAATHSVKQIIKLMEDDMDKFNTITS----- 521
Query: 493 LALHRGEDEKTIIFVGSQQXXXXXXXXXXXNGITTFPIHAGKPSAERLRNLQKFKETDNG 552
+ +K IIF G + +G T IH + +R + + K
Sbjct: 522 FVKNMSSTDKIIIFCGRKVRADDLSSELTLDGFMTQCIHGNRDQMDREQAIADIKSGVVR 581
Query: 553 ILICTEVLSRGLNVPEVSLVIIYNAAKTIAQYVHXXXXXXXXXXXXXALSFVMVDELASA 612
IL+ T+V SRGL++ +++ VI Y+ I +YVH ++SF ++ A A
Sbjct: 582 ILVATDVASRGLDIEDITHVINYDFPHNIEEYVHRVGRTGRAGRQGTSISFFTREDWAMA 641
Query: 613 YILVKCMKENELSSVPMVVYQKLKEMNDEFSSGLKTGKYRLIQGFGGKG 661
L++ ++E E VP +L M F + +K + GFGG+G
Sbjct: 642 KELIEILQEAE-QEVP----DELHNMARRFKA-MKDKRAAEGGGFGGRG 684
>Hs4759278 [A] KOG0333 U5 snRNP-like RNA helicase subunit
Length = 820
Score = 204 bits (520), Expect = 3e-52
Identities = 132/426 (30%), Positives = 207/426 (47%), Gaps = 40/426 (9%)
Query: 232 NIKISGKDCPKPVTKWSQLGLSSEIMDLISNELQFVTLTPIQCQAIPAIMSGRDVIGISK 291
+I G P P+ W L I+++I ++ + TPIQ QAIP + RD+IG+++
Sbjct: 378 SITTKGGKIPNPIRSWKDSSLPPHILEVI-DKCGYKEPTPIQRQAIPIGLQNRDIIGVAE 436
Query: 292 TGSGKTVAFLLPLVRQIKAQPPL---APDETGPIGLILTPTRELAVQIQEEALKFCKXXX 348
TGSGKT AFL+PL+ I P + + GP +IL PTRELA QI+EE +KF K
Sbjct: 437 TGSGKTAAFLIPLLVWITTLPKIDRIEESDQGPYAIILAPTRELAQQIEEETIKFGKPLG 496
Query: 349 XXXXXXXXXXELKQQINELKRGVDIIVATPGRFIDLMTLNSGHLLSPTRISFVVMDEADR 408
+ Q L+ G +I++ATPGR ID++ L +R ++VV+DEADR
Sbjct: 497 IRTVAVIGGISREDQGFRLRMGCEIVIATPGRLIDVL---ENRYLVLSRCTYVVLDEADR 553
Query: 409 LFDLGFGPQVNQIMGCI-----RPD---------------------KQCVLFSATFPSKL 442
+ D+GF P V +I+ + +PD +Q V+F+AT P +
Sbjct: 554 MIDMGFEPDVQKILEHMPVSNQKPDTDEAEDPEKMLANFESGKHKYRQTVMFTATMPPAV 613
Query: 443 KHFASRTLKNPIQITINSKSLINENIQQRVQIFDEEHVKFEFLLKRLSDRLALHRGEDEK 502
+ A L+ P + I S +E ++Q+V + E + + L L +G D
Sbjct: 614 ERLARSYLRRPAVVYIGSAGKPHERVEQKVFLMSESEKRKKLLA-------ILEQGFDPP 666
Query: 503 TIIFVGSQQXXXXXXXXXXXNGITTFPIHAGKPSAERLRNLQKFKETDNGILICTEVLSR 562
IIFV ++ G +H GK +R L K IL+ T+V R
Sbjct: 667 IIIFVNQKKGCDVLAKSLEKMGYNACTLHGGKGQEQREFALSNLKAGAKDILVATDVAGR 726
Query: 563 GLNVPEVSLVIIYNAAKTIAQYVHXXXXXXXXXXXXXALSFVMVDELASAYILVKCMKEN 622
G+++ +VS+V+ Y+ AK I Y+H A++F+ ++ A Y L + + E+
Sbjct: 727 GIDIQDVSMVVNYDMAKNIEDYIHRIGRTGRAGKSGVAITFLTKEDSAVFYELKQAILES 786
Query: 623 ELSSVP 628
+SS P
Sbjct: 787 PVSSCP 792
>Hs17474597 [A] KOG0333 U5 snRNP-like RNA helicase subunit
Length = 820
Score = 204 bits (520), Expect = 3e-52
Identities = 132/426 (30%), Positives = 207/426 (47%), Gaps = 40/426 (9%)
Query: 232 NIKISGKDCPKPVTKWSQLGLSSEIMDLISNELQFVTLTPIQCQAIPAIMSGRDVIGISK 291
+I G P P+ W L I+++I ++ + TPIQ QAIP + RD+IG+++
Sbjct: 378 SITTKGGKIPNPIRSWKDSSLPPHILEVI-DKCGYKEPTPIQRQAIPIGLQNRDIIGVAE 436
Query: 292 TGSGKTVAFLLPLVRQIKAQPPL---APDETGPIGLILTPTRELAVQIQEEALKFCKXXX 348
TGSGKT AFL+PL+ I P + + GP +IL PTRELA QI+EE +KF K
Sbjct: 437 TGSGKTAAFLIPLLVWITTLPKIDRIEESDQGPYAIILAPTRELAQQIEEETIKFGKPLG 496
Query: 349 XXXXXXXXXXELKQQINELKRGVDIIVATPGRFIDLMTLNSGHLLSPTRISFVVMDEADR 408
+ Q L+ G +I++ATPGR ID++ L +R ++VV+DEADR
Sbjct: 497 IRTVAVIGGISREDQGFRLRMGCEIVIATPGRLIDVL---ENRYLVLSRCTYVVLDEADR 553
Query: 409 LFDLGFGPQVNQIMGCI-----RPD---------------------KQCVLFSATFPSKL 442
+ D+GF P V +I+ + +PD +Q V+F+AT P +
Sbjct: 554 MIDMGFEPDVQKILEHMPVSNQKPDTDEAEDPEKMLANFESGKHKYRQTVMFTATMPPAV 613
Query: 443 KHFASRTLKNPIQITINSKSLINENIQQRVQIFDEEHVKFEFLLKRLSDRLALHRGEDEK 502
+ A L+ P + I S +E ++Q+V + E + + L L +G D
Sbjct: 614 ERLARSYLRRPAVVYIGSAGKPHERVEQKVFLMSESEKRKKLLA-------ILEQGFDPP 666
Query: 503 TIIFVGSQQXXXXXXXXXXXNGITTFPIHAGKPSAERLRNLQKFKETDNGILICTEVLSR 562
IIFV ++ G +H GK +R L K IL+ T+V R
Sbjct: 667 IIIFVNQKKGCDVLAKSLEKMGYNACTLHGGKGQEQREFALSNLKAGAKDILVATDVAGR 726
Query: 563 GLNVPEVSLVIIYNAAKTIAQYVHXXXXXXXXXXXXXALSFVMVDELASAYILVKCMKEN 622
G+++ +VS+V+ Y+ AK I Y+H A++F+ ++ A Y L + + E+
Sbjct: 727 GIDIQDVSMVVNYDMAKNIEDYIHRIGRTGRAGKSGVAITFLTKEDSAVFYELKQAILES 786
Query: 623 ELSSVP 628
+SS P
Sbjct: 787 PVSSCP 792
>SPCC63.11 [A] KOG0333 U5 snRNP-like RNA helicase subunit
Length = 662
Score = 204 bits (518), Expect = 6e-52
Identities = 124/418 (29%), Positives = 209/418 (49%), Gaps = 30/418 (7%)
Query: 232 NIKISGKDCPKPVTKWSQLGLSSEIMDLISNELQFVTLTPIQCQAIPAIMSGRDVIGISK 291
NI I G D P P+ W + GL SE++ ++ ++ + + IQ AIP ++ +D+IGI++
Sbjct: 236 NISIKGDDLPNPLRNWEEAGLPSEMLKVLK-KVNYKEPSSIQRAAIPVLLQRKDLIGIAE 294
Query: 292 TGSGKTVAFLLPLVRQIKAQPPLAPDET--GPIGLILTPTRELAVQIQEEALKFCKXXXX 349
TGSGKT AF++PL+ I PPL GP ++L PTRELA QIQ E KF +
Sbjct: 295 TGSGKTAAFIIPLIIAISKLPPLTESNMHLGPYAVVLAPTRELAQQIQVEGNKFAEPLGF 354
Query: 350 XXXXXXXXXELKQQINELKRGVDIIVATPGRFIDLMTLNSGHLLSPTRISFVVMDEADRL 409
++Q ++ +G I+VATPGR +D + L ++ ++VVMDEADR+
Sbjct: 355 RCVSVVGGHAFEEQSFQMSQGAHIVVATPGRLLDCL---ERRLFVLSQCTYVVMDEADRM 411
Query: 410 FDLGFGPQVNQIMGCIRPD-------------------KQCVLFSATFPSKLKHFASRTL 450
D+GF VN+I+ + +Q ++FSAT P ++ + A L
Sbjct: 412 LDMGFEDDVNKILSSLPSSNASEKDGSILATANSSSSRRQTIMFSATLPPRVANLAKSYL 471
Query: 451 KNPIQITINSKSLINENIQQRVQIFDEEHVKFEFLLKRLSDRLALHRGEDEKTIIFVGSQ 510
P+ +TI + + ++QRV++ ++ K+ +R+ + L +R IIFV +
Sbjct: 472 IEPVMLTIGNIGQAVDRVEQRVEMISDDSKKW----RRVEEILESNRFSPP-IIIFVNLK 526
Query: 511 QXXXXXXXXXXXNGITTFPIHAGKPSAERLRNLQKFKETDNGILICTEVLSRGLNVPEVS 570
+ G +H K +R R +++ + IL+ T++ RG+++P VS
Sbjct: 527 RNIEAIAKQLNAIGWHAVTLHGSKSQEQRERAIEQLRNKTADILVATDIAGRGIDIPNVS 586
Query: 571 LVIIYNAAKTIAQYVHXXXXXXXXXXXXXALSFVMVDELASAYILVKCMKENELSSVP 628
LV+ YN AK+I Y H A++F+ ++ Y L + + + +P
Sbjct: 587 LVLNYNMAKSIEDYTHRIGRTGRAGKSGTAITFLGPEDTDVYYDLRVLLSRSAKAHIP 644
>At2g33730 [A] KOG0333 U5 snRNP-like RNA helicase subunit
Length = 733
Score = 203 bits (517), Expect = 8e-52
Identities = 135/431 (31%), Positives = 221/431 (50%), Gaps = 34/431 (7%)
Query: 218 MSEKDVEELRLSLDNIKISGKDCPKPVTKWSQLGLSSEIMDLISNELQFVTLTPIQCQAI 277
M+E+D R NI G P+P+ W + L+SE++ + + +PIQ AI
Sbjct: 287 MTERDWRIFREDF-NISYKGSRIPRPMRSWEESKLTSELLKAVERA-GYKKPSPIQMAAI 344
Query: 278 PAIMSGRDVIGISKTGSGKTVAFLLPLVRQIKAQPPLAPDET--GPIGLILTPTRELAVQ 335
P + RDVIGI++TGSGKT AF+LP++ I PP++ + GP +++ PTRELA Q
Sbjct: 345 PLGLQQRDVIGIAETGSGKTAAFVLPMLAYISRLPPMSEENETEGPYAVVMAPTRELAQQ 404
Query: 336 IQEEALKFCKXXXXXXXXXXXXXELKQQINELKRGVDIIVATPGRFIDLMTLNSGHLLSP 395
I+EE +KF +++Q ++ +G +I++ATPGR ID + L
Sbjct: 405 IEEETVKFAHYLGFRVTSIVGGQSIEEQGLKITQGCEIVIATPGRLIDCLERRYAVL--- 461
Query: 396 TRISFVVMDEADRLFDLGFGPQVNQIMGC-----IRPDKQ------------CVLFSATF 438
+ ++VV+DEADR+ D+GF PQV ++ ++P+ + +FSAT
Sbjct: 462 NQCNYVVLDEADRMIDMGFEPQVAGVLDAMPSSNLKPENEEEELDEKKIYRTTYMFSATM 521
Query: 439 PSKLKHFASRTLKNPIQITINSKSLINENIQQRVQIFDEEHVKFEFLLKRLSDRLALHRG 498
P ++ A + L+NP+ +TI + + I Q V I +E KF F L++L D L
Sbjct: 522 PPGVERLARKYLRNPVVVTIGTAGKTTDLISQHV-IMMKESEKF-FRLQKLLDELG---- 575
Query: 499 EDEKT-IIFVGSQQXXXXXXXXXXXNGITTFPIHAGKPSAERLRNLQKFKETDNGILICT 557
EKT I+FV +++ G +H GK +R +L+ F+ +L+ T
Sbjct: 576 --EKTAIVFVNTKKNCDSIAKNLDKAGYRVTTLHGGKSQEQREISLEGFRAKRYNVLVAT 633
Query: 558 EVLSRGLNVPEVSLVIIYNAAKTIAQYVHXXXXXXXXXXXXXALSFVMVDELASAYILVK 617
+V+ RG+++P+V+ VI Y+ K I Y H A SF+ + + Y L +
Sbjct: 634 DVVGRGIDIPDVAHVINYDMPKHIEMYTHRIGRTGRAGKSGVATSFLTLHDTEVFYDLKQ 693
Query: 618 CMKENELSSVP 628
+ ++ S+VP
Sbjct: 694 MLVQSN-SAVP 703
>ECU08g1080 [A] KOG0331 ATP-dependent RNA helicase
Length = 495
Score = 202 bits (513), Expect = 2e-51
Identities = 136/447 (30%), Positives = 228/447 (50%), Gaps = 20/447 (4%)
Query: 202 ITLNKCLYREPNDLGLMSEKDVEELRLSLDNIKISGKDCPKPVTKWSQLGLSSEIMDLIS 261
+ K Y+E + M+ +V R + + I + G + P P+ K+ + G SSE++ +
Sbjct: 45 VEFQKNFYQEAESISRMTPSEVSSFRKTNEMI-VKGTNVPHPIQKFEEAGFSSEVVSSLV 103
Query: 262 NELQFVTLTPIQCQAIPAIMSGRDVIGISKTGSGKTVAFLLPLVRQIKAQPPLAPDETGP 321
E F T IQ Q P +SGRD++GI++TGSGKT++F+LP + K Q PL + GP
Sbjct: 104 -EKGFSEPTAIQGQGWPMALSGRDMVGIAQTGSGKTLSFILPALVHAKDQQPLRRGD-GP 161
Query: 322 IGLILTPTRELAVQIQEEALKFCKXXXXXXXXXXXXXELKQQINELKRGVDIIVATPGRF 381
I L+L PTREL +QI++ +FC + QI L G ++++ATPGR
Sbjct: 162 IVLVLAPTRELVMQIKKVVDEFCGMFNLRSTAVYGGASSQPQIRALHEGAEVVIATPGRL 221
Query: 382 IDLMTLNSGHLLSPTRISFVVMDEADRLFDLGFGPQVNQIMGCIRPDKQCVLFSATFPSK 441
IDL + GH +R++F+V+DEADR+ D+GF PQ+ +I+ ++Q +++SAT+P +
Sbjct: 222 IDLH--DQGHA-PLSRVTFLVLDEADRMLDMGFEPQLRKIIPKTNANRQTLMWSATWPRE 278
Query: 442 LKHFASRTLKNPIQITINSKSL-INENIQQRVQIFDEEHVKFEFLLKRLSDRL--ALHRG 498
++ A + IQ+ + ++ L N I+Q V++ + D+L L
Sbjct: 279 VRGLAESYMNEYIQVVVGNEELKTNSKIKQIVEVCSG---------REKEDKLIGVLDNF 329
Query: 499 EDEKTIIFVGSQQXXXXXXXXXXXNGITTFPIHAGKPSAERLRNLQKFKETDNGILICTE 558
+ +K I+F ++ +G +H K R + L F+ ILI TE
Sbjct: 330 KGDKVIVFCNMKRTCDDLEYVLNRSGYGAAALHGDKSQNIRDKVLDDFRSGRRPILIATE 389
Query: 559 VLSRGLNVPEVSLVIIYNAAKTIAQYVH-XXXXXXXXXXXXXALSFVMVDELASAYILVK 617
V RGL+V +V LVI ++ + YVH + +F V + A+A L++
Sbjct: 390 VAGRGLDVNDVKLVINFDFPGSCEDYVHRIGRTARGNTKEGISHTFFTVGDKANARELIR 449
Query: 618 CMKENELSSVPMVVYQKLKEMNDEFSS 644
++E +VP + ++ ND + S
Sbjct: 450 MLREAN-QTVPSDLEDMVRVSNDRYGS 475
>7298459 [A] KOG0333 U5 snRNP-like RNA helicase subunit
Length = 802
Score = 197 bits (502), Expect = 4e-50
Identities = 131/397 (32%), Positives = 202/397 (49%), Gaps = 40/397 (10%)
Query: 218 MSEKDVEELRLSLDNIKISGKDCPKPVTKWSQLGLSSEIMDLISNELQFVTLTPIQCQAI 277
M+E+D R N+ I G P P+ W++ G EI+D+I +++ + TPIQ QAI
Sbjct: 368 MTERDWRIFREDY-NVTIKGGRIPNPIRSWNESGFPKEIIDII-DKVGYKEPTPIQRQAI 425
Query: 278 PAIMSGRDVIGISKTGSGKTVAFLLPLVRQIKAQPP---LAPDETGPIGLILTPTRELAV 334
P + RD+IG+++TGSGKT+AFL+PL+ I++ P L + GP +I+ PTRELA
Sbjct: 426 PIGLQNRDIIGVAETGSGKTLAFLIPLLSWIQSLPKIERLEDVDQGPYAIIMAPTRELAQ 485
Query: 335 QIQEEALKFCKXXXXXXXXXXXXXELKQQINELKRGVDIIVATPGRFIDLMTLNSGHLLS 394
QI+EE KF + ++Q L+ G +I++ATPGR ID++ L
Sbjct: 486 QIEEETTKFGQPLGIRTVVVVGGLSREEQGFRLRLGCEIVIATPGRLIDVL---ENRYLV 542
Query: 395 PTRISFVVMDEADRLFDLGFGPQVNQIMGC-----IRPD--------------------K 429
+ +++V+DEADR+ D+GF P V +I+ ++PD +
Sbjct: 543 LNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEEAEDETKLMENFYTKKKYR 602
Query: 430 QCVLFSATFPSKLKHFASRTLKNPIQITINSKSLINENIQQRVQIFDEEHVKFEFLLKRL 489
Q V+F+AT P ++ A L+ P + I S E +Q V + E + K+L
Sbjct: 603 QTVMFTATMPPAVERLARTYLRRPATVYIGSVGKPTERTEQIVYMMGENDKR-----KKL 657
Query: 490 SDRLALHRGEDEKTIIFVGSQQXXXXXXXXXXXNGITTFPIHAGKPSAERLRNLQKFKET 549
+ L+ R D IIFV ++ G + +H GK +R L K
Sbjct: 658 MEILS--RKIDPPVIIFVNQKKGADVLAKGLEKLGYNSCTLHGGKGQEQREYALAALKSG 715
Query: 550 DNGILICTEVLSRGLNVPEVSLVIIYNAAKTIAQYVH 586
IL+ T+V RG+++ +VSLVI Y+ AKTI Y H
Sbjct: 716 AKDILVATDVAGRGIDIKDVSLVINYDMAKTIEDYTH 752
>At3g58570 [A] KOG0335 ATP-dependent RNA helicase
Length = 646
Score = 196 bits (499), Expect = 9e-50
Identities = 129/397 (32%), Positives = 201/397 (50%), Gaps = 12/397 (3%)
Query: 233 IKISGKDCPKPVTKWSQLGLSSEIMDLISNELQFVTLTPIQCQAIPAIMSGRDVIGISKT 292
I+ SG + P PV ++++ L E ++L ++V TP+Q AIP + +GRD++ ++T
Sbjct: 134 IETSGDNVPPPVNTFAEIDLG-EALNLNIQRCKYVKPTPVQRNAIPILAAGRDLMACAQT 192
Query: 293 GSGKTVAFLLPLVRQIKA----QPPLAPDETGPIGLILTPTRELAVQIQEEALKFCKXXX 348
GSGKT AF P++ I + P P+ +IL+PTRELA QI +EA KF
Sbjct: 193 GSGKTAAFCFPIISGIMKDQHIERPRGVRGVYPLAVILSPTRELACQIHDEARKFSYQTG 252
Query: 349 XXXXXXXXXXELKQQINELKRGVDIIVATPGRFIDLMTLNSGHLLSPTRISFVVMDEADR 408
+ QQI EL+RGVDI+VATPGR DL+ +S + F+ +DEADR
Sbjct: 253 VKVVVAYGGTPVNQQIRELERGVDILVATPGRLNDLLERGR---VSLQMVRFLALDEADR 309
Query: 409 LFDLGFGPQVNQI---MGCIRPD-KQCVLFSATFPSKLKHFASRTLKNPIQITINSKSLI 464
+ D+GF PQ+ +I M P +Q +LFSATFP +++ AS L N I + +
Sbjct: 310 MLDMGFEPQIRKIVQQMDMPPPGVRQTMLFSATFPREIQRLASDFLSNYIFLAVGRVGSS 369
Query: 465 NENIQQRVQIFDEEHVKFEFLLKRLSDRLALHRGEDEKTIIFVGSQQXXXXXXXXXXXNG 524
+ I QRV+ + + + + R ++G+ T++FV +++ NG
Sbjct: 370 TDLIVQRVEFVHDSDKRSHLMDLLHAQRENGNQGKQALTLVFVETKKGADSLENWLCING 429
Query: 525 ITTFPIHAGKPSAERLRNLQKFKETDNGILICTEVLSRGLNVPEVSLVIIYNAAKTIAQY 584
IH + ER L+ FK IL+ T+V +RGL++P V+ V+ ++ I Y
Sbjct: 430 FPATTIHGDRSQQEREVALRSFKTGRTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDY 489
Query: 585 VHXXXXXXXXXXXXXALSFVMVDELASAYILVKCMKE 621
VH A +F + A L + M+E
Sbjct: 490 VHRIGRTGRAGNSGLATAFFNDNNTTMAKPLAELMQE 526
>At2g42520 [A] KOG0335 ATP-dependent RNA helicase
Length = 633
Score = 195 bits (496), Expect = 2e-49
Identities = 128/397 (32%), Positives = 201/397 (50%), Gaps = 12/397 (3%)
Query: 233 IKISGKDCPKPVTKWSQLGLSSEIMDLISNELQFVTLTPIQCQAIPAIMSGRDVIGISKT 292
I+ SG + P PV ++++ L E ++L ++V TP+Q AIP ++ GRD++ ++T
Sbjct: 147 IETSGDNVPPPVNTFAEIDLG-EALNLNIRRCKYVKPTPVQRHAIPILLEGRDLMACAQT 205
Query: 293 GSGKTVAFLLPLVRQIK----AQPPLAPDETGPIGLILTPTRELAVQIQEEALKFCKXXX 348
GSGKT AF P++ I Q P P+ +IL+PTRELA QI +EA KF
Sbjct: 206 GSGKTAAFCFPIISGIMKDQHVQRPRGSRTVYPLAVILSPTRELASQIHDEAKKFSYQTG 265
Query: 349 XXXXXXXXXXELKQQINELKRGVDIIVATPGRFIDLMTLNSGHLLSPTRISFVVMDEADR 408
+ QQ+ EL+RGVDI+VATPGR DL+ +S I F+ +DEADR
Sbjct: 266 VKVVVAYGGTPINQQLRELERGVDILVATPGRLNDLL---ERARVSMQMIRFLALDEADR 322
Query: 409 LFDLGFGPQVNQIMGCI----RPDKQCVLFSATFPSKLKHFASRTLKNPIQITINSKSLI 464
+ D+GF PQ+ +I+ + R +Q +LFSATFP +++ A+ L N I + +
Sbjct: 323 MLDMGFEPQIRKIVEQMDMPPRGVRQTLLFSATFPREIQRLAADFLANYIFLAVGRVGSS 382
Query: 465 NENIQQRVQIFDEEHVKFEFLLKRLSDRLALHRGEDEKTIIFVGSQQXXXXXXXXXXXNG 524
+ I QRV+ + + + + R +G+ T++FV +++ NG
Sbjct: 383 TDLIVQRVEFVLDSDKRSHLMDLLHAQRENGIQGKQALTLVFVETKRGADSLENWLCING 442
Query: 525 ITTFPIHAGKPSAERLRNLQKFKETDNGILICTEVLSRGLNVPEVSLVIIYNAAKTIAQY 584
IH + ER L+ FK IL+ T+V +RGL++P V+ V+ ++ I Y
Sbjct: 443 FPATSIHGDRTQQEREVALKAFKSGRTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDY 502
Query: 585 VHXXXXXXXXXXXXXALSFVMVDELASAYILVKCMKE 621
VH A +F + A L + M+E
Sbjct: 503 VHRIGRTGRAGKSGLATAFFNDGNTSLARPLAELMQE 539
>YPL119c [A] KOG0335 ATP-dependent RNA helicase
Length = 617
Score = 194 bits (494), Expect = 3e-49
Identities = 138/406 (33%), Positives = 199/406 (48%), Gaps = 29/406 (7%)
Query: 216 GLMSEKDVEELRLSLDN-----IKISGKDCPKPVTKWSQLGLSSEIMDLISNELQFVTLT 270
G+ + D + DN + SGKD P+P+ +S L +M+ I F T
Sbjct: 120 GVHDDPDYHSSGIKFDNYDNIPVDASGKDVPEPILDFSSPPLDELLMENIKLA-SFTKPT 178
Query: 271 PIQCQAIPAIMSGRDVIGISKTGSGKTVAFLLPLVRQI-KAQPPLAPDETG--------P 321
P+Q +IP + GRD++ ++TGSGKT FL PL ++ ++ P P++ P
Sbjct: 179 PVQKYSIPIVTKGRDLMACAQTGSGKTGGFLFPLFTELFRSGPSPVPEKAQSFYSRKGYP 238
Query: 322 IGLILTPTRELAVQIQEEALKFCKXXXXXXXXXXXXXELKQQINELKRGVDIIVATPGRF 381
L+L PTRELA QI EEA KF + Q+ E+ RG D++VATPGR
Sbjct: 239 SALVLAPTRELATQIFEEARKFTYRSWVRPCVVYGGAPIGNQMREVDRGCDLLVATPGRL 298
Query: 382 IDLMTLNSGHLLSPTRISFVVMDEADRLFDLGFGPQVNQIMG-CIRP---DKQCVLFSAT 437
DL+ +S I ++V+DEADR+ D+GF PQ+ I+ C P ++Q ++FSAT
Sbjct: 299 NDLLERGK---VSLANIKYLVLDEADRMLDMGFEPQIRHIVEECDMPSVENRQTLMFSAT 355
Query: 438 FPSKLKHFASRTLKNPIQITINSKSLINENIQQRVQIFDEEHVKFEFLLKRLSDRLALHR 497
FP ++H A L N I +++ +ENI QR+ D+ K LL LS A H+
Sbjct: 356 FPVDIQHLARDFLDNYIFLSVGRVGSTSENITQRILYVDDMDKK-SALLDLLS---AEHK 411
Query: 498 GEDEKTIIFVGSQQXXXXXXXXXXXNGITTFPIHAGKPSAERLRNLQKFKETDNGILICT 557
G T+IFV +++ IH + AER R L FK IL+ T
Sbjct: 412 G---LTLIFVETKRMADQLTDFLIMQNFKATAIHGDRTQAERERALSAFKANVADILVAT 468
Query: 558 EVLSRGLNVPEVSLVIIYNAAKTIAQYVHXXXXXXXXXXXXXALSF 603
V +RGL++P V+ VI Y+ I YVH A SF
Sbjct: 469 AVAARGLDIPNVTHVINYDLPSDIDDYVHRIGRTGRAGNTGVATSF 514
>At5g51280 [A] KOG0341 DEAD-box protein abstrakt
Length = 591
Score = 193 bits (490), Expect = 1e-48
Identities = 130/441 (29%), Positives = 214/441 (48%), Gaps = 27/441 (6%)
Query: 209 YREPNDLGLMSEKDVEELRLSLDNIKISGKDCPKPVTKWSQLGLSSEIMDLISNELQFVT 268
++ P + MS K + +R +I ++G D P P+ + + ++D + E V
Sbjct: 111 WKPPLHIRKMSSKQRDLIRKQW-HIIVNGDDIPPPIKNFKDMKFPRPVLDTLK-EKGIVQ 168
Query: 269 LTPIQCQAIPAIMSGRDVIGISKTGSGKTVAFLLPLVR---QIKAQPPLAPDETGPIGLI 325
TPIQ Q +P I++GRD+IGI+ TGSGKT+ F+LP++ Q + P+A E GPIGLI
Sbjct: 169 PTPIQVQGLPVILAGRDMIGIAFTGSGKTLVFVLPMIMIALQEEMMMPIAAGE-GPIGLI 227
Query: 326 LTPTRELAVQIQEEALKFCKXXXXX------XXXXXXXXELKQQINELKRGVDIIVATPG 379
+ P+RELA Q E +F +++ Q+ +KRGV I+VATPG
Sbjct: 228 VCPSRELARQTYEVVEQFVAPLVEAGYPPLRSLLCIGGIDMRSQLEVVKRGVHIVVATPG 287
Query: 380 RFIDLMTLNSGHLLSPTRISFVVMDEADRLFDLGFGPQVNQIMGCIRPDKQCVLFSATFP 439
R D++ +S ++ +DEADRL DLGF + ++ + +Q +LFSAT P
Sbjct: 288 RLKDMLAKKK---MSLDACRYLTLDEADRLVDLGFEDDIREVFDHFKSQRQTLLFSATMP 344
Query: 440 SKLKHFASRTLKNPIQITINSKSLINENIQQRVQIFDEEHVKFEFLLKRLSDRLALHRGE 499
+K++ FA L P+ + + N ++ Q V+ +E K +LL+ L +
Sbjct: 345 TKIQIFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQE-AKIVYLLECL-------QKT 396
Query: 500 DEKTIIFVGSQQXXXXXXXXXXXNGITTFPIHAGKPSAERLRNLQKFKETDNGILICTEV 559
+IF ++ G+ IH GK +R + FK +L+ T+V
Sbjct: 397 SPPVLIFCENKADVDDIHEYLLLKGVEAVAIHGGKDQEDREYAISSFKAGKKDVLVATDV 456
Query: 560 LSRGLNVPEVSLVIIYNAAKTIAQYVHXXXXXXXXXXXXXALSFVMVDELASAYILVKCM 619
S+GL+ P++ VI Y+ I YVH A +F+ ++ + + +K +
Sbjct: 457 ASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHL 516
Query: 620 KENELSSVPMVVYQKLKEMND 640
+ +P V L E+ND
Sbjct: 517 LQEAKQRIPPV----LAELND 533
>At3g06480 [A] KOG0331 ATP-dependent RNA helicase
Length = 1088
Score = 192 bits (488), Expect = 2e-48
Identities = 134/449 (29%), Positives = 220/449 (48%), Gaps = 37/449 (8%)
Query: 233 IKISGKDCPKPVTKWSQLGLSSEIM-DLISNELQFVTLTPIQCQAIPAIMSGRDVIGISK 291
+ +G++ P P + GL EI+ +L+S F + TPIQ Q P + RD++ I+K
Sbjct: 423 VTTTGENIPAPYITFESSGLPPEILRELLS--AGFPSPTPIQAQTWPIALQSRDIVAIAK 480
Query: 292 TGSGKTVAFLLP---LVRQIKAQPPLAPDETGPIGLILTPTRELAVQIQEEALKFCKXXX 348
TGSGKT+ +L+P L+R + GP LIL PTRELA QIQ+EAL+F +
Sbjct: 481 TGSGKTLGYLIPAFILLRHCRND-----SRNGPTVLILAPTRELATQIQDEALRFGRSSR 535
Query: 349 XXXXXXXXXXELKQQINELKRGVDIIVATPGRFIDLMTLNSGHLLSPTRISFVVMDEADR 408
Q+ EL+RG DI+VATPGR D++ + ++ ++S +V+DEADR
Sbjct: 536 ISCTCLYGGAPKGPQLKELERGADIVVATPGRLNDILEMK---MIDFQQVSLLVLDEADR 592
Query: 409 LFDLGFGPQVNQIMGCIRPDKQCVLFSATFPSKLKHFASRTLKNPIQITIN--SKSLINE 466
+ D+GF PQ+ +I+ I P +Q ++++AT+P +++ AS L NP+Q+ I + N+
Sbjct: 593 MLDMGFEPQIRKIVNEIPPRRQTLMYTATWPKEVRKIASDLLVNPVQVNIGRVDELAANK 652
Query: 467 NIQQRVQIFDEEHVKFEFLLKRLSDRLALHRGEDEKTIIFVGSQQXXXXXXXXXXXNGIT 526
I Q V++ + +R +++ + K IIF +++ +
Sbjct: 653 AITQYVEVVPQME------KERRLEQILRSQERGSKVIIFCSTKRLCDHLARSVGRH-FG 705
Query: 527 TFPIHAGKPSAERLRNLQKFKETDNGILICTEVLSRGLNVPEVSLVIIYNAAKTIAQYVH 586
IH K ER L +F+ + +LI T+V +RGL++ ++ +VI Y+ + YVH
Sbjct: 706 AVVIHGDKTQGERDWVLNQFRSGKSCVLIATDVAARGLDIKDIRVVINYDFPTGVEDYVH 765
Query: 587 XXXXXXXXXXXXXALSFVMVDELASAYILVKCMKENELSSVPMV--------------VY 632
A +F + A L+K ++ P V
Sbjct: 766 RIGRTGRAGATGVAFTFFTEQDWKYAPDLIKVLEGANQQVPPQVRDIAMRGGGGGGPGYS 825
Query: 633 QKLKEMNDEFSSGLKTGKYRLIQGFGGKG 661
Q + M + F SG ++ GFGG+G
Sbjct: 826 QDRRGMVNRFDSGGGGTRWDSGGGFGGRG 854
>Hs22057246 [A] KOG0336 ATP-dependent RNA helicase
Length = 631
Score = 190 bits (482), Expect = 9e-48
Identities = 132/454 (29%), Positives = 230/454 (50%), Gaps = 20/454 (4%)
Query: 197 KVLNLITLNKCLYREPNDLGLMSEKDV-----EELRLSLDNIKISGKDC-PKPVTKWSQL 250
K +L + K Y E MSE V E ++ D++K K PKP ++
Sbjct: 167 KWADLPPVKKNFYIESKATSCMSEMQVINWRKENFNITCDDLKSGEKRLIPKPTCRFKDA 226
Query: 251 GLSSEIMDLISNELQ--FVTLTPIQCQAIPAIMSGRDVIGISKTGSGKTVAFLLPLVRQI 308
+ DL+ + ++ V TPIQ QA P I+ G D+I +++TG+GKT+++L+P +
Sbjct: 227 --FQQYPDLLKSIIRVGIVKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHL 284
Query: 309 KAQPPLAPDETGPIGLILTPTRELAVQIQEEALKFCKXXXXXXXXXXXXXELKQQINELK 368
+QP GP L+LTPTRELA+ ++ E K+ QI ++
Sbjct: 285 DSQPISREQRNGPGMLVLTPTRELALHVEAECSKY-SYKGLKSICIYGGRNRNGQIEDIS 343
Query: 369 RGVDIIVATPGRFIDLMTLNSGHLLSPTRISFVVMDEADRLFDLGFGPQVNQIMGCIRPD 428
+GVDII+ATPGR DL NS +L S I+++V+DEAD++ D+ F PQ+ +I+ +RPD
Sbjct: 344 KGVDIIIATPGRLNDLQMNNSVNLRS---ITYLVIDEADKMLDMEFEPQIRKILLDVRPD 400
Query: 429 KQCVLFSATFPSKLKHFASRTLKNPIQITINSKSLINENIQQRVQIFDEEHVKFEFLLKR 488
+Q V+ SAT+P ++ A LK+P+ + + + +L+ N ++ I E K +
Sbjct: 401 RQTVMTSATWPDTVRQLALSYLKDPMIVYVGNLNLVAVNTVKQNIIVTTEKEK-----RA 455
Query: 489 LSDRLALHRGEDEKTIIFVGSQQXXXXXXXXXXXNGITTFPIHAGKPSAERLRNLQKFKE 548
L+ + ++K I+FV + GI+ +H +++ R ++ FK
Sbjct: 456 LTQEFVENMSPNDKVIMFVSQKHIADDLSSDFNIQGISAESLHGNSEQSDQERAVEDFKS 515
Query: 549 TDNGILICTEVLSRGLNVPEVSLVIIYNAAKTIAQYVHXXXXXXXXXXXXXALSFVMVDE 608
+ ILI T+++SRGL++ +V+ V Y+ + I YVH +++ + +
Sbjct: 516 GNIKILITTDIVSRGLDLNDVTHVYNYDFPRNIDVYVHRVGYIGRTGKTGTSVTLITQRD 575
Query: 609 LASAYILVKCM-KENELSSVPMVVYQKLKEMNDE 641
A L+K + + N+ +VV + ++N +
Sbjct: 576 SKMAGELIKILDRANQSVPEDLVVMAEQYKLNQQ 609
>YOR204w [A] KOG0335 ATP-dependent RNA helicase
Length = 604
Score = 189 bits (480), Expect = 1e-47
Identities = 134/450 (29%), Positives = 220/450 (48%), Gaps = 45/450 (10%)
Query: 216 GLMSEKDVEELRLSLDN-----IKISGKDCPKPVTKWSQLGLSSEIMDLISNELQFVTLT 270
G+ + + + ++ DN + SGKD P+P+T+++ L +++ I +F T
Sbjct: 108 GVPEDPNFQSSGINFDNYDDIPVDASGKDVPEPITEFTSPPLDGLLLENIKLA-RFTKPT 166
Query: 271 PIQCQAIPAIMSGRDVIGISKTGSGKTVAFLLPLVRQ-IKAQPPLAPDETG--------P 321
P+Q ++P + +GRD++ ++TGSGKT FL P++ + K P P+ G P
Sbjct: 167 PVQKYSVPIVANGRDLMACAQTGSGKTGGFLFPVLSESFKTGPSPQPESQGSFYQRKAYP 226
Query: 322 IGLILTPTRELAVQIQEEALKFCKXXXXXXXXXXXXXELKQQINELKRGVDIIVATPGRF 381
+I+ PTRELA QI +EA KF + Q+ E++RG D++VATPGR
Sbjct: 227 TAVIMAPTRELATQIFDEAKKFTYRSWVKACVVYGGSPIGNQLREIERGCDLLVATPGRL 286
Query: 382 IDLMTLNSGHLLSPTRISFVVMDEADRLFDLGFGPQVNQIM-GC-IRP--DKQCVLFSAT 437
DL+ +S + ++V+DEADR+ D+GF PQ+ I+ C + P ++Q ++FSAT
Sbjct: 287 NDLLERGK---ISLANVKYLVLDEADRMLDMGFEPQIRHIVEDCDMTPVGERQTLMFSAT 343
Query: 438 FPSKLKHFASRTLKNPIQITINSKSLINENIQQRVQIFDEEHVKFEFLLKRLSDRLALHR 497
FP+ ++H A L + I +++ +ENI Q+V ++ E K LL LS
Sbjct: 344 FPADIQHLARDFLSDYIFLSVGRVGSTSENITQKV-LYVENQDKKSALLDLLS------A 396
Query: 498 GEDEKTIIFVGSQQXXXXXXXXXXXNGITTFPIHAGKPSAERLRNLQKFKETDNGILICT 557
D T+IFV +++ IH + +ER R L F+ +L+ T
Sbjct: 397 STDGLTLIFVETKRMADQLTDFLIMQNFRATAIHGDRTQSERERALAAFRSGAATLLVAT 456
Query: 558 EVLSRGLNVPEVSLVIIYNAAKTIAQYVHXXXXXXXXXXXXXALSFVMVDELASAYILVK 617
V +RGL++P V+ VI Y+ + YVH A +F
Sbjct: 457 AVAARGLDIPNVTHVINYDLPSDVDDYVHRIGRTGRAGNTGLATAFF------------- 503
Query: 618 CMKENELSSVPMVVYQKLKEMNDEFSSGLK 647
+E S++ +++ L E N E S LK
Sbjct: 504 ---NSENSNIVKGLHEILTEANQEVPSFLK 530
>Hs13514813 [A] KOG0335 ATP-dependent RNA helicase
Length = 662
Score = 187 bits (476), Expect = 4e-47
Identities = 138/444 (31%), Positives = 216/444 (48%), Gaps = 27/444 (6%)
Query: 233 IKISGKDCPKPVTKWSQLGLSSEIMDLISNELQFVTLTPIQCQAIPAIMSGRDVIGISKT 292
++ +G +CP + +S + + IM I ++ TP+Q AIP I RD++ ++T
Sbjct: 168 VEATGNNCPPHIESFSDVEMGEIIMGNIELT-RYTRPTPVQKHAIPIIKEKRDLMACAQT 226
Query: 293 GSGKTVAFLLPLVRQIKAQPP----LAPDETG--------PIGLILTPTRELAVQIQEEA 340
GSGKT AFLLP++ QI + P A E G PI L+L PTRELAVQI EEA
Sbjct: 227 GSGKTAAFLLPILSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEA 286
Query: 341 LKFCKXXXXXXXXXXXXXELKQQINELKRGVDIIVATPGRFIDLMTLNSGHLLSPTRISF 400
KF ++ QQI +L+RG ++VATPGR +D+M + +
Sbjct: 287 RKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGK---IGLDFCKY 343
Query: 401 VVMDEADRLFDLGFGPQVNQIM--GCIRPD--KQCVLFSATFPSKLKHFASRTLKNPIQI 456
+V+DEADR+ D+GF PQ+ +I+ + P + ++FSATFP +++ A L I +
Sbjct: 344 LVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFL 403
Query: 457 TINSKSLINENIQQRVQIFDEEHVKFEFLLKRLSDRLALHRGEDEKTIIFVGSQQXXXXX 516
+ +ENI Q+V ++ EE K FLL L+ G+D T++FV +++
Sbjct: 404 AVGRVGSTSENITQKV-VWVEESDKRSFLLDLLN-----ATGKDSLTLVFVETKKGADSL 457
Query: 517 XXXXXXNGITTFPIHAGKPSAERLRNLQKFKETDNGILICTEVLSRGLNVPEVSLVIIYN 576
G IH + +R L +F+ + IL+ T V +RGL++ V VI ++
Sbjct: 458 EDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFD 517
Query: 577 AAKTIAQYVHXXXXXXXXXXXXXALSFVMVDELASAYILVKCMKENELSSVPMVVYQKLK 636
I +YVH A SF + L+ + E + VP +
Sbjct: 518 LPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVEAK-QEVPSWLENMAY 576
Query: 637 EMNDEFSSGLKTGKYRLIQGFGGK 660
E + + SS ++ R GFG +
Sbjct: 577 EHHYKGSSRGRSKSSRFSGGFGAR 600
>Hs10346129 [A] KOG0336 ATP-dependent RNA helicase
Length = 648
Score = 186 bits (473), Expect = 1e-46
Identities = 126/399 (31%), Positives = 206/399 (51%), Gaps = 19/399 (4%)
Query: 196 SKVLNLITLNKCLYREPNDLGLMSEKDVEELR-----LSLDNIKISGK-DCPKPVTKWSQ 249
+K +L + K Y+E MS+ + + R ++ D++K K P P +
Sbjct: 186 TKWADLPPIKKNFYKESTATSAMSKVEADSWRKENFNITWDDLKDGEKRPIPNPTCTFDD 245
Query: 250 -LGLSSEIMDLISNELQFVTLTPIQCQAIPAIMSGRDVIGISKTGSGKTVAFLLPLVRQI 308
E+M+ I + F TPIQ QA P ++ G D+IG+++TG+GKT+ +L+P +
Sbjct: 246 AFQCYPEVMENIK-KAGFQKPTPIQSQAWPIVLQGIDLIGVAQTGTGKTLCYLMPGFIHL 304
Query: 309 KAQPPLAPDETGPIGLILTPTRELAVQIQEEALKFCKXXXXXXXXXXXXXELKQQINELK 368
QP L P L+LTPTRELA+Q++ E K+ +QI ELK
Sbjct: 305 VLQPSLKGQRNRPGMLVLTPTRELALQVEGECCKY-SYKGLRSVCVYGGGNRDEQIEELK 363
Query: 369 RGVDIIVATPGRFIDLMTLNSGHLLSPTRISFVVMDEADRLFDLGFGPQVNQIMGCIRPD 428
+GVDII+ATPGR DL N +L I+++V+DEAD++ D+GF PQ+ +I+ +RPD
Sbjct: 364 KGVDIIIATPGRLNDLQMSNFVNL---KNITYLVLDEADKMLDMGFEPQIMKILLDVRPD 420
Query: 429 KQCVLFSATFPSKLKHFASRTLKNPIQITINSKSLIN-ENIQQRVQIFDEEHVKFEFLLK 487
+Q V+ SAT+P + A LK P+ + + + L+ +++Q + + EE K+ +
Sbjct: 421 RQTVMTSATWPHSVHRLAQSYLKEPMIVYVGTLDLVAVSSVKQNIIVTTEEE-KWSHMQT 479
Query: 488 RLSDRLALHRGEDEKTIIFVGSQQXXXXXXXXXXXNGITTFPIHAGKPSAERLRNLQKFK 547
L +K I+FV + I+ +H + +R + L+ FK
Sbjct: 480 FLQS-----MSSTDKVIVFVSRKAVADHLSSDLILGNISVESLHGDREQRDREKALENFK 534
Query: 548 ETDNGILICTEVLSRGLNVPEVSLVIIYNAAKTIAQYVH 586
ILI T++ SRGL+V +V+ V ++ + I +YVH
Sbjct: 535 TGKVRILIATDLASRGLDVHDVTHVYNFDFPRNIEEYVH 573
>At3g01540 [A] KOG0331 ATP-dependent RNA helicase
Length = 619
Score = 186 bits (472), Expect = 1e-46
Identities = 131/436 (30%), Positives = 216/436 (49%), Gaps = 25/436 (5%)
Query: 233 IKISGKDCPKPVTKWSQLGLSSEIMDLISNELQFVTLTPIQCQAIPAIMSGRDVIGISKT 292
I +SG P P+ + G E++ + + F TPIQ Q+ P M GRD++ I+KT
Sbjct: 146 ITVSGGQVPPPLMSFEATGFPPELLREVLSA-GFSAPTPIQAQSWPIAMQGRDIVAIAKT 204
Query: 293 GSGKTVAFLLPLVRQIKAQPPLAPDETGPIGLILTPTRELAVQIQEEALKFCKXXXXXXX 352
GSGKT+ +L+P + Q GP L+L+PTRELA QIQEEA+KF +
Sbjct: 205 GSGKTLGYLIPGFLHL--QRIRNDSRMGPTILVLSPTRELATQIQEEAVKFGRSSRISCT 262
Query: 353 XXXXXXELKQQINELKRGVDIIVATPGRFIDLMTLNSGHLLSPTRISFVVMDEADRLFDL 412
Q+ +L+RG DI+VATPGR D++ + +S +IS++V+DEADR+ D+
Sbjct: 263 CLYGGAPKGPQLRDLERGADIVVATPGRLNDILEMRR---ISLRQISYLVLDEADRMLDM 319
Query: 413 GFGPQVNQIMGCIRPDKQCVLFSATFPSKLKHFASRTLKNPIQITINS--KSLINENIQQ 470
GF PQ+ +I+ I +Q ++++AT+P ++ A+ L NP Q+ I + + + N++I Q
Sbjct: 320 GFEPQIRKIVKEIPTKRQTLMYTATWPKGVRKIAADLLVNPAQVNIGNVDELVANKSITQ 379
Query: 471 RVQIFD--EEHVKFEFLLKRLSDRLALHRGEDEKTIIFVGSQQXXXXXXXXXXXNGITTF 528
+++ E+ + E +L+ + K IIF +++
Sbjct: 380 HIEVVAPMEKQRRLEQILR--------SQEPGSKVIIFCSTKRMCDQLTRNLTRQ-FGAA 430
Query: 529 PIHAGKPSAERLRNLQKFKETDNGILICTEVLSRGLNVPEVSLVIIYNAAKTIAQYVHXX 588
IH K ER L +F+ +L+ T+V +RGL+V ++ V+ Y+ + YVH
Sbjct: 431 AIHGDKSQPERDNVLNQFRSGRTPVLVATDVAARGLDVKDIRAVVNYDFPNGVEDYVHRI 490
Query: 589 XXXXXXXXXXXALSFVMVDELASAYILVKCMKENELSSVPMVVYQKLKEMNDEFSSGL-K 647
A +F + A L+K + E VP +++EM G+ K
Sbjct: 491 GRTGRAGATGQAFTFFGDQDSKHASDLIKIL-EGANQRVP----PQIREMATRGGGGMNK 545
Query: 648 TGKYRLIQGFGGKGLD 663
++ G G+G D
Sbjct: 546 FSRWGPPSGGRGRGGD 561
>Hs13514809 [A] KOG0335 ATP-dependent RNA helicase
Length = 660
Score = 185 bits (469), Expect = 3e-46
Identities = 139/455 (30%), Positives = 211/455 (45%), Gaps = 36/455 (7%)
Query: 233 IKISGKDCPKPVTKWSQLGLSSEIMDLISNELQFVTLTPIQCQAIPAIMSGRDVIGISKT 292
++ +G +CP + +S + + IM I ++ TP+Q AIP I RD++ ++T
Sbjct: 166 VEATGSNCPPHIENFSDIDMGEIIMGNIELT-RYTRPTPVQKHAIPIIKGKRDLMACAQT 224
Query: 293 GSGKTVAFLLPLVRQIKAQPP----LAPDETG--------PIGLILTPTRELAVQIQEEA 340
GSGKT AFLLP++ QI P A E G PI L+L PTRELAVQI EEA
Sbjct: 225 GSGKTAAFLLPILSQIYTDGPGEALKAVKENGRYGRRKQYPISLVLAPTRELAVQIYEEA 284
Query: 341 LKFCKXXXXXXXXXXXXXELKQQINELKRGVDIIVATPGRFIDLMTLNSGHLLSPTRISF 400
KF ++ QQI +L+RG ++VATPGR +D+M + +
Sbjct: 285 RKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGK---IGLDFCKY 341
Query: 401 VVMDEADRLFDLGFGPQVNQIM--GCIRPD--KQCVLFSATFPSKLKHFASRTLKNPIQI 456
+V+DEADR+ D+GF PQ+ +I+ + P + ++FSATFP +++ A L I +
Sbjct: 342 LVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFL 401
Query: 457 TINSKSLINENIQQRVQIFDEEHVKFEFLLKRLSDRLALHRGEDEKTIIFVGSQQXXXXX 516
+ +ENI Q+V ++ E+ K FLL L G D T++FV +++
Sbjct: 402 AVGRVGSTSENITQKV-VWVEDLDKRSFLLDILG-----ATGSDSLTLVFVETKKGADSL 455
Query: 517 XXXXXXNGITTFPIHAGKPSAERLRNLQKFKETDNGILICTEVLSRGLNVPEVSLVIIYN 576
G IH + +R L +F+ + IL+ T V +RGL++ V VI ++
Sbjct: 456 EDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVRHVINFD 515
Query: 577 AAKTIAQYVHXXXXXXXXXXXXXALSFV----------MVDELASAYILVKCMKENELSS 626
I +YVH A SF ++D L A V EN
Sbjct: 516 LPSDIEEYVHRIGRTGRVGNLGLATSFFNEKNMNITKDLLDLLVEAKQEVPSWLENMAYE 575
Query: 627 VPMVVYQKLKEMNDEFSSGLKTGKYRLIQGFGGKG 661
+ + ++ FS G YR G G
Sbjct: 576 HHYKGGSRGRSKSNRFSGGFGARDYRQSSGSSSSG 610
>7299061 [A] KOG0335 ATP-dependent RNA helicase
Length = 798
Score = 185 bits (469), Expect = 3e-46
Identities = 125/385 (32%), Positives = 197/385 (50%), Gaps = 19/385 (4%)
Query: 233 IKISGKDCPKPVTKWSQLGLSSEIMDLISNELQFVTLTPIQCQAIPAIMSGRDVIGISKT 292
++ +G++ P +T + + L+ I + ++ ++ TP+Q AIP I++GRD++ ++T
Sbjct: 283 VEATGQNVPPNITSFDDVQLTEIIRNNVALA-RYDKPTPVQKHAIPIIINGRDLMACAQT 341
Query: 293 GSGKTVAFLLPLVRQIKAQPPLAPDETG---------PIGLILTPTRELAVQIQEEALKF 343
GSGKT AFL+P++ Q+ + P ++ P+GL+L PTRELA QI EEA KF
Sbjct: 342 GSGKTAAFLVPILNQMYELGHVPPPQSTRQYSRRKQYPLGLVLAPTRELATQIFEEAKKF 401
Query: 344 CKXXXXXXXXXXXXXELKQQINELKRGVDIIVATPGRFIDLMTLNSGHLLSPTRISFVVM 403
+Q+ EL RG +IVATPGR D++T L I F+V+
Sbjct: 402 AYRSRMRPAVLYGGNNTSEQMRELDRGCHLIVATPGRLEDMITRGKVGL---ENIRFLVL 458
Query: 404 DEADRLFDLGFGPQVNQIMGCIR----PDKQCVLFSATFPSKLKHFASRTLKNPIQITIN 459
DEADR+ D+GF PQ+ +I+ + +Q ++FSATFP +++ AS L N I + +
Sbjct: 459 DEADRMLDMGFEPQIRRIVEQLNMPPTGQRQTLMFSATFPKQIQELASDFLSNYIFLAVG 518
Query: 460 SKSLINENIQQRVQIFDEEHVKFEFLLKRLSD-RLALHRGEDEKTIIFVGSQQXXXXXXX 518
+ENI Q + ++ E K +LL LS R +D T+IFV +++
Sbjct: 519 RVGSTSENITQTI-LWVYEPDKRSYLLDLLSSIRDGPEYTKDSLTLIFVETKKGADSLEE 577
Query: 519 XXXXNGITTFPIHAGKPSAERLRNLQKFKETDNGILICTEVLSRGLNVPEVSLVIIYNAA 578
IH + ER L+ F+ D IL+ T V +RGL++P V VI ++
Sbjct: 578 FLYQCNHPVTSIHGDRTQKEREEALRCFRSGDCPILVATAVAARGLDIPHVKHVINFDLP 637
Query: 579 KTIAQYVHXXXXXXXXXXXXXALSF 603
+ +YVH A SF
Sbjct: 638 SDVEEYVHRIGRTGRMGNLGVATSF 662
>SPCC1795.11 [A] KOG0335 ATP-dependent RNA helicase
Length = 636
Score = 183 bits (465), Expect = 8e-46
Identities = 134/446 (30%), Positives = 216/446 (48%), Gaps = 35/446 (7%)
Query: 233 IKISGKDCPKPVTKWSQLGLSSEIMDLISNELQFVTLTPIQCQAIPAIMSGRDVIGISKT 292
+++SG D +PV +++ L+S ++ I + TP+Q +IP + SGRD++ ++T
Sbjct: 158 VEVSGGDI-EPVNEFTSPPLNSHLLQNIKLS-GYTQPTPVQKNSIPIVTSGRDLMACAQT 215
Query: 293 GSGKTVAFLLPLVRQIKAQPPLA------------PDETGPIGLILTPTRELAVQIQEEA 340
GSGKT FL P++ + P A P + P LIL PTREL QI EE+
Sbjct: 216 GSGKTAGFLFPILSLAFDKGPAAVPVDQDAGMGYRPRKAYPTTLILAPTRELVCQIHEES 275
Query: 341 LKFCKXXXXXXXXXXXXXELKQQINELKRGVDIIVATPGRFIDLMTLNSGHLLSPTRISF 400
KFC +++ QI ++ +G D++ ATPGR +DL+ +S I F
Sbjct: 276 RKFCYRSWVRPCAVYGGADIRAQIRQIDQGCDLLSATPGRLVDLIDRGR---ISLANIKF 332
Query: 401 VVMDEADRLFDLGFGPQVNQIMG----CIRPDKQCVLFSATFPSKLKHFASRTLKNPIQI 456
+V+DEADR+ D+GF PQ+ I+ ++Q ++FSATFP ++ A LK+ + +
Sbjct: 333 LVLDEADRMLDMGFEPQIRHIVEGADMTSVEERQTLMFSATFPRDIQLLARDFLKDYVFL 392
Query: 457 TINSKSLINENIQQRVQIFDEEHVKFEFLLKRLSDRLALHRGEDE-KTIIFVGSQQXXXX 515
++ +ENI Q+V + E+ K +LL LH E T+IFV +++
Sbjct: 393 SVGRVGSTSENITQKV-VHVEDSEKRSYLLD------ILHTLPPEGLTLIFVETKRMADT 445
Query: 516 XXXXXXXNGITTFPIHAGKPSAERLRNLQKFKETDNGILICTEVLSRGLNVPEVSLVIIY 575
+ IH + ER R L+ F+ I++ T V SRGL++P V+ VI Y
Sbjct: 446 LTDYLLNSNFPATSIHGDRTQRERERALELFRSGRTSIMVATAVASRGLDIPNVTHVINY 505
Query: 576 NAAKTIAQYVHXXXXXXXXXXXXXALSFVMVDELASAYILVKCMKENELSSVPMVVYQKL 635
+ I YVH A++F + A L++ ++E P +
Sbjct: 506 DLPTDIDDYVHRIGRTGRAGNTGQAVAFFNRNNKGIAKELIELLQEAN-QECPSFLIAMA 564
Query: 636 KEMNDEFSSGLKTGKYRLIQGFGGKG 661
+E F + G+Y G GG+G
Sbjct: 565 RE--SSFGGNGRGGRY---SGRGGRG 585
>At3g58510 [A] KOG0335 ATP-dependent RNA helicase
Length = 603
Score = 183 bits (465), Expect = 8e-46
Identities = 125/397 (31%), Positives = 193/397 (48%), Gaps = 23/397 (5%)
Query: 233 IKISGKDCPKPVTKWSQLGLSSEIMDLISNELQFVTLTPIQCQAIPAIMSGRDVIGISKT 292
++ SG D P PV ++ + L + ++L ++V TP+Q AIP +++ RD++ ++T
Sbjct: 139 VETSGGDVPPPVNTFADIDLG-DALNLNIRRCKYVRPTPVQRHAIPILLAERDLMACAQT 197
Query: 293 GSGKTVAFLLPLVRQIK----AQPPLAPDETGPIGLILTPTRELAVQIQEEALKFCKXXX 348
GSGKT AF P++ I + P P +IL+PTRELA QI +EA KF
Sbjct: 198 GSGKTAAFCFPIISGIMKDQHVERPRGSRAVYPFAVILSPTRELACQIHDEAKKFSYQTG 257
Query: 349 XXXXXXXXXXELKQQINELKRGVDIIVATPGRFIDLMTLNSGHLLSPTRISFVVMDEADR 408
+ QQ+ EL+RG DI+VATPGR DL+ +S I F+ +DEADR
Sbjct: 258 VKVVVAYGGTPIHQQLRELERGCDILVATPGRLNDLL---ERARVSMQMIRFLALDEADR 314
Query: 409 LFDLGFGPQVNQIMGCI----RPDKQCVLFSATFPSKLKHFASRTLKNPIQITINSKSLI 464
+ D+GF PQ+ +I+ + R +Q +LFSATFPS+++ A+ + N I + +
Sbjct: 315 MLDMGFEPQIRKIVEQMDMPPRGVRQTMLFSATFPSQIQRLAADFMSNYIFLAVGRVGSS 374
Query: 465 NENIQQRVQIFDEEHVKFEFLLKRLSDRLALHRGEDEKTIIFVGSQQXXXXXXXXXXXNG 524
+ I QRV+ E + L D L R +KT ++ N
Sbjct: 375 TDLITQRVEFVQESDKR-----SHLMDLLHAQRETQDKT------KRGADTLENWLCMNE 423
Query: 525 ITTFPIHAGKPSAERLRNLQKFKETDNGILICTEVLSRGLNVPEVSLVIIYNAAKTIAQY 584
IH + ER L+ FK IL+ T+V +RGL++P V+ V+ ++ I Y
Sbjct: 424 FPATSIHGDRTQQEREVALRSFKTGRTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDY 483
Query: 585 VHXXXXXXXXXXXXXALSFVMVDELASAYILVKCMKE 621
VH A +F + A L + M+E
Sbjct: 484 VHRIGRTGRAGKSGIATAFFNENNAQLARSLAELMQE 520
>At4g33370 [A] KOG0341 DEAD-box protein abstrakt
Length = 542
Score = 183 bits (464), Expect = 1e-45
Identities = 120/432 (27%), Positives = 212/432 (48%), Gaps = 23/432 (5%)
Query: 209 YREPNDLGLMSEKDVEELRLSLDNIKISGKDCPKPVTKWSQLGLSSEIMDLISNELQFVT 268
++ P + MS K ++ +R +I ++G+D P P+ + + S ++ ++ ++ +
Sbjct: 62 WKPPLHVRKMSTKQMDLIRKQW-HITVNGEDIPPPIKNFMDMKFPSPLLRMLKDK-GIMH 119
Query: 269 LTPIQCQAIPAIMSGRDVIGISKTGSGKTVAFLLPLV---RQIKAQPPLAPDETGPIGLI 325
TPIQ Q +P ++SGRD+IGI+ TGSGKT+ F+LP++ Q + P+A E GPI L+
Sbjct: 120 PTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIILALQEEIMMPIAAGE-GPIALV 178
Query: 326 LTPTRELAVQIQEEALKFCKXXXXXXXXXXXXX------ELKQQINELKRGVDIIVATPG 379
+ P+RELA Q + +F +++ Q++ +K+GV I+VATPG
Sbjct: 179 ICPSRELAKQTYDVVEQFVASLVEDGYPRLRSLLCIGGVDMRSQLDVVKKGVHIVVATPG 238
Query: 380 RFIDLMTLNSGHLLSPTRISFVVMDEADRLFDLGFGPQVNQIMGCIRPDKQCVLFSATFP 439
R D++ +S + +DEADRL DLGF + + + +Q +LFSAT P
Sbjct: 239 RLKDILAKKK---MSLDACRLLTLDEADRLVDLGFEDDIRHVFDHFKSQRQTLLFSATMP 295
Query: 440 SKLKHFASRTLKNPIQITINSKSLINENIQQRVQIFDEEHVKFEFLLKRLSDRLALHRGE 499
+K++ FA+ L P+ + + N ++ Q V+ +E K +LL+ L +
Sbjct: 296 AKIQIFATSALVKPVTVNVGRAGAANLDVIQEVEYVKQE-AKIVYLLECL-------QKT 347
Query: 500 DEKTIIFVGSQQXXXXXXXXXXXNGITTFPIHAGKPSAERLRNLQKFKETDNGILICTEV 559
+IF ++ G+ IH GK +R + FK +L+ T+V
Sbjct: 348 TPPVLIFCENKADVDDIHEYLLLKGVEAVAIHGGKDQEDRDYAISLFKAGKKDVLVATDV 407
Query: 560 LSRGLNVPEVSLVIIYNAAKTIAQYVHXXXXXXXXXXXXXALSFVMVDELASAYILVKCM 619
S+GL+ P++ VI Y+ I YVH A +F+ ++ + +K +
Sbjct: 408 ASKGLDFPDIQHVINYDMPGEIENYVHRIGRTGRCGKTGIATTFINKNQSEITLLDLKHL 467
Query: 620 KENELSSVPMVV 631
+ +P V+
Sbjct: 468 LQEAKQRIPPVL 479
>CE23832 [A] KOG0341 DEAD-box protein abstrakt
Length = 630
Score = 182 bits (463), Expect = 1e-45
Identities = 119/404 (29%), Positives = 195/404 (47%), Gaps = 20/404 (4%)
Query: 209 YREPNDLGLMSEKDVEELRLSLDNIKISGKDCPKPVTKWSQLGLSSEIMDLISNELQFVT 268
+R P + S++D E R L I G P P+ + ++ +++ + + VT
Sbjct: 154 WRPPGHIRRQSQEDYEIQRKRL-GISCEGDHIPPPIGSFLEMKFPKSLLEFMQKQKGIVT 212
Query: 269 LTPIQCQAIPAIMSGRDVIGISKTGSGKTVAFLLPLVRQIKAQPPLAP--DETGPIGLIL 326
T IQ Q IP +SGRD+IGI+ TGSGKT+ F+LPLV Q P GP GLI+
Sbjct: 213 PTAIQIQGIPVALSGRDMIGIASTGSGKTMTFVLPLVMFCLEQEMKLPFMRSEGPFGLII 272
Query: 327 TPTRELAVQIQE------EALKFCKXXXXXXXXXXXXXELKQQINELKRGVDIIVATPGR 380
P+RELA QI + +AL + +Q +++ G+ I+VATPGR
Sbjct: 273 VPSRELARQIFDLIIEMFDALGKAGLPEMRAGLCIGGVPIGEQAKDVRDGIHIVVATPGR 332
Query: 381 FIDLMTLNSGHLLSPTRISFVVMDEADRLFDLGFGPQVNQIMGCIRPDKQCVLFSATFPS 440
D++T +++ ++V+DEADR+ D+GF ++ I + +Q +LFSAT P
Sbjct: 333 LSDMLTKK---IINLEVCRYLVLDEADRMLDMGFEDEIKSIFYFFKAQRQTLLFSATMPR 389
Query: 441 KLKHFASRTLKNPIQITINSKSLINENIQQRVQIFDEEHVKFEFLLKRLSDRLALHRGED 500
K++ FA L PI + + + N+ Q + E V+ E L R+ + L +
Sbjct: 390 KIQFFAKSALVKPIVVNVGRAGAASLNVLQEL-----EFVRSENKLVRVLECL---QKTS 441
Query: 501 EKTIIFVGSQQXXXXXXXXXXXNGITTFPIHAGKPSAERLRNLQKFKETDNGILICTEVL 560
K +IF + G+ IH GK ++R ++ F++ + +L+ T+V
Sbjct: 442 PKVLIFAEKKVDVDNIYEYLLVKGVEVASIHGGKDQSDRHAGIEAFRKNEKDVLVATDVA 501
Query: 561 SRGLNVPEVSLVIIYNAAKTIAQYVHXXXXXXXXXXXXXALSFV 604
S+GL+ + VI ++ + I YVH A +F+
Sbjct: 502 SKGLDFQGIEHVINFDMPEDIENYVHRIGRTGRSGRKGLATTFI 545
>7296891 [A] KOG0341 DEAD-box protein abstrakt
Length = 619
Score = 182 bits (461), Expect = 2e-45
Identities = 122/389 (31%), Positives = 194/389 (49%), Gaps = 21/389 (5%)
Query: 206 KCLYREPNDLGLMSEKDVEELRLSLDNIKISGKDCPKPVTKWSQLGLSSEIMDLISNELQ 265
K ++ P + MSE++ E +R L I + G+ P+ + ++ I++ ++ +
Sbjct: 139 KTAWKPPRYIREMSEEEREAVRHEL-RILVEGETPSPPIRSFREMKFPKGILNGLAAK-G 196
Query: 266 FVTLTPIQCQAIPAIMSGRDVIGISKTGSGKTVAFLLPLVRQIKAQPPLAPDET--GPIG 323
TPIQ Q +P +++GRD+IGI+ TGSGKT+ F+LP++ Q P E GP G
Sbjct: 197 IKNPTPIQVQGLPTVLAGRDLIGIAFTGSGKTLVFVLPVIMFALEQEYSLPFERNEGPYG 256
Query: 324 LILTPTRELAVQIQE------EALKFCKXXXXXXXXXXXXXELKQQINELKRGVDIIVAT 377
LI+ P+RELA Q E + L+ C + + ++ + RGV I+VAT
Sbjct: 257 LIICPSRELAKQTHEIIQHYSKHLQACGMPEIRSCLAMGGLPVSEALDVISRGVHIVVAT 316
Query: 378 PGRFIDLMTLNSGHLLSPTRISFVVMDEADRLFDLGFGPQVNQIMGCIRPDKQCVLFSAT 437
PGR +D++ +L+ ++ MDEADR+ D+GF V I + +Q +LFSAT
Sbjct: 317 PGRLMDMLDKK---ILTLDMCRYLCMDEADRMIDMGFEEDVRTIFSFFKGQRQTLLFSAT 373
Query: 438 FPSKLKHFASRTLKNPIQITINSKSLINENIQQRVQIFDEEHVKFEFLLKRLSDRLALHR 497
P K+++FA L P+ I + + N+ Q+V E+VK E + L D L +
Sbjct: 374 MPKKIQNFARSALVKPVTINVGRAGAASMNVTQQV-----EYVKQEAKVVYLLDCL---Q 425
Query: 498 GEDEKTIIFVGSQQXXXXXXXXXXXNGITTFPIHAGKPSAERLRNLQKFKETDNGILICT 557
+IF +Q G+ IH GK ER R + ++ +L+ T
Sbjct: 426 KTAPPVLIFAEKKQDVDCIHEYLLLKGVEAVAIHGGKDQEERSRAVDAYRVGKKDVLVAT 485
Query: 558 EVLSRGLNVPEVSLVIIYNAAKTIAQYVH 586
+V S+GL+ P V VI Y+ I YVH
Sbjct: 486 DVASKGLDFPNVQHVINYDMPDDIENYVH 514
>CE22474 [A] KOG0336 ATP-dependent RNA helicase
Length = 504
Score = 181 bits (460), Expect = 3e-45
Identities = 132/430 (30%), Positives = 220/430 (50%), Gaps = 22/430 (5%)
Query: 208 LYREPNDLGLMSEKDVEELRLSLDNIKI------SGKDCPKPVTKWSQ-LGLSSEIMDLI 260
LY+ PN+ +S + ++EL + +K+ S P PV + Q G ++ IM I
Sbjct: 40 LYKIPNEQKNLSPEQLQELYTNGGVMKVYPFREESTVKIPPPVNSFEQAFGSNASIMGEI 99
Query: 261 SNELQFVTLTPIQCQAIPAIMSGRDVIGISKTGSGKTVAFLLPLVRQIKAQPPLAPDETG 320
F +PIQ Q P ++SG+D IG+S+TGSGKT+AFLLP + I AQ LA E
Sbjct: 100 RKN-GFEKPSPIQSQMWPLLLSGQDCIGVSQTGSGKTLAFLLPALLHIDAQ--LAQYEKN 156
Query: 321 -------PIGLILTPTRELAVQIQEEALKFCKXXXXXXXXXXXXXELKQQINELKRGVDI 373
P L+L+PTRELA QI+ E K+ +Q+ + GV+I
Sbjct: 157 DEEQKPSPFVLVLSPTRELAQQIEGEVKKYSYNGYKSVCLYGGGSR-PEQVEACRGGVEI 215
Query: 374 IVATPGRFIDLMTLNSGHLLSPTRISFVVMDEADRLFDLGFGPQVNQIMGCIRPDKQCVL 433
++ATPGR DL N G ++S +++VV+DEADR+ D+GF + +I+ IRPD+ L
Sbjct: 216 VIATPGRLTDLS--NDG-VISLASVTYVVLDEADRMLDMGFEVAIRRILFEIRPDRLVAL 272
Query: 434 FSATFPSKLKHFASRTLKNPIQITINSKSLINENIQQRVQIFDEEHVKFEFLLKRLSDRL 493
SAT+P ++ + K + S L + + F +F + + ++
Sbjct: 273 TSATWPEGVRKLTDKYTKEAVMAVNGSLDLTSCKSVTQFFEFVPHDSRFLRVCEIVNFLT 332
Query: 494 ALHRGEDEKTIIFVGSQQXXXXXXXXXXXNGITTFPIHAGKPSAERLRNLQKFKETDNGI 553
A H G++ K IIFV S+ GI + +H G+ ++R +L + + I
Sbjct: 333 AAH-GQNYKMIIFVKSKVMADHLSSDFCMKGINSQGLHGGRSQSDREMSLNMLRSGEVQI 391
Query: 554 LICTEVLSRGLNVPEVSLVIIYNAAKTIAQYVHXXXXXXXXXXXXXALSFVMVDELASAY 613
L+ T++ SRG++VP+++ V+ Y+ I +YVH A+SF+ ++ ++
Sbjct: 392 LVATDLASRGIDVPDITHVLNYDFPMDIEEYVHRVGRTGRAGRKGEAMSFLWWNDRSNFE 451
Query: 614 ILVKCMKENE 623
L++ ++++E
Sbjct: 452 GLIQILEKSE 461
>At5g14610 [A] KOG0331 ATP-dependent RNA helicase
Length = 713
Score = 181 bits (460), Expect = 3e-45
Identities = 118/372 (31%), Positives = 193/372 (51%), Gaps = 24/372 (6%)
Query: 266 FVTLTPIQCQAIPAIMSGRDVIGISKTGSGKTVAFLLPLVRQIKAQPPLAPDETGPIGLI 325
F +PIQ Q+ P M RD++ I+KTGSGKT+ +L+P + Q GP L+
Sbjct: 249 FSAPSPIQAQSWPIAMQNRDIVAIAKTGSGKTLGYLIPGFMHL--QRIHNDSRMGPTILV 306
Query: 326 LTPTRELAVQIQEEALKFCKXXXXXXXXXXXXXELKQQINELKRGVDIIVATPGRFIDLM 385
L+PTRELA QIQ EALKF K Q+ E++RGVDI+VATPGR D++
Sbjct: 307 LSPTRELATQIQVEALKFGKSSKISCACLYGGAPKGPQLKEIERGVDIVVATPGRLNDIL 366
Query: 386 TLNSGHLLSPTRISFVVMDEADRLFDLGFGPQVNQIMGCIRPDKQCVLFSATFPSKLKHF 445
+ +S ++S++V+DEADR+ D+GF PQ+ +I+ + +Q ++++AT+P +++
Sbjct: 367 EMKR---ISLHQVSYLVLDEADRMLDMGFEPQIRKIVNEVPTKRQTLMYTATWPKEVRKI 423
Query: 446 ASRTLKNPIQITINS--KSLINENIQQRVQIFD--EEHVKFEFLLKRLSDRLALHRGEDE 501
A+ L NP Q+ I + + + N++I Q +++ E+H + E +L+ +
Sbjct: 424 AADLLVNPAQVNIGNVDELVANKSITQTIEVLAPMEKHSRLEQILR--------SQEPGS 475
Query: 502 KTIIFVGSQQXXXXXXXXXXXNGITTF---PIHAGKPSAERLRNLQKFKETDNGILICTE 558
K IIF +++ N TF IH K AER L +F+ +L+ T+
Sbjct: 476 KIIIFCSTKR----MCDQLARNLTRTFGAAAIHGDKSQAERDDVLNQFRSGRTPVLVATD 531
Query: 559 VLSRGLNVPEVSLVIIYNAAKTIAQYVHXXXXXXXXXXXXXALSFVMVDELASAYILVKC 618
V +RGL+V ++ +V+ Y+ + YVH A +F + A L+K
Sbjct: 532 VAARGLDVKDIRVVVNYDFPNGVEDYVHRIGRTGRAGATGLAYTFFGDQDAKHASDLIKI 591
Query: 619 MKENELSSVPMV 630
++ P V
Sbjct: 592 LEGANQKVPPQV 603
>CE28369 [A] KOG0335 ATP-dependent RNA helicase
Length = 644
Score = 180 bits (457), Expect = 7e-45
Identities = 120/371 (32%), Positives = 189/371 (50%), Gaps = 30/371 (8%)
Query: 233 IKISGKDCPKPVTKWSQLGLSSEIMDLISNELQFVTLTPIQCQAIPAIMSGRDVIGISKT 292
+++SG P + +++ G +M+ + N + TP+Q +IP +++ RD++ ++T
Sbjct: 111 VEVSGDSVPAAIEHFNEAGFGPAVMENV-NRSGYSKPTPVQKHSIPTLLANRDLMSCAQT 169
Query: 293 GSGKTVAFLLPLVRQIKAQPP---LAPDETG------PIGLILTPTRELAVQIQEEALKF 343
GSGKT AFLLP+++ I A P P T P L+L+PTRELA+QI +EA KF
Sbjct: 170 GSGKTAAFLLPIIQHILAGGPDMVKPPAFTNGRRTYYPCALVLSPTRELAIQIHKEATKF 229
Query: 344 C-KXXXXXXXXXXXXXELKQQINELKRGVDIIVATPGRFIDLMTLNSGHLLSPTRISFVV 402
K + Q+N L+ G I++ATPGR ID++ + ++V
Sbjct: 230 SYKSNIQTAILYGGRENYRDQVNRLRAGTHILIATPGRLIDIIEQG---FIGLAGCRYLV 286
Query: 403 MDEADRLFDLGFGPQVNQIMGCIRPDKQC---VLFSATFPSKLKHFASRTLK-NPIQITI 458
+DEADR+ D+GF PQ+ +I+G P K +FSATFP +++ A LK N I + +
Sbjct: 287 LDEADRMLDMGFEPQIRKIVGQGMPPKTARTTAMFSATFPKEIQVLAKDFLKDNYIFLAV 346
Query: 459 NSKSLINENIQQRVQIFDEEHVK---FEFLLKRLSDRLALHRGEDEKTIIFVGSQQXXXX 515
+ENI+QR+ +E + E L+ S+ L L +FV +++
Sbjct: 347 GRVGSTSENIEQRLLWVNEMEKRSNLMEILMNEHSENLVL---------VFVETKRGANE 397
Query: 516 XXXXXXXNGITTFPIHAGKPSAERLRNLQKFKETDNGILICTEVLSRGLNVPEVSLVIIY 575
I + IH ER RNL+ F+ IL+ T V +RGL++P V VI Y
Sbjct: 398 LAYFLNRQQIRSVSIHGDLKQIERERNLELFRSGQCPILVATAVAARGLDIPNVRHVINY 457
Query: 576 NAAKTIAQYVH 586
+ +YVH
Sbjct: 458 DLPGDSDEYVH 468
>CE24451 [A] KOG0335 ATP-dependent RNA helicase
Length = 641
Score = 180 bits (457), Expect = 7e-45
Identities = 120/371 (32%), Positives = 189/371 (50%), Gaps = 30/371 (8%)
Query: 233 IKISGKDCPKPVTKWSQLGLSSEIMDLISNELQFVTLTPIQCQAIPAIMSGRDVIGISKT 292
+++SG P + +++ G +M+ + N + TP+Q +IP +++ RD++ ++T
Sbjct: 108 VEVSGDSVPAAIEHFNEAGFGPAVMENV-NRSGYSKPTPVQKHSIPTLLANRDLMSCAQT 166
Query: 293 GSGKTVAFLLPLVRQIKAQPP---LAPDETG------PIGLILTPTRELAVQIQEEALKF 343
GSGKT AFLLP+++ I A P P T P L+L+PTRELA+QI +EA KF
Sbjct: 167 GSGKTAAFLLPIIQHILAGGPDMVKPPAFTNGRRTYYPCALVLSPTRELAIQIHKEATKF 226
Query: 344 C-KXXXXXXXXXXXXXELKQQINELKRGVDIIVATPGRFIDLMTLNSGHLLSPTRISFVV 402
K + Q+N L+ G I++ATPGR ID++ + ++V
Sbjct: 227 SYKSNIQTAILYGGRENYRDQVNRLRAGTHILIATPGRLIDIIEQG---FIGLAGCRYLV 283
Query: 403 MDEADRLFDLGFGPQVNQIMGCIRPDKQC---VLFSATFPSKLKHFASRTLK-NPIQITI 458
+DEADR+ D+GF PQ+ +I+G P K +FSATFP +++ A LK N I + +
Sbjct: 284 LDEADRMLDMGFEPQIRKIVGQGMPPKTARTTAMFSATFPKEIQVLAKDFLKDNYIFLAV 343
Query: 459 NSKSLINENIQQRVQIFDEEHVK---FEFLLKRLSDRLALHRGEDEKTIIFVGSQQXXXX 515
+ENI+QR+ +E + E L+ S+ L L +FV +++
Sbjct: 344 GRVGSTSENIEQRLLWVNEMEKRSNLMEILMNEHSENLVL---------VFVETKRGANE 394
Query: 516 XXXXXXXNGITTFPIHAGKPSAERLRNLQKFKETDNGILICTEVLSRGLNVPEVSLVIIY 575
I + IH ER RNL+ F+ IL+ T V +RGL++P V VI Y
Sbjct: 395 LAYFLNRQQIRSVSIHGDLKQIERERNLELFRSGQCPILVATAVAARGLDIPNVRHVINY 454
Query: 576 NAAKTIAQYVH 586
+ +YVH
Sbjct: 455 DLPGDSDEYVH 465
>Hs21071032 [A] KOG0341 DEAD-box protein abstrakt
Length = 622
Score = 179 bits (454), Expect = 2e-44
Identities = 120/407 (29%), Positives = 193/407 (46%), Gaps = 21/407 (5%)
Query: 206 KCLYREPNDLGLMSEKDVEELRLSLDNIKISGKDCPKPVTKWSQLGLSSEIMDLISNELQ 265
K + P + MSE+ E +R +I + G P P+ + ++ + I+ + +
Sbjct: 143 KTSWTPPRYVLSMSEERHERVRKKY-HILVEGDGIPPPIKSFKEMKFPAAILRGLKKK-G 200
Query: 266 FVTLTPIQCQAIPAIMSGRDVIGISKTGSGKTVAFLLPLVRQIKAQPPLAP--DETGPIG 323
TPIQ Q IP I+SGRD+IGI+ TGSGKT+ F LP++ Q P GP G
Sbjct: 201 IHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIMFCLEQEKRLPFSKREGPYG 260
Query: 324 LILTPTRELAVQIQEEALKFCKXXXXXXXXXXXXX------ELKQQINELKRGVDIIVAT 377
LI+ P+RELA Q +C+ +K+Q+ ++ GV ++VAT
Sbjct: 261 LIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIGGMSVKEQMETIRHGVHMMVAT 320
Query: 378 PGRFIDLMTLNSGHLLSPTRISFVVMDEADRLFDLGFGPQVNQIMGCIRPDKQCVLFSAT 437
PGR +DL+ ++S ++ +DEADR+ D+GF + I + +Q +LFSAT
Sbjct: 321 PGRLMDLLQKK---MVSLDICRYLALDEADRMIDMGFEGDIRTIFSYFKGQRQTLLFSAT 377
Query: 438 FPSKLKHFASRTLKNPIQITINSKSLINENIQQRVQIFDEEHVKFEFLLKRLSDRLALHR 497
P K+++FA L P+ I + + ++ Q V+ EE K +LL+ L +
Sbjct: 378 MPKKIQNFAKSALVKPVTINVGRAGAASLDVIQEVEYVKEE-AKMVYLLECL-------Q 429
Query: 498 GEDEKTIIFVGSQQXXXXXXXXXXXNGITTFPIHAGKPSAERLRNLQKFKETDNGILICT 557
+IF + G+ IH GK ER + ++ F+E +L+ T
Sbjct: 430 KTPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKKDVLVAT 489
Query: 558 EVLSRGLNVPEVSLVIIYNAAKTIAQYVHXXXXXXXXXXXXXALSFV 604
+V S+GL+ P + VI Y+ + I YVH A +F+
Sbjct: 490 DVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFI 536
>YLL008w [A] KOG0338 ATP-dependent RNA helicase
Length = 752
Score = 178 bits (451), Expect = 3e-44
Identities = 114/388 (29%), Positives = 201/388 (51%), Gaps = 12/388 (3%)
Query: 220 EKDVEELRLSLDNIKISGKDCPKPVTK-WSQLGLSSEIMDLISNELQFVTLTPIQCQAIP 278
E D EE + + G + K + + ++ L LS ++ +++ L +V +PIQ IP
Sbjct: 205 EDDSEEAKADFYAPETEGDEAKKQMYENFNSLSLSRPVLKGLAS-LGYVKPSPIQSATIP 263
Query: 279 AIMSGRDVIGISKTGSGKTVAFLLPLVRQIKAQPPLAPDETGPIGLILTPTRELAVQIQE 338
+ G+D+I + TGSGKT AF++P++ ++ +P ++L PTRELA+Q+ +
Sbjct: 264 IALLGKDIIAGAVTGSGKTAAFMIPIIERLLYKPAKIASTRV---IVLLPTRELAIQVAD 320
Query: 339 EALKFCKXXXXXXXXXXXXX-ELKQQINELKRGVDIIVATPGRFIDLMTLNSGHLLSPTR 397
+ + L+QQ LK DI++ATPGRFID + + +
Sbjct: 321 VGKQIARFVSGITFGLAVGGLNLRQQEQMLKSRPDIVIATPGRFID--HIRNSASFNVDS 378
Query: 398 ISFVVMDEADRLFDLGFGPQVNQIMGCIRPDKQCVLFSATFPSKLKHFASRTLKNPIQIT 457
+ +VMDEADR+ + GF ++N+IMG + ++Q +LFSAT SK+K S +LK P++I
Sbjct: 379 VEILVMDEADRMLEEGFQDELNEIMGLLPSNRQNLLFSATMNSKIKSLVSLSLKKPVRIM 438
Query: 458 IN-SKSLINENIQQRVQIFDEEHVKFEFLLKRLSDRLALHRGEDEKTIIFVGSQQXXXXX 516
I+ K + Q+ V+I +H+K L + L ++ ++FV ++
Sbjct: 439 IDPPKKAATKLTQEFVRIRKRDHLKPALLFNLIR---KLDPTGQKRIVVFVARKETAHRL 495
Query: 517 XXXXXXNGITTFPIHAGKPSAERLRNLQKFKETDNGILICTEVLSRGLNVPEVSLVIIYN 576
G++ +H +RL ++ KFK + +LICT++ SRGL++P++ +VI Y+
Sbjct: 496 RIIMGLLGMSVGELHGSLTQEQRLDSVNKFKNLEVPVLICTDLASRGLDIPKIEVVINYD 555
Query: 577 AAKTIAQYVHXXXXXXXXXXXXXALSFV 604
K+ Y+H +++FV
Sbjct: 556 MPKSYEIYLHRVGRTARAGREGRSVTFV 583
>7298204 [A] KOG0335 ATP-dependent RNA helicase
Length = 661
Score = 177 bits (448), Expect = 8e-44
Identities = 116/373 (31%), Positives = 191/373 (51%), Gaps = 15/373 (4%)
Query: 233 IKISGKDCPKPVTKWSQLGLSSEIMDLISNELQFVTLTPIQCQAIPAIMSGRDVIGISKT 292
+K++G D P+P+ ++ L I+D + N+ + TPIQ +IP I SGRD++ ++T
Sbjct: 233 VKVTGSDVPQPIQHFTSADLRDIIIDNV-NKSGYKIPTPIQKCSIPVISSGRDLMACAQT 291
Query: 293 GSGKTVAFLLPLVRQIKAQPPLAPDETGPIGLILTPTRELAVQIQEEALKFCKXXXXXXX 352
GSGKT AFLLP++ ++ + P + P +I++PTRELA+QI EA KF
Sbjct: 292 GSGKTAAFLLPILSKL-LEDPHELELGRPQVVIVSPTRELAIQIFNEARKFAFESYLKIG 350
Query: 353 XXXXXXELKQQINELKRGVDIIVATPGRFIDLMTLNSGHLLSPTRISFVVMDEADRLFDL 412
+ Q + RG +++ATPGR +D + ++ FVV+DEADR+ D+
Sbjct: 351 IVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDRT---FITFEDTRFVVLDEADRMLDM 407
Query: 413 GFGPQVNQIMG--CIRPDKQCVLFSATFPSKLKHFASRTLKNPIQITINSKSLINENIQQ 470
GF + +IM +RP+ Q ++FSATFP +++ A LKN + + I +++Q
Sbjct: 408 GFSEDMRRIMTHVTMRPEHQTLMFSATFPEEIQRMAGEFLKNYVFVAIGIVGGACSDVKQ 467
Query: 471 RVQIFDEEHVKFEFLLKRLSDRLALHRGEDEKTIIFVGSQQXXXXXXXXXXXNGITTFPI 530
+ + ++ K L++ LS+ + + TI+FV +++ T I
Sbjct: 468 TIYEVN-KYAKRSKLIEILSE-------QADGTIVFVETKRGADFLASFLSEKEFPTTSI 519
Query: 531 HAGKPSAERLRNLQKFKETDNGILICTEVLSRGLNVPEVSLVIIYNAAKTIAQYVHXXXX 590
H + ++R + L+ FK +LI T V SRGL++ + VI Y+ I YVH
Sbjct: 520 HGDRLQSQREQALRDFKNGSMKVLIATSVASRGLDIKNIKHVINYDMPSKIDDYVHRIGR 579
Query: 591 XXXXXXXXXALSF 603
A SF
Sbjct: 580 TGRVGNNGRATSF 592
>SPBC17D1.06 [A] KOG0331 ATP-dependent RNA helicase
Length = 578
Score = 173 bits (439), Expect = 8e-43
Identities = 119/386 (30%), Positives = 197/386 (50%), Gaps = 20/386 (5%)
Query: 243 PVTKWSQLGLSSEIMDLISNELQFVTLTPIQCQAIPAIMSGRDVIGISKTGSGKTVAFLL 302
P+ ++ +L +S+++ + + N + TPIQ P +++GRDV+GI++TGSGKTVAF +
Sbjct: 165 PILQFDELDVSAKLREGLKN---YKEPTPIQAATWPYLLAGRDVVGIAETGSGKTVAFGI 221
Query: 303 PLVRQIKAQPPLAPDETGPIGLILTPTRELAVQIQEEALKFCKXXXXXXXXXXXXXELKQ 362
P ++ + L+ +++ P L+++PTRELA+Q E + +
Sbjct: 222 PALQYLNG---LSDNKSVPRVLVVSPTRELAIQTYENLNSLIQGTNLKAVVVYGGAPKSE 278
Query: 363 QINELKRGVDIIVATPGRFIDLMTLNSGHLLSPTRISFVVMDEADRLFDLGFGPQVNQIM 422
Q K +I+ TPGR +DL +N G + +++ ++V+DEADR+ D GF + I+
Sbjct: 279 QARAAK-NASVIIGTPGRLLDL--INDGS-IDCSQVGYLVLDEADRMLDTGFEQDIRNII 334
Query: 423 GCIRPD------KQCVLFSATFPSKLKHFASRTLKNPIQITINSKSL-INENIQQRVQIF 475
PD +Q V FSAT+P ++ A+ LK+P++ITI S L ++NI Q V+I
Sbjct: 335 S-HTPDPTRNGSRQTVFFSATWPESVRALAATFLKDPVKITIGSDELAASQNITQIVEIL 393
Query: 476 DEEHVKFEFLLKRLSDRLALHRGEDEKTIIFVGSQQXXXXXXXXXXXNGITTFPIHAGKP 535
D+ K E +L L + G+D+K +IFV + IH
Sbjct: 394 DDPRSK-ERMLDNLLRKHLSSGGKDDKILIFV-LYKKEAARVEGTLARKYNVVGIHGDMS 451
Query: 536 SAERLRNLQKFKETDNGILICTEVLSRGLNVPEVSLVIIYNAAKTIAQYVHXXXXXXXXX 595
RL+ L FK +L+ T+V +RGL++P+V LVI TI YVH
Sbjct: 452 QGARLQALNDFKSGKCPVLVATDVAARGLDIPKVQLVINVTFPLTIEDYVHRIGRTGRAN 511
Query: 596 XXXXALSFVMVDELASAYILVKCMKE 621
A++F + + A LV +++
Sbjct: 512 TKGTAITFFTPQDKSHAGELVNVLRQ 537
>YDR243c [A] KOG0333 U5 snRNP-like RNA helicase subunit
Length = 588
Score = 172 bits (437), Expect = 1e-42
Identities = 127/411 (30%), Positives = 199/411 (47%), Gaps = 31/411 (7%)
Query: 218 MSEKDVEELRLSLDNIKISGKDCPKPVTKWSQLGL-SSEIMDLISNELQFVTLTPIQCQA 276
M+E+D L+ I G P+ W +L + +++ +I EL+F + TPIQ
Sbjct: 146 MNERDWRILKEDYA-IVTKGGTVENPLRNWEELNIIPRDLLRVIIQELRFPSPTPIQRIT 204
Query: 277 IPAIMSG---RDVIGISKTGSGKTVAFLLPLVRQIKAQPPLAPDET---GPIGLILTPTR 330
IP + + RD +G++ TGSGKT+AF++P++ ++ PP P GP LIL PTR
Sbjct: 205 IPNVCNMKQYRDFLGVASTGSGKTLAFVIPILIKMSRSPPRPPSLKIIDGPKALILAPTR 264
Query: 331 ELAVQIQEEALKFCKXXXXXXX------XXXXXXELKQQINELKRGVDIIVATPGRFIDL 384
EL QIQ+E K K L++ L G DI+VATPGR ID
Sbjct: 265 ELVQQIQKETQKVTKIWSKESNYDCKVISIVGGHSLEEISFSLSEGCDILVATPGRLIDS 324
Query: 385 MTLNSGHLLSPTRISFVVMDEADRLFDLGFGPQVNQIMGCI------RPDKQCVLFSATF 438
+ HLL ++ +V+DEAD++ DLGF QV I+ + ++Q ++F+AT
Sbjct: 325 L---ENHLLVMKQVETLVLDEADKMIDLGFEDQVTNILTKVDINADSAVNRQTLMFTATM 381
Query: 439 PSKLKHFASRTLKNPIQITINSKSLINENIQQRVQIFDEEHVKFEFLLKRLSDRLALHRG 498
++ A+ ++ P+ TI ++ IQQ V+ D + KF K+L +A +
Sbjct: 382 TPVIEKIAAGYMQKPVYATIGVETGSEPLIQQVVEYADNDEDKF----KKLKPIVAKY-- 435
Query: 499 EDEKTIIFVGSQQXXX-XXXXXXXXNGITTFPIHAGKPSAERLRNLQKFKETDNGILICT 557
D IIF+ +Q + +H K +R +LQ F+ I+I T
Sbjct: 436 -DPPIIIFINYKQTADWLAEKFQKETNMKVTILHGSKSQEQREHSLQLFRTNKVQIMIAT 494
Query: 558 EVLSRGLNVPEVSLVIIYNAAKTIAQYVHXXXXXXXXXXXXXALSFVMVDE 608
V +RGL++P VSLV+ + +K + Y+H A+SFV E
Sbjct: 495 NVAARGLDIPNVSLVVNFQISKKMDDYIHRIGRTGRAANEGTAVSFVSAAE 545
>At1g31970 [A] KOG0331 ATP-dependent RNA helicase
Length = 537
Score = 171 bits (434), Expect = 3e-42
Identities = 120/396 (30%), Positives = 195/396 (48%), Gaps = 29/396 (7%)
Query: 210 REPNDLGLMSEKDVEELRLSLDN----------IKISGKDCPKP----VTKWSQLGLSSE 255
RE + +KDV E +L ++ + ++GK + + +++ L
Sbjct: 67 REEKESEKNKKKDVPEKKLEAEDLGEGESEQQKVVVTGKGVEEAKYAALKTFAESNLPEN 126
Query: 256 IMDLISNELQFVTLTPIQCQAIPAIMSGRDVIGISKTGSGKTVAFLLPLVRQIKAQPPL- 314
++D F +PIQ P ++ GRD+IGI+KTGSGKT+AF +P + + +
Sbjct: 127 VLDCCKT---FEKPSPIQSHTWPFLLDGRDLIGIAKTGSGKTLAFGIPAIMHVLKKNKKI 183
Query: 315 --APDETGPIGLILTPTRELAVQIQEEALKFCKXXXXXXXXXXXXXELKQQINELKRGVD 372
+ P L+L+PTRELAVQI + + + QI+ ++ GVD
Sbjct: 184 GGGSKKVNPTCLVLSPTRELAVQISDVLREAGEPCGLKSICVYGGSSKGPQISAIRSGVD 243
Query: 373 IIVATPGRFIDLMTLNSGHLLSPTRISFVVMDEADRLFDLGFGPQVNQIMGCIRPDKQCV 432
I++ TPGR DL+ N +L + +SFVV+DEADR+ D+GF V I+ +Q V
Sbjct: 244 IVIGTPGRLRDLIESN---VLRLSDVSFVVLDEADRMLDMGFEEPVRFILSNTNKVRQMV 300
Query: 433 LFSATFPSKLKHFASRTLK-NPIQITINSKSLI-NENIQQRVQIFDEEHVKFEFLLKRLS 490
+FSAT+P + A + NPI++ I S L N ++ Q +++ DE + + L+ L
Sbjct: 301 MFSATWPLDVHKLAQEFMDPNPIKVIIGSVDLAANHDVMQIIEVLDER-ARDQRLIALLE 359
Query: 491 DRLALHRGEDEKTIIFVGSQQXXXXXXXXXXXNGITTFPIHAGKPSAERLRNLQKFKETD 550
H+ + + ++F + G IH K +ER R+L FKE
Sbjct: 360 K---YHKSQKNRVLVFALYKVEAERLERFLQQRGWKAVSIHGNKAQSERTRSLSLFKEGS 416
Query: 551 NGILICTEVLSRGLNVPEVSLVIIYNAAKTIAQYVH 586
+L+ T+V +RGL++P+V +VI Y T YVH
Sbjct: 417 CPLLVATDVAARGLDIPDVEVVINYTFPLTTEDYVH 452
>YGL171w [A] KOG0344 ATP-dependent RNA helicase
Length = 564
Score = 169 bits (429), Expect = 1e-41
Identities = 129/430 (30%), Positives = 208/430 (48%), Gaps = 31/430 (7%)
Query: 235 ISGKDCPKPVTKWSQLGLSSEIMD--LISNELQ--FVTLTPIQCQAIPAIMSGRDVIGIS 290
+SG D P P+ + L +S D L++N ++ F TPIQC+ IP ++ RDV+
Sbjct: 108 VSGIDIPLPIGSFEDL-ISRFSFDKRLLNNLIENGFTEPTPIQCECIPVALNNRDVLACG 166
Query: 291 KTGSGKTVAFLLPLVRQIKAQPPLAPDETGPIGLILTPTRELAVQIQEEALKFC------ 344
TGSGKT+AFL+PLV+QI A G GLI++PT+ELA QI E K
Sbjct: 167 PTGSGKTLAFLIPLVQQIIDDKQTA----GLKGLIISPTKELANQIFIECFKLSYKIFLE 222
Query: 345 --KXXXXXXXXXXXXXELKQQINELKRGVDIIVATPGRFIDLMTLNSGHLLSPTRISFVV 402
+ +LK ++ K+ DII++TP R ID++ L +++ ++
Sbjct: 223 KKRPLQVALLSKSLGAKLKNKVVSDKK-YDIIISTPLRLIDVV---KNEALDLSKVKHLI 278
Query: 403 MDEADRLFDLGFGPQVNQIM-GCIRPDKQCVLFSATFPSKLKHFASRTLKNPIQITINSK 461
DEAD+LFD F Q + I+ C P + +FSAT PS ++ A + +P+++ I K
Sbjct: 279 FDEADKLFDKTFVEQSDDILSACREPSLRKAMFSATIPSNVEEIAQSIMMDPVRVIIGHK 338
Query: 462 SLINENIQQRVQIFDEEHVKFEFLLKRLSDRLALHRGE-DEKTIIFVGSQQXXXXXXXXX 520
N NI+Q++ E K ++ R + GE IIF+ S
Sbjct: 339 EAANTNIEQKLIFCGNEEGKL------IAIRQLVQEGEFKPPIIIFLESITRAKALYHEL 392
Query: 521 XXNGITTFPIHAGKPSAERLRNLQKFKETDNGILICTEVLSRGLNVPEVSLVIIYNAAKT 580
+ I IHA + + +R R +++FK + LICT+VL+RG++ V+LVI Y+ +
Sbjct: 393 MYDRINVDVIHAERTALQRDRIIERFKTGELWCLICTDVLARGIDFKGVNLVINYDVPGS 452
Query: 581 IAQYVHXXXXXXXXXXXXXALSFVMVDELASAYILVKCMKENELSSVPMVVYQKLKEMND 640
YVH A++F + + ++ MK++ + K+ +M
Sbjct: 453 SQAYVHRIGRTGRGGRSGKAITFYTKQDSVAIKPIINVMKQSGCEVSEWM--DKMAKMTR 510
Query: 641 EFSSGLKTGK 650
+ +K GK
Sbjct: 511 KEKESIKNGK 520
>SPAC823.08c [A] KOG0330 ATP-dependent RNA helicase
Length = 465
Score = 167 bits (422), Expect = 8e-41
Identities = 115/382 (30%), Positives = 186/382 (48%), Gaps = 24/382 (6%)
Query: 205 NKCLYREPNDLGLMSEKDVEELRLSLDNIKISGKDCPKPVTKWSQLGLSSEIMDLISNEL 264
N L ++ SEK E +N + PK + +LG+ E+ + +L
Sbjct: 14 NSSLNKKIETSNSSSEKSSEN-----NNGDSQNNEAPKT---FKELGVIDELCEACE-KL 64
Query: 265 QFVTLTPIQCQAIPAIMSGRDVIGISKTGSGKTVAFLLPLVRQIKAQPPLAPDETGPIGL 324
F T TPIQ +AIP +++ RDVIG+++TGSGKT AF LP+++++ P + +
Sbjct: 65 GFKTPTPIQQEAIPVVLNKRDVIGLAQTGSGKTAAFALPVIQELWNNP------SPFFAV 118
Query: 325 ILTPTRELAVQIQEEALKFCKXXXXXXXXXXXXXELKQQINELKRGVDIIVATPGRFIDL 384
+L PTRELA QI E+ ++ Q L + ++V TPGR +D
Sbjct: 119 VLAPTRELAYQISEQFEAIGGSIGVRSVVIVGGMDMVTQAVALSKKPHVLVCTPGRLMDH 178
Query: 385 MTLNSGHLLSPTRISFVVMDEADRLFDLGFGPQVNQIMGCIRPDKQCVLFSATFPSKLKH 444
+ G L + +++MDEADRL D+ FGP +++I+ I +++ +LFSAT SK++
Sbjct: 179 LENTKGFSLK--NLKYLIMDEADRLLDMDFGPIIDKILKIIPHERRTLLFSATMTSKVEK 236
Query: 445 FASRTLKNPIQITINSKSLINENIQQRVQIFDEEHVKFEFLLKRLSDRLALHRGEDEKTI 504
+L P+++ ++SK + + QR F +H + L L + LA I
Sbjct: 237 LQRASLHQPVRVAVSSKFSTVDTLIQRYLFFPFKHK--DTYLVYLVNELA-----GNSII 289
Query: 505 IFVGSQQXXXXXXXXXXXNGITTFPIHAGKPSAERLRNLQKFKETDNGILICTEVLSRGL 564
IF + G + P+H + RL L KFK L+ T+V +RGL
Sbjct: 290 IFARTVNDTQRLAILLRTLGFSAIPLHGQLSQSNRLGALNKFKSGARSTLVATDVAARGL 349
Query: 565 NVPEVSLVIIYNAAKTIAQYVH 586
++P V +VI Y+ Y+H
Sbjct: 350 DIPLVDVVINYDIPTDSKAYIH 371
>Hs9507237 [A] KOG0335 ATP-dependent RNA helicase
Length = 724
Score = 167 bits (422), Expect = 8e-41
Identities = 110/381 (28%), Positives = 193/381 (49%), Gaps = 23/381 (6%)
Query: 233 IKISGKDCPKPVTKWSQLGLSSEIMDLISNELQFVTLTPIQCQAIPAIMSGRDVIGISKT 292
+++SG D P + + + L + + I+ + + LTP+Q +IP I++GRD++ ++T
Sbjct: 276 VEVSGHDAPPAILTFEEANLCQTLNNNIA-KAGYTKLTPVQKYSIPIILAGRDLMACAQT 334
Query: 293 GSGKTVAFLLPLVRQIKAQPPLAP---DETGPIGLILTPTRELAVQIQEEALKFCKXXXX 349
GSGKT AFLLP++ + A + P +I+ PTREL QI EA KF
Sbjct: 335 GSGKTAAFLLPILAHMMHDGITASRFKELQEPECIIVAPTRELVNQIYLEARKFSFGTCV 394
Query: 350 XXXXXXXXXELKQQINELKRGVDIIVATPGRFIDLMTLNSGHLLSPTRISFVVMDEADRL 409
+L I ++ +G +I+ ATPGR +D++ + +I ++V+DEADR+
Sbjct: 395 RAVVIYGGTQLGHSIRQIVQGCNILCATPGRLMDIIGKEK---IGLKQIKYLVLDEADRM 451
Query: 410 FDLGFGPQVNQIMGC----IRPDKQCVLFSATFPSKLKHFASRTLK-NPIQITINSKSLI 464
D+GFGP++ +++ C + +Q ++FSATFP +++ A+ LK N + + +
Sbjct: 452 LDMGFGPEMKKLISCPGMPSKEQRQTLMFSATFPEEIQRLAAEFLKSNYLFVAVGQVGGA 511
Query: 465 NENIQQRVQIFDE--EHVKFEFLLKRLSDRLALHRGEDEKTIIFVGSQQXXXXXXXXXXX 522
++QQ V + + K +L+ + D E+T++FV +++
Sbjct: 512 CRDVQQTVLQVGQFSKREKLVEILRNIGD---------ERTMVFVETKKKADFIATFLCQ 562
Query: 523 NGITTFPIHAGKPSAERLRNLQKFKETDNGILICTEVLSRGLNVPEVSLVIIYNAAKTIA 582
I+T IH + ER + L F+ +L+ T V +RGL++ V VI ++ TI
Sbjct: 563 EKISTTSIHGDREQREREQALGDFRFGKCPVLVATSVAARGLDIENVQHVINFDLPSTID 622
Query: 583 QYVHXXXXXXXXXXXXXALSF 603
+YVH A+SF
Sbjct: 623 EYVHRIGRTGRCGNTGRAISF 643
>7293941 [A] KOG0344 ATP-dependent RNA helicase
Length = 594
Score = 166 bits (421), Expect = 1e-40
Identities = 135/489 (27%), Positives = 226/489 (45%), Gaps = 34/489 (6%)
Query: 169 ISQEEAPVDSEILFXXXXXXXXXAIDYSKVLNLITLNKCLYREPNDLGLMSEKDVEELRL 228
+S+ E PV SE I ++L+ + N+ ++P +S K++E +
Sbjct: 36 VSKHEEPVKSE-----ESDKDDEDITEFRLLDGDSSNQPKRKKPKKEKTLSPKELEIQKA 90
Query: 229 SLD--------NIKISGKDCPKPVTKWSQLGLSSEIMDLISNEL---QFVTLTPIQCQAI 277
+ + I++ GK+ P PV + L +++ + L F TPIQ QA+
Sbjct: 91 AEEANETRKQYGIRVLGKNVPPPVDSFGTLTRDFKMLPRLQQNLLSRNFDHPTPIQMQAL 150
Query: 278 PAIMSGRDVIGISKTGSGKTVAFLLPLVRQIKAQPPLAPDETGPIGLILTPTRELAVQIQ 337
P ++ R ++ + TGSGKT+AFL P++ ++A TG L+L PTRELA QI
Sbjct: 151 PVLLQRRALMACAPTGSGKTLAFLTPIINGLRAHKT-----TGLRALVLAPTRELAQQIY 205
Query: 338 EEALKFCKXXXXXXXXXXXXXELKQQIN-ELKRGVDIIVATPGRFIDLMTLNSGHLLSPT 396
E + + E KQ+ E K+ DI+V+TP R + + LL +
Sbjct: 206 RECAELTRETGLRTHFISKVSEAKQKHGAECKQRYDILVSTPNR-VRFLLQQEPPLLDLS 264
Query: 397 RISFVVMDEADRLFDLG---FGPQVNQIMG-CIRPDKQCVLFSATFPSKLKHFASRTLKN 452
+ + V+DEADRL + G F Q++ I C P K FSAT+ + +A R LKN
Sbjct: 265 HVEWFVLDEADRLMEEGQNNFKEQLDDIYAACSNPTKCVAFFSATYTVPVAKWALRHLKN 324
Query: 453 PIQITINSKSLINENIQQRVQIFDEEHVKFEFLLKRLSDRLALHRGEDEKTIIFVGSQQX 512
++ITI ++ E +QQ + E K ++ R + +G ++FV S++
Sbjct: 325 LVRITIGVQNSATETVQQELLFVGSEGGKL------VAIRDLVRQGLQPPVLVFVQSKER 378
Query: 513 XXXXXXXXXXNGITTFPIHAGKPSAERLRNLQKFKETDNGILICTEVLSRGLNVPEVSLV 572
+GI IHA + +R ++ F+E +LICTE++ RG++ V+LV
Sbjct: 379 AKQLFEELLYDGINVDVIHAERSQHQRDNCVKAFREGSIWVLICTELMGRGIDFKGVNLV 438
Query: 573 IIYNAAKTIAQYVHXXXXXXXXXXXXXALSFVMVDELASAYILVKCMKENELSSVPMVVY 632
I Y+ T Y+H A++F ++ ++ + +K N +VP +
Sbjct: 439 INYDFPPTTISYIHRIGRTGRAGRPGRAITFFTQEDTSNLRGIALIIK-NSGGTVPEYML 497
Query: 633 QKLKEMNDE 641
Q K E
Sbjct: 498 QMKKVRKSE 506
>Hs13775232 [A] KOG0331 ATP-dependent RNA helicase
Length = 580
Score = 166 bits (420), Expect = 1e-40
Identities = 118/381 (30%), Positives = 197/381 (50%), Gaps = 18/381 (4%)
Query: 208 LYREPNDLGLMSEKDVEELRLSLDNIKISGKDCPKPVTKWSQLGLSSEIMDLISNELQFV 267
+Y+E + + E +E L+ L I + G++ +P+ + L E+++ + +
Sbjct: 167 VYKEHPFILNLQEDQIENLKQQL-GILVQGQEVTRPIIDFEHCSLP-EVLNHNLKKSGYE 224
Query: 268 TLTPIQCQAIPAIMSGRDVIGISKTGSGKTVAFLLPLVRQIKAQPPLAPDETGPIGLILT 327
TPIQ Q IP + GRD++ + TGSGKT AFLLP++ + L +T P LILT
Sbjct: 225 VPTPIQMQMIPVGLLGRDILASADTGSGKTAAFLLPVIMRA-----LFESKT-PSALILT 278
Query: 328 PTRELAVQIQEEALKFCKXX-XXXXXXXXXXXELKQQINELKRGVDIIVATPGRFIDLMT 386
PTRELA+QI+ +A + L Q+ L++ V +I+ATPGR +D++
Sbjct: 279 PTRELAIQIERQAKELMSGLPRMKTVLLVGGLPLPPQLYRLQQHVKVIIATPGRLLDIIK 338
Query: 387 LNSGHLLSPTRISFVVMDEADRLFDLGFGPQVNQIMGCIRPDKQCVLFSATFPSKLKHFA 446
+S L + VV+DEAD + +GF QV I+ I D Q +L SAT P+ ++ A
Sbjct: 339 QSSVELCG---VKIVVVDEADTMLKMGFQQQVLDILENIPNDCQTILVSATIPTSIEQLA 395
Query: 447 SRTLKNPIQITINSKSLINENIQQRVQIFDEEHVKFEFLLKRLSDRLALHRGEDEKTIIF 506
S+ L NP++I K+L N++Q + ++ E+ K + L + L+D+ ++F
Sbjct: 396 SQLLHNPVRIITGEKNLPCANVRQ-IILWVEDPAKKKKLFEILNDKKLF----KPPVLVF 450
Query: 507 VGSQ-QXXXXXXXXXXXNGITTFPIHAGKPSAERLRNLQKFKETDNGILICTEVLSRGLN 565
V + G+ + IH+ K ER L+ E D +++ T VL RGL+
Sbjct: 451 VDCKLGADLLSEAVQKITGLKSISIHSEKSQIERKNILKGLLEGDYEVVVSTGVLGRGLD 510
Query: 566 VPEVSLVIIYNAAKTIAQYVH 586
+ V LV+ ++ ++ +YVH
Sbjct: 511 LISVRLVVNFDMPSSMDEYVH 531
>SPAC1F7.02c [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 578
Score = 166 bits (419), Expect = 2e-40
Identities = 140/515 (27%), Positives = 235/515 (45%), Gaps = 36/515 (6%)
Query: 217 LMSEKDVEELRLSLDNIKISGKDCPKPVTKWSQLGLSSEIMDLISNELQFVTLTPIQCQA 276
L +E + E ++ S++ S D + K+S L LS I I E+ F T+T IQ ++
Sbjct: 65 LDNENEDERVQKSVNLNASSTSD----IEKFSDLQLSENIQKAIK-EMGFETMTEIQKRS 119
Query: 277 IPAIMSGRDVIGISKTGSGKTVAFLLPLVRQIKAQPPLAPDETGPIGLILTPTRELAVQI 336
IP +++GRDV+G +KTGSGKT+AFL+P + + A + TG I I++PTRELA+QI
Sbjct: 120 IPPLLAGRDVLGAAKTGSGKTLAFLIPTIEMLYALKFKPRNGTGVI--IISPTRELALQI 177
Query: 337 QEEALKFCKXXXXXXXXXXXXXELKQQINELKRGVDIIVATPGRFIDLMTLNSGHLLSPT 396
A + K + + ++L +GV+++VATPGR +D + G +
Sbjct: 178 FGVAKELLKYHHQTFGIVIGGANRRAEADKLVKGVNLLVATPGRLLDHLQNTKGFVFRNL 237
Query: 397 RISFVVMDEADRLFDLGFGPQVNQIMGCI-RPDKQCVLFSATFPSKLKHFASRTLK-NPI 454
R +V+DEADR+ ++GF ++ QIM + ++Q +LFSAT +K++ A +LK P+
Sbjct: 238 R--SLVIDEADRILEIGFEDEMRQIMKILPSENRQTLLFSATQTTKVEDLARISLKPGPL 295
Query: 455 QITINSKSLIN--ENIQQRVQIFDEEH---VKFEFLLKRLSDRLALHRGEDEKTIIFVGS 509
+ ++S + E ++Q + D + + F FL + L +K I+F+ S
Sbjct: 296 YVNVDSGKPTSTVEGLEQGYVVVDSDKRFLLLFSFLKRNLK----------KKVIVFMSS 345
Query: 510 QQXXXXXXXXXXXNGITTFPIHAGKPSAERLRNLQKFKETDNGILICTEVLSRGLNVPEV 569
+ +H + R +F + GIL+CT V +RGL++P V
Sbjct: 346 CASVKYMAELLNYIDLPVLDLHGKQKQQRRTNTFFEFCNAEKGILLCTNVAARGLDIPAV 405
Query: 570 SLVIIYNAAKTIAQYVH-XXXXXXXXXXXXXALSFVMVDELA-SAYILVKCMKENELSSV 627
++ Y+ Y+H +L F+ EL Y+ + NE
Sbjct: 406 DWIVQYDPPDDPRDYIHRVGRTARGTKGTGKSLMFLAPSELGFLRYLKTAKVSLNEFEFP 465
Query: 628 PMVV------YQKLKEMNDEFSSGLKTGKYRLIQGFGGKGLDHLDELNEAKQSQEYTDYG 681
V +KL N K G +Q + L + ++N+ ++ +G
Sbjct: 466 ANKVANVQSQLEKLVSKNYYLQQSAKDGYRSYLQAYASYSLKSIFDINKLDLAKVAKSFG 525
Query: 682 XXX-XXXXXXXXXSGAT-KMEYTRGKREEGHSTTY 714
SG T K E G ++ H Y
Sbjct: 526 FAHPPNVNITIGASGRTDKKERRAGYNKKNHVDVY 560
>Hs20149629 [A] KOG0330 ATP-dependent RNA helicase
Length = 455
Score = 165 bits (418), Expect = 2e-40
Identities = 108/343 (31%), Positives = 166/343 (47%), Gaps = 15/343 (4%)
Query: 262 NELQFVTLTPIQCQAIPAIMSGRDVIGISKTGSGKTVAFLLPLVRQIKAQPPLAPDETGP 321
++L + T IQ +AIP + GRD+IG+++TGSGKT AF LP++ + P
Sbjct: 40 DQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQRL------ 93
Query: 322 IGLILTPTRELAVQIQEEALKFCKXXXXXXXXXXXXXELKQQINELKRGVDIIVATPGRF 381
L+LTPTRELA QI E+ + Q L + II+ATPGR
Sbjct: 94 FALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRL 153
Query: 382 IDLMTLNSGHLLSPTRISFVVMDEADRLFDLGFGPQVNQIMGCIRPDKQCVLFSATFPSK 441
ID + G L + ++VMDEADR+ ++ F +V++I+ I D++ LFSAT K
Sbjct: 154 IDHLENTKGFNLRA--LKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLFSATMTKK 211
Query: 442 LKHFASRTLKNPIQITINSKSLINENIQQRVQIFDEEHVKFEFLLKRLSDRLALHRGEDE 501
++ LKNP++ ++SK E +QQ IF K +L+ L++
Sbjct: 212 VQKLQRAALKNPVKCAVSSKYQTVEKLQQ-YYIFIPSKFKDTYLVYILNELAG------N 264
Query: 502 KTIIFVGSQQXXXXXXXXXXXNGITTFPIHAGKPSAERLRNLQKFKETDNGILICTEVLS 561
+IF + G T P+H ++RL +L KFK IL+ T+V S
Sbjct: 265 SFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLATDVAS 324
Query: 562 RGLNVPEVSLVIIYNAAKTIAQYVHXXXXXXXXXXXXXALSFV 604
RGL++P V +V+ ++ Y+H A++FV
Sbjct: 325 RGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFV 367
>7291960_2 [A] KOG0337 ATP-dependent RNA helicase
Length = 883
Score = 163 bits (413), Expect = 9e-40
Identities = 123/410 (30%), Positives = 192/410 (46%), Gaps = 28/410 (6%)
Query: 214 DLGLMSEKDVEELR--LSLDN---IKISGKDCPKPVTK------WSQLGLSSEIMDLISN 262
D G +K +E+ SLDN G D K +K + +GL E++ I+
Sbjct: 53 DFGEDRKKQADEIPGFPSLDNDAGTSDRGADILKSKSKKNKSGGFQSMGLGFELIKGITK 112
Query: 263 ELQFVTLTPIQCQAIPAIMSGRDVIGISKTGSGKTVAFLLPLVRQIKAQPPLAPDETGPI 322
+ TPIQ + IP I+ GRDV+ ++KTGSGKT FL+PL +++ + P G
Sbjct: 113 R-GYKVPTPIQRKTIPLILEGRDVVAMAKTGSGKTACFLIPLFEKLQRREPTK----GAR 167
Query: 323 GLILTPTRELAVQIQEEALKFCKXXXXXXXXXXXXXELKQQINELKRGVDIIVATPGRFI 382
LIL+PTRELAVQ + + + + Q + + D+IVATPGRF+
Sbjct: 168 ALILSPTRELAVQTYKFIKELGRFMELKSILVLGGDSMDSQFSAIHTCPDVIVATPGRFL 227
Query: 383 DLMTLNSGHLLSPTRISFVVMDEADRLFDLGFGPQVNQIMGCIRPDKQCVLFSATFPSKL 442
L L S I +VV DEADRLF++GFG Q+N+ + + +Q V+FSAT P L
Sbjct: 228 HLCVEMDLKLNS---IEYVVFDEADRLFEMGFGEQLNETLHRLPSSRQTVMFSATLPKLL 284
Query: 443 KHFASRTLKNPIQITINSKSLINENIQQRVQIF--DEEHVKFEFLLKRLSDRLALHRGED 500
FA L +P+ I ++ +S + + + + D+ + LLK +
Sbjct: 285 VEFARAGLNDPVLIRLDVESKLPDALALKFLYCRPDDRYTALVVLLKYVIP-------VQ 337
Query: 501 EKTIIFVGSQQXXXXXXXXXXXNGITTFPIHAGKPSAERLRNLQKFKETDNGILICTEVL 560
+T++F G+Q GI+ +++ A R N KF +LI T+V
Sbjct: 338 SQTVVFAGTQHHVELISYILTEAGISNASVYSSLDPAARKINTAKFVNKKVSVLIVTDVA 397
Query: 561 SRGLNVPEVSLVIIYNAAKTIAQYVHXXXXXXXXXXXXXALSFVMVDELA 610
+RG+++P + V+ + +VH A S V D+ A
Sbjct: 398 ARGIDIPSLDFVVNLHFPGKPKLFVHRVGRCARAGRTGTAYSIVSTDDTA 447
>CE27553 [A] KOG0337 ATP-dependent RNA helicase
Length = 853
Score = 163 bits (412), Expect = 1e-39
Identities = 107/387 (27%), Positives = 192/387 (48%), Gaps = 34/387 (8%)
Query: 247 WSQLGLSSEIMDLISNELQFVTLTPIQCQAIPAIMSGRDVIGISKTGSGKTVAFLLPLVR 306
W Q+GL + I + F TPIQ + IP IM G+DV+ +S+TGSGKT AF++P+++
Sbjct: 26 WQQIGLDHSVYKAIEKK-GFNQPTPIQRKTIPCIMDGKDVVAMSRTGSGKTAAFVIPMLQ 84
Query: 307 QIKAQPPLAPDETGPIGLILTPTRELAVQIQEEALKFCKXXXXXXXXXXXXXELKQQINE 366
++K + D TG L+++PTRELA+Q + + + ++++Q +
Sbjct: 85 KLKRR-----DTTGIRALMVSPTRELALQTFKVVKELGRFTGLRCACLVGGDQIEEQFST 139
Query: 367 LKRGVDIIVATPGRFIDLMTLNSGHLLSPTRISFVVMDEADRLFDLGFGPQVNQIMGCIR 426
+ DI++ATPGR + ++ L + + +VV DEADRLF++GF Q+ + + I
Sbjct: 140 IHENPDILLATPGRLLHVIVEMD---LRLSYVQYVVFDEADRLFEMGFQDQLTETLKRIP 196
Query: 427 PDKQCVLFSATFPSKLKHFASRTLKNPIQITINSKSLINENI-------QQRVQIFDEEH 479
+Q +LFSAT P L FA L +P+ + ++ +++ + + ++F H
Sbjct: 197 ESRQTLLFSATLPKMLVDFAKAGLTDPMLVRLDVDEKVSDKLSMVFCMCRPDEKLFALLH 256
Query: 480 VKFEFLLKRLSD-----------------RLALHRGEDEKTIIFVGSQQXXXXXXXXXXX 522
+ F K+L + ++ + R E+++T++F + +
Sbjct: 257 LCRNFCFKKLLETSLKKCKISKKKVPLLKKVRMDR-ENKQTVVFCATMKHVEYVVGILHR 315
Query: 523 NGITTFPIHAGKPSAERLRNLQKFKETDNGILICTEVLSRGLNVPEVSLVIIYNAAKTIA 582
GI +++ + R N+QKF E N IL+ T+V +RG+++P + VI +
Sbjct: 316 AGIDCSFVYSQLDATARKMNIQKFHEKQNNILVVTDVAARGVDIPLLDTVINLHFPPKAK 375
Query: 583 QYVHXXXXXXXXXXXXXALSFVMVDEL 609
+VH A+S + DEL
Sbjct: 376 LFVHRVGRVARAGRSGTAISLIANDEL 402
>YMR290c [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 505
Score = 162 bits (409), Expect = 3e-39
Identities = 123/451 (27%), Positives = 221/451 (48%), Gaps = 31/451 (6%)
Query: 244 VTKWSQLGLSSEIMDLISNELQFVTLTPIQCQAIPAIMSGRDVIGISKTGSGKTVAFLLP 303
V K+ +L LS + I ++ F T+T +Q + IP +++GRDV+G +KTGSGKT+AFL+P
Sbjct: 41 VEKFEELKLSQPTLKAIE-KMGFTTMTSVQARTIPPLLAGRDVLGAAKTGSGKTLAFLIP 99
Query: 304 LVRQIKAQPPLAPDETGPIGLILTPTRELAVQIQEEALKFCKXXXXXXXXXXXXXELKQQ 363
+ + + + TG I ++TPTRELA+QI A + + +Q+
Sbjct: 100 AIELLHSLKFKPRNGTGII--VITPTRELALQIFGVARELMEFHSQTFGIVIGGANRRQE 157
Query: 364 INELKRGVDIIVATPGRFIDLMTLNSGHLLSPTRISFVVMDEADRLFDLGFGPQVNQIMG 423
+L +GV++++ATPGR +D + G + + +++DEADR+ ++GF ++ QI+
Sbjct: 158 AEKLMKGVNMLIATPGRLLDHLQNTKGFVFK--NLKALIIDEADRILEIGFEDEMRQIIK 215
Query: 424 CI-RPDKQCVLFSATFPSKLKHFASRTLK-NPIQITI--NSKSLINENIQQRVQIFDEEH 479
+ D+Q +LFSAT +K++ A +L+ P+ I + + + + ++Q + D +
Sbjct: 216 ILPNEDRQSMLFSATQTTKVEDLARISLRPGPLFINVVPETDNSTADGLEQGYVVCDSDK 275
Query: 480 VKFEFLLKRLSDRLALHRGEDEKTIIFVGSQQXXXXXXXXXXXNGITTFPIHAGKPSAER 539
+F L L R + +K I+F+ S + +H + +R
Sbjct: 276 -RFLLLFS------FLKRNQKKKIIVFLSSCNSVKYYAELLNYIDLPVLELHGKQKQQKR 328
Query: 540 LRNLQKFKETDNGILICTEVLSRGLNVPEVSLVIIYNAAKTIAQYVH-XXXXXXXXXXXX 598
+F + GILICT+V +RGL++P V +I ++ Y+H
Sbjct: 329 TNTFFEFCNAERGILICTDVAARGLDIPAVDWIIQFDPPDDPRDYIHRVGRTARGTKGKG 388
Query: 599 XALSFVMVDELASAYILVKCMK---------ENELSSVPMVVYQKLKEMNDEFSSGLKTG 649
+L F+ +EL L K K EN++++V + +KL + N K G
Sbjct: 389 KSLMFLTPNELGFLRYL-KASKVPLNEYEFPENKIANVQSQL-EKLIKSNYYLHQTAKDG 446
Query: 650 KYRLIQGFGGKGLD---HLDELNEAKQSQEY 677
+Q + L +D+L+ AK ++ Y
Sbjct: 447 YRSYLQAYASHSLKTVYQIDKLDLAKVAKSY 477
>SPAC30D11.03 [A] KOG0338 ATP-dependent RNA helicase
Length = 754
Score = 162 bits (409), Expect = 3e-39
Identities = 117/374 (31%), Positives = 185/374 (49%), Gaps = 19/374 (5%)
Query: 219 SEKDVEELRLSLDNIKISGKDCPKPV-----TKWSQLGLSSEIMDLISNELQFVTLTPIQ 273
SE+D EE+ + N + D K + + + + LS I+ +SN L F T IQ
Sbjct: 230 SEEDEEEI--AKKNAFFAEGDKEKSMMTTTHSSFQSMNLSRPILKGLSN-LGFEVPTQIQ 286
Query: 274 CQAIPAIMSGRDVIGISKTGSGKTVAFLLPLVRQIKAQPPLAPDETGPIGLILTPTRELA 333
+ IP + G+D++G + TGSGKT AF++P++ ++ +P P LIL PTRELA
Sbjct: 287 DKTIPLALLGKDIVGAAVTGSGKTAAFIVPILERLLYRPKKVPTTRV---LILCPTRELA 343
Query: 334 VQIQEEALKFCKXXXXXXXXXXXXXELKQQINELKRGVDIIVATPGRFIDLMTLNSGHLL 393
+Q A K LK Q EL++ DI++ATPGRFID M + G +
Sbjct: 344 MQCHSVATKIASFTDIMVCLCIGGLSLKLQEQELRKRPDIVIATPGRFIDHMRNSQGFTV 403
Query: 394 SPTRISFVVMDEADRLFDLGFGPQVNQIMGCIRPDKQCVLFSATFPSKLKHFASRTLKNP 453
I +VMDEADR+ + GF ++N+I+ +Q +LFSAT K+ +L P
Sbjct: 404 E--NIEIMVMDEADRMLEDGFADELNEIIQACPKSRQTMLFSATMTDKVDDLIRLSLNRP 461
Query: 454 IQITI-NSKSLINENIQQRVQIFDEEHVKFEFLLKRLSDRLALHRGEDEKTIIFVGSQQX 512
+++ + N K+ Q+ V++ + + +L L L HR +TIIF S+
Sbjct: 462 VRVFVDNKKTTAKLLTQEFVRVRPQRELLRPAMLIYLCKEL-FHR----RTIIFFRSKAF 516
Query: 513 XXXXXXXXXXNGITTFPIHAGKPSAERLRNLQKFKETDNGILICTEVLSRGLNVPEVSLV 572
+ IH +R+R L+ F++ L+ T+V SRG+++ + +V
Sbjct: 517 AHKMRVIFGLLSLNATEIHGSLSQEQRVRALEDFRDGKCNYLLATDVASRGIDIKGIEVV 576
Query: 573 IIYNAAKTIAQYVH 586
I Y A T Y+H
Sbjct: 577 INYEAPATHEVYLH 590
>CE00337 [A] KOG0330 ATP-dependent RNA helicase
Length = 489
Score = 161 bits (407), Expect = 4e-39
Identities = 126/451 (27%), Positives = 216/451 (46%), Gaps = 58/451 (12%)
Query: 247 WSQLGLSSEIMDLISNELQFVTLTPIQCQAIPAIMSGRDVIGISKTGSGKTVAFLLPLVR 306
+++LG+S + D L ++ + IQ A+P + G+DVIG+++TGSGKT AF +P+++
Sbjct: 46 FAELGVSQPLCDACQR-LGWMKPSKIQQAALPHALQGKDVIGLAETGSGKTGAFAIPVLQ 104
Query: 307 QIKAQPPLAPDETGPIGLILTPTRELAVQIQEEALKFCKXXXXXXXXXXXXXELKQQINE 366
+ P L+LTPTRELA QI ++ ++ Q
Sbjct: 105 SLLDHPQAF------FCLVLTPTRELAFQIGQQFEALGSGIGLIAAVIVGGVDMAAQAMA 158
Query: 367 LKRGVDIIVATPGRFIDLMTLNSGHLLSPTRISFVVMDEADRLFDLGFGPQVNQIMGCIR 426
L R IIVATPGR +D + G L + F++MDEADR+ ++ F ++++I+ I
Sbjct: 159 LARRPHIIVATPGRLVDHLENTKGFNLKA--LKFLIMDEADRILNMDFEVELDKILKVIP 216
Query: 427 PDKQCVLFSATFPSKLKHFASRTLKNPIQITINSKSLINENIQQRVQIFDEEHVKFEFLL 486
+++ LFSAT K+ +L++P +++++S+ +N++Q IF K +L+
Sbjct: 217 RERRTYLFSATMTKKVSKLERASLRDPARVSVSSRYKTVDNLKQHY-IFVPNKYKETYLV 275
Query: 487 KRLSDRLALHRGEDEKTIIFVGSQQXXXXXXXXXXXNGITTFPIHAGKPSAERLRNLQKF 546
L++ H G I+F + G+ P+H +RL +L KF
Sbjct: 276 YLLNE----HAGNS--AIVFCATCATTMQIAVMLRQLGMQAVPLHGQMSQEKRLGSLNKF 329
Query: 547 KETDNGILICTEVLSRGLNVPEVSLVIIYNAAKTIAQYVHXXXXXXXXXXXXXALSFVMV 606
K IL+CT+V +RGL++P V +VI Y+ YVH A++ V
Sbjct: 330 KSKAREILVCTDVAARGLDIPHVDMVINYDMPSQSKDYVHRVGRTARAGRSGIAITVVTQ 389
Query: 607 DELASAYILV-----------KCMKENELSSVPMVVYQK-----------LKEMNDEFSS 644
++ AY + KC+ ENE+ MV+ ++ +KEM+++ S
Sbjct: 390 YDV-EAYQKIEANLGKKLDEYKCV-ENEV----MVLVERTQEATENARIEMKEMDEKKKS 443
Query: 645 GLKT-------------GKYRL-IQGFGGKG 661
G K G++++ I+ GG+G
Sbjct: 444 GKKRRQNDDFGDTEESGGRFKMGIKSMGGRG 474
>7298752 [A] KOG0330 ATP-dependent RNA helicase
Length = 507
Score = 160 bits (406), Expect = 6e-39
Identities = 119/404 (29%), Positives = 193/404 (47%), Gaps = 26/404 (6%)
Query: 211 EPNDLGLMSEKDVE---------ELRLSLDNIKISGKDCPKPVT-KWSQLGLSSEIMDLI 260
E DLG E++ E E LS ++ K S D + W LGL+ E +
Sbjct: 17 EEEDLGSEEEQEDEDNNHKEGDSEAALSGEDDKGSEDDAAEEQKLTWKDLGLN-EALCQA 75
Query: 261 SNELQFVTLTPIQCQAIPAIMSGRDVIGISKTGSGKTVAFLLPLVRQIKAQPPLAPDETG 320
+EL++ + IQ +AIP + G+DVIG+++TGSGKT AF LP++ + P
Sbjct: 76 CDELKWKAPSKIQREAIPVALQGKDVIGLAETGSGKTGAFALPILHALLENPQRY----- 130
Query: 321 PIGLILTPTRELAVQIQEEALKFCKXXXXXXXXXXXXXELKQQINELKRGVDIIVATPGR 380
L+LTPTRELA QI E+ ++ Q +L + II+ATPGR
Sbjct: 131 -FALVLTPTRELAFQIGEQFEALGSGIGIKCCVVVGGMDMVAQGLQLAKKPHIIIATPGR 189
Query: 381 FIDLMTLNSGHLLSPTRISFVVMDEADRLFDLGFGPQVNQIMGCIRPDKQCVLFSATFPS 440
+D + G L I ++VMDEADR+ ++ F ++++I+ + +++ LFSAT
Sbjct: 190 LVDHLENMKGFNLKA--IKYLVMDEADRILNMDFEVELDKILKVLPRERRTFLFSATMTK 247
Query: 441 KLKHFASRTLKNPIQITINSKSLINENIQQRVQIFDEEHVKFEFLLKRLSDRLALHRGED 500
K+K +LK+P+++ +++K E +QQ +F K +L+ L++
Sbjct: 248 KVKKLQRASLKDPVKVEVSNKYQTVEQLQQS-YLFIPVKYKDVYLVHILNELAG------ 300
Query: 501 EKTIIFVGSQQXXXXXXXXXXXNGITTFPIHAGKPSAERLRNLQKFKETDNGILICTEVL 560
+IF + G+ P+H +RL L KFK + ILI T+V
Sbjct: 301 NSFMIFCSTCNNTVKTALMLRALGLAAIPLHGQMSQNKRLAALNKFKAKNRSILISTDVA 360
Query: 561 SRGLNVPEVSLVIIYNAAKTIAQYVHXXXXXXXXXXXXXALSFV 604
SRGL++P V +V+ ++ Y+H A++ V
Sbjct: 361 SRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITLV 404
>SPAC31A2.07c [A] KOG0337 ATP-dependent RNA helicase
Length = 848
Score = 159 bits (403), Expect = 1e-38
Identities = 119/421 (28%), Positives = 195/421 (46%), Gaps = 44/421 (10%)
Query: 227 RLSLDNIKISGKDCPKPVTKWSQLGLSSEIMDLISNELQFVTLTPIQCQAIPAIMSGRDV 286
+L N + GK + + +GL+ ++ I + F TPIQ + IP ++ GRDV
Sbjct: 51 KLLESNRRTKGKKGNGKASNFQSMGLNQTLLRAIFKK-GFKAPTPIQRKTIPLLLEGRDV 109
Query: 287 IGISKTGSGKTVAFLLPLVRQIKAQPPLAPDETGPIGLILTPTRELAVQIQEEALKFCKX 346
+G+++TGSGKT AF++P++ +K+ LA T LIL+P RELA+Q + F K
Sbjct: 110 VGMARTGSGKTAAFVIPMIEHLKST--LANSNTR--ALILSPNRELALQTVKVVKDFSKG 165
Query: 347 XXXXXXXXXXXXELKQQINELKRGVDIIVATPGRFIDLMTLNSGHLLSPTRISFVVMDEA 406
L++Q + L DI+VATPGRF+ L L S I +VV DEA
Sbjct: 166 TDLRSVAIVGGVSLEEQFSLLSGKPDIVVATPGRFLHLKVEMKLELSS---IEYVVFDEA 222
Query: 407 DRLFDLGFGPQVNQIMGCIRPDKQCVLFSATFPSKLKHFASRTLKNPIQITINSKSLINE 466
DRLF++GF Q+ +I+ + +Q +LFSAT P L FA L++P+ + ++ +S ++
Sbjct: 223 DRLFEMGFAAQLTEILHALPTSRQTLLFSATLPRTLVDFAKAGLQDPVLVRLDVESKVSA 282
Query: 467 NIQQRVQIFDEEHVKFE-FLLKRLSDRLAL------------------------------ 495
++Q F + + E LL L D + L
Sbjct: 283 DLQS--AFFSVKTAEREAALLCILQDIIKLPLKDNVRPREIGNVNNPKKRKRALELALKG 340
Query: 496 -HRGEDEKTIIFVGSQQXXXXXXXXXXXNGITTFPIHAGKPSAERLRNLQKFKETDNGIL 554
G + T++FV ++ G + I+ RL + F+ +L
Sbjct: 341 SESGSPDSTLVFVPTKHHVEYVSELLVQAGYSVSKIYGSLDQEARLNEINNFRLGKTNLL 400
Query: 555 ICTEVLSRGLNVPEVSLVIIYNAAKTIAQYVHXXXXXXXXXXXXXALSFVMVDELASAYI 614
+ T+V SRG+++P ++ VI Y+ +VH A S V ++ + Y+
Sbjct: 401 VVTDVASRGIDIPLLANVINYDFPPQPKVFVHRVGRTARAGRTGWAYSLVRAED--AGYL 458
Query: 615 L 615
L
Sbjct: 459 L 459
>Hs19923595 [A] KOG0337 ATP-dependent RNA helicase
Length = 882
Score = 158 bits (400), Expect = 3e-38
Identities = 118/390 (30%), Positives = 189/390 (48%), Gaps = 23/390 (5%)
Query: 270 TPIQCQAIPAIMSGRDVIGISKTGSGKTVAFLLPLVRQIKAQPPLAPDETGPIGLILTPT 329
TPIQ + IP I+ G+DV+ +++TGSGKT FLLP+ ++K +TG LIL+PT
Sbjct: 120 TPIQRKTIPVILDGKDVVAMARTGSGKTACFLLPMFERLKTHSA----QTGARALILSPT 175
Query: 330 RELAVQIQEEALKFCKXXXXXXXXXXXXXELKQQINELKRGVDIIVATPGRFIDLMTLNS 389
RELA+Q + + K ++ Q L DII+ATPGR + + S
Sbjct: 176 RELALQTLKFTKELGKFTGLKTALILGGDRMEDQFAALHENPDIIIATPGRLVHVAVEMS 235
Query: 390 GHLLSPTRISFVVMDEADRLFDLGFGPQVNQIMGCIRPDKQCVLFSATFPSKLKHFASRT 449
L S + +VV DEADRLF++GF Q+ +I+ + Q VLFSAT P L FA
Sbjct: 236 LKLQS---VEYVVFDEADRLFEMGFAEQLQEIIARLPGGHQTVLFSATLPKLLVEFARAG 292
Query: 450 LKNPIQITINSKSLINENIQQRVQIFDEEHVKFEFLLKRLSDRLALHRGEDEKTIIFVGS 509
L P+ I ++ + +NE ++ + E+ K LL L + + R +D+ T++FV +
Sbjct: 293 LTEPVLIRLDVDTKLNEQLKTSFFLVRED-TKAAVLLHLLHN---VVRPQDQ-TVVFVAT 347
Query: 510 QQXXXXXXXXXXXNGITTFPIHAGKPSAERLRNLQKFKETDNGILICTEVLSRGLNVPEV 569
+ ++ I++ R NL KF LI T++ +RGL++P +
Sbjct: 348 KHHAEYLTELLTTQRVSCAHIYSALDPTARKINLAKFTLGKCSTLIVTDLAARGLDIPLL 407
Query: 570 SLVIIYNAAKTIAQYVHXXXXXXXXXXXXXALSFVMVDE----------LASAYILVKCM 619
VI Y+ ++H A S V DE L + L + +
Sbjct: 408 DNVINYSFPAKGKLFLHRVGRVARAGRSGTAYSLVAPDEIPYLLDLHLFLGRSLTLARPL 467
Query: 620 KE-NELSSVPMVVYQKLKEMNDEFSSGLKT 648
KE + ++ V ++ + + + DE SGL++
Sbjct: 468 KEPSGVAGVDGMLGRVPQSVVDEEDSGLQS 497
>7304081 [A] KOG0338 ATP-dependent RNA helicase
Length = 782
Score = 158 bits (399), Expect = 4e-38
Identities = 101/344 (29%), Positives = 176/344 (50%), Gaps = 11/344 (3%)
Query: 244 VTKWSQLGLSSEIMDLISNELQFVTLTPIQCQAIPAIMSGRDVIGISKTGSGKTVAFLLP 303
+T + Q+ LS +M I L ++ TPIQ IP + GRD+ G + TG+GKT A++LP
Sbjct: 156 ITSFYQMNLSRPLMRAIG-VLGYIYPTPIQASTIPVALLGRDICGCAATGTGKTAAYMLP 214
Query: 304 LVRQIKAQPPLAPDETGPIGLILTPTRELAVQIQEEALKFCKXXXXXXXXXXXXXELKQQ 363
+ ++ +P ++ L+L PTREL Q+ + + C+ ++K Q
Sbjct: 215 TLERLLYRP--LNNKAITRVLVLVPTRELGAQVYQVTKQLCQFTTIDVGLAIGGLDVKAQ 272
Query: 364 INELKRGVDIIVATPGRFIDLMTLNSGHLLSPTRISFVVMDEADRLFDLGFGPQVNQIMG 423
L++ DI++ATPGR ID + L I +++DEADR+ D F Q+ +I+
Sbjct: 273 EAVLRQNPDIVIATPGRLIDHIKNTPSFTLDS--IEVLILDEADRMLDEYFAEQMKEIIN 330
Query: 424 CIRPDKQCVLFSATFPSKLKHFASRTLKNPIQITINSKSLINENIQQR-VQIFDEEHVKF 482
+Q +LFSAT ++K A+ +L PI++ +N+ + N++Q ++I +++
Sbjct: 331 SCCKTRQTMLFSATMSEQVKDLAAVSLDKPIKVFVNNNQQVAFNLRQEFIRIREDKEGDR 390
Query: 483 EFLLKRLSDRLALHRGEDEKTIIFVGSQQXXXXXXXXXXXNGITTFPIHAGKPSAERLRN 542
E +L L + R + ++FV +++ G+ +H +RL +
Sbjct: 391 EPILASL-----ICRTFHDHCMVFVQTKKQAHRLHILLGLLGVRAGELHGNLTQQQRLES 445
Query: 543 LQKFKETDNGILICTEVLSRGLNVPEVSLVIIYNAAKTIAQYVH 586
L+KFKE +LI T+V +RGL++ V VI + T Y+H
Sbjct: 446 LKKFKEEQIDVLIATDVAARGLDIVGVKTVINFVMPITTEHYIH 489
>SPAC1093.05 [A] KOG0343 RNA Helicase
Length = 735
Score = 157 bits (397), Expect = 6e-38
Identities = 112/398 (28%), Positives = 192/398 (48%), Gaps = 30/398 (7%)
Query: 220 EKDVEELRLSLDNIKISGKDCPKPVTKWSQLGLSSEIMDLISNELQFVTLTPIQCQAIPA 279
E+++EEL ++ + + V +++L L+ + N F+TLT IQ Q IP+
Sbjct: 21 EEEIEELNSQIEALS-------ETVDHFAELPLTQPTKSALKNA-HFITLTEIQKQCIPS 72
Query: 280 IMSGRDVIGISKTGSGKTVAFLLPLVRQIKAQPPLAPDETGPIGLILTPTRELAVQIQEE 339
+ GRD++G +KTGSGKT+AF++PL+ + + + D G L+++PTRELA+Q E
Sbjct: 73 ALKGRDILGAAKTGSGKTLAFIVPLIENLYRKKWTSLDGLG--ALVISPTRELAIQTFET 130
Query: 340 ALKFCKXXXXXXXXXXXXXELKQQINELKRGVDIIVATPGRFIDLMTLNSGHLLSPTRIS 399
+K + K++ L R ++I+V TPGR L ++ + +
Sbjct: 131 LVKIGRLHSFSAGLIIGGNNYKEEKERLSR-MNILVCTPGRL--LQHIDQAVNFDTSGLQ 187
Query: 400 FVVMDEADRLFDLGFGPQVNQIMGCIRPDKQCVLFSATFPSKLKHFASRTLKNP--IQIT 457
+++DEADR+ D+GF ++ I+ + +Q +LFSAT +K A +L+NP I +
Sbjct: 188 MLILDEADRILDMGFRTTLDAIVSSLPVHRQTMLFSATQTKSVKDLARLSLQNPDFISVH 247
Query: 458 INSKSLINENIQQ---RVQIFDEEHVKFEFLLKRLSDRLALHRGEDEKTIIFVGS--QQX 512
N S N+ Q V + ++ + F F+ L KTI+F+ S Q
Sbjct: 248 ENDTSSTPSNLNQFYLTVPLTEKLDILFGFIRTHLK----------FKTIVFLSSCKQVR 297
Query: 513 XXXXXXXXXXNGITTFPIHAGKPSAERLRNLQKFKETDNGILICTEVLSRGLNVPEVSLV 572
GI+ +H + R KF + + +L CT++++RGL+ P V V
Sbjct: 298 FVYETFRRMRPGISLLHLHGKQKQTTRTEVTAKFTSSRHVVLFCTDIVARGLDFPAVDWV 357
Query: 573 IIYNAAKTIAQYVHXXXXXXXXXXXXXALSFVMVDELA 610
I +A + + Y+H AL ++ E A
Sbjct: 358 IQLDAPEDVDTYIHRVGRTARYNRSGNALLLLLPSEEA 395
>Hs17505907 [A] KOG0348 ATP-dependent RNA helicase
Length = 851
Score = 156 bits (395), Expect = 1e-37
Identities = 104/386 (26%), Positives = 186/386 (47%), Gaps = 53/386 (13%)
Query: 249 QLGLSSEIMDLISNELQFVTLTPIQCQAIPAIMSGRDVIGISKTGSGKTVAFLLPLVRQI 308
+LGL ++ I+ L+ ++T +Q Q+IP ++ GRD + S+TGSGKT+A+ +P+V+ +
Sbjct: 234 ELGLHPHLISTINTVLKMSSMTSVQKQSIPVLLEGRDALVRSQTGSGKTLAYCIPVVQSL 293
Query: 309 KAQPPLAPDETGPIGLILTPTRELAVQIQEEALKFCKXXXXXXXXXXXXXE-LKQQINEL 367
+A GP L+L PTRELA+Q + K K E K + L
Sbjct: 294 QAMESKIQRSDGPYALVLVPTRELALQSFDTVQKLLKPFTWIVPGVLMGGEKRKSEKARL 353
Query: 368 KRGVDIIVATPGRFIDLMTLNSGHLLSPTRISFVVMDEADRLFDLGFGPQVNQIMGCIRP 427
++G++I+++TPGR +D + S + +R+ ++V DEADR+ DLGF + I+ +
Sbjct: 354 RKGINILISTPGRLVD--HIKSTKNIHFSRLRWLVFDEADRILDLGFEKDITVILNAVNA 411
Query: 428 D---KQCVLFSATFPSKLKHFASRTLKNPIQITINSKS---------------------- 462
+ +Q VL SAT + A +L +P+ I++ KS
Sbjct: 412 ECQKRQNVLLSATLTEGVTRLADISLHDPVSISVLDKSHDQLNPKDKAVQEVCPPPAGDK 471
Query: 463 ----LINENIQQRVQIFDEEHVKFEFLLKRLSDRLALHRGEDEKTIIFVGSQQXXXXXXX 518
I E+++Q V + + ++ L + + ED+K ++F S +
Sbjct: 472 LDSFAIPESLKQHVTVVPSK-LRLVCLAAFILQKCKFE--EDQKMVVFFSSCELVEFHYS 528
Query: 519 XXXXNGITT------------------FPIHAGKPSAERLRNLQKFKETDNGILICTEVL 560
+++ +H G ER Q+F + G+L+CT+V
Sbjct: 529 LFLQTLLSSSGAPASGQLPSASMRLKFLRLHGGMEQEERTAVFQEFSHSRRGVLLCTDVA 588
Query: 561 SRGLNVPEVSLVIIYNAAKTIAQYVH 586
+RGL++P+V+ ++ YNA + A+Y+H
Sbjct: 589 ARGLDLPQVTWIVQYNAPSSPAEYIH 614
>7299006 [A] KOG0345 ATP-dependent RNA helicase
Length = 613
Score = 156 bits (395), Expect = 1e-37
Identities = 119/387 (30%), Positives = 193/387 (49%), Gaps = 26/387 (6%)
Query: 246 KWSQLG---LSSEIMDLISNELQFVTLTPIQCQAIPAIMSGRDVIGISKTGSGKTVAFLL 302
KWS L LS ++ ++ + F +TP+Q AIP +++ +DV + TGSGKT+AFL+
Sbjct: 5 KWSSLDKPPLSDAVLQVVQS-FGFQQMTPVQTAAIPLLLARKDVSAEAVTGSGKTLAFLV 63
Query: 303 PLVRQIKA---QPPLAPDETGPIGLILTPTRELAVQIQEEALKFCKXXXXXXXXXXXXX- 358
P++ ++ + P P E G L+++PTRELA QI E +F +
Sbjct: 64 PMLEILQRRHKETPWGPKEIG--ALVISPTRELARQISEVLAQFLEHEDLEHLNQQLIVG 121
Query: 359 --ELKQQINELKRGVD-IIVATPGRFIDLMTLNSGHLLSPTRIS---FVVMDEADRLFDL 412
+++ I L+R I+V TPGR DL L ++ F+V+DEADRL DL
Sbjct: 122 GNSIEEDIATLRRETPCILVCTPGRLEDLFQRKGDDLNLAAQVKSLEFLVLDEADRLLDL 181
Query: 413 GFGPQVNQIMGCIRPDKQCVLFSATFPSKLKHFASRTLKNPIQITINSKSLIN--ENIQQ 470
GF VN I+G + ++ LFSAT +++ L+NP+ +++ K+ +N +Q
Sbjct: 182 GFKTSVNNILGYLPRQRRTGLFSATQTTEVTDLIRAGLRNPVLVSVKEKASVNTPARLQN 241
Query: 471 RVQIFDEEHVKFEFLLKRLSDRLALHRGEDEKTIIFVGSQQXXXXXXXXX--XXNGITTF 528
+I + E +KF LL+ LS + K ++F + T
Sbjct: 242 FYRIVEPE-LKFVALLEFLSSPATV----IGKVMVFFPTCACVEYWAEALPPLLPKRTVL 296
Query: 529 PIHAGKPSAERLRNLQKFKETDNGILICTEVLSRGLNVPEVSLVIIYNAAKTIAQYVHXX 588
IH GK +R ++KF+ T +L+CT+VL+RGL+VPE+ V+ ++ T + +VH
Sbjct: 297 GIH-GKMKNKRANVVEKFRNTPQAVLLCTDVLARGLDVPEIEWVVQWDPPSTASSFVHRV 355
Query: 589 XXXXXXXXXXXALSFVMVDELASAYIL 615
AL F++ E A + L
Sbjct: 356 GRTARQGNEGNALVFLLPSEDAYVHFL 382
>Hs19743937 [A] KOG0338 ATP-dependent RNA helicase
Length = 796
Score = 155 bits (393), Expect = 2e-37
Identities = 111/376 (29%), Positives = 181/376 (47%), Gaps = 14/376 (3%)
Query: 247 WSQLGLSSEIMDLISNELQFVTLTPIQCQAIPAIMSGRDVIGISKTGSGKTVAFLLPLVR 306
+ + LS ++ I+ + F TPIQ IP + G+D+ + TG+GKT AF LP++
Sbjct: 220 FQDMNLSRPLLKAIT-AMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLE 278
Query: 307 QIKAQPPLAPDETGPIGLILTPTRELAVQIQEEALKFCKXXXXXXXXXXXXXELKQQINE 366
++ +P AP L+L PTREL +Q+ + + ++K Q
Sbjct: 279 RLIYKPRQAPVTRV---LVLVPTRELGIQVHSVTRQLAQFCNITTCLAVGGLDVKSQEAA 335
Query: 367 LKRGVDIIVATPGRFID-LMTLNSGHLLSPTRISFVVMDEADRLFDLGFGPQVNQIMGCI 425
L+ DI++ATPGR ID L S HL S I +++DEADR+ D F Q+ +I+
Sbjct: 336 LRAAPDILIATPGRLIDHLHNCPSFHLSS---IEVLILDEADRMLDEYFEEQMKEIIRMC 392
Query: 426 RPDKQCVLFSATFPSKLKHFASRTLKNPIQITINSKSLINENIQQR-VQIFDEEHVKFEF 484
+Q +LFSAT ++K AS +LKNP++I +NS + + ++Q ++I E
Sbjct: 393 SHHRQTMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREA 452
Query: 485 LLKRLSDRLALHRGEDEKTIIFVGSQQXXXXXXXXXXXNGITTFPIHAGKPSAERLRNLQ 544
++ L L R + ++F +++ G+ +H +RL L+
Sbjct: 453 IVAAL-----LTRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALR 507
Query: 545 KFKETDNGILICTEVLSRGLNVPEVSLVIIYNAAKTIAQYVHXXXXXXXXXXXXXALSFV 604
+FK+ IL+ T+V +RGL++ V VI + TI YVH ++S V
Sbjct: 508 RFKDEQIDILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLV 567
Query: 605 MVDELASAYILVKCMK 620
DE +VK K
Sbjct: 568 GEDERKMLKEIVKAAK 583
>At1g77050 [A] KOG0337 ATP-dependent RNA helicase
Length = 513
Score = 155 bits (393), Expect = 2e-37
Identities = 100/340 (29%), Positives = 172/340 (50%), Gaps = 11/340 (3%)
Query: 270 TPIQCQAIPAIMSGRDVIGISKTGSGKTVAFLLPLVRQIKAQPPLAPDETGPIGLILTPT 329
TPIQ + +P I+SG DV+ +++TGSGKT AFL+P++ ++K P + G LIL+PT
Sbjct: 52 TPIQRKTMPLILSGVDVVAMARTGSGKTAAFLIPMLEKLKQHVP----QGGVRALILSPT 107
Query: 330 RELAVQIQEEALKFCKXXXXXXXXXXXXXELKQQINELKRGVDIIVATPGRFIDLMTLNS 389
R+LA Q + + K ++ Q EL +G D+I+ATPGR + L++
Sbjct: 108 RDLAEQTLKFTKELGKFTDLRVSLLVGGDSMEDQFEELTKGPDVIIATPGRLMHLLSEVD 167
Query: 390 GHLLSPTRISFVVMDEADRLFDLGFGPQVNQIMGCIRPDKQCVLFSATFPSKLKHFASRT 449
L + +VV DEAD LF +GF Q++QI+ + ++Q +LFSAT PS L FA
Sbjct: 168 DMTLRT--VEYVVFDEADSLFGMGFAEQLHQILTQLSENRQTLLFSATLPSALAEFAKAG 225
Query: 450 LKNPIQITINSKSLINENIQQRVQIFDEEHVKFEFLLKRLSDRLALHRGEDEKTIIFVGS 509
L+ P + ++ ++ I+ +++ E K+ LL + + H D++T+IFV +
Sbjct: 226 LREPQLVRLDVENKISPDLKLSFLTVRPEE-KYSALLYLVRE----HISSDQQTLIFVST 280
Query: 510 QQXXXXXXXXXXXNGITTFPIHAGKPSAERLRNLQKFKETDNGILICTEVLSRGLNVPEV 569
+ I + R ++ +F+ +LI T++ +RG+++P +
Sbjct: 281 KHHVEFVNSLFKLENIEPSVCYGDMDQDARKIHVSRFRARKTMLLIVTDIAARGIDIPLL 340
Query: 570 SLVIIYNAAKTIAQYVHXXXXXXXXXXXXXALSFVMVDEL 609
VI ++ +VH A SFV +++
Sbjct: 341 DNVINWDFPPRPKIFVHRVGRAARAGRTGCAYSFVTPEDM 380
>YGL078c [A] KOG0331 ATP-dependent RNA helicase
Length = 523
Score = 155 bits (392), Expect = 2e-37
Identities = 109/353 (30%), Positives = 180/353 (50%), Gaps = 26/353 (7%)
Query: 242 KPVTKWSQLGLSSEIMDLISNELQFVTLTPIQCQAIPAIMSGRDVIGISKTGSGKTVAFL 301
+P+ + L L S I IS +F TPIQ A P ++SG+DV+G+++TGSGKT AF
Sbjct: 111 RPLLSFDYLSLDSSIQAEIS---KFPKPTPIQAVAWPYLLSGKDVVGVAETGSGKTFAFG 167
Query: 302 LPLVRQIKAQPPLAPDETGPIGLILTPTRELAVQIQEEALKFCKXXXXXXXXXXXXXELK 361
+P + + + G L+++PTRELA QI + +
Sbjct: 168 VPAISHLMNDQK----KRGIQVLVISPTRELASQIYDNLIVLTDKVGMQCCCVYGGVPKD 223
Query: 362 QQINELKRGVDIIVATPGRFIDLMTLNSGHLLSPTRISFVVMDEADRLFDLGFGPQVNQI 421
+Q +LK+ ++VATPGR +DL+ S L ++++++V+DEADR+ + GF + I
Sbjct: 224 EQRIQLKKS-QVVVATPGRLLDLLQEGSVDL---SQVNYLVLDEADRMLEKGFEEDIKNI 279
Query: 422 MGCIRPDK-QCVLFSATFPSKLKHFASRTLKNPIQITINSKSLI--NENIQQRVQIFD-- 476
+ K Q ++F+AT+P +++ AS + NPI+++I + + N+ I Q V++ D
Sbjct: 280 IRETDASKRQTLMFTATWPKEVRELASTFMNNPIKVSIGNTDQLTANKRITQIVEVVDPR 339
Query: 477 -EEHVKFEFLLKRLSDRLALHRG--EDEKTIIFVGSQQXXXXXXXXXXXNGITTFPIHAG 533
+E E L K H G ++EK +IF ++ NG IH
Sbjct: 340 GKERKLLELLKK-------YHSGPKKNEKVLIFALYKKEAARVERNLKYNGYNVAAIHGD 392
Query: 534 KPSAERLRNLQKFKETDNGILICTEVLSRGLNVPEVSLVIIYNAAKTIAQYVH 586
+R + L +FK + +L+ T+V +RGL++P V VI T+ YVH
Sbjct: 393 LSQQQRTQALNEFKSGKSNLLLATDVAARGLDIPNVKTVINLTFPLTVEDYVH 445
>YHR065c [A] KOG0330 ATP-dependent RNA helicase
Length = 543
Score = 154 bits (389), Expect = 5e-37
Identities = 115/422 (27%), Positives = 198/422 (46%), Gaps = 23/422 (5%)
Query: 247 WSQLGLSSEIMDLISNELQFVTLTPIQCQAIPAIMSGRDVIGISKTGSGKTVAFLLPLVR 306
+S+L L E++ N L + TPIQ +AIP + G D+IG+++TGSGKT AF +P++
Sbjct: 125 FSELNLVPELIQACKN-LNYSKPTPIQSKAIPPALEGHDIIGLAQTGSGKTAAFAIPILN 183
Query: 307 QIKAQPPLAPDETGPIGLILTPTRELAVQIQEEALKFCKXXXXXXXXXXXXXELKQQINE 366
+ L D+ IL PTRELA QI+E + Q +
Sbjct: 184 R------LWHDQEPYYACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMNMMDQARD 237
Query: 367 LKRGVDIIVATPGRFIDLMTLNSGHLLSPTRISFVVMDEADRLFDLGFGPQVNQIMGCI- 425
L R II+ATPGR +D + G S ++ F+VMDEADRL D+ FGP +++I+ I
Sbjct: 238 LMRKPHIIIATPGRLMDHLENTKG--FSLRKLKFLVMDEADRLLDMEFGPVLDRILKIIP 295
Query: 426 RPDKQCVLFSATFPSKLKHFASRTLKNPIQITINSKSLINENIQQRVQIFDEEHVKFEFL 485
++ LFSAT SK+ +L NP++ +++K + + Q + + +K +L
Sbjct: 296 TQERTTYLFSATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVV-PGGLKNTYL 354
Query: 486 LKRLSDRLALHRGEDEKTIIFVGSQQXXXXXXXXXXXNGITTFPIHAGKPSAERLRNLQK 545
+ L++ + + IIF ++ + +H +R+ +L
Sbjct: 355 IYLLNEFIG------KTMIIFTRTKANAERLSGLCNLLEFSATALHGDLNQNQRMGSLDL 408
Query: 546 FKETDNGILICTEVLSRGLNVPEVSLVIIYNAAKTIAQYVHXXXXXXXXXXXXXALSFVM 605
FK IL+ T+V +RGL++P V +V+ Y+ Y+H ++S V
Sbjct: 409 FKAGKRSILVATDVAARGLDIPSVDIVVNYDIPVDSKSYIHRVGRTARAGRSGKSISLVS 468
Query: 606 VDEL-----ASAYILVKCMKENELSSVPMVVYQKLKEMNDEFSSGL-KTGKYRLIQGFGG 659
+L + K KE+ ++ + + + + N E + + K ++ +G G
Sbjct: 469 QYDLELILRIEEVLGKKLPKESVDKNIILTLRDSVDKANGEVVMEMNRRNKEKIARGKGR 528
Query: 660 KG 661
+G
Sbjct: 529 RG 530
>At3g18600 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 568
Score = 153 bits (386), Expect = 1e-36
Identities = 113/418 (27%), Positives = 195/418 (46%), Gaps = 30/418 (7%)
Query: 220 EKDVEELRLSLD--NIKISGKDCPKPVTKWSQLGLSSEIMDLISNELQFVTLTPIQCQAI 277
E+ VE + D NI I GK VT + L LS + I E+ F +T IQ +I
Sbjct: 63 EEKVEAMEDGEDEKNIVIVGKGIMTNVT-FDSLDLSEQTSIAIK-EMGFQYMTQIQAGSI 120
Query: 278 PAIMSGRDVIGISKTGSGKTVAFLLPLVRQIKAQPPLAPDETGPIGLILTPTRELAVQIQ 337
++ G+DV+G ++TGSGKT+AFL+P V + + + TG I ++ PTRELA+Q +
Sbjct: 121 QPLLEGKDVLGAARTGSGKTLAFLIPAVELLFKERFSPRNGTGVI--VICPTRELAIQTK 178
Query: 338 EEALKFCKXXXXXXXXXXXXXELKQQINELKRGVDIIVATPGRFIDLMTLNSGHLLSPTR 397
A + K + + + G ++++ATPGR +D + +
Sbjct: 179 NVAEELLKHHSQTVSMVIGGNNRRSEAQRIASGSNLVIATPGRLLDHLQNTKAFIYK--H 236
Query: 398 ISFVVMDEADRLFDLGFGPQVNQIMGCIRPDKQCVLFSATFPSKLKHFASRTLKNPIQIT 457
+ +V+DEADR+ + F +N+I+ + +Q LFSAT SK+K A +L +P+ +
Sbjct: 237 LKCLVIDEADRILEENFEEDMNKILKILPKTRQTALFSATQTSKVKDLARVSLTSPVHVD 296
Query: 458 INS--KSLINENIQQRVQIFDEEH---VKFEFLLKRLSDRLALHRGEDEKTIIFVGSQQX 512
++ + + NE ++Q + + + FL K L ++K ++F + +
Sbjct: 297 VDDGRRKVTNEGLEQGYCVVPSKQRLILLISFLKKNL----------NKKIMVFFSTCKS 346
Query: 513 XXXXXXXXXXNGITTFPIHAGKPSAERLRNLQKFKETDNGILICTEVLSRGLNVPEVSLV 572
+ + IH G R + F + GIL+CT+V +RGL++P V +
Sbjct: 347 VQFHTEIMKISDVDVSDIHGGMDQNRRTKTFFDFMKAKKGILLCTDVAARGLDIPSVDWI 406
Query: 573 IIYNAAKTIAQYVHXXXXXXXXXXXXXALSFVMVDE-------LASAYILVKCMKENE 623
I Y+ +Y+H V++ E L +A + VK ++ NE
Sbjct: 407 IQYDPPDKPTEYIHRVGRTARGEGAKGKALLVLIPEELQFIRYLKAAKVPVKELEFNE 464
>CE27030 [A] KOG0338 ATP-dependent RNA helicase
Length = 763
Score = 152 bits (383), Expect = 3e-36
Identities = 121/429 (28%), Positives = 199/429 (46%), Gaps = 48/429 (11%)
Query: 235 ISGKDCPKPVT-KWSQLGLSSEIMDLISNELQFVTLTPIQCQAIPAIMSGRDVIGISKTG 293
I GK V + Q+ LS +I+ S + TPIQ IP ++G+D+ + TG
Sbjct: 137 IDGKSLDTSVNVSFEQMNLSRQILKACSGA-GYSDPTPIQQACIPVALTGKDICACAATG 195
Query: 294 SGKTVAFLLPLVRQIKAQPPLAPDETGPIGLILTPTRELAVQIQEEALKFCKXXXXXXXX 353
+GKT AF+LP++ ++ +P A L+L PTRELA+Q+ + K
Sbjct: 196 TGKTAAFVLPILERMIYRPKGASCTRV---LVLVPTRELAIQVFQVFRKLSTFIQLEVCL 252
Query: 354 XXXXXELKQQINELKRGVDIIVATPGRFIDLMTLNSGHLLSPTRISF------------- 400
+LK Q L+ G D++VATPGR ID + + LS + F
Sbjct: 253 CAGGLDLKAQEAALRSGPDVVVATPGRLIDHLHNSPSFNLSNIEVFFKTPNIPPKKNSRK 312
Query: 401 ---------VVMDEADRLFDLGFGPQVNQIMGCIRPDKQCVLFSATFPSKLKHFASRTLK 451
+V+DEADR+ + F Q+N+++ ++Q +LFSAT ++ AS +L+
Sbjct: 313 ICKIPNFQVLVLDEADRMLEEAFRDQMNELIRLCAQNRQTLLFSATMTEEIDELASMSLQ 372
Query: 452 NPIQITINSKSLINENIQQRVQIFDEEHVKFEFLLKRLSDRLAL-----HRGEDEKTIIF 506
P++I INEN +++ +E ++ R +DR A+ R TI+F
Sbjct: 373 KPVKI------FINENTDTALKL-RQEFIRIR--AGRETDREAMVAALVTRTFQTNTIVF 423
Query: 507 VGSQQXXXXXXXXXXXNGITTFPIHAGKPSAERLRNLQKFKETDNGILICTEVLSRGLNV 566
V +++ GI + + +R+ +L KFK+ + +L+ T++ SRGL++
Sbjct: 424 VRTKKDCQRMQILLGLLGIKVGQMQSSLTQGQRIESLSKFKKAEIDVLVSTDLASRGLDI 483
Query: 567 PEVSLVIIYNAAKTIAQYVHXXXXXXXXXXXXXALSFVMVDELASAYILVKCMKENELSS 626
V VI N K+I QY+H ++S V DE K +KE S+
Sbjct: 484 EGVQTVINMNMPKSIKQYIHRVGRTARAGKAGRSISLVGEDER-------KLLKEIVNSN 536
Query: 627 VPMVVYQKL 635
+ Q+L
Sbjct: 537 ADRTLKQRL 545
>CE07736 [A] KOG0335 ATP-dependent RNA helicase
Length = 720
Score = 150 bits (379), Expect = 8e-36
Identities = 112/374 (29%), Positives = 175/374 (45%), Gaps = 20/374 (5%)
Query: 266 FVTLTPIQCQAIPAIMSGRDVIGISKTGSGKTVAFLLPLVRQIKAQPPLAPDETG---PI 322
+ TPIQ +P + G+D++ ++TGSGKT AFLLP++ ++ + L G P
Sbjct: 318 YTRTTPIQQYTLPLVADGKDILACAQTGSGKTAAFLLPIMSRLILEKDLNYGAEGGCYPR 377
Query: 323 GLILTPTRELAVQIQEEALKFCKXXXXXXXXXXXXXELKQQINELKRGVDIIVATPGRFI 382
+ILTPTRELA QI E KF + +++ +G IIV T GR
Sbjct: 378 CIILTPTRELADQIYNEGRKFSYQSVMEIKPVYGGINVGYNKSQIMKGCTIIVGTIGR-- 435
Query: 383 DLMTLNSGHLLSPTRISFVVMDEADRLFD-LGFGPQVNQIMGCIRPDK----QCVLFSAT 437
+ + + ++V+DEADR+ D +GFGP++ QI+ K Q ++FSAT
Sbjct: 436 -VKHFCEDGAIKLDKCRYLVLDEADRMIDSMGFGPEIEQIINYKNMPKNDKRQTMMFSAT 494
Query: 438 FPSKLKHFASRTLKNPI-QITINSKSLINENIQQRVQIFDEEHVKFEFLLKRLS---DRL 493
FPS ++ A + L+ ITI+ N+ + Q ++ D K + LLK L D
Sbjct: 495 FPSSVQEAARKLLREDYTMITIDKIGAANKCVIQEFELCDRTS-KVDKLLKLLGIDIDTY 553
Query: 494 ALHRGED---EKTIIFVGSQQXXXXXXXXXXXNGITTFPIHAGKPSAERLRNLQKFKETD 550
+ D +KTI+FV Q+ + IH + ER L+ F+
Sbjct: 554 TTEKNSDVFVKKTIVFVAQQKMADTLASIMSAAQVPAITIHGAREQKERSAALKLFRSGA 613
Query: 551 NGILICTEVLSRGLNVPEVSLVIIYNAAKTIAQYVHXXXXXXXXXXXXXALSFV-MVDEL 609
+LI T V+ RGL++ V VI Y+ I Y+H A SF+ + D++
Sbjct: 614 KPVLIATAVVERGLDIKGVDHVINYDMPNNIDDYIHRIGRTGRVGNSGRATSFISLADDV 673
Query: 610 ASAYILVKCMKENE 623
LV+ + + E
Sbjct: 674 QILPQLVRTLADAE 687
>Hs15316941 [A] KOG0344 ATP-dependent RNA helicase
Length = 491
Score = 149 bits (377), Expect = 1e-35
Identities = 109/384 (28%), Positives = 183/384 (47%), Gaps = 20/384 (5%)
Query: 233 IKISGKDCPKPVTKWSQLGLSSEIMD-LISNELQ--FVTLTPIQCQAIPAIMSGRDVIGI 289
I + G D P P+ + QL +I L+ N L F TPIQ QAIP ++ GR+++
Sbjct: 41 IHVQGTDLPDPIATFQQLDQEYKINSRLLQNILDAGFQMPTPIQMQAIPVMLHGRELLAS 100
Query: 290 SKTGSGKTVAFLLPLVRQIKAQPPLAPDETGPIGLILTPTRELAVQIQEEALKFCKXXXX 349
+ TGSGKT+AF +P++ Q+K P G LI++PTRELA QI E +K +
Sbjct: 101 APTGSGKTLAFSIPILMQLKQ-----PANKGFRALIISPTRELASQIHRELIKISEGTGF 155
Query: 350 XXXXXXXXXELKQQIN-ELKRGVDIIVATPGRFIDLMTLNSGHLLSPTRISFVVMDEADR 408
++ + + DI+V TP R I L+ + + + ++V+DE+D+
Sbjct: 156 RIHMIHKAAVAAKKFGPKSSKKFDILVTTPNRLIYLLKQDPPGI-DLASVEWLVVDESDK 214
Query: 409 LFD---LGFGPQVNQI-MGCIRPDKQCVLFSATFPSKLKHFASRTLKNPIQITINSKSLI 464
LF+ GF Q+ I + C + +FSATF ++ + L N I ++I +++
Sbjct: 215 LFEDGKTGFRDQLASIFLACTSHKVRRAMFSATFAYDVEQWCKLNLDNVISVSIGARNSA 274
Query: 465 NENIQQRVQIFDEEHVKFEFLLKRLSDRLALHRGEDEKTIIFVGSQQXXXXXXXXXXXNG 524
E ++Q + E K L+ R + +G + ++FV S + G
Sbjct: 275 VETVEQELLFVGSETGKL------LAMRELVKKGFNPPVLVFVQSIERAKELFHELIYEG 328
Query: 525 ITTFPIHAGKPSAERLRNLQKFKETDNGILICTEVLSRGLNVPEVSLVIIYNAAKTIAQY 584
I IHA + +R + F+ +LICT +L+RG++ V+LVI Y+ + +Y
Sbjct: 329 INVDVIHAERTQQQRDNTVHSFRAGKIWVLICTALLARGIDFKGVNLVINYDFPTSSVEY 388
Query: 585 VHXXXXXXXXXXXXXALSFVMVDE 608
+H A++F D+
Sbjct: 389 IHRIGRTGRAGNKGKAITFFTEDD 412
>At5g65900 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 633
Score = 149 bits (377), Expect = 1e-35
Identities = 99/332 (29%), Positives = 165/332 (48%), Gaps = 24/332 (7%)
Query: 263 ELQFVTLTPIQCQAIPAIMSGRDVIGISKTGSGKTVAFLLP---LVRQIKAQPPLAPDET 319
E+ F +T IQ +AIP +M G DV+G ++TGSGKT+AFL+P L+ ++K P
Sbjct: 171 EMGFARMTQIQAKAIPPLMMGEDVLGAARTGSGKTLAFLIPAVELLYRVKFTP-----RN 225
Query: 320 GPIGLILTPTRELAVQIQEEALKFCKXXXXXXXXXXXXXELKQQINELKRGVDIIVATPG 379
G L++ PTRELA+Q A + K + K + L +GV+++VATPG
Sbjct: 226 GTGVLVICPTRELAIQSYGVAKELLKYHSQTVGKVIGGEKRKTEAEILAKGVNLLVATPG 285
Query: 380 RFIDLMTLNSGHLLSPTRISFVVMDEADRLFDLGFGPQVNQIMGCIRPDKQCVLFSATFP 439
R +D + +G + + F+VMDEADR+ + F + +I+ + +Q LFSAT
Sbjct: 286 RLLDHLENTNGFIFK--NLKFLVMDEADRILEQNFEEDLKKILNLLPKTRQTSLFSATQS 343
Query: 440 SKLKHFASRTLKNPIQITINS--KSLINENIQQRVQIFDEEHVKFEFL---LKRLSDRLA 494
+K++ A +L +P+ I ++ K + NE ++Q + ++ FL LKR +
Sbjct: 344 AKVEDLARVSLTSPVYIDVDEGRKEVTNEGLEQGYCVVPSA-MRLLFLLTFLKRFQGK-- 400
Query: 495 LHRGEDEKTIIFVGSQQXXXXXXXXXXXNGITTFPIHAGKPSAERLRNLQKFKETDNGIL 554
+K ++F + + I G +R +F + + GIL
Sbjct: 401 ------KKIMVFFSTCKSTKFHAELFRYIKFDCLEIRGGIDQNKRTPTFLQFIKAETGIL 454
Query: 555 ICTEVLSRGLNVPEVSLVIIYNAAKTIAQYVH 586
+CT V +RGL+ P V ++ Y+ Y+H
Sbjct: 455 LCTNVAARGLDFPHVDWIVQYDPPDNPTDYIH 486
>At3g22330 [A] KOG0331 ATP-dependent RNA helicase
Length = 620
Score = 148 bits (374), Expect = 3e-35
Identities = 104/369 (28%), Positives = 175/369 (47%), Gaps = 13/369 (3%)
Query: 248 SQLGLSSEIMDLISNELQFVTLTPIQCQAIPAIMSGRDVIGISKTGSGKTVAFLLPLVRQ 307
S+LG+S EI+ +S++ L PIQ + M GRD+IG ++TG+GKT+AF +P++ +
Sbjct: 107 SELGISPEIVKALSSK-GIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDK 165
Query: 308 IKAQPPLAPDETGPIGLILTPTRELAVQIQEEALKFCKXXXXXXXXXXXXXELKQQINEL 367
I P+ L+L PTRELA Q+++E + + QQ+ +L
Sbjct: 166 IIKYNAKHGRGRNPLCLVLAPTRELARQVEKEFRE--SAPSLDTICLYGGTPIGQQMRQL 223
Query: 368 KRGVDIIVATPGRFIDLMTLNSGHLLSPTRISFVVMDEADRLFDLGFGPQVNQIMGCIRP 427
GVD+ V TPGR IDLM + L+ + + FVV+DEAD++ +GF V I+ +
Sbjct: 224 DYGVDVAVGTPGRVIDLMKRGA---LNLSEVQFVVLDEADQMLQVGFAEDVEIILEKLPE 280
Query: 428 DKQCVLFSATFPSKLKHFASRTLKNPIQITINSKSLINENIQQRVQ-IFDEEHVKFEFLL 486
+Q ++FSAT PS ++ + L NP+ + L+ ++ Q+ I + +
Sbjct: 281 KRQSMMFSATMPSWIRSLTKKYLNNPLTV-----DLVGDSDQKLADGITTYSIIADSYGR 335
Query: 487 KRLSDRLALHRGEDEKTIIFVGSQQXXXXXXXXXXXNGITTFPIHAGKPSAERLRNLQKF 546
+ L + K I+F +++ +H ++R R L F
Sbjct: 336 ASIIGPLVTEHAKGGKCIVFTQTKR-DADRLSYALARSFKCEALHGDISQSQRERTLAGF 394
Query: 547 KETDNGILICTEVLSRGLNVPEVSLVIIYNAAKTIAQYVHXXXXXXXXXXXXXALSFVMV 606
++ IL+ T+V +RGL+VP V L+I Y +VH A+
Sbjct: 395 RDGHFNILVATDVAARGLDVPNVDLIIHYELPNNTETFVHRTGRTGRAGKKGSAILIYSQ 454
Query: 607 DELASAYIL 615
D+ + I+
Sbjct: 455 DQSRAVKII 463
>At5g05450 [A] KOG0345 ATP-dependent RNA helicase
Length = 593
Score = 147 bits (372), Expect = 5e-35
Identities = 106/379 (27%), Positives = 182/379 (47%), Gaps = 17/379 (4%)
Query: 245 TKWSQLG--LSSEIMDLISNELQFVTLTPIQCQAIPAIMSGRDVIGISKTGSGKTVAFLL 302
T++S L LS +I++ + N+ F TP+Q IP + S +DV + TGSGKT+AF++
Sbjct: 14 TRFSDLEPPLSGDIIEAL-NQSDFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVV 72
Query: 303 PLVRQIKAQPPLAPDETGPIGLILTPTRELAVQIQEEALKFCKX-XXXXXXXXXXXXELK 361
PLV ++ P +G+I++PTREL+ QI A F E+K
Sbjct: 73 PLVEILRRSTSFPPKPHQVMGVIISPTRELSTQIYNVAQPFVSTLANVNSVLLVGGREVK 132
Query: 362 QQINEL-KRGVDIIVATPGRFIDLMTLNSGHLLSPTRISFVVMDEADRLFDLGFGPQVNQ 420
+ + + G ++++ TPGR D+M +L + +++DEADRL ++GF QVN
Sbjct: 133 ADMKIIEEEGCNVLIGTPGRLSDIM--ERMEILDFRNLEILILDEADRLLEMGFQRQVNY 190
Query: 421 IMGCIRPDKQCVLFSATFPSKLKHFASRTLKNPIQITINSKSLINENIQQRVQIFDEEHV 480
I+ + ++ LFSAT ++ A L+NP+++ + +KS +E+ QQ +
Sbjct: 191 IISRLPKQRRTGLFSATQTEGVEELAKAGLRNPVRVEVRAKSK-SESSQQLTNSKTPSGL 249
Query: 481 KFEFL---LKRLSDRLA--LHRGEDEKTIIF----VGSQQXXXXXXXXXXXNGITTFPIH 531
E++ + S +L L + D+K I+F I+ PIH
Sbjct: 250 HLEYMECEADKKSSQLVDLLIKNSDKKLIVFFMTCASVDYWGLVLSKIPALKSISLIPIH 309
Query: 532 AGKPSAERLRNLQKFKETDNGILICTEVLSRGLNVPEVSLVIIYNAAKTIAQYVHXXXXX 591
R + L F + +G L+CT+V +RGL++P + V+ Y+ + + H
Sbjct: 310 GDMKQNARDKALASFTKASSGALLCTDVAARGLDIPGIDYVVQYDPPQDPNMFNHRAGRT 369
Query: 592 XXXXXXXXALSFVMVDELA 610
A+ F++ E A
Sbjct: 370 ARLGRQGRAIVFLLPKEEA 388
>At1g16280 [A] KOG0340 ATP-dependent RNA helicase
Length = 491
Score = 147 bits (371), Expect = 6e-35
Identities = 109/363 (30%), Positives = 169/363 (46%), Gaps = 17/363 (4%)
Query: 245 TKWSQLGLSSEIMDLISNELQFVTLTPIQCQAIPAIMSGRDVIGISKTGSGKTVAFLLPL 304
T + LGL+ ++ EL TP+Q +P I++GRDV+G+++TGSGKT AF LP+
Sbjct: 58 TNFEGLGLAEWAVETCK-ELGMRKPTPVQTHCVPKILAGRDVLGLAQTGSGKTAAFALPI 116
Query: 305 VRQIKAQPPLAPDETGPIGLILTPTRELAVQIQEEALKFCKXXXXXXXXXXXXXELKQQI 364
+ + LA D G L++TPTRELA Q+ E+ ++ Q
Sbjct: 117 LHR------LAEDPYGVFALVVTPTRELAFQLAEQFKALGSCLNLRCSVIVGGMDMLTQT 170
Query: 365 NELKRGVDIIVATPGRFIDLMTLNSGHLLSPTRISFVVMDEADRLFDLGFGPQVNQIMGC 424
L I++ TPGR L+ N +R F+V+DEADR+ D+GF ++ I C
Sbjct: 171 MSLVSRPHIVITTPGRIKVLLENNPDVPPVFSRTKFLVLDEADRVLDVGFQDELRTIFQC 230
Query: 425 IRPDKQCVLFSATFPSKLKHFASRTLKNPIQITINSKSLINENIQQRVQIFDEEHVKFEF 484
+ +Q +LFSAT S L+ + N + L + + IF+++ K +
Sbjct: 231 LPKSRQTLLFSATMTSNLQALLEHS-SNKAYFYEAYEGLKTVDTLTQQFIFEDKDAKELY 289
Query: 485 LLKRLSDRLALHRGEDE---KTIIFVGSQQXXXXXXXXXXXNGITTFPIHAGKPSAERLR 541
L+ LS ED+ +IFV + + + +H+ + RL
Sbjct: 290 LVHILSQM------EDKGIRSAMIFVSTCRTCQRLSLMLDELEVENIAMHSLNSQSMRLS 343
Query: 542 NLQKFKETDNGILICTEVLSRGLNVPEVSLVIIYNAAKTIAQYVHXXXXXXXXXXXXXAL 601
L KFK IL+ T+V SRGL++P V LVI Y+ + YVH A+
Sbjct: 344 ALSKFKSGKVPILLATDVASRGLDIPTVDLVINYDIPRDPRDYVHRVGRTARAGRGGLAV 403
Query: 602 SFV 604
S +
Sbjct: 404 SII 406
>CE09901 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 involved in
rRNA maturation DEAD-box superfamily
Length = 399
Score = 147 bits (370), Expect = 8e-35
Identities = 110/394 (27%), Positives = 184/394 (45%), Gaps = 22/394 (5%)
Query: 216 GLMSEKDVEELRLSLDNIKISGKDCPKPVTKWSQLGLSSEIMDLISNELQFVTLTPIQCQ 275
G +EKD + ++ + + + ++GL +++ I F + IQ +
Sbjct: 3 GKKAEKD------DMATVEFESSEEVNVIPTFDKMGLREDLLRGIY-AYGFEKPSAIQQR 55
Query: 276 AIPAIMSGRDVIGISKTGSGKTVAFLLPLVRQIKAQPPLAPDETGPIGLILTPTRELAVQ 335
A+PAI+ RDVI +++G+GKT F + +++ + Q ET LIL+PTRELAVQ
Sbjct: 56 AVPAILKARDVIAQAQSGTGKTATFSISVLQSLDTQVR----ETQ--ALILSPTRELAVQ 109
Query: 336 IQEEALKFCKXXXXXXXXXXXXXELKQQINELKRGVDIIVATPGRFIDLMTLNSGHLLSP 395
IQ+ L L + I +L G ++ TPGR D++ + L
Sbjct: 110 IQKVVLALGDYMNVQCHACIGGTNLGEDIRKLDYGQHVVSGTPGRVFDMIRRRN---LRT 166
Query: 396 TRISFVVMDEADRLFDLGFGPQVNQIMGCIRPDKQCVLFSATFPSKLKHFASRTLKNPIQ 455
I +V+DEAD + + GF Q+ I + P Q VL SAT P ++ S+ + +PI+
Sbjct: 167 RAIKLLVLDEADEMLNKGFKEQLYDIYRYLPPGAQVVLLSATLPHEILEMTSKFMTDPIR 226
Query: 456 ITINSKSLINENIQQRVQIFDEEHVKFEFLLKRLSDRLALHRGEDEKTIIFVGSQQXXXX 515
I + L E I+Q D E KF+ L+ L D L + + ++F +++
Sbjct: 227 ILVKRDELTLEGIKQFFVAVDREEWKFDTLID-LYDTLTI-----TQAVLFCNTRRKVDW 280
Query: 516 XXXXXXXNGITTFPIHAGKPSAERLRNLQKFKETDNGILICTEVLSRGLNVPEVSLVIIY 575
T +H +R +++F+ +LI T+V +RGL+VP+VSLVI Y
Sbjct: 281 LTDKMKEANFTVSSMHGDMEQKDRDEVMKEFRAGTTRVLISTDVWARGLDVPQVSLVINY 340
Query: 576 NAAKTIAQYVHXXXXXXXXXXXXXALSFVMVDEL 609
+ Y+H A++FV D++
Sbjct: 341 DLPNNRELYIHRIGRSGRFGRKGVAINFVKQDDV 374
>SPAC22F3.08c [A] KOG0344 ATP-dependent RNA helicase
Length = 481
Score = 146 bits (369), Expect = 1e-34
Identities = 113/427 (26%), Positives = 205/427 (47%), Gaps = 26/427 (6%)
Query: 218 MSEKDVEELR-LSLDNIKISGKDCPKPVTKWSQLGLSSEIMDLISNELQFVTLTPIQCQA 276
+ EK+ ++L+ ++ K++G + P+ ++ + G+ E + + T IQ A
Sbjct: 22 IKEKEAKKLQGITKGKAKVTGNNPVDPIEEFPE-GILCENL----KKQNITECTTIQRYA 76
Query: 277 IPAIMSGRDVIGISKTGSGKTVAFLLPLVRQIKAQPPLAPDETGPIGLILTPTRELAVQI 336
IP I S RD++ + TGSGKT+A+L P++++++ P G +I+ PTREL QI
Sbjct: 77 IPTIGSKRDLLACAPTGSGKTIAYLFPILQKLQLHVP-----GGYRAIIVAPTRELCEQI 131
Query: 337 QEEALKFCKXXXXXXXXXXXXXE-LKQQINELKRGVDIIVATPGRFIDLMTLNSGHLLSP 395
+A K E ++++ +L+ D+ + TP R + + LS
Sbjct: 132 YRQAEKLSFGTSLKIIELSKSNEKIQEKAPKLREKYDMCIGTPMRLVQAIQTG----LSF 187
Query: 396 TRISFVVMDEADRLFDLGFGPQVNQIMGCIRPDKQCV-LFSATFPSKLKHFASRTLKNPI 454
++ F VMDEADRLF+ GF Q + I+ C LFSAT PS+++ A +PI
Sbjct: 188 EKVEFFVMDEADRLFEPGFIEQTDHILSACTSSNICKSLFSATIPSRVEELAKVVTVDPI 247
Query: 455 QITINSKSLINENIQQRVQIFDEEHVKFEFLLKRLSDRLALHRGE-DEKTIIFVGSQQXX 513
+I + K ++I QR+ + K L + +S+ GE + +IFV +
Sbjct: 248 RIIVGLKDAATDSIDQRLLFVGSDTSKIVILRQMISN------GELKPRVVIFVQDIERA 301
Query: 514 XXXXXXXXXNGITTFPIHAGKPSAERLRNLQKFKETDNGILICTEVLSRGLNVPEVSLVI 573
+ I IH P A+R L KF++ + +LI T++L+RG++ V +VI
Sbjct: 302 KALYTELLFDEIHVGVIHGELPQAKREEALAKFRKGEIWVLIATDLLARGIDFHGVKMVI 361
Query: 574 IYNAAKTIAQYVHXXXXXXXXXXXXXALSFVMVDELASAYILVKCMKEN--ELSSVPMVV 631
++ +++ Y+H A++F ++ ++ M+ + E+ + M +
Sbjct: 362 NFDFPQSVHSYIHRIGRTGRAGNTGQAVTFFTKEDGEYIKLIAGVMRSSGCEVPNWVMAL 421
Query: 632 YQKLKEM 638
+ KEM
Sbjct: 422 PKPSKEM 428
>SPAC1F5.10 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 involved in
rRNA maturation DEAD-box superfamily
Length = 394
Score = 146 bits (369), Expect = 1e-34
Identities = 102/380 (26%), Positives = 182/380 (47%), Gaps = 16/380 (4%)
Query: 230 LDNIKISGKDCPKPVTKWSQLGLSSEIMDLISNELQFVTLTPIQCQAIPAIMSGRDVIGI 289
++N++++ + V+ + ++ L +++ I + T + +Q +AI I GRDVI
Sbjct: 6 MENVELTTSEDVNAVSSFEEMNLKEDLLRGIY-AYGYETPSAVQSRAIIQICKGRDVIAQ 64
Query: 290 SKTGSGKTVAFLLPLVRQIKAQPPLAPDETGPIGLILTPTRELAVQIQEEALKFCKXXXX 349
+++G+GKT F + +++ I L+ +T LIL+PTRELAVQIQ L
Sbjct: 65 AQSGTGKTATFSIGILQSID----LSVRDTQ--ALILSPTRELAVQIQNVVLALGDHMNV 118
Query: 350 XXXXXXXXXELKQQINELKRGVDIIVATPGRFIDLMTLNSGHLLSPTRISFVVMDEADRL 409
+ I +L G ++ TPGR D++ + L + +++DEAD L
Sbjct: 119 QCHACIGGTSVGNDIKKLDYGQHVVSGTPGRVTDMIRRRN---LRTRNVKMLILDEADEL 175
Query: 410 FDLGFGPQVNQIMGCIRPDKQCVLFSATFPSKLKHFASRTLKNPIQITINSKSLINENIQ 469
+ GF Q+ I + P Q V+ SAT P + ++ NP++I + L E ++
Sbjct: 176 LNQGFKEQIYDIYRYLPPGTQVVVVSATLPQDVLEMTNKFTTNPVRILVKRDELTLEGLK 235
Query: 470 QRVQIFDEEHVKFEFLLKRLSDRLALHRGEDEKTIIFVGSQQXXXXXXXXXXXNGITTFP 529
Q ++E KF+ L L D L + + +IF S++ T
Sbjct: 236 QYFIAVEKEEWKFDTLCD-LYDTLTI-----TQAVIFCNSRRKVDWLTEKMREANFTVTS 289
Query: 530 IHAGKPSAERLRNLQKFKETDNGILICTEVLSRGLNVPEVSLVIIYNAAKTIAQYVHXXX 589
+H P ER +Q F++ ++ +LICT++ +RG++V +VSLVI Y+ Y+H
Sbjct: 290 MHGEMPQKERDAIMQDFRQGNSRVLICTDIWARGIDVQQVSLVINYDLPANRENYIHRIG 349
Query: 590 XXXXXXXXXXALSFVMVDEL 609
A++FV +++
Sbjct: 350 RSGRFGRKGVAINFVTNEDV 369
>At3g22310 [A] KOG0331 ATP-dependent RNA helicase
Length = 610
Score = 146 bits (369), Expect = 1e-34
Identities = 108/382 (28%), Positives = 180/382 (46%), Gaps = 13/382 (3%)
Query: 248 SQLGLSSEIMDLISNELQFVTLTPIQCQAIPAIMSGRDVIGISKTGSGKTVAFLLPLVRQ 307
+ LG+S EI+ + L PIQ + M GRD+IG ++TG+GKT+AF +P++ +
Sbjct: 119 ADLGISPEIVKALKGR-GIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDK 177
Query: 308 IKAQPPLAPDETGPIGLILTPTRELAVQIQEEALKFCKXXXXXXXXXXXXXELKQQINEL 367
I P L+L PTRELA Q+++E + + QQ+ EL
Sbjct: 178 IIKFNAKHGRGKNPQCLVLAPTRELARQVEKEFRE--SAPSLDTICLYGGTPIGQQMREL 235
Query: 368 KRGVDIIVATPGRFIDLMTLNSGHLLSPTRISFVVMDEADRLFDLGFGPQVNQIMGCIRP 427
G+D+ V TPGR IDLM + L+ + + FVV+DEAD++ +GF V I+ +
Sbjct: 236 NYGIDVAVGTPGRIIDLMKRGA---LNLSEVQFVVLDEADQMLQVGFAEDVEIILQKLPA 292
Query: 428 DKQCVLFSATFPSKLKHFASRTLKNPIQITINSKSLINENIQQRVQIFDEEHVKFEFLLK 487
+Q ++FSAT PS ++ + L NP+ I + S ++ + + ++ +
Sbjct: 293 KRQSMMFSATMPSWIRSLTKKYLNNPLTIDLVGDS--DQKLADGITMY--SIAADSYGRA 348
Query: 488 RLSDRLALHRGEDEKTIIFVGSQQXXXXXXXXXXXNGITTFPIHAGKPSAERLRNLQKFK 547
+ L G+ K I+F +++ +H A+R R L F+
Sbjct: 349 SIIGPLVKEHGKGGKCIVFTQTKR-DADRLAFGLAKSYKCEALHGDISQAQRERTLAGFR 407
Query: 548 ETDNGILICTEVLSRGLNVPEVSLVIIYNAAKTIAQYVHXXXXXXXXXXXXXALSFVMVD 607
+ + IL+ T+V +RGL+VP V LVI Y +VH A+ D
Sbjct: 408 DGNFSILVATDVAARGLDVPNVDLVIHYELPNNTETFVHRTGRTGRAGKKGSAILIHGQD 467
Query: 608 ELASAYILVKCM--KENELSSV 627
+ + ++ K + + NEL S+
Sbjct: 468 QTRAVKMIEKEVGSRFNELPSI 489
>At3g09720 [A] KOG0344 ATP-dependent RNA helicase
Length = 545
Score = 146 bits (368), Expect = 1e-34
Identities = 115/460 (25%), Positives = 210/460 (45%), Gaps = 26/460 (5%)
Query: 202 ITLNKCLYREPNDLGLMSEKDVEELRLSLDNIKISGKDCPKPVTKWSQL----GLSSEIM 257
IT N+ + +L E+D L +I +SG + P P+ +++L G I+
Sbjct: 96 ITKNEIVENPKKELNRQMERDA--LSRKQYSIHVSGNNIPPPLKSFAELSSRYGCEGYIL 153
Query: 258 DLISNELQFVTLTPIQCQAIPAIMSGRDVIGISKTGSGKTVAFLLPLVRQIKAQPPLAPD 317
++ EL F TPIQ QAIP ++SGR+ + TGSGKT AF+ P++ ++K P
Sbjct: 154 RNLA-ELGFKEPTPIQRQAIPILLSGRECFACAPTGSGKTFAFICPMLIKLKVL-NCRPS 211
Query: 318 ETGPIGLILTPTRELAVQIQEEALKFCKXXXXXXXXXXXXXELKQQINELKRGVDIIVAT 377
G +IL+P RELA Q E K K L + + K D++++T
Sbjct: 212 TDGIRAVILSPARELAAQTAREGKKLIK--GSNFHIRLMTKPLVKTADFSKLWCDVLIST 269
Query: 378 PGRFIDLMTLNSGHLLSPTRISFVVMDEADRLFDLGFGPQVNQIM-GCIRPDKQCVLFSA 436
P R L + +++ ++V+DE+D+LF+ Q++ ++ C P LFSA
Sbjct: 270 PMR---LKRAIKAKKIDLSKVEYLVLDESDKLFEQSLLKQIDCVVKACSNPSIIRSLFSA 326
Query: 437 TFPSKLKHFASRTLKNPIQITINSKSLINENIQQRVQIFDEEHVKFEFLLKRLSDRLALH 496
T P ++ A + + +++ I K+ +E ++Q++ E K L + ++ L
Sbjct: 327 TLPDSVEELARSIMHDAVRVIIGRKNTASETVKQKLVFAGSEEGKLLALRQSFAESL--- 383
Query: 497 RGEDEKTIIFVGSQQXXXXXXXXXXXNGITTFPIHAGKPSAERLRNLQKFKETDNGILIC 556
+ +IFV S++ I IH+ P ER + +F+ + +LI
Sbjct: 384 ---NPPVLIFVQSKERAKELYDELKCENIRAGVIHSDLPPGERENAVDQFRAGEKWVLIA 440
Query: 557 TEVLSRGLNVPEVSLVIIYNAAKTIAQYVHXXXXXXXXXXXXXALSFV------MVDELA 610
T+V++RG++ ++ VI Y+ + + Y+H A++F + +A
Sbjct: 441 TDVIARGMDFKGINCVINYDFPDSASAYIHRIGRSGRAGRSGEAITFYTEQDVPFLRNIA 500
Query: 611 SAYILVKCMKENELSSVPMVVYQKLKEMNDEFSSGLKTGK 650
+ + C + + S+ ++K + D S+ K K
Sbjct: 501 NTMMSSGCEVPSWIMSLKKKKWRKHRPRRDSISTKPKADK 540
>At3g19760 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 involved in
rRNA maturation DEAD-box superfamily
Length = 408
Score = 145 bits (366), Expect = 2e-34
Identities = 99/379 (26%), Positives = 175/379 (46%), Gaps = 16/379 (4%)
Query: 231 DNIKISGKDCPKPVTKWSQLGLSSEIMDLISNELQFVTLTPIQCQAIPAIMSGRDVIGIS 290
D + D +P+T ++ +G+ +++ + E F + IQ +A+ I+ GRDVI +
Sbjct: 21 DKLVFETTDGIEPITSFNDMGIKEDVLRGVY-EYGFEKPSAIQQRAVMPILQGRDVIAQA 79
Query: 291 KTGSGKTVAFLLPLVRQIKAQPPLAPDETGPIGLILTPTRELAVQIQEEALKFCKXXXXX 350
++G+GKT L + + + LIL+PTRELA Q ++
Sbjct: 80 QSGTGKTSMIALSVCQVVDTSSREVQ------ALILSPTRELATQTEKTIQAIGLHANIQ 133
Query: 351 XXXXXXXXELKQQINELKRGVDIIVATPGRFIDLMTLNSGHLLSPTRISFVVMDEADRLF 410
+ + I +L+ GV ++ TPGR D++ S L I +++DE+D +
Sbjct: 134 AHACIGGNSVGEDIRKLEHGVHVVSGTPGRVCDMIKRRS---LRTRAIKLLILDESDEML 190
Query: 411 DLGFGPQVNQIMGCIRPDKQCVLFSATFPSKLKHFASRTLKNPIQITINSKSLINENIQQ 470
GF Q+ + + PD Q L SAT P ++ S+ + P++I + L E I+Q
Sbjct: 191 SRGFKDQIYDVYRYLPPDLQVCLVSATLPHEILEMTSKFMTEPVKILVKRDELTLEGIKQ 250
Query: 471 RVQIFDEEHVKFEFLLKRLSDRLALHRGEDEKTIIFVGSQQXXXXXXXXXXXNGITTFPI 530
++E KF+ L L D L + + +IF +++ + T +
Sbjct: 251 FFVAVEKEEWKFDTLCD-LYDTLTI-----TQAVIFCNTKRKVDYLSEKMRSHNFTVSSM 304
Query: 531 HAGKPSAERLRNLQKFKETDNGILICTEVLSRGLNVPEVSLVIIYNAAKTIAQYVHXXXX 590
H P ER + +F+ D+ +LI T+V +RG++V +VSLVI Y+ Y+H
Sbjct: 305 HGDMPQKERDAIMNEFRSGDSRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGR 364
Query: 591 XXXXXXXXXALSFVMVDEL 609
A++FV D++
Sbjct: 365 SGRFGRKGVAINFVKSDDI 383
>At5g08610 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 827
Score = 145 bits (365), Expect = 3e-34
Identities = 109/373 (29%), Positives = 176/373 (46%), Gaps = 9/373 (2%)
Query: 219 SEKDVEELRLSLDNIKISGKDCPKPVTKWSQLGLSSEIMDLISNELQFVTLTPIQCQAIP 278
S K V+ + + +++K S K T++ Q LS + I + F T+T +Q +P
Sbjct: 335 SAKAVQTDKPTGEHVKTSDSYLSK--TRFDQFPLSPLSLKAIK-DAGFETMTVVQEATLP 391
Query: 279 AIMSGRDVIGISKTGSGKTVAFLLPLVRQIKAQPPLAPDETGP--IGLILTPTRELAVQI 336
I+ G+DV+ +KTG+GKTVAFLLP + + PP + D P I L++ PTRELA Q
Sbjct: 392 IILQGKDVLAKAKTGTGKTVAFLLPAIEAVIKSPPASRDSRQPPIIVLVVCPTRELASQA 451
Query: 337 QEEA---LKFCKXXXXXXXXXXXXXELKQQINELKRGVDIIVATPGRFIDLMTLNSGHLL 393
EA LK+ +Q+ + I+VATPGR D + SG
Sbjct: 452 AAEANTLLKYHPSIGVQVVIGGTKLPTEQRRMQTNP-CQILVATPGRLKDHIENTSGFAT 510
Query: 394 SPTRISFVVMDEADRLFDLGFGPQVNQIMGCIRPDKQCVLFSATFPSKLKHFASRTLKNP 453
+ +V+DEAD L D+GF + +I+ + +Q LFSAT P +++ LK
Sbjct: 511 RLMGVKVLVLDEADHLLDMGFRRDIERIIAAVPKQRQTFLFSATVPEEVRQICHVALKRD 570
Query: 454 IQITINSKSLINENIQQRVQIFDEEHVKFEFLLKRLSDRLALHRGEDEKTIIFVGSQQXX 513
+ + E Q+ Q++ + F L + + + D K IIF +
Sbjct: 571 HEFINCVQEGSGETHQKVTQMYMIASLDRHFSLLHVLLKEHIADNVDYKVIIFCTTAMVT 630
Query: 514 XXXXXXXXXNGITTFPIHAGKPSAERLRNLQKFKETDNGILICTEVLSRGLNVPEVSLVI 573
+ IH+ KP + R R +F+++ IL+ ++V +RG++ P+VSLV+
Sbjct: 631 RLVADLLSQLSLNVREIHSRKPQSYRTRVSDEFRKSKAIILVTSDVSARGVDYPDVSLVV 690
Query: 574 IYNAAKTIAQYVH 586
QY+H
Sbjct: 691 QMGLPSDREQYIH 703
>Hs7661920 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 involved in
rRNA maturation DEAD-box superfamily
Length = 411
Score = 144 bits (364), Expect = 4e-34
Identities = 102/338 (30%), Positives = 162/338 (47%), Gaps = 15/338 (4%)
Query: 272 IQCQAIPAIMSGRDVIGISKTGSGKTVAFLLPLVRQIKAQPPLAPDETGPIGLILTPTRE 331
IQ +AI I+ GRDVI S++G+GKT F + +++ + Q ET LIL PTRE
Sbjct: 64 IQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQVR----ETQ--ALILAPTRE 117
Query: 332 LAVQIQEEALKFCKXXXXXXXXXXXXXELKQQINELKRGVDIIVATPGRFIDLMTLNSGH 391
LAVQIQ+ L + + I +L G ++ TPGR D++ S
Sbjct: 118 LAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRS-- 175
Query: 392 LLSPTRISFVVMDEADRLFDLGFGPQVNQIMGCIRPDKQCVLFSATFPSKLKHFASRTLK 451
L I +V+DEAD + + GF Q+ + + P Q VL SAT P ++ ++ +
Sbjct: 176 -LRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMT 234
Query: 452 NPIQITINSKSLINENIQQRVQIFDEEHVKFEFLLKRLSDRLALHRGEDEKTIIFVGSQQ 511
+PI+I + L E I+Q + E KF+ L L D L + + +IF +++
Sbjct: 235 DPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCD-LYDTLTI-----TQAVIFCNTKR 288
Query: 512 XXXXXXXXXXXNGITTFPIHAGKPSAERLRNLQKFKETDNGILICTEVLSRGLNVPEVSL 571
T +H P ER +++F+ + +LI T+V +RGL+VP+VSL
Sbjct: 289 KVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSL 348
Query: 572 VIIYNAAKTIAQYVHXXXXXXXXXXXXXALSFVMVDEL 609
+I Y+ Y+H A++FV D++
Sbjct: 349 IINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDI 386
>SPBC543.06c [A] KOG0340 ATP-dependent RNA helicase
Length = 453
Score = 144 bits (363), Expect = 5e-34
Identities = 116/420 (27%), Positives = 193/420 (45%), Gaps = 20/420 (4%)
Query: 247 WSQLGLSSEIMDLISNELQFVTLTPIQCQAIPAIMSGRDVIGISKTGSGKTVAFLLPLVR 306
+S LG+S ++D + L T IQ I I+ GR+ IG +KTGSGKT AF LP++
Sbjct: 9 FSDLGISPWLIDTLK-ALAIYEPTDIQEGVIAQILEGRNCIGGAKTGSGKTAAFALPIIE 67
Query: 307 QIKAQPPLAPDETGPIGLILTPTRELAVQIQEEALKFCKXXXXXXXXXXXXXELKQQINE 366
+ P +G LILTPTRELA+QI E+ ++ +Q +
Sbjct: 68 KWSKDP------SGIFALILTPTRELAIQIDEQFAALGANLNLKHALIVGGMDMIRQSID 121
Query: 367 LKRGVDIIVATPGRFIDLMTLNSGHLLSPTR-ISFVVMDEADRLFDLGFGPQVNQIMGCI 425
L + ++VATPGR DL+ N ++ R I F+VMDEADRL F ++ +
Sbjct: 122 LSKRPHVVVATPGRLADLIRSNGEETIAGLRRIKFLVMDEADRLLSPTFADDLDDCFSVL 181
Query: 426 --RPDKQCVLFSATFPS---KLKHFASRTLKNPIQI-TINSKSLINENIQQRVQIFDEEH 479
D+Q +LF+AT +LK+ + K P+ + + + ++ + Q+ IF
Sbjct: 182 PASEDRQTLLFTATVTDAIRQLKYQPQKNNKPPLWLYEVETDNISVPSTLQQSYIFVSSQ 241
Query: 480 VKFEFLLKRLSDRLALHRGEDEKTIIFVGSQQXXXXXXXXXXXNGITTFPIHAGKPSAER 539
V+ +L+ L+ + + IIFV + + +H+ ER
Sbjct: 242 VREAYLVHLLT----IPENAKKSAIIFVNRTRTAELIYSILRLLELRVTELHSEMVQRER 297
Query: 540 LRNLQKFKETDNGILICTEVLSRGLNVPEVSLVIIYNAAKTIAQYVHXXXXXXXXXXXXX 599
+ +L +F+ IL+ T+V SRGL++P V LVI ++ + Y+H
Sbjct: 298 INSLGRFRAEAAKILVATDVASRGLDIPSVQLVINFDLPRDPDDYIHRVGRTARAGRSGE 357
Query: 600 ALSFVMVDELASAYILVKCMKENELSSVPMVVYQKLKEMNDEFSSGLKTGKYRLI-QGFG 658
++S V ++ + ++ +LS V K+ E E + + +I +GFG
Sbjct: 358 SISIVTERDVDLVH-AIEDRVGTKLSEYEHVSENKMLEYIKEVTDAKRQASLEMIDRGFG 416
>ECU02g0670 [A] KOG0335 ATP-dependent RNA helicase
Length = 503
Score = 144 bits (363), Expect = 5e-34
Identities = 124/435 (28%), Positives = 208/435 (47%), Gaps = 40/435 (9%)
Query: 221 KDVEELRLSLDNIKISGKDCPKPVTKWSQLGLSSEIMDLISNELQFVTLTPIQCQAIPAI 280
KD + + + +IK+ + K ++ + L S ++ + E T+ IQ IP++
Sbjct: 75 KDPDSVAAADGDIKVVTSEKVKTLSSFKDL-CSPLLIKALGKEYSAPTI--IQKYCIPSL 131
Query: 281 MSGRDVIGISKTGSGKTVAFLLPLV---RQIKAQPPLAPDETGPIGLILTPTRELAVQIQ 337
+ GR++I + TG GKT+ FL+P++ RQ+K P I++PTREL QI+
Sbjct: 132 VDGRNLICRAPTGMGKTMCFLIPIIERHRQMKK----------PQACIISPTRELCEQIR 181
Query: 338 EEALKFCKXXXXXXXXXXXXXELKQQINELKRGVDIIVATPGRFIDLMTLNSGHLLSPTR 397
EA K K+Q GVDI+VATPGR IDL+ L +
Sbjct: 182 VEASKLVAGSRIRVVSIYG----KKQDLPSYSGVDIVVATPGRLIDLLHRKKVDL---SE 234
Query: 398 ISFVVMDEADRLFDLGFGPQVNQIMGCIRPDKQCVLFSATFPSKLKHFASRTL-KNPIQI 456
I V+DEAD+L D+GF + +I G + + Q LFSAT+ KL + L ++ + I
Sbjct: 235 IRMFVLDEADKLLDMGFEIPIREIHGFVPKNTQTCLFSATYSPKLTRMINYFLPEDKVSI 294
Query: 457 TINSKSLINENIQQRVQIFDEEHVKFEFLLKRLSDRLALHRG------EDEKTIIFVGSQ 510
I+S++L +NI+Q + E K + LL L +G + +K ++FV +
Sbjct: 295 EISSETL--KNIRQEIV---EVRNKKKMLLNILKGPDINLKGSWRMEVQPDKVLVFVERK 349
Query: 511 QXXXXXXXXXXXNGITTFPIHAGKPSAERLRNLQKFKETDNGILICTEVLSRGLNVPEVS 570
+GI +H K A+R L+ F+ +++ T V +RG+++ +V
Sbjct: 350 SECGEVEKVLKKSGILCVSLHGDKEQADRDEALKGFRNGRFPVMVATSVAARGIDIKDVK 409
Query: 571 LVIIYNAAKTIAQYVHXXXXXXXXXXXXXALSFV---MVDELASAYILVKCMKENELSSV 627
LVI Y+ K I +Y+H ++SF M +L A LV+ ++E++ +
Sbjct: 410 LVINYDIPKDIKEYIHRIGRTGREGKSGKSISFYDGGMTADLKKA--LVEVLRESKNAVP 467
Query: 628 PMVVYQKLKEMNDEF 642
P + ++ N F
Sbjct: 468 PFLTGASDEDFNARF 482
>At5g60990 [A] KOG0330 ATP-dependent RNA helicase
Length = 454
Score = 143 bits (361), Expect = 9e-34
Identities = 120/423 (28%), Positives = 195/423 (45%), Gaps = 33/423 (7%)
Query: 244 VTKWSQLGLSSEIMDLISNELQFVTLTPIQCQAIPAIMSGRDVIGISKTGSGKTVAFLLP 303
V +++LG+ E++ L + + IQ +A+P + G+DVIG+++TGSGKT AF +P
Sbjct: 8 VKTFAELGVREELVKACER-LGWKNPSKIQAEALPFALEGKDVIGLAQTGSGKTGAFAIP 66
Query: 304 LVRQI-------KAQPPLAPDETGPIGLILTPTRELAVQIQEEALKFCKXXXXXXXXXXX 356
+++ + + + PD +L+PTRELA+QI E+
Sbjct: 67 ILQALLEYVYDSEPKKGRRPDPAF-FACVLSPTRELAIQIAEQFEALGADISLRCAVLVG 125
Query: 357 XXELKQQINELKRGVDIIVATPGRFIDLMTLNSGHLLSPTRISFVVMDEADRLFDLGFGP 416
+ QQ L G VATPGR D M+ G L + ++V+DEADRL + F
Sbjct: 126 GIDRMQQTIAL--GKRPHVATPGRLWDHMSDTKGFSLKS--LKYLVLDEADRLLNEDFEK 181
Query: 417 QVNQIMGCIRPDKQCVLFSATFPSKLKHFASRTLKNPIQITINSKSLINENIQQRVQIFD 476
+NQI+ I +++ LFSAT K++ L+NP++I SK + ++Q+ +
Sbjct: 182 SLNQILEEIPLERKTFLFSATMTKKVRKLQRACLRNPVKIEAASKYSTVDTLKQQYRFVA 241
Query: 477 EEHVKFEFLLKRLSDRLALHRGEDEKTIIFVGSQQXXXXXXXXXXXNGITTFPIHAGKPS 536
++ K +L+ LS+ + ++IF + G PI
Sbjct: 242 AKY-KDCYLVYILSEM------PESTSMIFTRTCDGTRFLALVLRSLGFRAIPISGQMTQ 294
Query: 537 AERLRNLQKFKETDNGILICTEVLSRGLNVPEVSLVIIYNAAKTIAQYVHXXXXXXXXXX 596
++RL L KFK + IL+CT+V SRGL++P V +VI Y+ Y+H
Sbjct: 295 SKRLGALNKFKAGECNILVCTDVASRGLDIPSVDVVINYDIPTNSKDYIHRVGRTARAGR 354
Query: 597 XXXALSFVMVDELASAYILVKCMKENELSSVP------------MVVYQKLKEMNDEFSS 644
+S V EL YI ++ + +L P + +KL MN + S
Sbjct: 355 SGVGISLVNQYEL-EWYIQIEKLIGKKLPEYPAEEDEVLSLLERVAEAKKLSAMNMKESG 413
Query: 645 GLK 647
G K
Sbjct: 414 GRK 416
>YDL160c [A] KOG0326 ATP-dependent RNA helicase
Length = 506
Score = 142 bits (358), Expect = 2e-33
Identities = 104/373 (27%), Positives = 176/373 (46%), Gaps = 18/373 (4%)
Query: 263 ELQFVTLTPIQCQAIPAIMSGRDVIGISKTGSGKTVAFLLPLVRQIKAQPPLAPDETGPI 322
E F +PIQ +AIP ++GRD++ +K G+GKT AF++P + ++K P
Sbjct: 63 EAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVK------PKLNKIQ 116
Query: 323 GLILTPTRELAVQIQEEALKFCKXXXXXXXXXXXXXELKQQINELKRGVDIIVATPGRFI 382
LI+ PTRELA+Q + K L+ I L V I+V TPGR +
Sbjct: 117 ALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVL 176
Query: 383 DLMTLNSGHLLSPTRISFVVMDEADRLFDLGFGPQVNQIMGCIRPDKQCVLFSATFPSKL 442
DL + L + S +MDEAD++ F + QI+ + P Q +LFSATFP +
Sbjct: 177 DLASRKVADL---SDCSLFIMDEADKMLSRDFKTIIEQILSFLPPTHQSLLFSATFPLTV 233
Query: 443 KHFASRTLKNPIQITINSKSLINENIQQRVQIFDEEHVKFEFLLKRLSDRLALHRGEDEK 502
K F + L P +I + + L + I Q F EE K L L +L ++ +
Sbjct: 234 KEFMVKHLHKPYEINL-MEELTLKGITQ-YYAFVEERQKLH-CLNTLFSKLQIN-----Q 285
Query: 503 TIIFVGSQQXXXXXXXXXXXNGITTFPIHAGKPSAERLRNLQKFKETDNGILICTEVLSR 562
IIF S G + + HA ER + +F++ L+C+++L+R
Sbjct: 286 AIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTR 345
Query: 563 GLNVPEVSLVIIYNAAKTIAQYVHXXXXXXXXXXXXXALSFVMVDELASAYILVKCMKEN 622
G+++ V++VI ++ KT Y+H A++ + ++ + Y + + +
Sbjct: 346 GIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLINWNDRFNLYKIEQEL-GT 404
Query: 623 ELSSVPMVVYQKL 635
E++++P + + L
Sbjct: 405 EIAAIPATIDKSL 417
>ECU09g1640 [A] KOG0326 ATP-dependent RNA helicase
Length = 489
Score = 142 bits (358), Expect = 2e-33
Identities = 97/363 (26%), Positives = 177/363 (48%), Gaps = 20/363 (5%)
Query: 247 WSQLGLSSEIMDLISNELQFVTLTPIQCQAIPAIMSGRDVIGISKTGSGKTVAFLLPLVR 306
W LGL ++ I ++ + +P+Q +IP ++ G++++ SK G+GKT ++++P++
Sbjct: 110 WESLGLGPVLLKRI-RDIGYDFPSPVQVASIPHVLGGKNLLVRSKNGTGKTASYIVPMLN 168
Query: 307 QIKAQPPLAPDETGPIGLILTPTRELAVQIQEEALKFCKXXXXXXXXXXXXXELKQQINE 366
I + E G+IL P RELA+QI + + ++ I
Sbjct: 169 MINSS------ELSIQGIILVPIRELALQISRNVKRMSEGTGVISAPVVGGTSMQDDIIR 222
Query: 367 LKRGVDIIVATPGRFIDLMTLNSGHLLSPTRISFVVMDEADRLFDLGFGPQVNQIMGCIR 426
+ GV ++V TPGR +DL+ G L ++ +V DEAD+L D+ FG V +++ +
Sbjct: 223 VSNGVHVMVGTPGRIVDLVEKRVGTL---SKRVILVFDEADKLLDVTFGETVTKLLDLLP 279
Query: 427 PDKQCVLFSATFPSKLKHFASRTLKNPIQITINSKSLINENIQQ-RVQIFDEEHVKFEFL 485
+KQ +L+SATFP + F R +KNP+ I + K L ++Q + E +
Sbjct: 280 REKQMLLYSATFPYFVTGFIRRYMKNPLCINL-MKELAPVGVKQFYTYVKPSEKL---LC 335
Query: 486 LKRLSDRLALHRGEDEKTIIFVGSQQXXXXXXXXXXXNGITTFPIHAGKPSAERLRNLQK 545
LK L RL+++ + +IF S + G+ ++ IH+ +R
Sbjct: 336 LKSLLLRLSIN-----QCVIFCNSIKTVELLAMKITEMGLPSYFIHSKMAQEDRNIVFHN 390
Query: 546 FKETDNGILICTEVLSRGLNVPEVSLVIIYNAAKTIAQYVHXXXXXXXXXXXXXALSFVM 605
F + IL+ T++++RG++ P + VI ++ +K+ Y+H A+S V
Sbjct: 391 FLKGKCKILVATDLITRGVDAPNTNYVINFDISKSPESYLHRIGRAGRFGAPGVAISLVT 450
Query: 606 VDE 608
+E
Sbjct: 451 TEE 453
>CE26853 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 544
Score = 142 bits (358), Expect = 2e-33
Identities = 93/329 (28%), Positives = 163/329 (49%), Gaps = 20/329 (6%)
Query: 264 LQFVTLTPIQCQAIPAIMSGRDVIGISKTGSGKTVAFLLPLVRQIKAQPPLAPDETGPIG 323
L F T+T IQ ++I ++ G+DV+ +KTGSGKT+AFLLP + + + TG I
Sbjct: 86 LGFTTMTEIQAKSIDPLLEGKDVLASAKTGSGKTLAFLLPAIELLHKLNWKQHNGTGVI- 144
Query: 324 LILTPTRELAVQIQEEALKFCKXXXXXXXXXXXXXELKQQINELKRGVDIIVATPGRFID 383
I++PTREL++Q + + + ++L +GV I+VATPGR +D
Sbjct: 145 -IVSPTRELSMQTYGVLSELLEGSNLTYGLVMGGSNRSAEKDKLAKGVSILVATPGRLLD 203
Query: 384 LMTLNSGHLLSPTRISFVVMDEADRLFDLGFGPQVNQIMGCIRPDKQCVLFSATFPSKLK 443
+ L+ + +++DEADR+ D+GF ++ Q++ + +Q +LFSAT K+
Sbjct: 204 HLQNTDNFLV--RNMKCLIIDEADRILDIGFEIEMQQVLRHLPKQRQSMLFSATHSPKVD 261
Query: 444 HFASRTL-KNPIQITINSKS--LINENIQQRVQIFDEEH---VKFEFLLKRLSDRLALHR 497
L NP++++++ K+ E +QQ + + + F FL K
Sbjct: 262 ELVKLALHSNPVRVSVHEKAEEATVEGLQQGYIVAPSDKRLLLLFTFLKK---------- 311
Query: 498 GEDEKTIIFVGSQQXXXXXXXXXXXNGITTFPIHAGKPSAERLRNLQKFKETDNGILICT 557
+ +K ++F S I IH + +R +F + + GIL+CT
Sbjct: 312 NKTKKVMVFFSSCNSVKFHHELLNYIDIPCMSIHGKQKQQKRTTTFFQFCQAETGILLCT 371
Query: 558 EVLSRGLNVPEVSLVIIYNAAKTIAQYVH 586
+V +RGL++P V ++ Y+ +Y+H
Sbjct: 372 DVAARGLDIPAVDWIVQYDPTDEPREYIH 400
>At5g63630 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 522
Score = 142 bits (358), Expect = 2e-33
Identities = 108/386 (27%), Positives = 175/386 (44%), Gaps = 12/386 (3%)
Query: 211 EPNDLGLMSEKDVEELRLSLDNIKISGK-----DCPKPVTKWSQLGLSSEIMDLISNELQ 265
E D + +K V +N+ + K D T++ LS + I +
Sbjct: 15 EDQDYDFLKKKAVSAFGFDKENVIEADKTRNANDSYLTKTRFDHYPLSPLSLKAIK-DAG 73
Query: 266 FVTLTPIQCQAIPAIMSGRDVIGISKTGSGKTVAFLLPLVRQIKAQPPLAPDETGP--IG 323
+ T+T +Q +P I+ G+DV+ +KTG+GKTVAFLLP + + PP +PD P +
Sbjct: 74 YETMTVVQEATLPIILKGKDVLAKAKTGTGKTVAFLLPSIEVVVKSPPTSPDNKRPPILA 133
Query: 324 LILTPTRELAVQIQEEA---LKFCKXXXXXXXXXXXXXELKQQINELKRGVDIIVATPGR 380
L++ PTRELA Q EA LK+ L+Q+ + I+VATPGR
Sbjct: 134 LVICPTRELANQAATEANTLLKYHPSIGVQVVIGGTRLGLEQKRMQ-TNPCQILVATPGR 192
Query: 381 FIDLMTLNSGHLLSPTRISFVVMDEADRLFDLGFGPQVNQIMGCIRPDKQCVLFSATFPS 440
D + G + +V+DEAD L D+GF + +I+ + ++Q LFSAT P
Sbjct: 193 LKDHIENTPGFATRLKGVKVLVLDEADHLLDMGFRKDIERIISAVPKERQTFLFSATVPE 252
Query: 441 KLKHFASRTLKNPIQITINSKSLINENIQQRVQIFDEEHVKFEFLLKRLSDRLALHRGED 500
+++ L+ + E QQ Q+ + F L R + D
Sbjct: 253 EVRQICLVALRRDHEFVNCVHEGTIETHQQVRQMHMIASLDRHFSLLYTLLREHIMGNVD 312
Query: 501 EKTIIFVGSQQXXXXXXXXXXXNGITTFPIHAGKPSAERLRNLQKFKETDNGILICTEVL 560
K I+F + + IH+ KP + R R +F+++ IL+ ++V
Sbjct: 313 YKVIVFCTTAMVTKLVADLLGELNLNVREIHSRKPQSYRTRVSNEFRKSKGLILVTSDVS 372
Query: 561 SRGLNVPEVSLVIIYNAAKTIAQYVH 586
+RG++ P+V+LV+ K QY+H
Sbjct: 373 ARGVDYPDVTLVLQVGLPKDREQYIH 398
>CE01341 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 402
Score = 141 bits (356), Expect = 4e-33
Identities = 93/333 (27%), Positives = 161/333 (47%), Gaps = 15/333 (4%)
Query: 272 IQCQAIPAIMSGRDVIGISKTGSGKTVAFLLPLVRQIKAQPPLAPDETGPIGLILTPTRE 331
IQ +AI +G+DVI +++G+GKT F + ++++I + P L++ PTRE
Sbjct: 55 IQKRAIVPCTTGKDVIAQAQSGTGKTATFSVSILQRIDHEDPHVQ------ALVMAPTRE 108
Query: 332 LAVQIQEEALKFCKXXXXXXXXXXXXXELKQQINELKRGVDIIVATPGRFIDLMTLNSGH 391
LA QIQ+ + ++ +L+ G+ ++V TPGR D++ N+
Sbjct: 109 LAQQIQKVMSALGEYLNVNILPCIGGTSVRDDQRKLEAGIHVVVGTPGRVGDMINRNA-- 166
Query: 392 LLSPTRISFVVMDEADRLFDLGFGPQVNQIMGCIRPDKQCVLFSATFPSKLKHFASRTLK 451
L +RI V+DEAD + GF Q+ ++ + D Q VL SAT PS++ +R ++
Sbjct: 167 -LDTSRIKMFVLDEADEMLSRGFKDQIYEVFRSMPQDVQVVLLSATMPSEVLDVTNRFMR 225
Query: 452 NPIQITINSKSLINENIQQRVQIFDEEHVKFEFLLKRLSDRLALHRGEDEKTIIFVGSQQ 511
NPI+I + L E I+Q ++ KF+ L + + +IF +++
Sbjct: 226 NPIRILVKKDELTLEGIRQFYINVQKDEWKFDCLCD------LYNVVNVTQAVIFCNTRR 279
Query: 512 XXXXXXXXXXXNGITTFPIHAGKPSAERLRNLQKFKETDNGILICTEVLSRGLNVPEVSL 571
N T +H AER +++F+ + +LI T++L+RG++V +VSL
Sbjct: 280 KVDTLTEKMTENQFTVSCLHGDMDQAERDTIMREFRSGSSRVLITTDILARGIDVQQVSL 339
Query: 572 VIIYNAAKTIAQYVHXXXXXXXXXXXXXALSFV 604
VI Y+ Y+H A++FV
Sbjct: 340 VINYDLPSNRENYIHRIGRSGRFGRKGVAINFV 372
>Hs13787206 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 670
Score = 141 bits (355), Expect = 5e-33
Identities = 95/325 (29%), Positives = 160/325 (49%), Gaps = 10/325 (3%)
Query: 263 ELQFVTLTPIQCQAIPAIMSGRDVIGISKTGSGKTVAFLLPLVRQIKAQPPLAPDETGPI 322
E+ F +T IQ ++I ++ GRD++ +KTGSGKT+AFL+P V I + + TG
Sbjct: 196 EMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFMTRNGTGV- 254
Query: 323 GLILTPTRELAVQIQEEALKFCKXXXXXXXXXXXXXELKQQINELKRGVDIIVATPGRFI 382
LIL+PTRELA+Q + + +L G++IIVATPGR +
Sbjct: 255 -LILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLGNGINIIVATPGRLL 313
Query: 383 DLMTLNSGHLLSPTRISFVVMDEADRLFDLGFGPQVNQIMGCIRPDKQCVLFSATFPSKL 442
D M G + + +V+DEADR+ D+GF ++ QI+ + +Q +LFSAT K+
Sbjct: 314 DHMQNTPGFMYK--NLQCLVIDEADRILDVGFEEELKQIIKLLPTRRQTMLFSATQTRKV 371
Query: 443 KHFASRTL-KNPIQITINSKSLINENIQQRVQIFDEEHVKFEFLLKRLSDRLALHRGEDE 501
+ A +L K P+ + ++ ++ V ++ +V + L L + +
Sbjct: 372 EDLARISLKKEPLYVGVD-----DDKANATVDGLEQGYVVCPSEKRFLLLFTFLKKNRKK 426
Query: 502 KTIIFVGSQQXXXXXXXXXXXNGITTFPIHAGKPSAERLRNLQKFKETDNGILICTEVLS 561
K ++F S + IH + +R +F D+G L+CT+V +
Sbjct: 427 KLMVFFSSCMSVKYHYELLNYIDLPVLAIHGKQKQNKRTTTFFQFCNADSGTLLCTDVAA 486
Query: 562 RGLNVPEVSLVIIYNAAKTIAQYVH 586
RGL++PEV ++ Y+ +Y+H
Sbjct: 487 RGLDIPEVDWIVQYDPPDDPKEYIH 511
>YDL031w [A] KOG0337 ATP-dependent RNA helicase
Length = 995
Score = 140 bits (354), Expect = 6e-33
Identities = 77/219 (35%), Positives = 129/219 (58%), Gaps = 8/219 (3%)
Query: 251 GLSSEIMDLISNELQFVTLTPIQCQAIPAIMSGRDVIGISKTGSGKTVAFLLPLVRQIKA 310
GLS +++ I + F TPIQ + IP I+ RD++G+++TGSGKT AF+LP+V ++K+
Sbjct: 143 GLSKIVLNNIKRK-GFRQPTPIQRKTIPLILQSRDIVGMARTGSGKTAAFILPMVEKLKS 201
Query: 311 QPPLAPDETGPIGLILTPTRELAVQIQEEALKFCKXXXXXXXXXXXXXELKQQINELKRG 370
+ G +IL+P+RELA+Q F + L++Q +
Sbjct: 202 HS----GKIGARAVILSPSRELAMQTFNVFKDFARGTELRSVLLTGGDSLEEQFGMMMTN 257
Query: 371 VDIIVATPGRFIDLMTLNSGHLLSPTRISFVVMDEADRLFDLGFGPQVNQIMGCIRPDKQ 430
D+I+ATPGRF+ L + L S + +VV DEADRLF++GF Q+N+++ + +Q
Sbjct: 258 PDVIIATPGRFLHLKVEMNLDLKS---VEYVVFDEADRLFEMGFQEQLNELLASLPTTRQ 314
Query: 431 CVLFSATFPSKLKHFASRTLKNPIQITINSKSLINENIQ 469
+LFSAT P+ L F L NP+ + +++++ ++EN++
Sbjct: 315 TLLFSATLPNSLVDFVKAGLVNPVLVRLDAETKVSENLE 353
>YJL033w [A] KOG0343 RNA Helicase
Length = 770
Score = 140 bits (353), Expect = 8e-33
Identities = 102/373 (27%), Positives = 176/373 (46%), Gaps = 32/373 (8%)
Query: 230 LDNIKISGKDCPKPVTK---WSQLGLSSEIMDLISNELQFVTLTPIQCQAIPAIMSGRDV 286
++N+K + +TK + L +S + + E F+ LT IQ +IP + G DV
Sbjct: 23 IENLKTKIDEYDPKITKAKFFKDLPISDPTLKGL-RESSFIKLTEIQADSIPVSLQGHDV 81
Query: 287 IGISKTGSGKTVAFLLPLVRQIKAQPPLAPDETGPIGLILTPTRELAVQIQEEALKFCKX 346
+ +KTGSGKT+AFL+P++ ++ + D G LI++PTRELA+QI E K
Sbjct: 82 LAAAKTGSGKTLAFLVPVIEKLYREKWTEFDGLG--ALIISPTRELAMQIYEVLTKIGSH 139
Query: 347 XXXXXXXXXXXXELKQQINELKRGVDIIVATPGRFIDLMTLNSGHLLSPTRISFVVMDEA 406
++K ++ + R ++I++ TPGR L L+ L+ + + +V+DEA
Sbjct: 140 TSFSAGLVIGGKDVKFELERISR-INILIGTPGRI--LQHLDQAVGLNTSNLQMLVLDEA 196
Query: 407 DRLFDLGFGPQVNQIMGCIRPDKQCVLFSATFPSKLKHFASRTLKNPIQI--------TI 458
DR D+GF ++ I+ + P +Q +LFSAT + A +L + + ++
Sbjct: 197 DRCLDMGFKKTLDAIVSTLSPSRQTLLFSATQSQSVADLARLSLTDYKTVGTHDVMDGSV 256
Query: 459 NSKSLINENIQQ---RVQIFDEEHVKFEFLLKRLSDRLALHRGEDEKTIIFVGS--QQXX 513
N ++ E +QQ V + D+ + F F+ L K I+F+ S Q
Sbjct: 257 NKEASTPETLQQFYIEVPLADKLDILFSFIKSHLKC----------KMIVFLSSSKQVHF 306
Query: 514 XXXXXXXXXNGITTFPIHAGKPSAERLRNLQKFKETDNGILICTEVLSRGLNVPEVSLVI 573
GI+ +H + R L KF L T+V++RG++ P V V+
Sbjct: 307 VYETFRKMQPGISLMHLHGRQKQRARTETLDKFNRAQQVCLFATDVVARGIDFPAVDWVV 366
Query: 574 IYNAAKTIAQYVH 586
+ + + Y+H
Sbjct: 367 QVDCPEDVDTYIH 379
>7297629 [A] KOG0326 ATP-dependent RNA helicase
Length = 458
Score = 140 bits (353), Expect = 8e-33
Identities = 101/376 (26%), Positives = 177/376 (46%), Gaps = 18/376 (4%)
Query: 270 TPIQCQAIPAIMSGRDVIGISKTGSGKTVAFLLPLVRQIKAQPPLAPDETGPIGLILTPT 329
+PIQ AIP +SG+DV+ +K G+GKT A+ +P++ QI P + L++ PT
Sbjct: 81 SPIQEAAIPIALSGKDVLARAKNGTGKTGAYCIPVLEQID------PTKDYIQALVMVPT 134
Query: 330 RELAVQIQEEALKFCKXXXXXXXXXXXXXELKQQINELKRGVDIIVATPGRFIDLMTLNS 389
RELA+Q + ++ K LK I + + V +I+ATPGR +DLM
Sbjct: 135 RELALQTSQICIELAKHLDIRVMVTTGGTILKDDILRIYQKVQLIIATPGRILDLMDKKV 194
Query: 390 GHLLSPTRISFVVMDEADRLFDLGFGPQVNQIMGCIRPDKQCVLFSATFPSKLKHFASRT 449
+ + +V+DEAD+L L F ++ ++ + D Q +LFSATFP +K+F +
Sbjct: 195 ADM---SHCRILVLDEADKLLSLDFQGMLDHVILKLPKDPQILLFSATFPLTVKNFMEKH 251
Query: 450 LKNPIQITINSKSLINENIQQRVQIFDEEHVKFEFLLKRLSDRLALHRGEDEKTIIFVGS 509
L+ P +I + + + Q + + + V L L +L ++ ++IIF S
Sbjct: 252 LREPYEINLMEELTLKGVTQYYAFVQERQKV---HCLNTLFSKLQIN-----QSIIFCNS 303
Query: 510 QQXXXXXXXXXXXNGITTFPIHAGKPSAERLRNLQKFKETDNGILICTEVLSRGLNVPEV 569
Q G + IHA A R R F++ L+C+++ +RG++V V
Sbjct: 304 TQRVELLAKKITELGYCCYYIHAKMAQAHRNRVFHDFRQGLCRNLVCSDLFTRGIDVQAV 363
Query: 570 SLVIIYNAAKTIAQYVHXXXXXXXXXXXXXALSFVMVDELASAYILVKCMKENELSSVPM 629
++VI ++ + Y+H A++ + ++ + + K + E+ +P
Sbjct: 364 NVVINFDFPRMAETYLHRIGRSGRFGHLGIAINLITYEDRFDLHRIEKEL-GTEIKPIPK 422
Query: 630 VVYQKLKEMNDEFSSG 645
V+ L N S G
Sbjct: 423 VIDPALYVANVGASVG 438
>At1g71370 [A] KOG0345 ATP-dependent RNA helicase
Length = 558
Score = 140 bits (352), Expect = 1e-32
Identities = 107/382 (28%), Positives = 178/382 (46%), Gaps = 24/382 (6%)
Query: 241 PKPVTK----WSQLG--LSSEIMDLISNELQFVTLTPIQCQAIPAIMSGRDVIGISKTGS 294
PK +TK +S+L LS +I++ + F TP+Q + IP + S +DV+ + TGS
Sbjct: 6 PKTITKALPRFSELKPPLSEDIIEALDRS-GFEVCTPVQAETIPFLCSHKDVVVDAATGS 64
Query: 295 GKTVAFLLPLVRQIKAQPPLAPDETGPIGLILTPTRELAVQIQEEALKFCKXX-XXXXXX 353
GKT+AFLLP + I+ P +G+I++PTREL+ QI + A F
Sbjct: 65 GKTLAFLLPFIEIIRRSNSYPPKPHQVMGVIISPTRELSAQIHKVAEPFVSTLPNVNSVL 124
Query: 354 XXXXXELKQQINEL-KRGVDIIVATPGRFIDLMTLNSGHLLSPTRISFVVMDEADRLFDL 412
E++ +N L + G ++++ TPGR D+M L + +++DEADRL D+
Sbjct: 125 LVGGREVEADMNTLEEEGANLLIGTPGRLSDMM--KRMEFLDFRNLEILILDEADRLLDM 182
Query: 413 GFGPQVNQIMGCIRPDKQCVLFSATFPSKLKHFASRTLKNPIQIT--INSKSLINENIQQ 470
GF QVN I+ + ++ LFSAT + A L+N +++ SKS + +
Sbjct: 183 GFQKQVNYIISRLPKQRRTGLFSATQTQAVADLAKAGLRNAMEVISGAESKSKTSSGLYC 242
Query: 471 RVQIFDEEHVKFEFLLKRLSDRLALHRGEDEKTIIFVGS----QQXXXXXXXXXXXNGIT 526
E++K E K L +++K ++F + I+
Sbjct: 243 -------EYLKCEADQKSSQLVHLLIENKNKKLVVFFMTCACVDYWGLVLSKIPTLKSIS 295
Query: 527 TFPIHAGKPSAERLRNLQKFKETDNGILICTEVLSRGLNVPEVSLVIIYNAAKTIAQYVH 586
F H R L F E +G+L+CT+V +RGL++P + V+ Y+ + ++H
Sbjct: 296 FFSTHGKMDQKGRDTALASFTEASSGVLLCTDVAARGLDIPGIDYVVQYDPPQDPDVFIH 355
Query: 587 XXXXXXXXXXXXXALSFVMVDE 608
A+ F+M E
Sbjct: 356 RVGRTARMERQGRAIVFLMPKE 377
>7299019 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 involved in
rRNA maturation DEAD-box superfamily
Length = 399
Score = 140 bits (352), Expect = 1e-32
Identities = 104/380 (27%), Positives = 177/380 (46%), Gaps = 16/380 (4%)
Query: 230 LDNIKISGKDCPKPVTKWSQLGLSSEIMDLISNELQFVTLTPIQCQAIPAIMSGRDVIGI 289
L N++ + + + ++ + L E++ I F + IQ ++I I+ GRDVI
Sbjct: 11 LSNVEFETSEDVEVIPTFNAMNLKEELLRGIY-AYGFEKPSAIQQRSITPIVKGRDVIAQ 69
Query: 290 SKTGSGKTVAFLLPLVRQIKAQPPLAPDETGPIGLILTPTRELAVQIQEEALKFCKXXXX 349
+++G+GKT F + +++ + L + L L+PTRELAVQIQ+ L
Sbjct: 70 AQSGTGKTATFSISILQSLDTT--LRETQV----LCLSPTRELAVQIQKVILALGDMMNV 123
Query: 350 XXXXXXXXXELKQQINELKRGVDIIVATPGRFIDLMTLNSGHLLSPTRISFVVMDEADRL 409
L + I +L G I+ TPGR D++ +L I +V+DEAD +
Sbjct: 124 QCHVCIGGTNLGEDIRKLDYGQHIVSGTPGRVFDMI---KRRVLRTRAIKMLVLDEADEM 180
Query: 410 FDLGFGPQVNQIMGCIRPDKQCVLFSATFPSKLKHFASRTLKNPIQITINSKSLINENIQ 469
+ GF Q+ + + P Q VL SAT P ++ S+ + +PI+I + L E I+
Sbjct: 181 LNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTSKFMTDPIRILVKRDELTLEGIK 240
Query: 470 QRVQIFDEEHVKFEFLLKRLSDRLALHRGEDEKTIIFVGSQQXXXXXXXXXXXNGITTFP 529
Q + E KF+ L L D L + + +IF +++ T
Sbjct: 241 QFFVAVEREEWKFDTLCD-LYDTLTI-----TQAVIFCNTKRKVDWLTEKMREANFTVSS 294
Query: 530 IHAGKPSAERLRNLQKFKETDNGILICTEVLSRGLNVPEVSLVIIYNAAKTIAQYVHXXX 589
+H P ER +++F+ + +LI T+V +RG++V +VSLVI Y+ Y+H
Sbjct: 295 MHGDMPQKERDEIMKEFRAGQSRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIG 354
Query: 590 XXXXXXXXXXALSFVMVDEL 609
A++FV D++
Sbjct: 355 RSGRFGRKGVAINFVKSDDI 374
>At5g08620 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 563
Score = 139 bits (349), Expect = 2e-32
Identities = 103/353 (29%), Positives = 169/353 (47%), Gaps = 19/353 (5%)
Query: 245 TKWSQLGLSSEIMDLISNELQFVTLTPIQCQAIPAIMSGRDVIGISKTGSGKTVAFLLPL 304
T++ Q LS + I + F T+T +Q +P I+ G+D++ +KTG+GKTVAFLLP
Sbjct: 80 TRFDQFPLSPLTLKGIE-DAGFKTMTVVQEATLPLILQGKDILAKAKTGTGKTVAFLLPS 138
Query: 305 VRQIKAQPPLAPDETGP--IGLILTPTRELAVQIQEEA---LKFCKXXXXXXXXXXXXXE 359
+ + PP + D P I L++ PTRELA Q EA LK+
Sbjct: 139 IEAVIKAPPASRDNRHPPIIVLVVCPTRELACQAAAEANILLKYHPSIGVQVVIGGTKLP 198
Query: 360 LKQQINELKRGVDIIVATPGRFIDLMTLNSGHLLSPTRISFVVMDEADRLFDLGFGPQVN 419
+Q+ + K I+VATPGR D + SG + +V+DEAD L D+GF ++
Sbjct: 199 TEQRRLQ-KSPCQILVATPGRLKDHIDNTSGFATRLMGVKVLVLDEADHLLDMGFRREIE 257
Query: 420 QIMGCIRPDKQCVLFSATFPSKLKHFASRTLKNPIQITINSKSLINENIQQRVQIFD--- 476
+I+ + +Q LFSAT +++ LK + + E Q+ Q++
Sbjct: 258 RIIAAVPKQRQTFLFSATVSDEVRQICHVALKRDHEFVNCVQEGAGETHQKVSQMYMIAS 317
Query: 477 -EEH--VKFEFLLKRLSDRLALHRGEDEKTIIFVGSQQXXXXXXXXXXXNGITTFPIHAG 533
+ H + + L K ++D + K IIF + + IH+
Sbjct: 318 LDRHFSLLYGLLKKHITDNVGY------KVIIFCTTAMVTRLVADLLGKLSLNVREIHSR 371
Query: 534 KPSAERLRNLQKFKETDNGILICTEVLSRGLNVPEVSLVIIYNAAKTIAQYVH 586
KP + R R +F+++ + IL+ ++V +RG++ P+VSLV+ QY+H
Sbjct: 372 KPQSYRTRVSDEFRKSKSIILVTSDVSARGVDYPDVSLVVQMGLPSDREQYIH 424
>YHR169w [A] KOG0340 ATP-dependent RNA helicase
Length = 431
Score = 138 bits (348), Expect = 3e-32
Identities = 106/366 (28%), Positives = 167/366 (44%), Gaps = 19/366 (5%)
Query: 247 WSQLGLSSEIMDLISNELQFVTLTPIQCQAIPAIMSGRDVIGISKTGSGKTVAFLLPLVR 306
+ LGLS + + + ++ T IQ IP I+ GRD IG +KTGSGKT+AF P++
Sbjct: 4 FKSLGLSKWLTESL-RAMKITQPTAIQKACIPKILEGRDCIGGAKTGSGKTIAFAGPMLT 62
Query: 307 QIKAQPPLAPDETGPIGLILTPTRELAVQIQEEALKFCKXXXXXXXXXXXXXELKQQINE 366
+ P +G G++LTPTRELA+QI E+ + QQ +
Sbjct: 63 KWSEDP------SGMFGVVLTPTRELAMQIAEQFTALGSSMNIRVSVIVGGESIVQQALD 116
Query: 367 LKRGVDIIVATPGRFID-LMTLNSGHLLSPTRISFVVMDEADRLFDLGFGPQVNQIMGCI 425
L+R I+ATPGR +M+ + R ++V+DEAD L F + + +
Sbjct: 117 LQRKPHFIIATPGRLAHHIMSSGDDTVGGLMRAKYLVLDEADILLTSTFADHLATCISAL 176
Query: 426 RPD--KQCVLFSATFPSKLKHFASRTLKN--PIQITINSKSLINENIQQRVQI---FDEE 478
P +Q +LF+AT ++K + ++ P +S+ N I ++I E
Sbjct: 177 PPKDKRQTLLFTATITDQVKSLQNAPVQKGKPPLFAYQVESVDNVAIPSTLKIEYILVPE 236
Query: 479 HVKFEFLLKRLSDRLALHRGEDEKTIIFVGSQQXXXXXXXXXXXNGITTFPIHAGKPSAE 538
HVK +L + L+ E++ IIFV + +H+ P E
Sbjct: 237 HVKEAYLYQLLT----CEEYENKTAIIFVNRTMTAEILRRTLKQLEVRVASLHSQMPQQE 292
Query: 539 RLRNLQKFKETDNGILICTEVLSRGLNVPEVSLVIIYNAAKTIAQYVHXXXXXXXXXXXX 598
R +L +F+ ILI T+V SRGL++P V LV+ Y+ ++H
Sbjct: 293 RTNSLHRFRANAARILIATDVASRGLDIPTVELVVNYDIPSDPDVFIHRSGRTARAGRIG 352
Query: 599 XALSFV 604
A+SFV
Sbjct: 353 DAISFV 358
>7302399 [A] KOG0347 RNA helicase
Length = 813
Score = 138 bits (347), Expect = 4e-32
Identities = 136/556 (24%), Positives = 229/556 (40%), Gaps = 100/556 (17%)
Query: 220 EKDVEELRLSLDNIKISGKDCPKPV----------TKWSQLGLSSEIMDLISNELQFVTL 269
E++V + S D + + ++ P+ V + W+ LG+ + I+ + E F T
Sbjct: 180 EEEVVKAEDSADQQESTDEEAPELVPISTGEAEDMSAWNGLGVPASILRALG-EQGFKTP 238
Query: 270 TPIQCQAIPAIMSGR-DVIGISKTGSGKTVAFLLPLV--------RQIKA---------- 310
T IQ +PA + G+ D++G ++TGSGKT+AF +P++ R I++
Sbjct: 239 TQIQALTLPAAIHGKKDILGAAETGSGKTLAFGIPMLAGIMELKQRNIRSGIRKAPKVKG 298
Query: 311 -QPPLAPDE-------------------------------TGPIGLILTPTRELAVQIQE 338
QP A DE T GL+LTPTRELAVQ++
Sbjct: 299 QQPEPAADEHELTPPPEELDHVSGASDEESDAEEQAQRVQTPLYGLVLTPTRELAVQVKN 358
Query: 339 EALKFCKXXXXXXXXXXXXXELKQQINELKRGVDIIVATPGRFIDLMTLNSGHLLSPTRI 398
+ K + +Q L++ DI+VATPGR +L + HL +
Sbjct: 359 HLVAAAKYTGIRVAAIFGGLAVAKQERVLRQCPDIVVATPGRLWELYAQGNRHLGKIEDV 418
Query: 399 SFVVMDEADRLFDLGFGPQVNQIMGCIRPD------KQCVLFSATFP------------- 439
SF+V+DE DR+ + G ++ ++ + D +Q ++SAT
Sbjct: 419 SFLVIDETDRMVEKGHFEELRSLLKVLNSDEQKKHQRQNFVYSATLTLVHDLPDHMQKRN 478
Query: 440 -SKLKHFASRTLKNPIQITINSKSLINENI------QQRVQIFDEEHVKFEFLLK--RLS 490
K F +T+ I+ I + I QQ Q E + K L
Sbjct: 479 VGKRPKFVKQTVDQKIESLIEELGISQPKIVDITSSQQTAQTLTESRLLCPIDHKDYHLY 538
Query: 491 DRLALHRGEDEKTIIFVGSQQXXXXXXXXXXXNGITTFPIHAGKPSAERLRNLQKFKETD 550
+ H G +TI+F S P+HA +RL+NL++F+++
Sbjct: 539 YFIQRHPG---RTIVFCNSIDCVKRLATLFGLLDCNPLPLHANMIQKQRLKNLERFRDSP 595
Query: 551 NGILICTEVLSRGLNVPEVSLVIIYNAAKTIAQYVHXXXXXXXXXXXXXALSFVMVDELA 610
G+LI T+V +RGL++P V VI Y +T YVH + F+ E+
Sbjct: 596 TGLLIATDVAARGLDIPNVEHVIHYQVPRTSENYVHRSGRTARANKHGITVMFMEPGEVK 655
Query: 611 SAYILVKCMKENE-LSSVPMV------VYQKLKEMNDEFSSGLKTGKYRLIQGFGGKGLD 663
S L K ++ E L P++ V +++ D LK + + +G+ K +
Sbjct: 656 SYVKLYKTLERTEDLPLFPILERFMGAVRERVNLARDLDKEELKLKRVQSERGWMKKHAE 715
Query: 664 HLDELNEAKQSQEYTD 679
+D + + + +D
Sbjct: 716 EMDMIIDGYNDESGSD 731
>CE09012 [A] KOG0335 ATP-dependent RNA helicase
Length = 974
Score = 137 bits (345), Expect = 7e-32
Identities = 114/408 (27%), Positives = 181/408 (43%), Gaps = 25/408 (6%)
Query: 216 GLMSEKDVE-ELRLSLDNIKISGKDCPKPVTKWSQLGLSSEIMDLISNELQFVTLTPIQC 274
GLM K + E++++ D + K C +S+ L + +++ + TPIQ
Sbjct: 526 GLMFNKFFDAEVKITSDKKPVGVKTCKT----FSEANLGETMKKNVAHA-GYTKTTPIQQ 580
Query: 275 QAIPAIMSGRDVIGISKTGSGKTVAFLLPLVRQIKAQPPLAPDETG---PIGLILTPTRE 331
+P I G D++ ++TGSGKT AFLLP++ ++ + L G P +ILTPTRE
Sbjct: 581 YTLPLIHQGHDIMACAQTGSGKTAAFLLPIMARLIDENDLNTAGEGGCYPRCIILTPTRE 640
Query: 332 LAVQIQEEALKFCKXXXXXXXXXXXXXELKQQINELKRGVDIIVATPGRFIDLMTLNSGH 391
L QI E KF + ++++G IIV T GR +
Sbjct: 641 LTDQIYNEGRKFAYQTMMEIRPVYGGLAVGYNKGQIEKGATIIVGTVGRIKHFCEEGTIK 700
Query: 392 LLSPTRISFVVMDEADRLFD-LGFGPQVNQIMGCI----RPDKQCVLFSATFPSKLKHFA 446
L + F V+DEADR+ D +GFG ++ I+ + ++Q ++FSATFP ++ A
Sbjct: 701 L---DKCRFFVLDEADRMIDAMGFGTDIDTIVNYESMPKKENRQTLMFSATFPDSVQEAA 757
Query: 447 SRTLKNP-IQITINSKSLINENIQQRVQIFDEEHVKFEFLLKRLSDRLALHRGED----- 500
LK I + I+ N+ + Q + D K + LL+ L + + E
Sbjct: 758 RNHLKEGYIMLAIDKIGAANKCVLQEFEKCDRSEKK-DKLLEILGIDIDSYTTEKNSEVY 816
Query: 501 -EKTIIFVGSQQXXXXXXXXXXXNGITTFPIHAGKPSAERLRNLQKFKETDNGILICTEV 559
+KTI+FV + + IH + ER L++F+ +LI T V
Sbjct: 817 TKKTIVFVSQRAMADTLASILSSAQVPAITIHGAREQRERSEALRQFRNGSKPVLIATAV 876
Query: 560 LSRGLNVPEVSLVIIYNAAKTIAQYVHXXXXXXXXXXXXXALSFVMVD 607
RGL++ V VI Y+ I Y+H A SF+ D
Sbjct: 877 AERGLDIKGVDHVINYDMPDNIDDYIHRIGRTGRVGNAGRATSFISED 924
>7300808 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 663
Score = 137 bits (345), Expect = 7e-32
Identities = 92/342 (26%), Positives = 168/342 (48%), Gaps = 20/342 (5%)
Query: 251 GLSSEIMDLISNELQFVTLTPIQCQAIPAIMSGRDVIGISKTGSGKTVAFLLPLVRQIKA 310
G SE E+ F +T IQ +++ ++ GRD++G ++TGSGKT+AFL+P V I
Sbjct: 175 GAVSEATLRAIKEMGFTEMTEIQSKSLTPLLKGRDLVGAAQTGSGKTLAFLIPAVELINK 234
Query: 311 QPPLAPDETGPIGLILTPTRELAVQIQEEALKFCKXXXXXXXXXXXXXELKQQINELKRG 370
+ + TG I I++PTREL++Q + + + +L +G
Sbjct: 235 LRFMPRNGTGVI--IISPTRELSMQTFGVLKELMAHHHHTYGLVMGGSNRQVESEKLGKG 292
Query: 371 VDIIVATPGRFIDLMTLNSGHLLSPTRISFVVMDEADRLFDLGFGPQVNQIMGCIRPDKQ 430
++I+VATPGR +D + + L + +++DE DR+ ++GF ++ QI+ + +Q
Sbjct: 293 INILVATPGRLLDHLQNSPDFLYK--NLQCLIIDEVDRILEIGFEEELKQIINLLPKRRQ 350
Query: 431 CVLFSATFPSKLKHFASRTLKN-PIQITI--NSKSLINENIQQRVQIFDEEH---VKFEF 484
+LFSAT ++++ + LK+ PI + + N + + ++Q + E V F F
Sbjct: 351 TMLFSATQTARIEALSKLALKSEPIYVGVHDNQDTATVDGLEQGYIVCPSEKRLLVLFTF 410
Query: 485 LLKRLSDRLALHRGEDEKTIIFVGSQQXXXXXXXXXXXNGITTFPIHAGKPSAERLRNLQ 544
L K +K ++F S + IH + +R
Sbjct: 411 LKK----------NRKKKVMVFFSSCMSVKYHHELFNYIDLPVTSIHGKQKQTKRTTTFF 460
Query: 545 KFKETDNGILICTEVLSRGLNVPEVSLVIIYNAAKTIAQYVH 586
+F ++GIL+CT+V +RGL++P+V ++ Y+ +Y+H
Sbjct: 461 QFCNAESGILLCTDVAARGLDIPQVDWIVQYDPPDDPREYIH 502
>Hs13514831 [A] KOG0343 RNA Helicase
Length = 875
Score = 136 bits (342), Expect = 1e-31
Identities = 107/400 (26%), Positives = 185/400 (45%), Gaps = 18/400 (4%)
Query: 244 VTKWSQLGLSSEIMDLISNELQFVTLTPIQCQAIPAIMSGRDVIGISKTGSGKTVAFLLP 303
+T++S LS + + + E Q+ +T IQ Q I + G+DV+G +KTGSGKT+AFL+P
Sbjct: 68 ITRFSDFPLSKKTLKGLQ-EAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVP 126
Query: 304 LVRQIKAQPPLAPDETGPIGLILTPTRELAVQIQEEALKFCKXXXXXXXXXXXXXELKQQ 363
++ + + D G LI++PTRELA Q E K K +LK +
Sbjct: 127 VLEALYRLQWTSTDGLGV--LIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHE 184
Query: 364 INELKRGVDIIVATPGRFIDLMTLNSGHLLSPTRISFVVMDEADRLFDLGFGPQVNQIMG 423
+ ++I+V TPGR + M T + +V+DEADR+ D+GF +N ++
Sbjct: 185 AERINN-INILVCTPGRLLQHMDETVS--FHATDLQMLVLDEADRILDMGFADTMNAVIE 241
Query: 424 CIRPDKQCVLFSATFPSKLKHFASRTLKNPIQITINSKSLINENIQ-QRVQIFDEEHVKF 482
+ +Q +LFSAT +K A +LKNP + ++ K+ + ++ I E K
Sbjct: 242 NLPKKRQTLLFSATQTKSVKDLARLSLKNPEYVWVHEKAKYSTPATLEQNYIVCELQQKI 301
Query: 483 EFLLKRLSDRLALHRGEDEKTIIFVGS--QQXXXXXXXXXXXNGITTFPIHAGKPSAERL 540
L L L +K+I+F S + G++ +H + R+
Sbjct: 302 SVLYSFLRSHL------KKKSIVFFSSCKEVQYLYRVFCRLRPGVSILALHGRQQQMRRM 355
Query: 541 RNLQKFKETDNGILICTEVLSRGLNVPEVSLVIIYNAAKTIAQYVHXXXXXXXXXXXXXA 600
+F +L T++ +RGL+ P V+ V+ ++ + Y+H A
Sbjct: 356 EVYNEFVRKRAAVLFATDIAARGLDFPAVNWVLQFDCPEDANTYIHRAGRTARYKEDGEA 415
Query: 601 LSFVMVDELASAYILVK---CMKENELSSVPMVVYQKLKE 637
L ++ E A L++ +KE +++ ++ QK E
Sbjct: 416 LLILLPSEKAMVQQLLQKKVPVKEIKINPEKLIDVQKKLE 455
>CE25531 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 involved in
rRNA maturation DEAD-box superfamily
Length = 508
Score = 136 bits (342), Expect = 1e-31
Identities = 97/308 (31%), Positives = 152/308 (48%), Gaps = 15/308 (4%)
Query: 272 IQCQAIPAIMSGRDVIGISKTGSGKTVAFLLPLVRQIKAQPPLAPDETGPIGLILTPTRE 331
IQ +AIPAI+ RDVI +++G+GKT F + +++ + Q ET LIL+PTRE
Sbjct: 52 IQQRAIPAILKARDVIAQAQSGTGKTATFSISVLQSLDTQVR----ETQ--ALILSPTRE 105
Query: 332 LAVQIQEEALKFCKXXXXXXXXXXXXXELKQQINELKRGVDIIVATPGRFIDLMTLNSGH 391
LAVQIQ+ L L + I +L G ++ TPGR D++ +
Sbjct: 106 LAVQIQKVVLALGDYMNVQCHACIGGTNLGEDIRKLDYGQHVVSGTPGRVFDMIRRRN-- 163
Query: 392 LLSPTRISFVVMDEADRLFDLGFGPQVNQIMGCIRPDKQCVLFSATFPSKLKHFASRTLK 451
L I +V+DEAD + + GF Q+ I + P Q VL SAT P ++ S+ +
Sbjct: 164 -LRTRAIKLLVLDEADEMLNKGFKEQLYDIYRYLPPGAQVVLLSATLPHEILEMTSKFMT 222
Query: 452 NPIQITINSKSLINENIQQRVQIFDEEHVKFEFLLKRLSDRLALHRGEDEKTIIFVGSQQ 511
+PI+I + L E I+Q D E KF+ L+ L D L + + ++F +++
Sbjct: 223 DPIRILVKRDELTLEGIKQFFVAVDREEWKFDTLID-LYDTLTI-----TQAVLFCNTRR 276
Query: 512 XXXXXXXXXXXNGITTFPIHAGKPSAERLRNLQKFKETDNGILICTEVLSRGLNVPEVSL 571
T +H +R +++F+ +LI T+V +RGL+VP+VSL
Sbjct: 277 KVDWLTDKMKEANFTVSSMHGDMEQKDRDEVMKEFRAGTTRVLISTDVWARGLDVPQVSL 336
Query: 572 VIIYNAAK 579
V +AK
Sbjct: 337 VHFRFSAK 344
>Hs13787209 [A] KOG0331 ATP-dependent RNA helicase
Length = 715
Score = 135 bits (339), Expect = 3e-31
Identities = 96/347 (27%), Positives = 162/347 (46%), Gaps = 18/347 (5%)
Query: 247 WSQLGLSSEIMDLISNELQFVTLTPIQCQAIPAIMSGRDVIGISKTGSGKTVAFLLPLVR 306
+S +S E + L+ L PIQ + + SG+D+I ++TG+GKT +F +PL+
Sbjct: 120 FSNFPISEETIKLLKGR-GVTFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIE 178
Query: 307 QIKAQPPLAPDETGPIGLILTPTRELAVQIQEEALKFCKXXXXXXXXXXXXXELKQQINE 366
++ + P L+L PTRELA Q+ ++ K Q
Sbjct: 179 KLHGELQDRKRGRAPQVLVLAPTRELANQVSKDFSDITK--KLSVACFYGGTPYGGQFER 236
Query: 367 LKRGVDIIVATPGRFIDLMTLNSGHLLSPTRISFVVMDEADRLFDLGFGPQVNQIMGCI- 425
++ G+DI+V TPGR D + +G L T++ VV+DE D++ D+GF QV +I+
Sbjct: 237 MRNGIDILVGTPGRIKD--HIQNGK-LDLTKLKHVVLDEVDQMLDMGFADQVEEILSVAY 293
Query: 426 ----RPDKQCVLFSATFPSKLKHFASRTLKNPIQITINSKSLINENIQQRVQIFDEEHVK 481
+ Q +LFSAT P H+ K ++ T LI + Q+ + +K
Sbjct: 294 KKDSEDNPQTLLFSATCP----HWVFNVAKKYMKSTYEQVDLIGKKTQKTAITVEHLAIK 349
Query: 482 FEFLLKR--LSDRLALHRGEDEKTIIFVGSQQXXXXXXXXXXXNGITTFPIHAGKPSAER 539
+ + + D + ++ G +TIIF +++ +H P +R
Sbjct: 350 CHWTQRAAVIGDVIRVYSGHQGRTIIFCETKKEAQELSQNSAIKQ-DAQSLHGDIPQKQR 408
Query: 540 LRNLQKFKETDNGILICTEVLSRGLNVPEVSLVIIYNAAKTIAQYVH 586
L+ F+ G+L+ T V +RGL++PEV LVI + K + Y+H
Sbjct: 409 EITLKGFRNGSFGVLVATNVAARGLDIPEVDLVIQSSPPKDVESYIH 455
>YKR059w [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 395
Score = 134 bits (338), Expect = 4e-31
Identities = 102/379 (26%), Positives = 175/379 (45%), Gaps = 22/379 (5%)
Query: 245 TKWSQLGLSSEIMDLISNELQ------FVTLTPIQCQAIPAIMSGRDVIGISKTGSGKTV 298
T + ++ + M+L N L+ F + IQ +AI I+ G DV+ +++G+GKT
Sbjct: 15 TNYDKVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTG 74
Query: 299 AFLLPLVRQIKAQPPLAPDETGPIGLILTPTRELAVQIQEEALKFCKXXXXXXXXXXXXX 358
F + +++I P L+L PTRELA+QIQ+ +
Sbjct: 75 TFSIAALQRIDTSVK------APQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGT 128
Query: 359 ELKQQINELKRGVDIIVATPGRFIDLMTLNSGHLLSPTRISFVVMDEADRLFDLGFGPQV 418
+ L R I+V TPGR D + +I ++DEAD + GF Q+
Sbjct: 129 SFVEDAEGL-RDAQIVVGTPGRVFDNIQRRR---FRTDKIKMFILDEADEMLSSGFKEQI 184
Query: 419 NQIMGCIRPDKQCVLFSATFPSKLKHFASRTLKNPIQITINSKSLINENIQQRVQIFDEE 478
QI + P Q VL SAT P+ + ++ ++NP++I + L E I+Q +EE
Sbjct: 185 YQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKDELTLEGIKQFYVNVEEE 244
Query: 479 HVKFEFLLKRLSDRLALHRGEDEKTIIFVGSQQXXXXXXXXXXXNGITTFPIHAGKPSAE 538
K+E L L D +++ + +IF +++ + T I++ P E
Sbjct: 245 EYKYE-CLTDLYDSISV-----TQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQE 298
Query: 539 RLRNLQKFKETDNGILICTEVLSRGLNVPEVSLVIIYNAAKTIAQYVHXXXXXXXXXXXX 598
R +++F+ + ILI T++L+RG++V +VSLVI Y+ Y+H
Sbjct: 299 RDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKG 358
Query: 599 XALSFVMVDELASAYILVK 617
A++FV +++ + L K
Sbjct: 359 VAINFVTNEDVGAMRELEK 377
>YJL138c [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 395
Score = 134 bits (338), Expect = 4e-31
Identities = 102/379 (26%), Positives = 175/379 (45%), Gaps = 22/379 (5%)
Query: 245 TKWSQLGLSSEIMDLISNELQ------FVTLTPIQCQAIPAIMSGRDVIGISKTGSGKTV 298
T + ++ + M+L N L+ F + IQ +AI I+ G DV+ +++G+GKT
Sbjct: 15 TNYDKVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTG 74
Query: 299 AFLLPLVRQIKAQPPLAPDETGPIGLILTPTRELAVQIQEEALKFCKXXXXXXXXXXXXX 358
F + +++I P L+L PTRELA+QIQ+ +
Sbjct: 75 TFSIAALQRIDTSVK------APQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGT 128
Query: 359 ELKQQINELKRGVDIIVATPGRFIDLMTLNSGHLLSPTRISFVVMDEADRLFDLGFGPQV 418
+ L R I+V TPGR D + +I ++DEAD + GF Q+
Sbjct: 129 SFVEDAEGL-RDAQIVVGTPGRVFDNIQRRR---FRTDKIKMFILDEADEMLSSGFKEQI 184
Query: 419 NQIMGCIRPDKQCVLFSATFPSKLKHFASRTLKNPIQITINSKSLINENIQQRVQIFDEE 478
QI + P Q VL SAT P+ + ++ ++NP++I + L E I+Q +EE
Sbjct: 185 YQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKDELTLEGIKQFYVNVEEE 244
Query: 479 HVKFEFLLKRLSDRLALHRGEDEKTIIFVGSQQXXXXXXXXXXXNGITTFPIHAGKPSAE 538
K+E L L D +++ + +IF +++ + T I++ P E
Sbjct: 245 EYKYE-CLTDLYDSISV-----TQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQE 298
Query: 539 RLRNLQKFKETDNGILICTEVLSRGLNVPEVSLVIIYNAAKTIAQYVHXXXXXXXXXXXX 598
R +++F+ + ILI T++L+RG++V +VSLVI Y+ Y+H
Sbjct: 299 RDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKG 358
Query: 599 XALSFVMVDELASAYILVK 617
A++FV +++ + L K
Sbjct: 359 VAINFVTNEDVGAMRELEK 377
>CE25121 [A] KOG0335 ATP-dependent RNA helicase
Length = 763
Score = 134 bits (337), Expect = 6e-31
Identities = 106/381 (27%), Positives = 171/381 (44%), Gaps = 20/381 (5%)
Query: 242 KPVTKWSQLGLSSEIMDLISNELQFVTLTPIQCQAIPAIMSGRDVIGISKTGSGKTVAFL 301
KP +++ L+ + +++ + TPIQ A+P + G D++ ++TGSGKT AFL
Sbjct: 338 KPCKTFAEANLTETMQKNVAHA-GYSKTTPIQQYALPLVHQGYDIMACAQTGSGKTAAFL 396
Query: 302 LPLVRQIKAQPPLAPDETG---PIGLILTPTRELAVQIQEEALKFCKXXXXXXXXXXXXX 358
LP++ ++ L G P +ILTPTRELA QI E KF
Sbjct: 397 LPIMTRLIDDNNLNTAGEGGCYPRCIILTPTRELADQIYNEGRKFAYQTMMEIKPVYGGL 456
Query: 359 ELKQQINELKRGVDIIVATPGRFIDLMTLNSGHLLSPTRISFVVMDEADRLFD-LGFGPQ 417
+ ++++G IIV T GR + L + F V+DEADR+ D +GFG
Sbjct: 457 AVGYNKGQIEKGATIIVGTVGRIKHFCEEGTIKL---DKCRFFVLDEADRMIDAMGFGTD 513
Query: 418 VNQIMGCI----RPDKQCVLFSATFPSKLKHFASRTLK-NPIQITINSKSLINENIQQRV 472
+ I+ + ++Q ++FSATFP ++ A L+ N + I I+ N+ + Q
Sbjct: 514 IETIVNYDSMPRKENRQTLMFSATFPDSVQEAARAFLRENYVMIAIDKIGAANKCVLQEF 573
Query: 473 QIFDEEHVKFEFLLKRLSDRLALHRGED------EKTIIFVGSQQXXXXXXXXXXXNGIT 526
+ + K + LL+ L + + E +KT++FV + +
Sbjct: 574 ERCERSEKK-DKLLELLGIDIDSYTTEKSAEVYTKKTMVFVSQRAMADTLASILSSAQVP 632
Query: 527 TFPIHAGKPSAERLRNLQKFKETDNGILICTEVLSRGLNVPEVSLVIIYNAAKTIAQYVH 586
IH + ER L++F+ +LI T V RGL++ V VI Y+ I Y+H
Sbjct: 633 AITIHGAREQRERSEALRQFRNGSKPVLIATAVAERGLDIKGVDHVINYDMPDNIDDYIH 692
Query: 587 XXXXXXXXXXXXXALSFVMVD 607
A SF+ D
Sbjct: 693 RIGRTGRVGNSGRATSFISED 713
>SPBC776.09 [A] KOG0326 ATP-dependent RNA helicase
Length = 485
Score = 132 bits (333), Expect = 2e-30
Identities = 100/364 (27%), Positives = 163/364 (44%), Gaps = 22/364 (6%)
Query: 263 ELQFVTLTPIQCQAIPAIMSGRDVIGISKTGSGKTVAFLLPLVRQIKAQPPLAPDETGPI 322
E F +PIQ ++IP +SGRD++ +K G+GKT AF++P + ++ +
Sbjct: 61 EAGFERPSPIQEESIPIALSGRDILARAKNGTGKTAAFVIPSLEKVDTKKSKIQT----- 115
Query: 323 GLILTPTRELAVQIQEEALKFCKXXXXXXXXXXXXXELKQQINELKRGVDIIVATPGRFI 382
LIL PTRELA+Q + K L+ I L V I+V TPGR +
Sbjct: 116 -LILVPTRELALQTSQVCKTLGKHMNVKVMVTTGGTTLRDDIIRLNDTVHIVVGTPGRVL 174
Query: 383 DLMTLNSGHLLSPTRISFVVMDEADRLFDLGFGPQVNQIMGCIRPDKQCVLFSATFPSKL 442
DL T VMDEAD+L F P + Q++ ++Q L+SATFP +
Sbjct: 175 DLAGKGVADFSECTTF---VMDEADKLLSPEFTPIIEQLLSYFPKNRQISLYSATFPLIV 231
Query: 443 KHFASRTLKNPIQITINSKSLINENIQQRVQIFDEEHVKFEFLLKRLSDRLALHRGEDEK 502
K+F + L P +I + + + Q + + + V L L +L ++ +
Sbjct: 232 KNFMDKHLNKPYEINLMDELTLRGVTQYYAFVDESQKV---HCLNTLFSKLQIN-----Q 283
Query: 503 TIIFVGSQQXXXXXXXXXXXNGITTFPIHAGKPSAERLRNLQKFKETDNGILICTEVLSR 562
+IIF S G + F HA + R R F+ L+C+++L+R
Sbjct: 284 SIIFCNSTNRVELLAKKITELGYSCFYSHAKMLQSHRNRVFHNFRNGVCRNLVCSDLLTR 343
Query: 563 GLNVPEVSLVIIYNAAKTIAQYVHXXXXXXXXXXXXXALSFVMVDELASAYILVKCMKEN 622
G+++ V++VI ++ K Y+H A+SF+ + + Y + EN
Sbjct: 344 GIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHRGLAISFISWADRFNLYRI-----EN 398
Query: 623 ELSS 626
EL +
Sbjct: 399 ELGT 402
>Hs4503529 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 406
Score = 132 bits (333), Expect = 2e-30
Identities = 97/349 (27%), Positives = 168/349 (47%), Gaps = 22/349 (6%)
Query: 245 TKWSQLGLSSEIMDLISNELQ------FVTLTPIQCQAIPAIMSGRDVIGISKTGSGKTV 298
+ W+++ S + M+L + L+ F + IQ +AI + G DVI +++G+GKT
Sbjct: 25 SNWNEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTA 84
Query: 299 AFLLPLVRQIKAQPPLAPDETGPIGLILTPTRELAVQIQEEALKFCKXXXXXXXXXXXXX 358
F + +++QI+ D L+L PTRELA QIQ+ +
Sbjct: 85 TFAISILQQIEL------DLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGT 138
Query: 359 ELKQQINELK-RGVDIIVATPGRFIDLMTLNSGHLLSPTRISFVVMDEADRLFDLGFGPQ 417
++ ++ +L+ IIV TPGR D++ + LSP I V+DEAD + GF Q
Sbjct: 139 NVRAEVQKLQMEAPHIIVGTPGRVFDML---NRRYLSPKYIKMFVLDEADEMLSRGFKDQ 195
Query: 418 VNQIMGCIRPDKQCVLFSATFPSKLKHFASRTLKNPIQITINSKSLINENIQQRVQIFDE 477
+ I + + Q VL SAT PS + + +++PI+I + + L E I+Q +
Sbjct: 196 IYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVER 255
Query: 478 EHVKFEFLLKRLSDRLALHRGEDEKTIIFVGSQQXXXXXXXXXXXNGITTFPIHAGKPSA 537
E K + L L + L + + +IF+ +++ T +H
Sbjct: 256 EEWKLDTLCD-LYETLTI-----TQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQK 309
Query: 538 ERLRNLQKFKETDNGILICTEVLSRGLNVPEVSLVIIYNAAKTIAQYVH 586
ER +++F+ + +LI T++L+RG++V +VSLVI Y+ Y+H
Sbjct: 310 ERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIH 358
>At2g45810 [A] KOG0326 ATP-dependent RNA helicase
Length = 528
Score = 132 bits (333), Expect = 2e-30
Identities = 98/351 (27%), Positives = 160/351 (44%), Gaps = 17/351 (4%)
Query: 263 ELQFVTLTPIQCQAIPAIMSGRDVIGISKTGSGKTVAFLLPLVRQIKAQPPLAPDETGPI 322
E F +PIQ ++IP ++G D++ +K G+GKT AF +P + +I P+
Sbjct: 171 EKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPTLEKID------PENNVIQ 224
Query: 323 GLILTPTRELAVQIQEEALKFCKXXXXXXXXXXXXXELKQQINELKRGVDIIVATPGRFI 382
+IL PTRELA+Q + + K L+ I L + V ++V TPGR +
Sbjct: 225 AVILVPTRELALQTSQVCKELSKYLKIEVMVTTGGTSLRDDIMRLYQPVHLLVGTPGRIL 284
Query: 383 DLMTLNSGHLLSPTRISFVVMDEADRLFDLGFGPQVNQIMGCIRPDKQCVLFSATFPSKL 442
DL L + +VMDEAD+L + F P + +++ + +Q ++FSATFP +
Sbjct: 285 DLAKKGVCVLKD---CAMLVMDEADKLLSVEFQPSIEELIQFLPESRQILMFSATFPVTV 341
Query: 443 KHFASRTLKNPIQITINSKSLINENIQQRVQIFDEEHVKFEFLLKRLSDRLALHRGEDEK 502
K F R LK P I + + + Q F EE K L L +L ++ +
Sbjct: 342 KSFKDRYLKKPYIINLMDQLTLMGVTQ--YYAFVEERQKVH-CLNTLFSKLQIN-----Q 393
Query: 503 TIIFVGSQQXXXXXXXXXXXNGITTFPIHAGKPSAERLRNLQKFKETDNGILICTEVLSR 562
+IIF S G + F IHA R R F+ L+CT++ +R
Sbjct: 394 SIIFCNSVNRVELLAKKITELGYSCFYIHAKMVQDHRNRVFHDFRNGACRNLVCTDLFTR 453
Query: 563 GLNVPEVSLVIIYNAAKTIAQYVHXXXXXXXXXXXXXALSFVMVDELASAY 613
G+++ V++VI ++ +T Y+H A++ V ++ Y
Sbjct: 454 GIDIQAVNVVINFDFPRTSESYLHRVGRSGRFGHLGLAVNLVTYEDRFKMY 504
>7297048 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 389
Score = 132 bits (332), Expect = 2e-30
Identities = 90/337 (26%), Positives = 157/337 (45%), Gaps = 15/337 (4%)
Query: 272 IQCQAIPAIMSGRDVIGISKTGSGKTVAFLLPLVRQIKAQPPLAPDETGPIGLILTPTRE 331
IQ +AI + GRDVI +++G+GKT F + +++QI LIL PTRE
Sbjct: 42 IQQRAIIPCVRGRDVIAQAQSGTGKTATFSIAILQQIDTSIRECQ------ALILAPTRE 95
Query: 332 LAVQIQEEALKFCKXXXXXXXXXXXXXELKQQINELKRGVDIIVATPGRFIDLMTLNSGH 391
LA QIQ + + +++ L+ G ++V TPGR D++
Sbjct: 96 LATQIQRVVMALGEYMKVHSHACIGGTNVREDARILESGCHVVVGTPGRVYDMINRK--- 152
Query: 392 LLSPTRISFVVMDEADRLFDLGFGPQVNQIMGCIRPDKQCVLFSATFPSKLKHFASRTLK 451
+L I V+DEAD + GF Q+ + + PD Q +L SAT P + + ++
Sbjct: 153 VLRTQYIKLFVLDEADEMLSRGFKDQIQDVFKMLPPDVQVILLSATMPPDVLEVSRCFMR 212
Query: 452 NPIQITINSKSLINENIQQRVQIFDEEHVKFEFLLKRLSDRLALHRGEDEKTIIFVGSQQ 511
+P+ I + + L E I+Q +E+ K L L D L++ +++IF +++
Sbjct: 213 DPVSILVKKEELTLEGIKQFYVNVKQENWKLGTLCD-LYDTLSI-----TQSVIFCNTRR 266
Query: 512 XXXXXXXXXXXNGITTFPIHAGKPSAERLRNLQKFKETDNGILICTEVLSRGLNVPEVSL 571
+ T +H +R +++F+ + +LI T++L+RG++V +VSL
Sbjct: 267 KVDQLTQEMSIHNFTVSAMHGDMEQRDREVIMKQFRSGSSRVLITTDLLARGIDVQQVSL 326
Query: 572 VIIYNAAKTIAQYVHXXXXXXXXXXXXXALSFVMVDE 608
VI Y+ Y+H A++F+ D+
Sbjct: 327 VINYDLPSNRENYIHRIGRGGRFGRKGVAINFITDDD 363
>At3g61240 [A] KOG0326 ATP-dependent RNA helicase
Length = 498
Score = 132 bits (331), Expect = 3e-30
Identities = 97/351 (27%), Positives = 162/351 (45%), Gaps = 17/351 (4%)
Query: 263 ELQFVTLTPIQCQAIPAIMSGRDVIGISKTGSGKTVAFLLPLVRQIKAQPPLAPDETGPI 322
E F +PIQ ++IP ++G D++ +K G+GKT AF +P++ +I P+
Sbjct: 141 EKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPVLEKID------PNNNVIQ 194
Query: 323 GLILTPTRELAVQIQEEALKFCKXXXXXXXXXXXXXELKQQINELKRGVDIIVATPGRFI 382
+IL PTRELA+Q + + K L+ I L + V ++V TPGR +
Sbjct: 195 AMILVPTRELALQTSQVCKELSKYLNIQVMVTTGGTSLRDDIMRLHQPVHLLVGTPGRIL 254
Query: 383 DLMTLNSGHLLSPTRISFVVMDEADRLFDLGFGPQVNQIMGCIRPDKQCVLFSATFPSKL 442
DL L + +VMDEAD+L F P + +++ + ++Q ++FSATFP +
Sbjct: 255 DLTKKGVCVLKD---CAMLVMDEADKLLSAEFQPSLEELIQFLPQNRQFLMFSATFPVTV 311
Query: 443 KHFASRTLKNPIQITINSKSLINENIQQRVQIFDEEHVKFEFLLKRLSDRLALHRGEDEK 502
K F R L+ P I + + + Q F EE K L L +L ++ +
Sbjct: 312 KAFKDRHLRKPYVINLMDQLTLMGVTQ--YYAFVEERQKVH-CLNTLFSKLQIN-----Q 363
Query: 503 TIIFVGSQQXXXXXXXXXXXNGITTFPIHAGKPSAERLRNLQKFKETDNGILICTEVLSR 562
+IIF S G + F IHA R R +F+ L+CT++ +R
Sbjct: 364 SIIFCNSVNRVELLAKKITELGYSCFYIHAKMVQDHRNRVFHEFRNGACRNLVCTDLFTR 423
Query: 563 GLNVPEVSLVIIYNAAKTIAQYVHXXXXXXXXXXXXXALSFVMVDELASAY 613
G+++ V++VI ++ +T Y+H A++ V ++ Y
Sbjct: 424 GIDIQAVNVVINFDFPRTSESYLHRVGRSGRFGHLGLAVNLVTYEDRFKMY 474
>7293348 [A] KOG0348 ATP-dependent RNA helicase
Length = 975
Score = 132 bits (331), Expect = 3e-30
Identities = 88/261 (33%), Positives = 135/261 (51%), Gaps = 28/261 (10%)
Query: 215 LGLMSEKDVEELRLSLDNIKISGKDCPKPV-------TKWSQLGLSSEIMDLISNELQFV 267
+GL + DVE L K G+ KPV +K S LGL + + + L
Sbjct: 297 IGLFDQSDVEAL-------KQLGQRAVKPVKETIFTGSKISTLGLHPHAVKNLEDLLSIR 349
Query: 268 TLTPIQCQAIPAIMSGRDVIGISKTGSGKTVAFLLPLVRQIKAQPPLAPDETGPIGLILT 327
LT +Q + IP ++ G+DV+ S+TGSGKT+A+ LPLV ++ Q P + G + L++
Sbjct: 350 ELTSVQQKTIPEVLQGKDVLVRSQTGSGKTLAYALPLVELLQKQQPRIQRKDGVLALVIV 409
Query: 328 PTRELAVQIQEEALKFCKXXXXXXXXXXXXXE-LKQQINELKRGVDIIVATPGRFIDLMT 386
PTREL +Q E K K E K + L++G++I++ TPGR +D +
Sbjct: 410 PTRELVMQTYELIQKLVKPYTWIVPGSLLGGESRKSEKARLRKGINILIGTPGRLVDHLL 469
Query: 387 LNSGHLLSPTRISFVVMDEADRLFDLGFGPQVNQIMGCI-----------RPDKQCVLFS 435
+ L T++ F+++DEADRL +LG+ V Q++ I P Q +L S
Sbjct: 470 HTASFKL--TKLQFLILDEADRLLELGYERDVKQLVEAIDKQRAECEDKELPQLQRMLLS 527
Query: 436 ATFPSKLKHFASRTLKNPIQI 456
AT S+++ A TLKNP+ I
Sbjct: 528 ATLTSQVQQLAGLTLKNPLYI 548
>CE11402 [A] KOG0334 RNA helicase
Length = 995
Score = 131 bits (330), Expect = 4e-30
Identities = 100/355 (28%), Positives = 169/355 (47%), Gaps = 34/355 (9%)
Query: 244 VTKWSQLGLSSEIMDLISNELQFVTLTPIQCQAIPAIMSGRDVIGISKTGSGKTVAFLLP 303
+T W+ GL I++ + +++ + IQ IP ++ G DV+G ++T +GKT AF LP
Sbjct: 380 LTSWTNSGLHPTILETLKR-IKYNNVRTIQGAMIPQVLDGHDVLGQAETSAGKTAAFGLP 438
Query: 304 LVRQIKAQPP----LAPDETGPIGLILTPTRELAVQIQEEALKFCKXXXXXXXXXXXXXE 359
++ +I A + GP+ LIL PTRELA QI E +C+ +
Sbjct: 439 IIDKILRMDEETRNKARQDDGPLALILAPTRELAAQIHEALRTYCQNTDIIVLLSYGQSD 498
Query: 360 LKQQINELKRGVDIIVATPGRFIDLMTLNSGHLLSPTRISFVVMDEADRLF-DLGFGPQV 418
+ +NE++ G DI++ T GR +D + LL + F+V DEADRL D+ P
Sbjct: 499 RARSLNEIRNGCDILIGTCGRIMDFTVKSHISLL---HLRFLVFDEADRLLQDMKKDPLG 555
Query: 419 NQIMGCIRPD---------KQCVLFSATFPSKLKHFASRTLKN-PIQITINSKSLINENI 468
+ +G I D +Q ++ SATF + + A+ +K P Q + L N +
Sbjct: 556 H--LGAIIKDAGFMESAATRQTIMTSATFNASVMTVANELMKRLPGQDEMIKIVLANGRL 613
Query: 469 QQRVQI-------FDEEHVKFEFLLKRLSDRLALHRGEDEKTIIFVGSQQXXXXXXXXXX 521
+RV + E++ K +LK+ + G+ KTIIFV +
Sbjct: 614 SKRVNLEFFECKGLAEKNAKLREILKQNVN------GKTLKTIIFVQKKDQCDACAAKLT 667
Query: 522 XNGITTFPIHAGKPSAERLRNLQKFKETDNGILICTEVLSRGLNVPEVSLVIIYN 576
G+ +H + R + + FK +L+ T++LSRG++V ++ VI ++
Sbjct: 668 SGGMLAQTLHGDRSQDMREKLINDFKSNRVNLLVTTDLLSRGIDVSDLDRVINFD 722
>At1g63250 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 798
Score = 131 bits (329), Expect = 5e-30
Identities = 98/325 (30%), Positives = 151/325 (46%), Gaps = 9/325 (2%)
Query: 269 LTPIQCQAIPAIMSGRDVIGISKTGSGKTVAFLLPLVRQI--KAQPPLAPDETGPI-GLI 325
+T +Q + + G+D + +KTG+GK++AFLLP + + ++ PI LI
Sbjct: 351 MTRVQDATLSECLDGKDALVKAKTGTGKSMAFLLPAIETVLKAMNSGKGVNKVAPIFALI 410
Query: 326 LTPTRELAVQIQEEA---LKFCKXXXXXXXXXXXXXELKQQINELKRGVDIIVATPGRFI 382
L PTRELA QI E LKF +L QQ E I++ATPGR +
Sbjct: 411 LCPTRELASQIAAEGKALLKFHDGIGVQTLIGGTRFKLDQQRLE-SEPCQILIATPGRLL 469
Query: 383 DLMTLNSGHLLSPTRISFVVMDEADRLFDLGFGPQVNQIMGCIRPDKQCVLFSATFPSKL 442
D + SG + ++DEAD L DLGF V +I+ C+ +Q +LFSAT P ++
Sbjct: 470 DHIENKSGLTSRLMALKLFIVDEADLLLDLGFRRDVEKIIDCLPRQRQSLLFSATIPKEV 529
Query: 443 KHFASRTLK-NPIQITINSKSLINENIQQRVQIFDEEHVKFEFLLKRLSDRLALHRGEDE 501
+ + LK + I + + + R H L+ L + ++ D
Sbjct: 530 RRVSQLVLKRDHSYIDTIGLGCVETHDKVRQSCIVAPHESHFHLVPHLL-KEHINNTPDY 588
Query: 502 KTIIFVGSQQXXXXXXXXXXXNGITTFPIHAGKPSAERLRNLQKFKETDNGILICTEVLS 561
K I+F + + IHA KP R R +FKE++ IL+ ++V +
Sbjct: 589 KIIVFCSTGMVTSLMYTLLREMKLNVREIHARKPQLHRTRVSDEFKESNRLILVTSDVSA 648
Query: 562 RGLNVPEVSLVIIYNAAKTIAQYVH 586
RG+N P+V+LVI QY+H
Sbjct: 649 RGMNYPDVTLVIQVGIPSDREQYIH 673
>Hs4758140 [A] KOG0326 ATP-dependent RNA helicase
Length = 472
Score = 130 bits (328), Expect = 6e-30
Identities = 87/340 (25%), Positives = 162/340 (47%), Gaps = 18/340 (5%)
Query: 270 TPIQCQAIPAIMSGRDVIGISKTGSGKTVAFLLPLVRQIKAQPPLAPDETGPIGLILTPT 329
+PIQ ++IP +SGRD++ +K G+GK+ A+L+PL+ ++ + + +++ PT
Sbjct: 109 SPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLK------KDNIQAMVIVPT 162
Query: 330 RELAVQIQEEALKFCKXXXXXXXXXXXX-XELKQQINELKRGVDIIVATPGRFIDLMTLN 388
RELA+Q+ + ++ K L+ I L V +++ATPGR +DL+
Sbjct: 163 RELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKG 222
Query: 389 SGHLLSPTRISFVVMDEADRLFDLGFGPQVNQIMGCIRPDKQCVLFSATFPSKLKHFASR 448
+ + +V+DEAD+L F + I+ + ++Q +L+SATFP ++ F +
Sbjct: 223 VAKV---DHVQMIVLDEADKLLSQDFVQIMEDIILTLPKNRQILLYSATFPLSVQKFMNS 279
Query: 449 TLKNPIQITINSKSLINENIQQRVQIFDEEHVKFEFLLKRLSDRLALHRGEDEKTIIFVG 508
L+ P +I + + + Q + + + V L L RL +++ +IIF
Sbjct: 280 HLQKPYEINLMEELTLKGVTQYYAYVTERQKVH---CLNTLFSRLQINQ-----SIIFCN 331
Query: 509 SQQXXXXXXXXXXXNGITTFPIHAGKPSAERLRNLQKFKETDNGILICTEVLSRGLNVPE 568
S Q G + F IHA R R F+ L+CT++ +RG+++
Sbjct: 332 SSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLVCTDLFTRGIDIQA 391
Query: 569 VSLVIIYNAAKTIAQYVHXXXXXXXXXXXXXALSFVMVDE 608
V++VI ++ K Y+H A++ + D+
Sbjct: 392 VNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLITYDD 431
>7303950 [A] KOG0340 ATP-dependent RNA helicase
Length = 521
Score = 130 bits (327), Expect = 8e-30
Identities = 94/321 (29%), Positives = 153/321 (47%), Gaps = 18/321 (5%)
Query: 270 TPIQCQAIPAIMSGRDVIGISKTGSGKTVAFLLPLVRQIKAQPPLAPDETGPIGLILTPT 329
TPIQ + IPAI++G+D IG +KTGSGKT AF LP++ ++ +P L+LTPT
Sbjct: 31 TPIQQKCIPAILAGQDCIGAAKTGSGKTFAFALPILERLSEEP------VSHFALVLTPT 84
Query: 330 RELAVQIQEEALKFCKXXXXXXXXXXXXXELKQQINELKRGVDIIVATPGRFIDLMTLNS 389
ELA QI E+ L + + + +L + I+VA PGR D +T
Sbjct: 85 HELAYQISEQFLVAGQAMGVRVCVVSGGTDQMVESQKLMQRPHIVVAMPGRLADHLT--G 142
Query: 390 GHLLSPTRISFVVMDEADRLFDLGFGPQVNQIMGCIRPDKQCVLFSATFPSKLKHFASRT 449
S + ++V+DEADR+ + F ++ I C+ +Q + FSAT +K +
Sbjct: 143 CDTFSFDNLKYLVVDEADRMLNGDFDESLSIIERCLPKTRQNLFFSATMKDFIKESSIFP 202
Query: 450 LKNP-IQITINSKSLINENIQQRVQI---FDEEHVKFEFLLKRLSDRLALHRGEDEKTII 505
+ + + + +S E + QR + +D + V E L K + E+ +I
Sbjct: 203 IASDCFEWSQDSDVATVETLDQRYLLCADYDRDMVLIEALRKYREE------NENANVMI 256
Query: 506 FVGSQQXXXXXXXXXXXNGITTFPIHAGKPSAERLRNLQKFKETDNGILICTEVLSRGLN 565
F +++ I +H ER+ L +FK LI T+V +RGL+
Sbjct: 257 FTNTKKYCQLLSMTLKNMEIDNVCLHGFMRQKERVAALSRFKSNQIRTLIATDVAARGLD 316
Query: 566 VPEVSLVIIYNAAKTIAQYVH 586
+P V LV+ + +T +Y+H
Sbjct: 317 IPSVELVMNHMLPRTPKEYIH 337
>CE25231 [A] KOG0343 RNA Helicase
Length = 732
Score = 130 bits (326), Expect = 1e-29
Identities = 94/321 (29%), Positives = 158/321 (48%), Gaps = 16/321 (4%)
Query: 270 TPIQCQAIPAIMSGRDVIGISKTGSGKTVAFLLPLVRQIKAQPPLAPDETGPIGLILTPT 329
T IQ I ++G DV+G +KTGSGKT+A ++P++ + + +PD G LI++PT
Sbjct: 100 TEIQRDTIAYSLTGSDVVGAAKTGSGKTLALVIPVLEALW-RAKWSPDY-GLGALIISPT 157
Query: 330 RELAVQIQEEALKFCKXXXXXXXXXXXXXELKQQINELKRGVDIIVATPGRFIDLMTLNS 389
RELA+Q ++ + N + G++IIV TPGR + M N+
Sbjct: 158 RELALQTFSTINAVGAHHGFSCGLVIGGSDVAFERNRIS-GINIIVCTPGRLLQHMDENA 216
Query: 390 GHLLSPTRISFVVMDEADRLFDLGFGPQVNQIMGCIRPDKQCVLFSATFPSKLKHFASRT 449
+S + +V+DEADR+ D+GF Q+N I+ + ++Q +LFSAT +K
Sbjct: 217 Q--MSCDSLQVLVLDEADRMLDMGFSKQLNSIINNLPAERQTLLFSATQTRNVKDLCRVC 274
Query: 450 LKNPIQITI--NSKSLINENIQQRVQIFDEEHVKFEFLLKRLSDRLALHRGEDEKTIIFV 507
+P+ +++ N+ + +N++Q I +EEH + L + HR +K+++FV
Sbjct: 275 TNDPVFVSVHENASAATPDNLKQSYVIVEEEH-----KINALWSFIEAHR--KKKSLVFV 327
Query: 508 GS--QQXXXXXXXXXXXNGITTFPIHAGKPSAERLRNLQKFKETDNGILICTEVLSRGLN 565
S Q G+ + +R+ KF E+ +LI T+V SRGL+
Sbjct: 328 SSCKQARFLTEAFSQLRPGLPVMGLWGTMNQKKRIETFTKFDESKAAVLIATDVASRGLD 387
Query: 566 VPEVSLVIIYNAAKTIAQYVH 586
+ VI + I Y+H
Sbjct: 388 FEHIDWVIQVDCPAQIDDYIH 408
>At5g54910 [A] KOG0343 RNA Helicase
Length = 739
Score = 129 bits (324), Expect = 2e-29
Identities = 112/428 (26%), Positives = 211/428 (49%), Gaps = 43/428 (10%)
Query: 244 VTKWSQLGLSSEIMDLISNELQFVTLTPIQCQAIPAIMSGRDVIGISKTGSGKTVAFLLP 303
V K++QL +S + + + ++V +T +Q AIP + GRD++G ++TGSGKT+AF++P
Sbjct: 70 VRKFAQLPISDKTKRGLK-DAKYVDMTDVQSAAIPHALCGRDILGAARTGSGKTLAFVIP 128
Query: 304 LVRQIKAQPPLAPDETGPIGLILTPTRELAVQ---IQEEALKFCKXXXXXXXXXXXXXEL 360
++ ++ + D G I I++PTRELA Q + + KF K ++
Sbjct: 129 ILEKLHRERWSPEDGVGCI--IISPTRELAAQTFGVLNKVGKFHKFSAGLLIGGREGVDV 186
Query: 361 -KQQINELKRGVDIIVATPGRFIDLMTLNSGHLLSPTRISFVVMDEADRLFDLGFGPQVN 419
K++++E+ +I+V PGR + M ++ +++DEADR+ D F Q++
Sbjct: 187 EKERVHEM----NILVCAPGRLLQHMDETPN--FECPQLQILILDEADRVLDSAFKGQLD 240
Query: 420 QIMGCIRPDKQCVLFSATFPSKLKHFASRTLKNPIQITINSKSL--INENIQQRVQIFDE 477
I+ + +Q +LFSAT K+K A +L++P I+++++++ ++ Q V I
Sbjct: 241 PIISQLPKHRQTLLFSATQTKKVKDLARLSLRDPEYISVHAEAVTATPTSLMQTVMIVPV 300
Query: 478 EHVKFEFLLKRLSDRLALHRGEDEKTIIFVGS--QQXXXXXXXXXXXNGITTFPIHAGKP 535
E K + L + L + + ++F+ + Q GI +H
Sbjct: 301 EK-KLDMLWSFIKTHL------NSRILVFLSTKKQVKFVHEAFNKLRPGIPLKSLHGKMS 353
Query: 536 SAERLRNLQKFKETDNGILICTEVLSRGLNVPE-VSLVIIYNAAKTIAQYVHXXXXXXXX 594
+R+ +F E + +L CT+VL+RGL+ + V V+ + + +A Y+H
Sbjct: 354 QEKRMGVYSQFIERQS-VLFCTDVLARGLDFDKAVDWVVQVDCPEDVASYIHRVGRTARF 412
Query: 595 XXXXXALSFV------MVDELASAYILVKCMKENELSSVPMVVYQKLKEMNDEFSSGLKT 648
+L F+ M+++L A + +K +K N QKL+E++ ++ L
Sbjct: 413 YTQGKSLLFLTPSEEKMIEKLQEAKVPIKLIKANN---------QKLQEVSRLLAALLV- 462
Query: 649 GKYRLIQG 656
KY +QG
Sbjct: 463 -KYPDLQG 469
>At4g09730 [A] KOG0331 ATP-dependent RNA helicase
Length = 496
Score = 128 bits (322), Expect = 3e-29
Identities = 105/360 (29%), Positives = 176/360 (48%), Gaps = 25/360 (6%)
Query: 238 KDCPKPVTKWSQLGLSSEIMDLISNELQFVTLTPIQCQAIPAIMSGRDVIGISKTGSGKT 297
K K V + +LGLS E+M + EL T IQC IPA+M + V+ S TGSGKT
Sbjct: 105 KKSKKLVENFQELGLSEEVMGALQ-ELNIEVPTEIQCIGIPAVMERKSVVLGSHTGSGKT 163
Query: 298 VAFLLPLV-------RQIKAQPPLAPDETGPIGLILTPTRELAVQIQEEALKFCKXXXXX 350
+A+LLP+V R+ +A P ++L PTREL+ Q+ +
Sbjct: 164 LAYLLPIVQVLSELMREDEANLGKKTKPRRPRTVVLCPTRELSEQVCLH--QDYHHARFR 221
Query: 351 XXXXXXXXELKQQINELKRGVDIIVATPGRFIDLMTLNSGHLLSPTRISFVVMDEADRLF 410
++ Q + L +D++V TPGR L + G+++ I+++V+DEAD +F
Sbjct: 222 SILVSGGSRIRPQEDSLNNAIDMVVGTPGRI--LQHIEEGNMVYGD-IAYLVLDEADTMF 278
Query: 411 DLGFGPQVNQIMGCIRPDKQCVLFSATFPS--KLKHFASRTLKNPIQITINSKSLINENI 468
D GFGP++ + + + + V +F + KL + +++ T++ K I
Sbjct: 279 DRGFGPEIRKFLAPLNQHIKVVNEIVSFQAVQKLVDEEFQGIEHLRTSTLHKK--IANAR 336
Query: 469 QQRVQIFDEEHVKFEFLLKRLSDRLALHRGEDEKTIIFVGSQQXXXXXXXXXXXNGITTF 528
+++ E K E LL+ L LA + K ++F + N I+T
Sbjct: 337 HDFIKLSGGED-KLEALLQVLEPSLA----KGSKVMVFCNTLNSSRAVDHYLSENQISTV 391
Query: 529 PIHAGKPSAERLRNLQKFK--ETDNGILICTEVLSRGLNVPEVSLVIIYNAAKTIAQYVH 586
H P+ +R+ NL+KFK E D L+CT++ +RGL++ +V V++++ K Y+H
Sbjct: 392 NYHGEVPAEQRVENLKKFKDEEGDCPTLVCTDLAARGLDL-DVDHVVMFDFPKNSIDYLH 450
>Hs8922976 [A] KOG0330 ATP-dependent RNA helicase
Length = 540
Score = 127 bits (320), Expect = 5e-29
Identities = 103/369 (27%), Positives = 167/369 (44%), Gaps = 42/369 (11%)
Query: 247 WSQLGLSSEIMDLISNEL-QFVTLTPIQCQAIPAIMSGRDVIGISKTGSGKTVAFLLPLV 305
++ LGL ++ + + V T +Q IP+++ GR V+ ++TGSGKT+++LLPL+
Sbjct: 128 FADLGLEPRVLHALQEAAPEVVQPTTVQSSTIPSLLRGRHVVCAAETGSGKTLSYLLPLL 187
Query: 306 RQIKAQPPL-APDETGPIGLILTPTRELAVQIQEEALKFCKXXXXXXXXXXXXXELKQQI 364
+++ QP L + P GL+L P+RELA Q++ A + +++
Sbjct: 188 QRLLGQPSLDSLPIPAPRGLVLVPSRELAQQVRAVAQPLGRSLGLLVRDLEGGHGMRRIR 247
Query: 365 NELKR--GVDIIVATPGRFIDLMTLNSGHLLSPTRISFVVMDEADRLFDLGFGPQVNQIM 422
+L R D++VATPG L L+S ++SF+V+DEAD L D F V+ I+
Sbjct: 248 LQLSRQPSADVLVATPGA---LWKALKSRLISLEQLSFLVLDEADTLLDESFLELVDYIL 304
Query: 423 -------------GCIRPDKQCVLFSATFPSKLKHFASRTLKNPIQITINSKSLINENIQ 469
P Q VL ATFP + ++ TI S L
Sbjct: 305 EKSHIAEGPADLEDPFNPKAQLVLVGATFPEGVGQLLNKVASPDAVTTITSSKL------ 358
Query: 470 QRVQIFDEEHVKFEFLLKRLSDRLA------LHRGEDEKT------IIFVGSQQXXXXXX 517
HVK FL + +D++A HR E+T ++F S
Sbjct: 359 ----HCIMPHVKQTFLRLKGADKVAELVHILKHRDRAERTGPSGTVLVFCNSSSTVNWLG 414
Query: 518 XXXXXNGITTFPIHAGKPSAERLRNLQKFKETDNGILICTEVLSRGLNVPEVSLVIIYNA 577
+ I + P+ R+ Q F+++ IL+CT++ SRGL+ V LV+ Y+
Sbjct: 415 YILDDHKIQHLRLQGQMPALMRVGIFQSFQKSSRDILLCTDIASRGLDSTGVELVVNYDF 474
Query: 578 AKTIAQYVH 586
T+ Y+H
Sbjct: 475 PPTLQDYIH 483
>Hs20336298 [A] KOG0348 ATP-dependent RNA helicase
Length = 585
Score = 127 bits (319), Expect = 7e-29
Identities = 92/357 (25%), Positives = 163/357 (44%), Gaps = 53/357 (14%)
Query: 249 QLGLSSEIMDLISNELQFVTLTPIQCQAIPAIMSGRDVIGISKTGSGKTVAFLLPLVRQI 308
+LGL ++ I+ L+ ++T +Q Q+IP ++ GRD + S+TGSGKT+A+ +P+V+ +
Sbjct: 234 ELGLHPHLISTINTVLKMSSMTSVQKQSIPVLLEGRDALVRSQTGSGKTLAYCIPVVQSL 293
Query: 309 KAQPPLAPDETGPIGLILTPTRELAVQIQEEALKFCKXXXXXXXXXXXXXE-LKQQINEL 367
+A GP L+L PTRELA+Q + K K E K + L
Sbjct: 294 QAMESKIQRSDGPYALVLVPTRELALQSFDTVQKLLKPFTWIVPGVLMGGEKRKSEKARL 353
Query: 368 KRGVDIIVATPGRFIDLMTLNSGHLLSPTRISFVVMDEADRLFDLGFGPQVNQIMGCIRP 427
++G++I+++TPGR +D + S + +R+ ++V DEADR+ DLGF + I+ +
Sbjct: 354 RKGINILISTPGRLVD--HIKSTKNIHFSRLRWLVFDEADRILDLGFEKDITVILNAVNA 411
Query: 428 D---KQCVLFSATFPSKLKHFASRTLKNPIQITINSKS---------------------- 462
+ +Q VL SAT + A +L +P+ I++ KS
Sbjct: 412 ECQKRQNVLLSATLTEGVTRLADISLHDPVSISVLDKSHDQLNPKDKAVQEVCPPPAGDK 471
Query: 463 ----LINENIQQRVQIFDEEHVKFEFLLKRLSDRLALHRGEDEKTIIFVGSQQXXXXXXX 518
I E+++Q V + + ++ L + + ED+K ++F S +
Sbjct: 472 LDSFAIPESLKQHVTVVPSK-LRLVCLAAFILQKCKFE--EDQKMVVFFSSCELVEFHYS 528
Query: 519 XXXXNGITT------------------FPIHAGKPSAERLRNLQKFKETDNGILICT 557
+++ +H G ER Q+F + G+L+CT
Sbjct: 529 LFLQTLLSSSGAPASGQLPSASMRLKFLRLHGGMEQEERTAVFQEFSHSRRGVLLCT 585
>ECU10g0440 [A] KOG0330 ATP-dependent RNA helicase
Length = 400
Score = 127 bits (319), Expect = 7e-29
Identities = 90/335 (26%), Positives = 146/335 (42%), Gaps = 16/335 (4%)
Query: 270 TPIQCQAIPAIMSGRDVIGISKTGSGKTVAFLLPLVRQIKAQPPLAPDETGPIGLILTPT 329
T +Q Q IPA++ G DVI +S+TGSGKT+AF+LP+V L L++ PT
Sbjct: 25 TEVQRQVIPAVLGGGDVIAVSQTGSGKTLAFVLPIVSH------LLQKNRSFYCLVVAPT 78
Query: 330 RELAVQIQEEALKFCKXXXXXXXXXXXXXELKQQINELKRGVDIIVATPGRFIDLMTLNS 389
REL+ QI E + Q N+L + ++V TPGR + +
Sbjct: 79 RELSSQI-AECFNMFQATGLRVCLLVGGANFNVQANQLSKRPHVVVGTPGRIAEHVLKTK 137
Query: 390 GHLLSPTRISFVVMDEADRLFDLGFGPQVNQIMGCIRPDKQCVLFSATFPSKLKHFASRT 449
R+ V+DEADR F+ F + I+ +R +Q +LF+AT ++ +S
Sbjct: 138 S--FRTERVRKFVLDEADRFFEQDFVEDLETIIPSLREKRQTLLFTATMSDEISKLSSSI 195
Query: 450 LKNPIQITINSKSLINENIQQRVQIFDEEHVKFEFLLKRLSDRLALHRGEDEKTIIFVGS 509
LK P K++ + V E ++ K + L + I+FV
Sbjct: 196 LKRP-------KTIRTAEKYETVPALKEYYLFVAMKWKNSALVELLEMSQGMSVIVFVSM 248
Query: 510 QQXXXXXXXXXXXNGITTFPIHAGKPSAERLRNLQKFKETDNGILICTEVLSRGLNVPEV 569
G + +H +R ++ FKE+ +L+CT++ SRGL++ V
Sbjct: 249 CVTARVMSLALARLGFCSEALHGELSQEKREEAMRSFKESRFNVLVCTDLGSRGLDISHV 308
Query: 570 SLVIIYNAAKTIAQYVHXXXXXXXXXXXXXALSFV 604
LVI ++ K+ Y+H A++ V
Sbjct: 309 DLVINFDVPKSGKDYIHRVGRTARAGRSGTAITLV 343
>CE11190 [A] KOG0347 RNA helicase
Length = 746
Score = 127 bits (319), Expect = 7e-29
Identities = 112/428 (26%), Positives = 196/428 (45%), Gaps = 37/428 (8%)
Query: 234 KISGKDCPKP--VTKWSQLG-LSSEIMDLISNELQFVTLTPIQCQAIPAIMSGR-DVIGI 289
K S K+ K ++ W Q L +E+++ I ++ F T IQ +PA + R DV+G
Sbjct: 141 KKSKKEASKKTDISAWKQFYFLPNEVLEAIE-QMGFSEPTEIQSAVLPAAVRDRQDVLGA 199
Query: 290 SKTGSGKTVAFLLPLVRQI-----KAQPPLAPDETGPIGLILTPTRELAVQIQEEALKFC 344
++TGSGKT+AF +PLV ++ +Q + + GP LI+ PTREL +QI +
Sbjct: 200 AETGSGKTLAFGIPLVARLLESSDDSQETESTEVRGPRALIVAPTRELVIQIMKHINALI 259
Query: 345 KXXXXXXXXXXXX-XELKQQINELKRGVDIIVATPGRFIDLMT-LNSGHLLSPTR-ISFV 401
++KQ+ ++ DI+VATPGR +M +G L+ + + +
Sbjct: 260 STTQLIATSIVGGLAQVKQERIISQQRPDIVVATPGRLWAMMQEAETGEFLAEWKDLKCL 319
Query: 402 VMDEADRLFDLGFGPQVNQIMGCIRPDK-----QCVLFSATFP-SKLKHFASRTLKNPIQ 455
V+DE DR+ + G+ ++ I+ I + Q ++FSAT +K + A K +
Sbjct: 320 VVDETDRMVEEGYFAELTHILNKIHEESEKEKLQTLVFSATLTFAKAQDVAEEEKKKAKE 379
Query: 456 ITINSK-------SLINENIQQRVQI---------FDEEHVKFEFLLKRLSDRLALHRGE 499
++ K + + EN + + + E + LL++ + + L
Sbjct: 380 LSSQQKIQRLIKLTGLRENKHKVIDLTRQMGTAGCLVEARINCGNLLEKDTSLVYLLTRY 439
Query: 500 DEKTIIFVGSQQXXXXXXXXXXXNGITTFPIHAGKPSAERLRNLQKFKETDNGILICTEV 559
+TI+FV S I +HA +RL+NL+KF E+ N +L+ T+V
Sbjct: 440 PGRTIVFVNSIDAARRLYSVLKSVNIDPMILHAKMIQKQRLKNLEKFSESKNAVLLATDV 499
Query: 560 LSRGLNVPEVSLVIIYNAAKTIAQYVHXXXXXXXXXXXXXALSFVMVDELASAYILVKCM 619
+RGL++ + VI Y K + Y+H L+ V+VD + + + C
Sbjct: 500 AARGLDIQGIDHVIHYQVPKKVEIYIH--RSGRTARASHRGLTVVLVDPPSRQFYMKLCK 557
Query: 620 KENELSSV 627
N + +
Sbjct: 558 GLNRMQDL 565
>At1g71280 [A] KOG0345 ATP-dependent RNA helicase
Length = 465
Score = 127 bits (319), Expect = 7e-29
Identities = 97/329 (29%), Positives = 154/329 (46%), Gaps = 52/329 (15%)
Query: 252 LSSEIMDLISNELQFVTLTPIQCQAIPAIMSGRDVIGISKTGSGKTVAFLLPLVRQIKAQ 311
LS +I++ + F TP+Q + IP + S +DV+ + TGSGKT+AFLLP + I+
Sbjct: 24 LSEDIIEALDRS-GFEVCTPVQAETIPFLCSHKDVVVDAATGSGKTLAFLLPFIEIIRRS 82
Query: 312 PPLAPDETGPIGLILTPTRELAVQIQEEA----LKFCKXXXXXXXXXXXXXELKQQINEL 367
P +G+I++PTREL+ QI + A L F K E++ +N L
Sbjct: 83 NSYPPKPHQVMGVIISPTRELSAQIHKVARAVRLDFAK-----------CREVEADMNTL 131
Query: 368 -KRGVDIIVATPGRFIDLMTLNSGHLLSPTRISFVVMDEADRLFDLGFGPQVNQIMGCIR 426
+ G ++++ TPGR D+M L + +++DEADRL D+GF QVN I+ +
Sbjct: 132 EEEGANLLIGTPGRLSDMM--KRMEFLDFRNLEILILDEADRLLDMGFQKQVNYIISRLP 189
Query: 427 PDKQCVLFSATFPSKLKHFASRTLKNP-IQITINSKS-----LINENIQQRVQIFDEEHV 480
++ LFSAT + A L+NP ++ + KS L+ EN +++ +F
Sbjct: 190 KQRRTGLFSATQTQAVADLAKAGLRNPYLKCEADQKSSQLVHLLIENKNKKLVVF----- 244
Query: 481 KFEFLLKRLSDRLALHRGEDEKTIIFVGSQQXXXXXXXXXXXNGITTFPIHAGKPSAERL 540
F+ D L I+ FP H R
Sbjct: 245 ---FMTCACVDYWGL-------------------VISKIPSLKSISFFPTHGKMDQKGRD 282
Query: 541 RNLQKFKETDNGILICTEVLSRGLNVPEV 569
L F E +G+L+CT+V +RGL++P +
Sbjct: 283 TALASFTEASSGVLLCTDVAARGLDIPGI 311
>SPAC1006.07 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 392
Score = 127 bits (318), Expect = 9e-29
Identities = 90/338 (26%), Positives = 157/338 (45%), Gaps = 15/338 (4%)
Query: 272 IQCQAIPAIMSGRDVIGISKTGSGKTVAFLLPLVRQIKAQPPLAPDETGPIGLILTPTRE 331
IQ +AI I+ RDV+ +++G+GKT F + ++++I LIL PTRE
Sbjct: 45 IQQRAIMPILGERDVLAQAQSGTGKTATFSISVLQKIDTSLKQCQ------ALILAPTRE 98
Query: 332 LAVQIQEEALKFCKXXXXXXXXXXXXXELKQQINELKRGVDIIVATPGRFIDLMTLNSGH 391
LA QIQ+ + ++ + L+ GV ++V TPGR D++ +
Sbjct: 99 LAQQIQKVVVALGDLMNVECHACIGGTLVRDDMAALQAGVHVVVGTPGRVHDMIQRRA-- 156
Query: 392 LLSPTRISFVVMDEADRLFDLGFGPQVNQIMGCIRPDKQCVLFSATFPSKLKHFASRTLK 451
L + V+DEAD + GF Q+ I + P Q VL SAT P + ++ ++
Sbjct: 157 -LPTDAVQMFVLDEADEMLSRGFKDQIYDIFQLLPPTAQVVLLSATMPQDVLEVTTKFMR 215
Query: 452 NPIQITINSKSLINENIQQRVQIFDEEHVKFEFLLKRLSDRLALHRGEDEKTIIFVGSQQ 511
+PI+I + L E I+Q ++E K + L L + + + + +IF +++
Sbjct: 216 DPIRILVKKDELTLEGIKQFYVAVEKEEWKLDTLCD-LYETVTV-----TQAVIFCNTRR 269
Query: 512 XXXXXXXXXXXNGITTFPIHAGKPSAERLRNLQKFKETDNGILICTEVLSRGLNVPEVSL 571
T +H A+R + +F+ + ILI T++L+RG++V +VSL
Sbjct: 270 KVDWLTEQLTERDFTVSSMHGDMDQAQRDTLMHEFRTGSSRILITTDLLARGIDVQQVSL 329
Query: 572 VIIYNAAKTIAQYVHXXXXXXXXXXXXXALSFVMVDEL 609
VI Y+ Y+H +++FV D++
Sbjct: 330 VINYDLPANRENYIHRIGRGGRFGRKGVSINFVTNDDV 367
>Hs13129006 [A] KOG0331 ATP-dependent RNA helicase
Length = 737
Score = 127 bits (318), Expect = 9e-29
Identities = 93/347 (26%), Positives = 164/347 (46%), Gaps = 18/347 (5%)
Query: 247 WSQLGLSSEIMDLISNELQFVTLTPIQCQAIPAIMSGRDVIGISKTGSGKTVAFLLPLVR 306
+S +S E + L+ L PIQ + + G+D+I ++TG+GKT +F +PL+
Sbjct: 139 FSNFPISEETIKLLKGR-GVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIE 197
Query: 307 QIKAQPPLAPDETGPIGLILTPTRELAVQIQEEALKFCKXXXXXXXXXXXXXELKQQINE 366
+++ P L+L PTRELA Q+ ++ + + QIN
Sbjct: 198 RLQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITRKLSVACFYGGTSYQ--SQINH 255
Query: 367 LKRGVDIIVATPGRFIDLMTLNSGHLLSPTRISFVVMDEADRLFDLGFGPQVNQIM---- 422
++ G+DI+V TPGR D L SG L +++ VV+DE D++ DLGF QV I+
Sbjct: 256 IRNGIDILVGTPGRIKD--HLQSGR-LDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESY 312
Query: 423 -GCIRPDKQCVLFSATFPSKLKHFASRTLKNPIQITINSKSLINENIQQRVQIFDEEHVK 481
+ Q +LFSAT P + A + +K+ + L+ + Q+ + ++
Sbjct: 313 KTDSEDNPQTLLFSATCPQWVYKVAKKYMKSRYE----QVDLVGKMTQKAATTVEHLAIQ 368
Query: 482 FEFLLKR--LSDRLALHRGEDEKTIIFVGSQQXXXXXXXXXXXNGITTFPIHAGKPSAER 539
+ + + D L ++ G + + IIF +++ +H ++R
Sbjct: 369 CHWSQRPAVIGDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHIKQ-NAQCLHGDIAQSQR 427
Query: 540 LRNLQKFKETDNGILICTEVLSRGLNVPEVSLVIIYNAAKTIAQYVH 586
L+ F+E +L+ T V +RGL++PEV LVI + + + Y+H
Sbjct: 428 EITLKGFREGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIH 474
>YOR046c [A] KOG0332 ATP-dependent RNA helicase
Length = 482
Score = 126 bits (317), Expect = 1e-28
Identities = 107/392 (27%), Positives = 184/392 (46%), Gaps = 35/392 (8%)
Query: 225 ELRLSLDNIKISGKDCPKPVTKWSQLGLSSEIMDLISNELQFVTLTPIQCQAIPAIMSG- 283
E+++ L +I+ + +LGL+ E++ I ++F + IQ +A+P ++
Sbjct: 72 EVKVKLADIQADPNSPLYSAKSFDELGLAPELLKGIY-AMKFQKPSKIQERALPLLLHNP 130
Query: 284 -RDVIGISKTGSGKTVAFLLPLVRQIKAQPPLAPDETGPIGLILTPTRELA---VQIQEE 339
R++I S++G+GKT AF L ++ ++ P++ P + L P+RELA +++ +E
Sbjct: 131 PRNMIAQSQSGTGKTAAFSLTMLTRVN------PEDASPQAICLAPSRELARQTLEVVQE 184
Query: 340 ALKFCKXXXXXXXXXXXXXELKQQINELKRGVDIIVATPGRFIDLMTLNSGHLLSPTRIS 399
KF K E +QIN +IV TPG +DLM L+ +I
Sbjct: 185 MGKFTKITSQLIVPDSF--EKNKQIN-----AQVIVGTPGTVLDLMRRK---LMQLQKIK 234
Query: 400 FVVMDEADRLFDL-GFGPQVNQIMGCIRPDKQCVLFSATFPSKLKHFASRTLKNPIQITI 458
V+DEAD + D G G Q ++ + D Q VLFSATF ++ +A + + N + +
Sbjct: 235 IFVLDEADNMLDQQGLGDQCIRVKRFLPKDTQLVLFSATFADAVRQYAKKIVPNANTLEL 294
Query: 459 NSKSLINENIQQRVQIFDEEHVKFEFLLKRLSDRLALHRGEDEKTIIFVGSQQXXXXXXX 518
+ + + I+Q E KF+ +L L + + +IIFV +++
Sbjct: 295 QTNEVNVDAIKQLYMDCKNEADKFD-VLTELYGLMTIG-----SSIIFVATKKTANVLYG 348
Query: 519 XXXXNGITTFPIHAGKPSAERLRNLQKFKETDNGILICTEVLSRGLNVPEVSLVIIY--- 575
G +H + ER R + F+E + +LI T VL+RG+++P VS+V+ Y
Sbjct: 349 KLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLARGIDIPTVSMVVNYDLP 408
Query: 576 ---NAAKTIAQYVHXXXXXXXXXXXXXALSFV 604
N A Y+H A+SFV
Sbjct: 409 TLANGQADPATYIHRIGRTGRFGRKGVAISFV 440
>YDR021w [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 involved in
rRNA maturation DEAD-box superfamily
Length = 399
Score = 126 bits (317), Expect = 1e-28
Identities = 94/348 (27%), Positives = 161/348 (46%), Gaps = 18/348 (5%)
Query: 266 FVTLTPIQCQAIPAIMSGRDVIGISKTGSGKTVAFLLPLVRQIKAQPPLAPDETGPIGLI 325
F + IQ +AI I+SG+DVI +++G+GKT F + L++ I + + LI
Sbjct: 43 FEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAIDLR------KKDLQALI 96
Query: 326 LTPTRELAVQIQEEALKFCKXXXXXXXXXXXXXELKQQINEL-KRGVDIIVATPGRFIDL 384
L+PTRELA QI + LK + ++ K G + TPGR +D+
Sbjct: 97 LSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLKKMQKHGCQAVSGTPGRVLDM 156
Query: 385 MTLNSGHLLSPTRISFVVMDEADRLFD--LGFGPQVNQIMGCIRPDKQCVLFSATFPSKL 442
+ +L + +V+DEAD L LGF Q+ I + + Q V+ SAT +
Sbjct: 157 I---KKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQVVVVSATMNKDI 213
Query: 443 KHFASRTLKNPIQITINSKSLINENIQQRVQIFDEEHVKFEFLLKRLSDRLALHRGEDEK 502
+ + +P++I + + E I+Q V D+E KF+ L + D L + +
Sbjct: 214 LEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTLCD-IYDSLTI-----TQ 267
Query: 503 TIIFVGSQQXXXXXXXXXXXNGITTFPIHAGKPSAERLRNLQKFKETDNGILICTEVLSR 562
+IF +++ + +H ER + + F+ + +LI T+V +R
Sbjct: 268 CVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDVWAR 327
Query: 563 GLNVPEVSLVIIYNAAKTIAQYVHXXXXXXXXXXXXXALSFVMVDELA 610
G++V +VSLVI Y+ + I Y+H A++F+ +LA
Sbjct: 328 GIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLA 375
>7293369 [A] KOG0343 RNA Helicase
Length = 805
Score = 126 bits (316), Expect = 2e-28
Identities = 99/381 (25%), Positives = 177/381 (45%), Gaps = 25/381 (6%)
Query: 219 SEKDVEELRLSLDNIKISGKDCPKPVTKWSQLGLSSEIMDLISNELQFVTLTPIQCQAIP 278
+E ++++L+ I + + K++Q LS + ++ E +FV T +Q +I
Sbjct: 52 TEAEIQDLKTKYAEIDATA------IKKFAQFPLSKKTQKALA-ESKFVHPTQVQRDSIG 104
Query: 279 AIMSGRDVIGISKTGSGKTVAFLLPLVRQIKAQPPLAPDETGPIGLILTPTRELAVQIQE 338
+ G+DV+G + TGSGKT+AFL+P++ + D G I I++PTRELA QI E
Sbjct: 105 PALQGKDVLGAAITGSGKTLAFLIPVLEHLFMNKWSRTDGVGAI--IISPTRELAYQIFE 162
Query: 339 EALKFCKXXXXXXXXXXXXXELKQQINELKRGVDIIVATPGRFIDLMTLNSGHLLSPTRI 398
K K LK + + + +I++ TPGR + M N L + + +
Sbjct: 163 TLKKVGKHHDFSAGLIIGGKNLKFERTRMDQ-CNILICTPGRLLQHMDENP--LFNTSTM 219
Query: 399 SFVVMDEADRLFDLGFGPQVNQIMGCIRPDKQCVLFSATFPSKLKHFASRTLKNPIQITI 458
+V+DEADR D+GF +N I+ P +Q +LFSAT + ++ A LK+P+ +
Sbjct: 220 EMLVLDEADRCLDMGFQKTLNSIIENFPPVRQTLLFSATQTNTVQDLARLNLKDPVYVGY 279
Query: 459 ------NSKSLINENIQQRVQIFDEEHVKFEFLLKRLSDRLA-----LHRGEDEKTIIFV 507
S + + E ++ +++ L D++ + +K I+FV
Sbjct: 280 GGATPREEPSASTKKTPNTAVLAVPELLQQSYVVLNLEDKITMLWSFIKNHLKQKIIVFV 339
Query: 508 GS--QQXXXXXXXXXXXNGITTFPIHAGKPSAERLRNLQKFKETDNGILICTEVLSRGLN 565
S Q G ++ R+ + F + ++ T+V SRGL+
Sbjct: 340 ASCKQAKYLYEIFCKLRPGSPLLALYGTLHQDRRIAIYEDFLRKSHVVMFSTDVASRGLD 399
Query: 566 VPEVSLVIIYNAAKTIAQYVH 586
P V+ V+ + + ++QY+H
Sbjct: 400 FPAVNWVVQLDCPEDVSQYIH 420
>Hs4503531 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 407
Score = 125 bits (315), Expect = 2e-28
Identities = 97/371 (26%), Positives = 176/371 (47%), Gaps = 22/371 (5%)
Query: 245 TKWSQLGLSSEIMDLISNELQ------FVTLTPIQCQAIPAIMSGRDVIGISKTGSGKTV 298
+ W+++ + + M+L + L+ F + IQ +AI + G DVI +++G+GKT
Sbjct: 26 SNWNEIVDNFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTA 85
Query: 299 AFLLPLVRQIKAQPPLAPDETGPIGLILTPTRELAVQIQEEALKFCKXXXXXXXXXXXXX 358
F + +++Q++ + ET L+L PTRELA QIQ+ L
Sbjct: 86 TFAISILQQLEIEFK----ETQ--ALVLAPTRELAQQIQKVILALGDYMGATCHACIGGT 139
Query: 359 ELKQQINELK-RGVDIIVATPGRFIDLMTLNSGHLLSPTRISFVVMDEADRLFDLGFGPQ 417
++ ++ +L+ I+V TPGR D++ + LSP I V+DEAD + GF Q
Sbjct: 140 NVRNEMQKLQAEAPHIVVGTPGRVFDML---NRRYLSPKWIKMFVLDEADEMLSRGFKDQ 196
Query: 418 VNQIMGCIRPDKQCVLFSATFPSKLKHFASRTLKNPIQITINSKSLINENIQQRVQIFDE 477
+ +I + Q V SAT P+ + + +++PI+I + + L E I+Q +
Sbjct: 197 IYEIFQKLNTSIQVVFASATMPTDVLEVTKKFMRDPIRILVKKEELTLEGIKQFYINVER 256
Query: 478 EHVKFEFLLKRLSDRLALHRGEDEKTIIFVGSQQXXXXXXXXXXXNGITTFPIHAGKPSA 537
E K + L L + L + + +IF+ +++ T +H
Sbjct: 257 EEWKLDTLCD-LYETLTI-----TQAVIFLNTRRKVDWLTEKMHARDFTVSALHGDMDQK 310
Query: 538 ERLRNLQKFKETDNGILICTEVLSRGLNVPEVSLVIIYNAAKTIAQYVHXXXXXXXXXXX 597
ER +++F+ + +LI T++L+RG++V +VSLVI Y+ Y+H
Sbjct: 311 ERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRK 370
Query: 598 XXALSFVMVDE 608
A++FV ++
Sbjct: 371 GVAINFVTEED 381
>ECU10g1680 [A] KOG0343 RNA Helicase
Length = 452
Score = 125 bits (313), Expect = 3e-28
Identities = 94/328 (28%), Positives = 161/328 (48%), Gaps = 26/328 (7%)
Query: 266 FVTLTPIQCQAIPAIMSGRDVIGISKTGSGKTVAFLLPLVRQIKAQPPLAPDETGPIGLI 325
FV++ +Q + IP + G D+IG S+TG+GKT+AFL+P ++++ + D G L+
Sbjct: 24 FVSMKEVQQKVIPMALEGHDIIGSSQTGTGKTLAFLVPTLQRLVSLGWGGGDGLG--CLV 81
Query: 326 LTPTRELAVQIQEEALKFCKXXXXXXXXXXXXXELKQQINELKRGVDIIVATPGRFIDLM 385
+TPTRELA+QI + + K E + ++ ++ + ++I+V TPGR L
Sbjct: 82 ITPTRELALQIFDVLSRIAKYTVLSTGLIMGGLEAEDELLKVNQ-MNILVCTPGRL--LQ 138
Query: 386 TLNSGHLLSPTRISFVVMDEADRLFDLGFGPQVNQIMGCIRPDKQCVLFSATFPSKLKHF 445
L LS + +++DEAD++ ++GF + I+ I KQ +LFSAT K
Sbjct: 139 HLQENPYLSTANVQILILDEADKMIEMGFKEVLEDILEYIPQKKQTLLFSAT--PKASTA 196
Query: 446 ASRTLKNPIQITINSKSLINENIQQRVQIFDEEHVKFEFLLKRLSDRL-ALH----RGED 500
L++P I+I + ++Q F + R D++ LH +
Sbjct: 197 RILKLEDPRIISIYKEEGFPSQLRQ------------YFYMMRTGDKINYLHTFIGSNPE 244
Query: 501 EKTIIFVGSQQXXXXXXXXXXXNGITT--FPIHAGKPSAERLRNLQKFKETDNGILICTE 558
K I+F + + + F + G +R+ ++F + NGIL CT+
Sbjct: 245 VKGIVFFSTCKEVKFHCLLFERLKLRNRIFCLSGGMSQKQRIDVFKRFVKEKNGILFCTD 304
Query: 559 VLSRGLNVPEVSLVIIYNAAKTIAQYVH 586
+ SRGL+ P+V +VI Y+ + YVH
Sbjct: 305 LGSRGLDFPKVDVVIQYDCPCNVETYVH 332
>At3g16840 [A] KOG0347 RNA helicase
Length = 833
Score = 125 bits (313), Expect = 3e-28
Identities = 113/462 (24%), Positives = 190/462 (40%), Gaps = 75/462 (16%)
Query: 234 KISGKDCPKPVTKWSQLGLSSEIMDLISNELQFVTLTPIQCQAIP-AIMSGRDVIGISKT 292
++ ++ P + WS + L +M I L F T IQ A G+DVIG ++T
Sbjct: 180 QVEEEEIPPEFSAWSSMRLHPLLMKSIYR-LDFKEPTKIQKACFNVAAYQGKDVIGAAET 238
Query: 293 GSGKTVAFLLPLVRQIKAQPPLAPDETGPIG---------------------LILTPTRE 331
GSGKT+AF LP+++++ DE +G LI+TPTRE
Sbjct: 239 GSGKTLAFGLPILQRLL-------DEREKVGKLYALKGEEAQKYAADGYLRALIITPTRE 291
Query: 332 LAVQIQEEALKFCKXXXXXXXXXXXXXELKQQINELKRGVDIIVATPGRFIDLMTLNSGH 391
LA+Q+ E K ++Q LK +I+VATPGR +LM+ H
Sbjct: 292 LALQVTEHLENAAKNLSVKVVPIVGGMFSEKQERRLKEKPEIVVATPGRLWELMSAGEKH 351
Query: 392 LLSPTRISFVVMDEADRLFDLGFGPQVNQIMGCI------------------------RP 427
L+ +SF V+DEADR+ + G ++ I+ + +
Sbjct: 352 LVELHSLSFFVLDEADRMVERGHFRELQSILDLLPVTDKPNEGKTQTVKSNDTVLNVPKK 411
Query: 428 DKQCVLFSAT------FPSKLKHFASRTLKNPIQITINSKSLINENIQQRVQI------- 474
+Q +FSAT F KLK +S++ K +NS +++E R +
Sbjct: 412 KRQTFVFSATIALSSDFRKKLKRGSSKS-KQSSSGEVNSIEVLSERAGMRDNVAIIDLTT 470
Query: 475 -------FDEEHVKFEFLLKRLSDRLALHRGEDEKTIIFVGSQQXXXXXXXXXXXNGITT 527
+E +K E K L +TI+F S G+
Sbjct: 471 TSILAPKIEESFIKCEEKEKDAYLYYILSVHGQGRTIVFCTSVTDLRHISGLLKILGLDV 530
Query: 528 FPIHAGKPSAERLRNLQKFKETDNGILICTEVLSRGLNVPEVSLVIIYNAAKTIAQYVHX 587
+ + RL+++ +F+ ++NGILI T++++RG+++ V +I Y + YVH
Sbjct: 531 CTLFSEMKQRARLKSIDRFRASENGILIATDLVARGIDIKNVRTIIHYKLPHSAEVYVHR 590
Query: 588 XXXXXXXXXXXXALSFVMVDELASAYILVKCMKENELSSVPM 629
+++ + +E + Y L K + P+
Sbjct: 591 CGRTARAFADGCSIALIEPNETSKFYTLCKSFSMESVKIFPL 632
>CE06239 [A] KOG0344 ATP-dependent RNA helicase
Length = 581
Score = 124 bits (311), Expect = 6e-28
Identities = 103/397 (25%), Positives = 186/397 (45%), Gaps = 50/397 (12%)
Query: 219 SEKDVEE--------LRLSLDNIKIS------GKDCPKPVTKWSQLGLSSEIMDLISNEL 264
SE +VEE ++ LD+I+ + G P + ++S +S +++ +S E
Sbjct: 86 SENEVEETVGDVEKRMQKLLDDIRRTNRIFTWGDHLPNIILRFSDSSMSPSLLNRLS-EN 144
Query: 265 QFVTLTPIQCQAIPAIMSGRDVIGISKTGSGKTVAFLLPLVRQIKAQPPLAP----DETG 320
+PIQ Q+IP + R+V+ + TGSGKT+AF LP++ +I A + +
Sbjct: 145 SIRQPSPIQMQSIPFMTERRNVLASAPTGSGKTLAFALPVIDEILELKQRADYSSSNSSK 204
Query: 321 PIGLILTPTRELAVQIQEEALKFCKXXXXXXXXXXXXXELKQQINELKRGVDIIVATPGR 380
+ ++L PTRELA Q E LK+C Q DI+V+TP R
Sbjct: 205 LLAVVLEPTRELAAQTYTEFLKYCANTSISAANFSGEETDIQH-------ADILVSTPNR 257
Query: 381 FIDLMTLNSGHL--LSPTRISFVVMDEADRLFDLGFGPQV---NQIMGCIRP-DKQCV-- 432
+ HL + + + ++V+DE+DRLF++ G NQ+ + D +C
Sbjct: 258 IVF-------HLDKIDTSSLRWLVVDESDRLFEVVEGQDKCFRNQLAAIYKACDAKCTRV 310
Query: 433 -LFSATFPSKLKHFASRTLKNPIQITINSKSLINENIQQRVQIFDEEHVKFEFLLKRLSD 491
FSATF +++ + + + + ++ N +++Q++ E K +++
Sbjct: 311 AFFSATFSHEVEKWCKENIDEIGMVCVGERNSSNTSVKQKLTYCGTEDGK------KIAI 364
Query: 492 RLALHRGEDEKTIIFVGSQQXXXXXXXXXXX--NGITTFPIHAGKPSAERLRNLQKFKET 549
R L ++FV S+ + + I++GK ER +++F+
Sbjct: 365 RNLLRTSFKPPALVFVQSKDRAVQLVKLLSAIDSNLKVDSINSGKSDKERDETMERFRRG 424
Query: 550 DNGILICTEVLSRGLNVPEVSLVIIYNAAKTIAQYVH 586
+ +L+CTE+L RGL++ +V LVI Y+ +I Y+H
Sbjct: 425 EIWVLVCTELLGRGLDLSDVGLVINYDLPTSIVSYIH 461
>7290730 [A] KOG0331 ATP-dependent RNA helicase
Length = 438
Score = 124 bits (310), Expect = 8e-28
Identities = 95/353 (26%), Positives = 173/353 (48%), Gaps = 17/353 (4%)
Query: 238 KDCPKPVTKWSQLGLSSEIMDLISNELQFVTLTPIQCQAIPAIMSGRDVIGISKTGSGKT 297
++ P+PV + + G ++ I+ + ++ + TPIQ Q G++++ IS G+GKT
Sbjct: 25 RNLPEPVLSFERSGFNATILQQLEDQ-GYDGPTPIQAQTWSIAKEGKNIVMISGKGTGKT 83
Query: 298 VAFLLPLVRQIKAQPPLAPDETGPIGLILTPTRELAVQIQEEALKFCKXXXXXXXXXXXX 357
+ +LLP + ++ Q L + GPI LIL RE AV +Q E L +
Sbjct: 84 LGYLLPGIMKMHNQRGLMQHKKGPIVLILVDCREAAVMVQREVLYYTNPLELRTHCLLGN 143
Query: 358 XELKQQINELKRGVDIIVATPGRFIDLMTLNSGHLLSPTRISFVVMDEADRLFDLGFGPQ 417
+ + D++VA+ GR + ++ N H++ R +++V+D DR+ D+G
Sbjct: 144 SQWQGHAE-----CDLLVASAGRLLQMID-NKKHVVELERCTYLVLDNIDRMIDVGLEGN 197
Query: 418 VNQIMGCIRPDKQCVLFSATFPSKLKHFASRTLKNPIQI---TINSKSLINENIQQRVQI 474
+ +++ +RP Q ++ S ++ S LK A++ L I IN+ + +NI+QRV++
Sbjct: 198 ICRLLCRLRPHAQLIVSSTSWSSNLKRMANKFLGQYTAIRVGEINNIGVRLQNIRQRVEV 257
Query: 475 FDEEHVKFEFLLKRLSDRLALHRGED--EKTIIFVGSQQXXXXXXXXXXXNGITTFPIHA 532
+ K E L+K L+ A++ D K +I+V +Q N + IH
Sbjct: 258 VNGLS-KVERLMKELT---AIYDTSDIPGKVVIYV-KRQKVVEELVDLIRNCVPCEGIHG 312
Query: 533 GKPSAERLRNLQKFKETDNGILICTEVLSRGLNVPEVSLVIIYNAAKTIAQYV 585
G+ + E + F I++ T++ S L+VP + VI Y+ I +YV
Sbjct: 313 GRTAQENQGIIHDFGTGAYNIIVATQMTSNCLDVPGIRYVINYDFPDNIDKYV 365
>CE00839 [A] KOG0326 ATP-dependent RNA helicase
Length = 430
Score = 123 bits (309), Expect = 1e-27
Identities = 80/317 (25%), Positives = 159/317 (49%), Gaps = 17/317 (5%)
Query: 270 TPIQCQAIPAIMSGRDVIGISKTGSGKTVAFLLPLVRQIKAQPPLAPDETGPIGLILTPT 329
+PIQ +I ++G+D++ +K G+GKT A+ +P++ +I QP L + +++ PT
Sbjct: 67 SPIQEASIGVALTGQDILARAKNGTGKTGAYCIPVIEKI--QPALKAIQA----MVIVPT 120
Query: 330 RELAVQIQEEALKFCKXXXXXXXXXXXXXELKQQINELKRGVDIIVATPGRFIDLMTLNS 389
RELA+Q + ++ K +L+ I L V +++ATPGR +DLM
Sbjct: 121 RELALQTSQICVELSKHIQLKVMVTTGGTDLRDDIMRLNGTVHLVIATPGRILDLMEKGV 180
Query: 390 GHLLSPTRISFVVMDEADRLFDLGFGPQVNQIMGCIRPDKQCVLFSATFPSKLKHFASRT 449
+ +V+DEAD+L F +++++ + ++Q +L+SATFP+ + F +
Sbjct: 181 AKM---EHCKTLVLDEADKLLSQDFQGILDRLINFLPKERQVMLYSATFPNTVTSFMQKH 237
Query: 450 LKNPIQITINSKSLINENIQQRVQIFDEEHVKFEFLLKRLSDRLALHRGEDEKTIIFVGS 509
+ P +I + + + Q + +++ V L L +L ++ ++IIF S
Sbjct: 238 MHKPYEINLMEELTLLGVTQYYAFVQEKQKV---HCLNTLFRKLQIN-----QSIIFCNS 289
Query: 510 QQXXXXXXXXXXXNGITTFPIHAGKPSAERLRNLQKFKETDNGILICTEVLSRGLNVPEV 569
Q G + + IH+ R R F++ + L+C+++L+RG+++ V
Sbjct: 290 TQRVELLAKKITEIGYSCYYIHSKMAQNHRNRVFHDFRQGNCRNLVCSDLLTRGIDIQAV 349
Query: 570 SLVIIYNAAKTIAQYVH 586
++VI ++ + Y+H
Sbjct: 350 NVVINFDFPRNAETYLH 366
>At2g07750 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 845
Score = 123 bits (309), Expect = 1e-27
Identities = 112/402 (27%), Positives = 174/402 (42%), Gaps = 21/402 (5%)
Query: 202 ITLNKCLYREPNDLGLMSEKDVEELR------LSLDNI---KISGKDCPKPVTKWSQLGL 252
I L K + R D L D+ +R S+DN+ K D ++ + +
Sbjct: 323 IKLTKRVNRNVTDEELYPPLDINRVREDLSKKQSVDNVMEEKQEPHDSIYSAKRFDESCI 382
Query: 253 SSEIMDLISNELQFVTLTPIQCQAIPAIMSGRDVIGISKTGSGKTVAFLLPLVRQI--KA 310
S + +S V +T +Q + + G+D + +KTG+GK++AFLLP + +
Sbjct: 383 SPLTLKALSAS-GIVKMTRVQDATLSECLDGKDALVKAKTGTGKSMAFLLPAIETVLKAM 441
Query: 311 QPPLAPDETGPIG-LILTPTRELAVQIQEEA---LKFCKXXXXXXXXXXXXXELKQQINE 366
+ PI LIL PTRELA QI E LK L QQ E
Sbjct: 442 NSGKGVHKVAPIFVLILCPTRELASQIAAEGKALLKNHDGIGVQTLIGGTRFRLDQQRLE 501
Query: 367 LKRGVDIIVATPGRFIDLMTLNSGHLLSPTRISFVVMDEADRLFDLGFGPQVNQIMGCIR 426
I++ATPGR +D + SG + ++DEAD L DLGF V +I+ C+
Sbjct: 502 -SEPCQILIATPGRLLDHIENKSGLTSRLMALKLFIVDEADLLLDLGFKRDVEKIIDCLP 560
Query: 427 PDKQCVLFSATFPSKLKHFASRTLKNPIQI--TINSKSLINENIQQRVQIFDEEHVKFEF 484
+Q +LFSAT P +++ + LK TI + + ++ I F
Sbjct: 561 RQRQSLLFSATIPKEVRRVSQLVLKRDHSYIDTIGLGCVETHDKVKQSCIVAPHESHFHL 620
Query: 485 LLKRLSDRLALHRGEDEKTIIFVGSQQXXXXXXXXXXXNGITTFPIHAGKPSAERLRNLQ 544
+ L + ++ D K I+F + + IHA KP R
Sbjct: 621 VPHLLKEH--INNMPDYKIIVFCSTGMVTSLMYTLLREMKLNVREIHARKPQLHRTCVSD 678
Query: 545 KFKETDNGILICTEVLSRGLNVPEVSLVIIYNAAKTIAQYVH 586
+FKE++ IL+ ++V +RG+N P+V+LVI QY+H
Sbjct: 679 EFKESNRLILVTSDVSARGMNYPDVTLVIQVGIPSDREQYIH 720
>SPBC4F6.07c [A] KOG0347 RNA helicase
Length = 648
Score = 123 bits (308), Expect = 1e-27
Identities = 98/366 (26%), Positives = 167/366 (44%), Gaps = 34/366 (9%)
Query: 244 VTKWSQLGLSSEIMDLISNELQFVTLTPIQCQAIPAIMSGRDVIGISKTGSGKTVAFLLP 303
V+ W+ LS E++ +S + F PIQ IP G D+IG + TGSGKT+AF +P
Sbjct: 121 VSAWAHFSLSPEMLGSLS-KAGFSKPMPIQSLVIPEASIGFDIIGKADTGSGKTLAFGIP 179
Query: 304 LVRQIKAQPPLAPDETGPIGLILTPTRELAVQIQEEALKFCKXXXXXXXXXXXXXELKQQ 363
++ D L++ PTRELA QI + +++Q
Sbjct: 180 ILEHCLRN----VDAKYVQALVVAPTRELAHQICQHFELIKPSPNIRVMSITGGLAVQKQ 235
Query: 364 INELKRGVDIIVATPGRFIDLMTLN--SGHLLSPTRISFVVMDEADRLFDLGFGPQVNQI 421
L + ++VATPGR ++ N +G+ +I +V+DEADRL +++++
Sbjct: 236 QRLLNKHPHVVVATPGRLWSVINENNLTGNF---KKIKCLVLDEADRLLQKSHFEELSKL 292
Query: 422 MGCI----RPDKQCVLFSATFPSKLKHFASRTLKNPIQITINSKSLINENIQQRVQIFD- 476
+ + +Q +FSATF L+ + +K I NS EN+ + V+ F
Sbjct: 293 LEILGNPMHTQRQTFIFSATFDEGLQQRLKKNMKGNITEKYNSPM---ENMLKEVRFFGK 349
Query: 477 ----EEHVKFEFLLKRLSDRLALHRGEDE------------KTIIFVGSQQXXXXXXXXX 520
+ + + + L + E + KT++F +
Sbjct: 350 PKFLDANPQSAVASRVLEGLIECAPAEKDLYLYYLIMRYPGKTMVFANGIEDIKRITPFL 409
Query: 521 XXNGITTFPIHAGKPSAERLRNLQKFKETDNGILICTEVLSRGLNVPEVSLVIIYNAAKT 580
+ ++P+HA +RL++L+KFK G+L+CT+V +RG+++P V+ VI Y+ T
Sbjct: 410 NELKVPSYPLHAQLDQKKRLQSLEKFKNNPKGVLVCTDVAARGIDIPSVTHVIHYHVPHT 469
Query: 581 IAQYVH 586
YVH
Sbjct: 470 ADMYVH 475
>At5g62190 [A] KOG0331 ATP-dependent RNA helicase
Length = 671
Score = 122 bits (307), Expect = 2e-27
Identities = 102/387 (26%), Positives = 182/387 (46%), Gaps = 37/387 (9%)
Query: 213 NDLGLMSEKDVEELRLSLDNIKISGKDCPKPVTKWSQLGLSSEIMD-LISNELQFVTLTP 271
+D +K ++++L ++++++ D P V+K+ +S+ + + L +N ++ L P
Sbjct: 70 SDSSSEKKKSSKKVKLGVEDVEV---DNPNAVSKFR---ISAPLREKLKANGIE--ALFP 121
Query: 272 IQCQAIPAIMSGRDVIGISKTGSGKTVAFLLPLVRQIKAQPPLAPDETG----PIGLILT 327
IQ ++ G D++G ++TG GKT+AF+LP++ + P + + G P L+L
Sbjct: 122 IQASTFDMVLDGADLVGRARTGQGKTLAFVLPILESLVNGPAKSKRKMGYGRSPSVLVLL 181
Query: 328 PTRELAVQIQEEALKFCKXXXXXXXXXXXXXELKQQINELKRGVDIIVATPGRFIDLMTL 387
PTRELA Q+ + + Q +LKRGVDI+V TPGR D +
Sbjct: 182 PTRELAKQVAADFDAYGGSLGLSSCCLYGGDSYPVQEGKLKRGVDIVVGTPGRIKDHIER 241
Query: 388 NSGHLLSPTRISFVVMDEADRLFDLGFGPQVNQIMGCIRPDK--QCVLFSATFPSKLKHF 445
+ L + + F V+DEAD + +GF V I+G + Q +LFSAT PS +K+
Sbjct: 242 QN---LDFSYLQFRVLDEADEMLRMGFVEDVELILGKVEDSTKVQTLLFSATLPSWVKNI 298
Query: 446 ASRTLK---NPIQITINSKSLINENIQQRVQIFDEEHVKF---EFLLKRLSDRLALHRGE 499
++R LK I + N K + +++ H+ + + RL +
Sbjct: 299 SNRFLKRDQKTIDLVGNDKMKASNSVR---------HIAIPCNKAAMARLIPDIISCYSS 349
Query: 500 DEKTIIFVGSQQXXXXXXXXXXXNGITTFPIHAGKPSAERLRNLQKFKETDNGILICTEV 559
+TIIF ++ + +H P ++R L F+ L+ T V
Sbjct: 350 GGQTIIFAETKVQVSELSGLLDGSR----ALHGEIPQSQREVTLAGFRNGKFATLVATNV 405
Query: 560 LSRGLNVPEVSLVIIYNAAKTIAQYVH 586
+RGL++ +V L+I + + Y+H
Sbjct: 406 AARGLDINDVQLIIQCEPPREVEAYIH 432
>YFL002c [A] KOG0345 ATP-dependent RNA helicase
Length = 606
Score = 122 bits (306), Expect = 2e-27
Identities = 97/381 (25%), Positives = 174/381 (45%), Gaps = 34/381 (8%)
Query: 246 KWSQLGLSSEIMDLISNELQ---FVTLTPIQCQAIPAIMSGRDVIGISKTGSGKTVAFLL 302
+W LG S ++ I L F T+TP+Q IP + +DV+ S TGSGKT AF++
Sbjct: 6 EWDNLGFS--LLPWIRTGLDVMGFETMTPVQASTIPMLAGNKDVVVDSVTGSGKTAAFVI 63
Query: 303 PLVRQI-KAQPPLAPDETGPI-GLILTPTRELAVQIQEEALKFCKXXXXXXX-------X 353
P++ ++ K + + + LI+ PTREL+ QI+ L F +
Sbjct: 64 PVLEKVVKEEANTSKFKKAHFHSLIIAPTRELSRQIESVVLSFLEHYPSDLFPIKCQLLV 123
Query: 354 XXXXXELKQQI-NELKRGVDIIVATPGRFIDLMTLNSGHLLSPTRISFVVMDEADRLFDL 412
++ + N L+ I++ TPGR +D + + + + + S VVMDEADRL D+
Sbjct: 124 GTNEATVRDDVSNFLRNRPQILIGTPGRVLDFLQMPA---VKTSACSMVVMDEADRLLDM 180
Query: 413 GFGPQVNQIMGCIRPDKQCVLFSATFPSKLKHFASRTLKNPIQITINSKSLINENIQQRV 472
F +I+ + ++ LFSAT S L+NP++IT+NSK+ +++
Sbjct: 181 SFIKDTEKILRLLPKQRRTGLFSATMRSAGSDIFKTGLRNPVRITVNSKNQAPSSLKLNY 240
Query: 473 QIFDEEHVKFEFLLKRLSDRLALHRGEDEKTIIFVGSQQXXXXXXX--------XXXXNG 524
+ + K + L+ L+ + +K I++ + N
Sbjct: 241 CVVNPAE-KLQLLVS------ILNNYKFKKCIVYFPTCVSVSYFYSFIQYLGKRNILVNE 293
Query: 525 ITTFPIHAGKPSAERLRNLQKFKET-DNGILICTEVLSRGLNVPEVSLVIIYNAAKTIAQ 583
+ F +H ++ R + L F ++ N +L T+V +RG+++P+V LVI +
Sbjct: 294 VEIFSLHGKLQTSARTKTLTAFTDSLSNSVLFTTDVAARGIDIPDVDLVIQLDPPTNTDM 353
Query: 584 YVHXXXXXXXXXXXXXALSFV 604
++H A++F+
Sbjct: 354 FMHRCGRTGRANRVGKAITFL 374
>At2g40700 [A] KOG0348 ATP-dependent RNA helicase
Length = 609
Score = 122 bits (306), Expect = 2e-27
Identities = 76/245 (31%), Positives = 123/245 (50%), Gaps = 24/245 (9%)
Query: 247 WSQLGLSSEIMDLISNELQFVTLTPIQCQAIPAIMSGRDVIGISKTGSGKTVAFLLPLVR 306
+S LGL +++ D + + F T +Q QAIP I+SGRDV+ + TG+GKT+A+L PL+
Sbjct: 31 FSSLGLDTKLSDQLKERMGFEAPTLVQAQAIPVILSGRDVLVNAPTGTGKTIAYLAPLIH 90
Query: 307 QIKAQPPLAPDETGPIGLILTPTRELAVQIQEEALKFCKXXXXXXXXXXXXXELK-QQIN 365
++ P G L++ PTREL +Q+ E K E K ++
Sbjct: 91 HLQGHSPKVDRSHGTFALVIVPTRELCLQVYETLEKLLHRFHWIVPGYVMGGEKKAKEKA 150
Query: 366 ELKRGVDIIVATPGRFIDLMTLNSGHLLSPTRISFVVMDEADRLFDLGFGPQVNQIMGCI 425
L++G+ I++ATPGR +D + + + R +V+ DEAD + +LG+G ++ QI+ +
Sbjct: 151 RLRKGISILIATPGRLLDHLKNTASFVHKNLR--WVIFDEADSILELGYGKEIEQIIKLL 208
Query: 426 RP----------------DKQCVLFSATFPSKLKHFASRTLKNPIQITINSKSLINENIQ 469
KQ +L SAT K+ A +L +P+ I L N +Q
Sbjct: 209 GSGQNEQGEEDDIVPKGIQKQNLLLSATLNDKVNDLAKLSLDDPVMI-----GLDNTKLQ 263
Query: 470 QRVQI 474
Q + I
Sbjct: 264 QNLSI 268
>Hs9506609 [A] KOG0340 ATP-dependent RNA helicase
Length = 257
Score = 122 bits (305), Expect = 3e-27
Identities = 91/266 (34%), Positives = 132/266 (49%), Gaps = 15/266 (5%)
Query: 247 WSQLGLSSEIMDLISNELQFVTLTPIQCQAIPAIMSGRDVIGISKTGSGKTVAFLLPLVR 306
+++LGLSS +++ +L TP+Q IPAI+ GRD +G +KTGSGKT AF+LP+++
Sbjct: 4 FAELGLSSWLVEQC-RQLGLKKPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQ 62
Query: 307 QIKAQPPLAPDETGPIGLILTPTRELAVQIQEEALKFCKXXXXXXXXXXXXXELKQQINE 366
+ L+ D G L+LTPTRELA QI E K ++ Q E
Sbjct: 63 K------LSEDPYGIFCLVLTPTRELAYQIAERFRVLGKPLGLKDCIIVGGMDMVAQALE 116
Query: 367 LKRGVDIIVATPGRFIDLMTLNSGHLLSPTRISFVVMDEADRLFDLG---FGPQVNQIMG 423
L R +++ATPGR D L S + S +I F+VMDEADRL + G F + I+
Sbjct: 117 LSRKPHVVIATPGRLAD--HLRSSNTFSIKKIRFLVMDEADRLLEQGCTDFTVDLEAILA 174
Query: 424 CIRPDKQCVLFSATFPSKLKHFASRTLKNPIQITINSKSLINENIQQRVQIFDEEHVKFE 483
+ +Q +LFSAT L+ P + E + QR + E+ VK
Sbjct: 175 AVPARRQTLLFSATLTDTLRELQGLATNQPFFWEAQAPVSTVEQLDQRYLLVPEK-VKDA 233
Query: 484 FLLKRLSDRLALHRGEDEKTIIFVGS 509
+L+ + H ED IIF +
Sbjct: 234 YLVHLIQRFQDEH--EDWSIIIFTNT 257
>YBR142w [A] KOG0347 RNA helicase
Length = 773
Score = 121 bits (303), Expect = 5e-27
Identities = 116/430 (26%), Positives = 203/430 (46%), Gaps = 69/430 (16%)
Query: 220 EKDVEE--LRLSLDNIKISGKDC-PKPVTKWSQLG-LSSEIMDLISNELQFVTLTPIQCQ 275
++DV+E L+ ++ N I+ D P + +W+ L LS I+ + N L F+ T IQ +
Sbjct: 142 DEDVDEDVLKENVFNKDINIDDISPVNLPEWTNLAPLSMTILQSLQN-LNFLRPTEIQKK 200
Query: 276 AIPAIMSGRDVIGISKTGSGKTVAFLLPLVRQIKAQPPLAPDETGPIGLILTPTRELAVQ 335
+IP IM G DV+G + TGSGKT+A+ +P+V ++ + + PI LI TPTRELA Q
Sbjct: 201 SIPVIMQGVDVMGKASTGSGKTLAYGIPIVEKLISN--FSQKNKKPISLIFTPTRELAHQ 258
Query: 336 IQEEALKFCK------XXXXXXXXXXXXXELKQQINELKRGVDIIVATPGRFIDLMTLNS 389
+ + K C+ + +Q++ + I++ATPGRF++L+ ++
Sbjct: 259 VTDHLKKICEPVLAKSQYSILSLTGGLSIQKQQRLLKYDNSGQIVIATPGRFLELLEKDN 318
Query: 390 GHLLSPTRISFVVMDEADRLFDLGFGPQVNQIMGCIRPDK--------------QCVLFS 435
+ ++++ +++DEADRL G + +I+ + ++ Q ++FS
Sbjct: 319 TLIKRFSKVNTLILDEADRLLQDGHFDEFEKIIKHLLVERRKNRENSEGSSKIWQTLIFS 378
Query: 436 ATFPSKL--KHFASRTLKN-----------------PIQITINSKS-LINENIQQRVQI- 474
ATF L K +SR +K+ +I NSK +I+ N + +V
Sbjct: 379 ATFSIDLFDKLSSSRQVKDRRFKNNEDELNAVIQHLMSKIHFNSKPVIIDTNPESKVSSQ 438
Query: 475 FDEEHVKFEFLLKRLSDR--LALHRGEDEKTIIFVGSQQXXXXXXXXXXXNGITTFPIHA 532
E ++ L + L L + G T+IF + GI F IH+
Sbjct: 439 IKESLIECPPLERDLYCYYFLTMFPG---TTLIFCNAIDSVKKLTVYLNNLGIPAFQIHS 495
Query: 533 GKPSAERLRNLQKFKETD----------------NGILICTEVLSRGLNVPEVSLVIIYN 576
RL++L++FK+ + +LI ++V +RGL++P V VI Y+
Sbjct: 496 SMTQKNRLKSLERFKQQSAKQKTINHSNPDSVQLSTVLIASDVAARGLDIPGVQHVIHYH 555
Query: 577 AAKTIAQYVH 586
++ Y+H
Sbjct: 556 LPRSTDIYIH 565
>SPAC17G6.14c [A] KOG0329 ATP-dependent RNA helicase
Length = 434
Score = 120 bits (302), Expect = 6e-27
Identities = 98/379 (25%), Positives = 169/379 (43%), Gaps = 31/379 (8%)
Query: 272 IQCQAIPAIMSGRDVIGISKTGSGKTVAFLLPLVRQIKAQPPLAPDETGPIGLILTPTRE 331
+Q IP + G DV+ +K+G GKT F+L ++QI+ P + L+L TRE
Sbjct: 77 VQQVCIPQSILGTDVLCQAKSGMGKTAVFVLSTLQQIE------PVDGEVSVLVLCHTRE 130
Query: 332 LAVQIQEEALKFCKXX-XXXXXXXXXXXELKQQINELK---RGVDIIVATPGRFIDLMTL 387
LA QI+ E +F K +KQ + K + I+VATPGR L L
Sbjct: 131 LAFQIKNEYARFSKYLPDVRTAVFYGGINIKQDMEAFKDKSKSPHIVVATPGR---LNAL 187
Query: 388 NSGHLLSPTRISFVVMDEADRLFD-LGFGPQVNQIMGCIRPDKQCVLFSATFPSKLKHFA 446
+L + V+DE D+L + + + ++ P KQ ++FSAT ++++
Sbjct: 188 VREKILKVNSVKHFVLDECDKLLESVDMRRDIQEVFRATPPQKQVMMFSATLSNEIRPIC 247
Query: 447 SRTLKNPIQITINSKSLINENIQQRVQIFDEEHVKFEFLLKRLSDRLALHRGEDEKTIIF 506
+ ++NP++I ++ ++ + + Q + +VK E K L E + +IF
Sbjct: 248 KKFMQNPLEIYVDDETKLTLHGLQ------QHYVKLEEKAKNRKINDLLDSLEFNQVVIF 301
Query: 507 VGSQQXXXXXXXXXXXNGITTFPIHAGKPSAERLRNLQKFKETDNGILICTEVLSRGLNV 566
V S + IH G P ER++ + FK+ D I + T+V RG+++
Sbjct: 302 VKSVSRANELDRLLRECNFPSICIHGGLPQEERIKRYKAFKDFDKRICVATDVFGRGIDI 361
Query: 567 PEVSLVIIYNAAKTIAQYVHXXXXXXXXXXXXXALSFVMVDELASAYILVKCMKENELSS 626
V++VI Y+ + Y+H A++F +E + IL K + E++
Sbjct: 362 ERVNIVINYDMPDSPDSYLHRVGRAGRFGTKGLAITFSSSEE--DSQILDKIQERFEVN- 418
Query: 627 VPMVVYQKLKEMNDEFSSG 645
+ E+ DE G
Sbjct: 419 --------ITELPDEIDVG 429
>At1g51380 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 involved in
rRNA maturation DEAD-box superfamily
Length = 392
Score = 120 bits (302), Expect = 6e-27
Identities = 88/368 (23%), Positives = 165/368 (43%), Gaps = 16/368 (4%)
Query: 242 KPVTKWSQLGLSSEIMDLISNELQFVTLTPIQCQAIPAIMSGRDVIGISKTGSGKTVAFL 301
KP+ + +G++ +++ + + + + IQ +A+ I+ GRDVI +++G+GKT
Sbjct: 19 KPIKSFDDMGMNDKVLRGVY-DYGYKKPSEIQQRALVPILKGRDVIAQAQSGTGKTSMIA 77
Query: 302 LPLVRQIKAQPPLAPDETGPIGLILTPTRELAVQIQEEALKFCKXXXXXXXXXXXXXELK 361
+ + + + L+L+P+RELA Q ++ +
Sbjct: 78 ISVCQIVNISSRKVQV------LVLSPSRELASQTEKTIQAIGAHTNIQAHACIGGKSIG 131
Query: 362 QQINELKRGVDIIVATPGRFIDLMTLNSGHLLSPTRISFVVMDEADRLFDLGFGPQVNQI 421
+ I +L+RGV + TPGR D++ S L + +V+DE+D + G Q+ +
Sbjct: 132 EDIKKLERGVHAVSGTPGRVYDMIKRGS---LQTKAVKLLVLDESDEMLSKGLKDQIYDV 188
Query: 422 MGCIRPDKQCVLFSATFPSKLKHFASRTLKNPIQITINSKSLINENIQQRVQIFDEEHVK 481
+ D Q L SAT P ++ + + +P++I + L E I+Q D+E K
Sbjct: 189 YRALPHDIQVCLISATLPQEILEMTEKFMTDPVRILVKPDELTLEGIKQYYVDVDKEEWK 248
Query: 482 FEFLLKRLSDRLALHRGEDEKTIIFVGSQQXXXXXXXXXXXNGITTFPIHAGKPSAERLR 541
F+ L L RL ++ + IIF ++Q + +H K ER
Sbjct: 249 FDTLCD-LYGRLTIN-----QAIIFCNTRQKVDWLTEKMRSSNFIVSSMHGDKRQKERDD 302
Query: 542 NLQKFKETDNGILICTEVLSRGLNVPEVSLVIIYNAAKTIAQYVHXXXXXXXXXXXXXAL 601
+ +F+ + +LI ++V +RG++V VS VI Y+ Y+H A+
Sbjct: 303 IMNQFRSFKSRVLIASDVWARGIDVQTVSHVINYDIPNNPELYIHRIGRAGRFGREGVAI 362
Query: 602 SFVMVDEL 609
+FV ++
Sbjct: 363 NFVKSSDM 370
>At1g54270 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 412
Score = 119 bits (299), Expect = 1e-26
Identities = 97/370 (26%), Positives = 164/370 (44%), Gaps = 21/370 (5%)
Query: 245 TKWSQLGLSSEIMDLISNELQ------FVTLTPIQCQAIPAIMSGRDVIGISKTGSGKTV 298
T + ++ S + M L N L+ F + IQ + I G DVI +++G+GKT
Sbjct: 32 TSYDEVHESFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTA 91
Query: 299 AFLLPLVRQIKAQPPLAPDETGPIGLILTPTRELAVQIQEEALKFCKXXXXXXXXXXXXX 358
F +++Q+ L+L PTRELA QI++
Sbjct: 92 TFCSGVLQQLDYALLQCQ------ALVLAPTRELAQQIEKVMRALGDYQGVKVHACVGGT 145
Query: 359 ELKQQINELKRGVDIIVATPGRFIDLMTLNSGHLLSPTRISFVVMDEADRLFDLGFGPQV 418
+++ L+ GV ++V TPGR D++ S L P I V+DEAD + GF Q+
Sbjct: 146 SVREDQRILQAGVHVVVGTPGRVFDMLRRQS---LRPDCIKMFVLDEADEMLSRGFKDQI 202
Query: 419 NQIMGCIRPDKQCVLFSATFPSKLKHFASRTLKNPIQITINSKSLINENIQQRVQIFDEE 478
I + P Q +FSAT P + + + P++I + L E I+Q ++E
Sbjct: 203 YDIFQLLPPKIQVGVFSATMPPEALEITRKFMSKPVRILVKRDELTLEGIKQFYVNVEKE 262
Query: 479 HVKFEFLLKRLSDRLALHRGEDEKTIIFVGSQQXXXXXXXXXXXNGITTFPIHAGKPSAE 538
K E L L + LA+ +++IFV +++ T H
Sbjct: 263 DWKLETLCD-LYETLAI-----TQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNT 316
Query: 539 RLRNLQKFKETDNGILICTEVLSRGLNVPEVSLVIIYNAAKTIAQYVHXXXXXXXXXXXX 598
R +++F+ + +LI T++L+RG++V +VSLVI ++ Y+H
Sbjct: 317 RDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKG 376
Query: 599 XALSFVMVDE 608
A++FV +D+
Sbjct: 377 VAINFVTLDD 386
>CE23814 [A] KOG0340 ATP-dependent RNA helicase
Length = 696
Score = 119 bits (298), Expect = 2e-26
Identities = 88/319 (27%), Positives = 142/319 (43%), Gaps = 14/319 (4%)
Query: 290 SKTGSGKTVAFLLPLVRQIKAQPPLAPDETGPIGLILTPTRELAVQIQEEALKFCKXXXX 349
++TG+GKT+AF +P+++++ P G LILTPTRELA QI E+ K
Sbjct: 190 ARTGTGKTLAFAIPILQKLSVDP------YGIYALILTPTRELAFQIAEQFTALGKPITL 243
Query: 350 XXXXXXXXXELKQQINELKRGVDIIVATPGRFIDLMTLNSGHLLSP-TRISFVVMDEADR 408
L Q EL ++VATPGR DL+ + + +I F V+DEADR
Sbjct: 244 KCSVIVGGRSLIHQARELSERPHVVVATPGRLADLIESDPDTIAKVFKKIQFFVLDEADR 303
Query: 409 LFDLGFGPQVNQIMGCIRPDKQCVLFSATFPSKLKHFASRTLKNPIQITINSKSLINENI 468
+ + + Q+ I I +Q +L SAT + + + + P K +E+
Sbjct: 304 MLEGQYNDQLKPIFESISEKRQTLLLSATITNNINMLHRVSTRKPYFFEDKGKD--DEST 361
Query: 469 QQRVQ---IFDEEHVKFEFLLKRLSDRLALHRGEDEKTIIFVGSQQXXXXXXXXXXXNGI 525
R++ + VK +L+ + + + +IF + + G
Sbjct: 362 VDRLEQKYVVCPVAVKDAYLVYVVKNYS--EKNPKSSVMIFAQTCRECQALAYMFEGLGF 419
Query: 526 TTFPIHAGKPSAERLRNLQKFKETDNGILICTEVLSRGLNVPEVSLVIIYNAAKTIAQYV 585
+H+ P +RL L F+ ++ICT+V SRGL++P V LV+ +N + Y+
Sbjct: 420 RVGSLHSQIPQKQRLAALSAFRSKTLQVIICTDVASRGLDIPHVDLVVNHNVPQCPKTYI 479
Query: 586 HXXXXXXXXXXXXXALSFV 604
H ALSFV
Sbjct: 480 HRVGRSARAGRFGSALSFV 498
>CE27336 [A] KOG0334 RNA helicase
Length = 436
Score = 118 bits (296), Expect = 3e-26
Identities = 103/370 (27%), Positives = 156/370 (41%), Gaps = 64/370 (17%)
Query: 307 QIKAQPPLAPDETG--PIGLILTPTRELAVQIQEEALKFCKXXXXXXXXXXXXXELKQQI 364
+++ P AP E G PI +ILTPTRELA+Q +EA KF K + +QI
Sbjct: 101 EVRENPLEAPLEEGDGPIAVILTPTRELAMQTYKEANKFAKPLGLKVACTYGGVGISEQI 160
Query: 365 NELKRGVDIIVATPGRFIDLMTLNSGHLLSPTRISFVVMDEADRLFDLGFGPQVNQIMGC 424
+LKRG +I+V TPGR ID++ NSG + + R++++V+DEADR+F GF PQV
Sbjct: 161 ADLKRGAEIVVCTPGRMIDVLAANSGKVTNLRRVTYLVLDEADRMFHKGFEPQV------ 214
Query: 425 IRPDKQCVLFSATFPSKLKHFASRTLKNPIQITINSKSLINENIQQRVQIFDEEHVKFEF 484
KS++ +I Q + EH KF
Sbjct: 215 ----------------------------------GGKSVVCSDITQNA-VICAEHQKFLK 239
Query: 485 LLKRLSDRLALHRGEDEKTIIFVGSQQXXXXXXXXXXXNGITTF-PIHAGKPSAERLRNL 543
LL+ L ++ +I+FV Q+ G + +H G +R ++
Sbjct: 240 LLELLGMYY-----DEGSSIVFVDKQEKADDIVDQLMRTGYNSVASLHGGIDQHDRDSSI 294
Query: 544 QKFKETDNGILICTEVLSRGLNVPEVSLVIIYNAAKTIAQYVHXXXXXXXXXXXXXALSF 603
FK +L+ T V +RGL+V + LV+ Y+ YVH
Sbjct: 295 ADFKTGVIKVLVATSVAARGLDVKNLILVVNYDCPNHYEDYVHRVGRTGRAGRKDQE--- 351
Query: 604 VMVDELASAYILVKCMKENELSSVPMVVYQKLKEMNDEFSSGLKT-GKYRLIQGFGGKGL 662
M E+ A+ C + LK M + F S + GK + G G +G
Sbjct: 352 KMAGEVCRAFETAGCKPPAD-----------LKAMFERFKSEMAAEGKDVKLGGKGFEGS 400
Query: 663 DHLDELNEAK 672
D+ + EA+
Sbjct: 401 DYKYDEGEAE 410
>YDR194c [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 664
Score = 117 bits (294), Expect = 5e-26
Identities = 107/403 (26%), Positives = 177/403 (43%), Gaps = 34/403 (8%)
Query: 233 IKISGKDCPKPVTKWSQLG---LSSEIMDLISNELQFVTLTPIQCQAIPAIMSGRD--VI 287
I + +D K VT S L L EI I+ ++F LTP+Q + I I+S D VI
Sbjct: 91 IHVPKEDNSKEVTLDSLLEEGVLDKEIHKAITR-MEFPGLTPVQQKTIKPILSSEDHDVI 149
Query: 288 GISKTGSGKTVAFLLPLVRQIKAQPPLAPDETGPIGLILTPTRELAVQIQEEALKFC--- 344
+KTG+GKT AFL+P+ + + + +I+ PTR+LA+QI+ E K
Sbjct: 150 ARAKTGTGKTFAFLIPIFQHLINTK--FDSQYMVKAVIVAPTRDLALQIEAEVKKIHDMN 207
Query: 345 ----KXXXXXXXXXXXXXELKQQINELKRGVDIIVATPGRFIDLMTLNSGHLLSPTRISF 400
K ++N+L+ +I++ATPGR ID++ S + +
Sbjct: 208 YGLKKYACVSLVGGTDFRAAMNKMNKLRP--NIVIATPGRLIDVLEKYSNKFFR--FVDY 263
Query: 401 VVMDEADRLFDLGFGPQVNQIMGCIRPDK-------QCVLFSATFPSKLKHFASRTLKNP 453
V+DEADRL ++GF + I G + + +LFSAT K++ A+ +
Sbjct: 264 KVLDEADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKK 323
Query: 454 ----IQITINSKSLINENIQQRVQIFDEEHVKFEFLLKRLSDRLALHRGEDEKTIIFVGS 509
+ ++ +E I Q V + E+ F + R + K IIF +
Sbjct: 324 ECLFLDTVDKNEPEAHERIDQSV-VISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPT 382
Query: 510 QQXXXXXXXXXXXNGITTFPI---HAGKPSAERLRNLQKFKETDNGILICTEVLSRGLNV 566
+ PI H +R +++FK+ ++GIL+CT+V +RG++
Sbjct: 383 VKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDF 442
Query: 567 PEVSLVIIYNAAKTIAQYVHXXXXXXXXXXXXXALSFVMVDEL 609
P V V+ +A Y+H ++ F+ DEL
Sbjct: 443 PNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDEL 485
>7294824 [K] KOG4284 DEAD box protein
Length = 1028
Score = 117 bits (293), Expect = 7e-26
Identities = 93/398 (23%), Positives = 187/398 (46%), Gaps = 31/398 (7%)
Query: 241 PKPVTKWSQLGLSSEIMDLISNELQFVTLTPIQCQAIPAIMSGRDVIGISKTGSGKTVAF 300
P V + +L L +++ + FVT T IQ AIP ++ D+I SK+G+GKT+ +
Sbjct: 21 PGQVKTFEELRLYRNLLNGLKRN-NFVTPTKIQAAAIPMALAKMDLIIQSKSGTGKTLIY 79
Query: 301 LLPLVRQIKAQPPLAPDETGPIGLILTPTRELAVQIQEEALKFCKXXX----XXXXXXXX 356
++ +V+ P+ P +I+ PTRELA+Q+Q+ CK
Sbjct: 80 VIAVVQSFN------PNINQPHAMIVVPTRELAIQVQDTFFHLCKSFRDFKCSAFIGGTD 133
Query: 357 XXELKQQINELKRGVDIIVATPGRFIDLMTLNSGHLLSPTRISFVVMDEADRLFDL-GFG 415
+ ++++NE + +I+ TPGR L+ L + +++ +V+DEAD+L+
Sbjct: 134 VAKDRKRMNESR----VIIGTPGR---LLHLYENRVFDVSKLRLLVLDEADQLYQTKSLQ 186
Query: 416 PQVNQIMGCIRPDKQCVLFSATFPSKLKHFASRTLKNPIQITINSKSLINENIQQRVQIF 475
V++++ + ++Q + SAT+ L ++ + P+ I+ + ++ + I+Q V
Sbjct: 187 HTVSKLIEAMPKNRQIIACSATYDQNLDERLAKVMDKPMLISNSERATVLLGIRQFVYEL 246
Query: 476 DEEHVKFEFLLKRLSDRLAL-HRGEDEKTIIFVGSQQXXXXXXXXXXXNGITTFPIHAGK 534
+++ E + +L + ++ E+ IIF SQ +GI I
Sbjct: 247 PQQNNSVEEMRLKLQILGQIFNQLPYEQAIIFASSQMRADSYKNYLTASGIDCHLISGAM 306
Query: 535 PSAERLRNLQKFKETDNGILICTEVLSRGLNVPEVSLVIIYNAAKTIAQYVHXXXXXXXX 594
+ERL + ++ IL+ T++++RG++ P +LVI + + Y+H
Sbjct: 307 EQSERLHVFEGYRNFTMRILVATDLMARGVDSPHANLVINIDPPQDHVTYLHRIGRAGRF 366
Query: 595 XXXXXALSFV-----------MVDELASAYILVKCMKE 621
A++F+ M ++A+A+ +++ KE
Sbjct: 367 GSKGIAITFIASKKESQRFREMSKKIATAWSVLEFPKE 404
>At4g00660 [A] KOG0326 ATP-dependent RNA helicase
Length = 499
Score = 117 bits (292), Expect = 9e-26
Identities = 93/351 (26%), Positives = 153/351 (43%), Gaps = 23/351 (6%)
Query: 263 ELQFVTLTPIQCQAIPAIMSGRDVIGISKTGSGKTVAFLLPLVRQIKAQPPLAPDETGPI 322
E F +PIQ ++IP ++GRD++ +K G+GKT AF +P++ +I +
Sbjct: 148 EKGFERPSPIQEESIPIALTGRDILARAKNGTGKTAAFCIPVLEKIDQDNNVIQGNC--- 204
Query: 323 GLILTPTRELAVQIQEEALKFCKXXXXXXXXXXXXXELKQQINELKRGVDIIVATPGRFI 382
+L T ++ ++ K LK I L + V ++V TPGR +
Sbjct: 205 --VLDHTSQVCKELG-------KHLKIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRIL 255
Query: 383 DLMTLNSGHLLSPTRISFVVMDEADRLFDLGFGPQVNQIMGCIRPDKQCVLFSATFPSKL 442
DL L S +VMDEAD+L F P V ++ + +Q ++FSATFP +
Sbjct: 256 DLTKKGVCVLKD---CSVLVMDEADKLLSQEFQPSVEHLISFLPESRQILMFSATFPVTV 312
Query: 443 KHFASRTLKNPIQITINSKSLINENIQQRVQIFDEEHVKFEFLLKRLSDRLALHRGEDEK 502
K F R L NP I + + + Q F EE K L L +L ++ +
Sbjct: 313 KDFKDRFLTNPYVINLMDELTLKGITQ--FYAFVEERQKIH-CLNTLFSKLQIN-----Q 364
Query: 503 TIIFVGSQQXXXXXXXXXXXNGITTFPIHAGKPSAERLRNLQKFKETDNGILICTEVLSR 562
+IIF S G + F IHA R R F+ L+CT++ +R
Sbjct: 365 SIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTR 424
Query: 563 GLNVPEVSLVIIYNAAKTIAQYVHXXXXXXXXXXXXXALSFVMVDELASAY 613
G+++ V++VI ++ K Y+H A++ + ++ + Y
Sbjct: 425 GIDIQAVNVVINFDFPKNAETYLHRVGRSGRFGHLGLAVNLITYEDRFNLY 475
>YDL084w [A] KOG0329 ATP-dependent RNA helicase
Length = 446
Score = 116 bits (291), Expect = 1e-25
Identities = 92/343 (26%), Positives = 151/343 (43%), Gaps = 22/343 (6%)
Query: 272 IQCQAIPAIMSGRDVIGISKTGSGKTVAFLLPLVRQIKAQPPLAPDETGPIGLI-LTPTR 330
+Q IP + G DV+ +K+G GKT F+L ++Q+ P G + ++ + R
Sbjct: 88 VQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQLDPVP-------GEVAVVVICNAR 140
Query: 331 ELAVQIQEEALKFCKXXXXXXXXXXXXXELKQQINELKRGVD----IIVATPGRFIDLMT 386
ELA QI+ E L+F K + EL + D I+VATPGR L
Sbjct: 141 ELAYQIRNEYLRFSKYMPDVKTAVFYGGTPISKDAELLKNKDTAPHIVVATPGR---LKA 197
Query: 387 LNSGHLLSPTRISFVVMDEADRLFD-LGFGPQVNQIMGCIRPDKQCVLFSATFPSKLKHF 445
L + + + V+DE D++ + L V +I DKQ ++FSAT +++
Sbjct: 198 LVREKYIDLSHVKNFVIDECDKVLEELDMRRDVQEIFRATPRDKQVMMFSATLSQEIRPI 257
Query: 446 ASRTLKNPIQITINSKSLINENIQQRVQIFDEEHVKFEFLLKRLSDRLALHRGEDEKTII 505
R L+NP++I ++ ++ + + Q+ I EE K L + L D E + II
Sbjct: 258 CRRFLQNPLEIFVDDEAKLTLHGLQQYYIKLEEREKNRKLAQLLDDL------EFNQVII 311
Query: 506 FVGSQQXXXXXXXXXXXNGITTFPIHAGKPSAERLRNLQKFKETDNGILICTEVLSRGLN 565
FV S + +H ER+ + FK+ + I + T+V RG++
Sbjct: 312 FVKSTTRANELTKLLNASNFPAITVHGHMKQEERIARYKAFKDFEKRICVSTDVFGRGID 371
Query: 566 VPEVSLVIIYNAAKTIAQYVHXXXXXXXXXXXXXALSFVMVDE 608
+ ++L I Y+ QY+H A+SFV E
Sbjct: 372 IERINLAINYDLTNEADQYLHRVGRAGRFGTKGLAISFVSSKE 414
>At3g53110 [A] KOG0332 ATP-dependent RNA helicase
Length = 496
Score = 116 bits (291), Expect = 1e-25
Identities = 102/380 (26%), Positives = 176/380 (45%), Gaps = 30/380 (7%)
Query: 211 EPNDLGLMSEKDVEELRLSLD--NIK-ISGKDCP-KPVTKWSQLGLSSEIMDLISNELQF 266
E N L + E+ + + + NIK ++ D P +++ L LS E+M + E++F
Sbjct: 53 ELNSLSIKEEEKPDSILEEPEDSNIKAVTSGDTPYTSASRFEDLNLSPELMKGLYVEMKF 112
Query: 267 VTLTPIQCQAIPAIMSG--RDVIGISKTGSGKTVAFLLPLVRQIKAQPPLAPDETGPIGL 324
+ IQ ++P IM+ + +I + GSGKT F+L ++ ++ P P L
Sbjct: 113 EKPSKIQAISLPMIMTPPHKHLIAQAHNGSGKTTCFVLGMLSRVD------PTLREPQAL 166
Query: 325 ILTPTRELAVQIQEEALKFCKXXXXXXXXXXXXXELKQQINELKRGVDI----IVATPGR 380
+ PTRELA Q E K K + + RG + ++ TPG
Sbjct: 167 CICPTRELANQNMEVLQKMGKFTGITAELAVP--DSTRGAPAATRGAPVSAHVVIGTPGT 224
Query: 381 FIDLMTLNSGHLLSPTRISFVVMDEADRLFDL-GFGPQVNQIM---GCIRPDKQCVLFSA 436
M L + +V DEAD + GF +IM G + P+ Q +LFSA
Sbjct: 225 LKKWMAFKR---LGLNHLKILVFDEADHMLATDGFRDDSLKIMKDIGRVNPNFQVLLFSA 281
Query: 437 TFPSKLKHFASRTLKNPIQITINSKSLINENIQQRVQIFDEEHVKFEFLLKRLSDRLALH 496
TF +K F +RT+K+P Q+ + + L ++++Q + +E K E + ++ +
Sbjct: 282 TFNETVKDFVARTVKDPNQLFVKREDLALDSVKQYKVVCPKEQNKIEVIKDQI-----ME 336
Query: 497 RGEDEKTIIFVGSQQXXXXXXXXXXXNGITTFPIHAGKPSAERLRNLQKFKETDNGILIC 556
G+ +TIIFV ++ G +H ++R + +++FKE +LI
Sbjct: 337 LGDIGQTIIFVKTKASAQKVHKALAEMGYDVTSVHGNLTESDRDKIVKEFKECLTQVLIA 396
Query: 557 TEVLSRGLNVPEVSLVIIYN 576
T+V++RG + V+LV+ YN
Sbjct: 397 TDVIARGFDQQRVNLVVNYN 416
>At3g13920 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 412
Score = 116 bits (290), Expect = 2e-25
Identities = 96/370 (25%), Positives = 161/370 (42%), Gaps = 21/370 (5%)
Query: 245 TKWSQLGLSSEIMDLISNELQ------FVTLTPIQCQAIPAIMSGRDVIGISKTGSGKTV 298
T + + S + M L N L+ F + IQ + I G DVI +++G+GKT
Sbjct: 32 TSYDDVHESFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTA 91
Query: 299 AFLLPLVRQIKAQPPLAPDETGPIGLILTPTRELAVQIQEEALKFCKXXXXXXXXXXXXX 358
F +++Q+ L+L PTRELA QI++
Sbjct: 92 TFCSGVLQQLDFSLIQCQ------ALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGT 145
Query: 359 ELKQQINELKRGVDIIVATPGRFIDLMTLNSGHLLSPTRISFVVMDEADRLFDLGFGPQV 418
+++ L+ GV ++V TPGR D++ S L I V+DEAD + GF Q+
Sbjct: 146 SVREDQRILQAGVHVVVGTPGRVFDMLKRQS---LRADNIKMFVLDEADEMLSRGFKDQI 202
Query: 419 NQIMGCIRPDKQCVLFSATFPSKLKHFASRTLKNPIQITINSKSLINENIQQRVQIFDEE 478
I + P Q +FSAT P + + + P++I + L E I+Q ++E
Sbjct: 203 YDIFQLLPPKIQVGVFSATMPPEALEITRKFMSKPVRILVKRDELTLEGIKQFYVNVEKE 262
Query: 479 HVKFEFLLKRLSDRLALHRGEDEKTIIFVGSQQXXXXXXXXXXXNGITTFPIHAGKPSAE 538
K E L L + LA+ +++IFV +++ T H
Sbjct: 263 EWKLETLCD-LYETLAI-----TQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNT 316
Query: 539 RLRNLQKFKETDNGILICTEVLSRGLNVPEVSLVIIYNAAKTIAQYVHXXXXXXXXXXXX 598
R +++F+ + +LI T++L+RG++V +VSLVI ++ Y+H
Sbjct: 317 RDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKG 376
Query: 599 XALSFVMVDE 608
A++FV D+
Sbjct: 377 VAINFVTRDD 386
>ECU10g0690 [A] KOG0345 ATP-dependent RNA helicase
Length = 463
Score = 115 bits (288), Expect = 3e-25
Identities = 98/381 (25%), Positives = 170/381 (43%), Gaps = 35/381 (9%)
Query: 266 FVTLTPIQCQAIPAIMSGRDVIGISKTGSGKTVAFLLPLVRQIKAQPPLAPDETGPIGLI 325
F +T +Q + IP ++ G+DV+ S TG+GKT+AFL P++ I G ++
Sbjct: 24 FGKMTEVQLKCIPEVLKGKDVVVQSPTGTGKTMAFLAPILSCI--YDGKGRGRPGVTAVV 81
Query: 326 LTPTRELAVQIQEEALKFCKXXXXXXXXXXXXXELKQQINELKRGVDIIVATPGRFIDLM 385
+TPTRELA+QI+E A F +++ +K I V TPGR ++++
Sbjct: 82 ITPTRELALQIREVAGLF----DVKCECFIGGMSIEEDYKRMKEEFSIAVGTPGRLLEIV 137
Query: 386 TLNSGHLLSPTRISFVVMDEADRLFDLGFGPQVNQIMGCIRPDKQCVLFSATFPSKLKHF 445
+ S +S +V+DEAD+L GF ++ Q++ + ++ LFSAT +
Sbjct: 138 GKETKKFSS---LSHLVLDEADKLLGFGFEEKLMQLLAKLPRNRVTGLFSATRNDSVDKL 194
Query: 446 ASRTLKNPIQITINSKSLINENIQQRVQIFDEEHVKFEFLLKRLSDRLALHRG--EDEKT 503
+ L+NP+ I + + +E V E+++ ++L + +
Sbjct: 195 SRVFLRNPVSINVGN---------------NEMPVALEYIVVSPMEKLLVLMDIVTGRRC 239
Query: 504 IIFVGSQQXXXXXXXXXXXNGITTF-PIHAGKPSAERLRNLQKFKETDNGILICTEVLSR 562
I+F + G IH ER R ++F + D G+L CT+V +R
Sbjct: 240 IVFFATCSEVDFFSGLVSRAGFGNICKIHGKISQDERNRVYEEFFQRD-GLLFCTDVAAR 298
Query: 563 GLNVPEVSLVIIYNAAKTIAQYVHXXXXXXXXXXXXXALSFVMVDELASAYILVKCMK-- 620
G++ V LV+ ++ K + VH ++ FVM +E AY+ +K
Sbjct: 299 GIDFRGVDLVVHFDVPKEYSSIVHRSGRTARNGSKGESVLFVMPNE--RAYVEFLKLKGI 356
Query: 621 ---ENELSSVPMVVYQKLKEM 638
E+ + YQ +K M
Sbjct: 357 PAVESSYRMKSSLSYQDIKSM 377
>SPBC12C2.06 [A] KOG0332 ATP-dependent RNA helicase
Length = 503
Score = 114 bits (286), Expect = 5e-25
Identities = 100/370 (27%), Positives = 177/370 (47%), Gaps = 27/370 (7%)
Query: 211 EPNDLGLMSEKDVEELRLSLDNIKISGKDCPKPVTKWSQLGLSSEIMDLISNELQFVTLT 270
E ++ L+ K+ E+R+ L +++ V + +L L E++ I + ++F +
Sbjct: 82 ENDESNLIPNKN--EVRVKLADLQADPNSPLFSVKSFEELELKPELLKGIYS-MKFQKPS 138
Query: 271 PIQCQAIPAIMSG--RDVIGISKTGSGKTVAFLLPLVRQIKAQPPLAPDETGPIGLILTP 328
IQ +A+P ++S R++IG S++G+GKT AF L ++ ++ A P P + L P
Sbjct: 139 KIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDASVPK------PQAICLAP 192
Query: 329 TRELAVQIQEEALKFCKXXXXXXXXXXXXXELKQQINE-LKRGVDIIVATPGRFIDLMTL 387
+RELA QI + + K +K + + K I++ TPG +DLM
Sbjct: 193 SRELARQIMDVVTEMGKYTEVKTAFG-----IKDSVPKGAKIDAQIVIGTPGTVMDLMKR 247
Query: 388 NSGHLLSPTRISFVVMDEADRLFDL-GFGPQVNQIMGCIRPDKQCVLFSATFPSKLKHFA 446
L I V+DEAD + D G G Q +I + + Q VLFSATF +++ +A
Sbjct: 248 RQ---LDARDIKVFVLDEADNMLDQQGLGDQSMRIKHLLPRNTQIVLFSATFSERVEKYA 304
Query: 447 SRTLKNPIQITINSKSLINENIQQRVQIFDEEHVKFEFLLKRLSDRLALHRGEDEKTIIF 506
R N +I + ++ L E I+Q E K+ L++ L L + ++IIF
Sbjct: 305 ERFAPNANEIRLKTEELSVEGIKQLYMDCQSEEHKYNVLVE-LYGLLTI-----GQSIIF 358
Query: 507 VGSQQXXXXXXXXXXXNGITTFPIHAGKPSAERLRNLQKFKETDNGILICTEVLSRGLNV 566
+ +G T + A+R + F+ + +L+ T V++RG++V
Sbjct: 359 CKKKDTAEEIARRMTADGHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTNVIARGIDV 418
Query: 567 PEVSLVIIYN 576
+V+LV+ Y+
Sbjct: 419 SQVNLVVNYD 428
>SPBC21H7.04 [A] KOG0348 ATP-dependent RNA helicase
Length = 709
Score = 114 bits (285), Expect = 6e-25
Identities = 115/486 (23%), Positives = 206/486 (41%), Gaps = 67/486 (13%)
Query: 221 KDVEELRLSLDNIKISGKDCPKPVTKWSQLGLSSEIMDLISNELQFVTLTPIQCQAIPAI 280
+++E+ ++S + P T ++ + L +++ D ++N++ T IQ +PA+
Sbjct: 114 QNLEDNQISNIGTTKEASNAPIKTTNFAGVQLDTQLADHLNNKMNISAPTAIQSCCLPAL 173
Query: 281 MS--GRDVIGISKTGSGKTVAFLLPLVRQIKAQPP-LAPDETGPIGLILTPTRELAVQIQ 337
++ +D ++TGSGKT+A+LLP+V+++ P L +G +I+ PTREL QI
Sbjct: 174 LNTDDKDAFIEAQTGSGKTLAYLLPIVQRLIRLPKNLHTRTSGIYAVIMAPTRELCQQIY 233
Query: 338 EEALKFCKXXXXXXXXX---XXXXELKQQINELKRGVDIIVATPGRFIDLMTLNSGHLLS 394
A K + K + +++GV+I++ TPGR D L + L
Sbjct: 234 NVANKLNNNPLSHWIVSCNVIGGEKKKSEKARIRKGVNILIGTPGRLAD--HLENTEALD 291
Query: 395 PTRISFVVMDEADRLFDLGFGPQVNQIMGCIRPD-------------KQCVLFSATFPSK 441
+++ +VV+DE DRL D+GF + +I+ + K +L SAT
Sbjct: 292 VSQVRWVVLDEGDRLMDMGFEETLTKILSYLESQSSIIKKDLSIPSRKVTMLCSATMKDT 351
Query: 442 LKHFASRTLKNPIQITINSKSLINENIQQRVQIFDEEHVKF--EFLLKRLSDRLALHRGE 499
+K + LK+ + + + N+ Q + + +V + L L L H
Sbjct: 352 VKRLSDSALKDALYLKSSIVEETNDGYSQAPEQLLQRYVVVPPKLRLVSLVALLRSHVRS 411
Query: 500 DEKTIIFVG------------------------------SQQXXXXXXXXXXXNG-ITTF 528
+K IIF+ S+ +G +
Sbjct: 412 YKKIIIFLSCSDSVDFHFEAFRCAINADEMEEAVKEKPDSEGDIISNAPALRIDGKSNVY 471
Query: 529 PIHAGKPSAERLRNLQKFKETDNG---ILICTEVLSRGLNVPEVSLVIIYNAAKTIAQYV 585
+H R L F +++ IL+CT+V +RGL++P V LV+ Y+A + Y+
Sbjct: 472 RLHGSLSQQIRTSTLNLFSSSEDSGSHILLCTDVAARGLDLPNVDLVVQYDAPFSTDDYL 531
Query: 586 HXXXXXXXXXXXXXALSFVMVDELASAYI-LVKCMKENELSSVPMVVYQKLKEMNDEFSS 644
H A+ F++ E S YI L+K SSV + ++ + S+
Sbjct: 532 HRIGRTARAGHNGAAIMFLLPKE--SEYINLLK-------SSVSANILEQPNGPSGLLSA 582
Query: 645 GLKTGK 650
G GK
Sbjct: 583 GFSQGK 588
>At1g72730 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 414
Score = 113 bits (283), Expect = 1e-24
Identities = 88/337 (26%), Positives = 148/337 (43%), Gaps = 15/337 (4%)
Query: 272 IQCQAIPAIMSGRDVIGISKTGSGKTVAFLLPLVRQIKAQPPLAPDETGPIGLILTPTRE 331
IQ + I G DVI +++G+GKT F +++Q+ L+L PTRE
Sbjct: 67 IQQRGIIPFCKGLDVIQQAQSGTGKTATFCSGVLQQLDISLVQCQ------ALVLAPTRE 120
Query: 332 LAVQIQEEALKFCKXXXXXXXXXXXXXELKQQINELKRGVDIIVATPGRFIDLMTLNSGH 391
LA QI++ +++ L+ GV ++V TPGR DL+ S
Sbjct: 121 LAQQIEKVMRALGDYLGVKAQACVGGTSVREDQRVLQSGVHVVVGTPGRVFDLLRRQS-- 178
Query: 392 LLSPTRISFVVMDEADRLFDLGFGPQVNQIMGCIRPDKQCVLFSATFPSKLKHFASRTLK 451
L I V+DEAD + GF Q+ I + Q +FSAT P + + +
Sbjct: 179 -LRADAIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKVQVGVFSATMPPEALEITRKFMN 237
Query: 452 NPIQITINSKSLINENIQQRVQIFDEEHVKFEFLLKRLSDRLALHRGEDEKTIIFVGSQQ 511
P++I + L E I+Q D+E K E L L + LA+ +++IFV +++
Sbjct: 238 KPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCD-LYETLAI-----TQSVIFVNTRR 291
Query: 512 XXXXXXXXXXXNGITTFPIHAGKPSAERLRNLQKFKETDNGILICTEVLSRGLNVPEVSL 571
T H R +++F+ + +LI T++L+RG++V +VSL
Sbjct: 292 KVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSL 351
Query: 572 VIIYNAAKTIAQYVHXXXXXXXXXXXXXALSFVMVDE 608
VI ++ Y+H A++F+ ++
Sbjct: 352 VINFDLPTQPENYLHRIGRSGRFGRKGVAINFMTSED 388
>Hs4758112 [A] KOG0329 ATP-dependent RNA helicase
Length = 428
Score = 112 bits (281), Expect = 2e-24
Identities = 92/361 (25%), Positives = 166/361 (45%), Gaps = 20/361 (5%)
Query: 272 IQCQAIPAIMSGRDVIGISKTGSGKTVAFLLPLVRQIKAQPPLAPDETGPIG-LILTPTR 330
+Q + IP + G DV+ +K+G GKT F+L ++Q++ TG + L++ TR
Sbjct: 71 VQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPV-------TGQVSVLVMCHTR 123
Query: 331 ELAVQIQEEALKFCKXX-XXXXXXXXXXXELKQQINELKRGVD-IIVATPGRFIDLMTLN 388
ELA QI +E +F K +K+ LK+ I+V TPGR + L
Sbjct: 124 ELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNK 183
Query: 389 SGHLLSPTRISFVVMDEADRLFD-LGFGPQVNQIMGCIRPDKQCVLFSATFPSKLKHFAS 447
S L+ I ++DE D++ + L V +I +KQ ++FSAT +++
Sbjct: 184 S---LNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCR 240
Query: 448 RTLKNPIQITINSKSLINENIQQRVQIFDEEHVKFEFLLKRLSDRLALHRGEDEKTIIFV 507
+ +++P++I ++ ++ + + Q+ + +++ K ++L D L + E + +IFV
Sbjct: 241 KFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKN----RKLFDLLDVL--EFNQVVIFV 294
Query: 508 GSQQXXXXXXXXXXXNGITTFPIHAGKPSAERLRNLQKFKETDNGILICTEVLSRGLNVP 567
S Q IH G P ERL Q+FK+ IL+ T + RG+++
Sbjct: 295 KSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIE 354
Query: 568 EVSLVIIYNAAKTIAQYVHXXXXXXXXXXXXXALSFVMVDELASAYILVKCMKENELSSV 627
V++ Y+ + Y+H A++FV + A V+ E +S +
Sbjct: 355 RVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISEL 414
Query: 628 P 628
P
Sbjct: 415 P 415
>Hs21040371 [A] KOG0329 ATP-dependent RNA helicase
Length = 427
Score = 112 bits (281), Expect = 2e-24
Identities = 90/338 (26%), Positives = 155/338 (45%), Gaps = 22/338 (6%)
Query: 272 IQCQAIPAIMSGRDVIGISKTGSGKTVAFLLPLVRQIKAQPPLAPDETGPIGLILTPTRE 331
+Q + IP + G DV+ +K+G GKT F+L ++QI+ P L++ TRE
Sbjct: 70 VQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIE------PVNGQVTVLVMCHTRE 123
Query: 332 LAVQIQEEALKFCKXX-XXXXXXXXXXXELKQQINELKRGVD-IIVATPGRFIDLMTLNS 389
LA QI +E +F K +K+ LK+ ++V TPGR + L+ S
Sbjct: 124 LAFQISKEYERFSKYMPSVKVSVFFGGLSIKKDEEVLKKNCPHVVVGTPGRILALVRNRS 183
Query: 390 GHLLSPTRISFVVMDEADRLFD-LGFGPQVNQIMGCIRPDKQCVLFSATFPSKLKHFASR 448
S + V+DE D++ + L V +I +KQC++FSAT ++ +
Sbjct: 184 ---FSLKNVKHFVLDECDKMLEQLDMRRDVQEIFRLTPHEKQCMMFSATLSKDIRPVCRK 240
Query: 449 TLKNPIQITINSKSLIN-ENIQQR-VQIFDEEHVKFEFLLKRLSDRLALHRGEDEKTIIF 506
+++P+++ ++ ++ + +QQ V++ D E + +L D L + E + IIF
Sbjct: 241 FMQDPMEVFVDDETKLTLHGLQQYYVKLKDSEKNR------KLFDLLDVL--EFNQVIIF 292
Query: 507 VGSQQXXXXXXXXXXXNGITTFPIHAGKPSAERLRNLQKFKETDNGILICTEVLSRGLNV 566
V S Q IH G ERL Q+FK+ IL+ T + RG+++
Sbjct: 293 VKSVQRCMALAQLLVEQNFPAIAIHRGMAQEERLSRYQQFKDFQRRILVATNLFGRGMDI 352
Query: 567 PEVSLVIIYNAAKTIAQYVHXXXXXXXXXXXXXALSFV 604
V++V Y+ + Y+H A++FV
Sbjct: 353 ERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFV 390
>CE03821 [A] KOG0345 ATP-dependent RNA helicase
Length = 578
Score = 112 bits (279), Expect = 3e-24
Identities = 93/370 (25%), Positives = 170/370 (45%), Gaps = 28/370 (7%)
Query: 252 LSSEIMDLISNELQFVTLTPIQCQAIPAIMSGRDVIGISKTGSGKTVAFLLPLVRQIKAQ 311
L E++++ + + T +Q + +++ DV+ S TGSGKT+AF+LP++R I+
Sbjct: 17 LGPELLEVFDKS--YKSFTDVQVLSGTHLLNLSDVVVESPTGSGKTLAFVLPMMRMIQ-N 73
Query: 312 PPLAPDETGPIGLILTPTRELAVQIQEEALKFCKXXXXXXXXXXXXXELKQQINELK-RG 370
L P + G LIL+P+REL QI F + ++ + I K +
Sbjct: 74 AKLQPADIG--ALILSPSRELCSQIVSVIQPFAEKLNLTVETVTGGQKVDKNIKMFKNKN 131
Query: 371 VDIIVATPGRFIDLMTLNSGHLLSPTR-ISFVVMDEADRLFDLGFGPQVNQIMGCIRPDK 429
V+I+VATPGR ++ + R + +V+DEADR ++ F + +I+ CI +
Sbjct: 132 VNILVATPGRLFQIIQHEKTLIARKMRTLQLLVIDEADRFNEIQFEDHMREILSCIPKQR 191
Query: 430 QCVLFSATFPSKLKHFASRTLKNPIQITINSK-------SLINENIQQRVQIFDEEHVKF 482
+ LFSAT + L+N Q+ + + +L N ++ R ++ V
Sbjct: 192 RTGLFSATQVKEEDDLMVFGLRNAKQVKVAQERNSAAPSTLKNYYVECRAD--EKTSVCL 249
Query: 483 EFLLKRLSDRLALHRGEDEKTIIFVGSQQXXXXXXXXXXX--NGITTFPIHAGKPSAERL 540
EF+ +R D+K +IF S F +H + R
Sbjct: 250 EFIRQRT----------DKKILIFFPSCNSVRYFYKIFERCLGKRPLFAVHGKCSNPHRA 299
Query: 541 RNLQKFKETDNGILICTEVLSRGLNVPEVSLVIIYNAAKTIAQYVHXXXXXXXXXXXXXA 600
++ F ++ NG++I T+V++RG+++ ++ VI ++ K + +VH A
Sbjct: 300 SQIKAFSDSTNGVMISTDVMARGIDISDIDWVIQFDLPKHSSWFVHRAGRTARCGREGNA 359
Query: 601 LSFVMVDELA 610
L + ++LA
Sbjct: 360 LILIASEQLA 369
>Hs20551983 [A] KOG0345 ATP-dependent RNA helicase
Length = 325
Score = 109 bits (273), Expect = 1e-23
Identities = 72/214 (33%), Positives = 115/214 (53%), Gaps = 8/214 (3%)
Query: 263 ELQFVTLTPIQCQAIPAIMSGRDVIGISKTGSGKTVAFLLPLVR-QIKAQPPLAPDETGP 321
EL F +TP+Q IP M +DV + TGSGKT+AF++P++ ++ + L + G
Sbjct: 26 ELGFPYMTPVQSATIPLFMRNKDVAAEAVTGSGKTLAFVIPILEILLRREEKLKKSQVGA 85
Query: 322 IGLILTPTRELAVQIQEEALKFCKXXXXXXXXXXXXXELK-QQINELKR-GVDIIVATPG 379
I I+TPTRELA+QI E F K + + K+ G +IIVATPG
Sbjct: 86 I--IITPTRELAIQIDEVLSHFTKHFPEFSQILWIGGRNPGEDVERFKQQGGNIIVATPG 143
Query: 380 RFIDLMTLNSG--HLLSPTR-ISFVVMDEADRLFDLGFGPQVNQIMGCIRPDKQCVLFSA 436
R D+ + L S R + +V+DEADRL D+GF +N I+ + ++ LFSA
Sbjct: 144 RLEDMFRRKAEGLDLASCVRSLDVLVLDEADRLLDMGFEASINTILEFLPKQRRTGLFSA 203
Query: 437 TFPSKLKHFASRTLKNPIQITINSKSLINENIQQ 470
T ++++ L+NP+++++ K + + Q+
Sbjct: 204 TQTQEVENLVRAGLRNPVRVSVKEKGVAASSAQK 237
>7295505 [A] KOG0346 RNA helicase
Length = 560
Score = 109 bits (273), Expect = 1e-23
Identities = 96/391 (24%), Positives = 168/391 (42%), Gaps = 37/391 (9%)
Query: 246 KWSQLGLSSEIMDLISNELQFVTLTPIQCQAIPAIMSGRDVIGISKTGSGKTVAFLLPLV 305
++ +L L I+ ++ +L + T IQ AIP ++ G+DV+ ++TGSGKT + LPL+
Sbjct: 10 QFHELELDQRILKAVA-QLGWQQPTLIQSTAIPLLLEGKDVVVRARTGSGKTATYALPLI 68
Query: 306 RQIKAQPPLAPDETGPIGLILTPTRELAVQ---IQEEALKFCKXXXXXXXXXXXXXELKQ 362
++I L E ++L PT++L Q + E+ ++ C +
Sbjct: 69 QKI-LNSKLNASEQYVSAVVLAPTKKLCRQSRKVIEQLVESCGKVVRVADIADSSNDTVT 127
Query: 363 QINELKRGVDIIVATPGRFIDLMTLNSGHLLSPTRISFVVMDEADRLFDLGFGPQVNQIM 422
Q + L DI+VATP L +G ++ + +V+DEAD +F G+ +++
Sbjct: 128 QRHALSESPDIVVATPANL--LAYAEAGSVVDLKHVETLVVDEADLVFAYGYEKDFKRLI 185
Query: 423 GCIRPDKQCVLFSATFPSKLKHFASRTLKNPIQITINSKSLINENIQQRVQIFDEEHVKF 482
+ P Q VL SAT + L NP+ + + L+ ++ +I EE+ K
Sbjct: 186 KHLPPIYQAVLVSATLTDDVVRMKGLCLNNPVTLKLEEPELVPQDQLSHQRILAEENDKP 245
Query: 483 EFLLKRLSDRLALHRGEDEKTIIFVGSQQXXXXXXXXXXXNGITTFPIHAGKPSAERLRN 542
L L +L L RG K+IIFV S GI +++ P+ R+
Sbjct: 246 AILYALL--KLRLIRG---KSIIFVNSIDRCYKVRLFLEQFGIRACVLNSELPANIRIHT 300
Query: 543 LQKFKETDNGILICTE-------------------------VLSRGLNVPEVSLVIIYNA 577
+ +F + I+I ++ SRG++ V+ VI ++
Sbjct: 301 ISQFNKGTYDIIIASDEHHMEKPGGKSATNRKSPRSGDMESSASRGIDFQCVNNVINFDF 360
Query: 578 AKTIAQYVHXXXXXXXXXXXXXALSFVMVDE 608
+ + Y+H LSFV + E
Sbjct: 361 PRDVTSYIHRAGRTARGNNKGSVLSFVSMKE 391
>At5g11170 [A] KOG0329 ATP-dependent RNA helicase
Length = 435
Score = 109 bits (272), Expect = 2e-23
Identities = 89/338 (26%), Positives = 154/338 (45%), Gaps = 22/338 (6%)
Query: 272 IQCQAIPAIMSGRDVIGISKTGSGKTVAFLLPLVRQIKAQPPLAPDETGPIGLILTPTRE 331
+Q + IP + G DVI +K+G GKT F+L ++QI+ P L+L TRE
Sbjct: 72 VQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPSPGQVS------ALVLCHTRE 125
Query: 332 LAVQIQEEALKFCKXX-XXXXXXXXXXXELKQQINELKRGVD-IIVATPGRFIDLMTLNS 389
LA QI E ++F +K + LK I+V TPGR + L
Sbjct: 126 LAYQICNEFVRFSTYLPDTKVSVFYGGVNIKIHKDLLKNECPHIVVGTPGRVLALAREKD 185
Query: 390 GHLLSPTRISFVVMDEADRLFD-LGFGPQVNQIMGCIRPDKQCVLFSATFPSKLKHFASR 448
LS + ++DE D++ + L V +I DKQ ++FSAT +++ +
Sbjct: 186 ---LSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKK 242
Query: 449 TLKNPIQITIN--SKSLINENIQQRVQIFDEEHVKFEFLLKRLSDRLALHRGEDEKTIIF 506
+++P++I ++ +K ++ +Q +++ + E + L L D L ++ +IF
Sbjct: 243 FMQDPMEIYVDDEAKLTLHGLVQHYIKLSEMEKTR---KLNDLLDALDFNQ-----VVIF 294
Query: 507 VGSQQXXXXXXXXXXXNGITTFPIHAGKPSAERLRNLQKFKETDNGILICTEVLSRGLNV 566
V S + IH+G ERL + FKE IL+ T+++ RG+++
Sbjct: 295 VKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKSFKEGHKRILVATDLVGRGIDI 354
Query: 567 PEVSLVIIYNAAKTIAQYVHXXXXXXXXXXXXXALSFV 604
V++VI Y+ + Y+H A++FV
Sbjct: 355 ERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFV 392
>SPBC691.04 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 535
Score = 108 bits (271), Expect = 3e-23
Identities = 99/353 (28%), Positives = 157/353 (44%), Gaps = 17/353 (4%)
Query: 246 KWSQLGLSSEIMDLIS---NELQ---FVTLTPIQCQAIPAIMSGRD-VIGISKTGSGKTV 298
K Q L SE+ L S N L F +TP+Q + + + + + +KTG+GKT+
Sbjct: 32 KSQQPTLFSEVASLSSTFKNSLSRAGFEKMTPVQQRVLNEVFPNEENAVVQAKTGTGKTL 91
Query: 299 AFLLPLVRQI-KAQPPLAPDETGPIGLILTPTRELAVQIQEEALKFCKXXXXXXXXXXXX 357
AFLL + + K +P L + + IL+PTRELA+QI EEA K
Sbjct: 92 AFLLVAFKDVLKGKPRLNSSKIHSV--ILSPTRELALQIFEEARKLTYGTGIRVSYAIGG 149
Query: 358 XELKQQINELKRG-VDIIVATPGRFIDLMTLNSGHLLSPTRISFVVMDEADRLFDLGFGP 416
++ N ++RG ++++ATPGR D L + +L ++DEADRL D+GF
Sbjct: 150 NSKMREENAIRRGNANLLIATPGRLED--HLQNPRILESLSTDSFILDEADRLMDMGFAE 207
Query: 417 QVNQIMGCIRPDK-QCVLFSATFPSKLKHFASRTLKNPIQITINSKSLINENIQQRVQIF 475
+ I + K + + FSAT P K+ + L ++ IN +RV F
Sbjct: 208 SILNIHEAVTTTKTRKLCFSATMPPKVSNVFRGILGTDFKL-INCLDPNEPPTHERVPQF 266
Query: 476 DEEHVKFEFLLKRLSDRLALHRGEDEKTIIFVGSQQXXXXXXXXXXXN--GITTFPIHAG 533
E + LS L II N I F +H+G
Sbjct: 267 VIETKLDKVFSSSLSLLQQLTSSNPSSRIIVFLPTISMVDFVGGVLENHLKIPCFILHSG 326
Query: 534 KPSAERLRNLQKFKETDNGILICTEVLSRGLNVPEVSLVIIYNAAKTIAQYVH 586
+A+R + F++ +GIL T+V++RG++ P ++ V+ Y+H
Sbjct: 327 LTTAQRRSITESFRKCQSGILFATDVVARGMDFPNITQVVQITGPSNTDDYIH 379
>At5g11200 [A] KOG0329 ATP-dependent RNA helicase
Length = 427
Score = 108 bits (271), Expect = 3e-23
Identities = 89/339 (26%), Positives = 155/339 (45%), Gaps = 24/339 (7%)
Query: 272 IQCQAIPAIMSGRDVIGISKTGSGKTVAFLLPLVRQIKAQPPLAPDETGPIGLILTPTRE 331
+Q + IP + G DVI +K+G GKT F+L ++QI+ P L+L TRE
Sbjct: 72 VQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPSPGQVS------ALVLCHTRE 125
Query: 332 LAVQIQEEALKFCKXX-XXXXXXXXXXXELKQQINELKRGVD-IIVATPGRFIDLMTLNS 389
LA QI E ++F +K + LK I+V TPGR + L
Sbjct: 126 LAYQICNEFVRFSTYLPDTKVSVFYGGVNIKIHKDLLKNECPHIVVGTPGRVLALAREKD 185
Query: 390 GHLLSPTRISFVVMDEADRLFD-LGFGPQVNQIMGCIRPDKQCVLFSATFPSKLKHFASR 448
LS + ++DE D++ + L V +I DKQ ++FSAT +++ +
Sbjct: 186 ---LSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKK 242
Query: 449 TLKNPIQITIN--SKSLINENIQQRVQIFD-EEHVKFEFLLKRLSDRLALHRGEDEKTII 505
+++P++I ++ +K ++ +Q +++ + E++ K LL L + + +I
Sbjct: 243 FMQDPMEIYVDDEAKLTLHGLVQHYIKLSEMEKNRKLNDLLDAL---------DFNQVVI 293
Query: 506 FVGSQQXXXXXXXXXXXNGITTFPIHAGKPSAERLRNLQKFKETDNGILICTEVLSRGLN 565
FV S + IH+G ERL + FKE IL+ T+++ RG++
Sbjct: 294 FVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKSFKEGHKRILVATDLVGRGID 353
Query: 566 VPEVSLVIIYNAAKTIAQYVHXXXXXXXXXXXXXALSFV 604
+ V++VI Y+ + Y+H A++FV
Sbjct: 354 IERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFV 392
>At4g16630 [A] KOG0338 ATP-dependent RNA helicase
Length = 683
Score = 108 bits (270), Expect = 3e-23
Identities = 113/453 (24%), Positives = 189/453 (40%), Gaps = 85/453 (18%)
Query: 270 TPIQCQAIPAIMSGRDVIGISKTGSGK--------------------TVAFLLPLVRQIK 309
TPIQ Q IP RD+ + TGSGK T AF LP + ++
Sbjct: 191 TPIQVQFIP--QEWRDLCASAITGSGKVSTRLMVLCNTEILFRYLTNTAAFALPTLERLL 248
Query: 310 AQPPLAPDETGPIGLILTPTRELAVQIQEEALKFCKXXXXXXXXXXXXXELKQQINELKR 369
+P LILTPTRELAVQI + +++Q L+
Sbjct: 249 FRPKRV---FATRVLILTPTRELAVQIHSMIQNLAQFTDIKCGLIVGGLSVREQEVVLRS 305
Query: 370 GVDIIVATPGRFIDLMTLNSGHLLSPTRISFVVMDEADRLFDLGFGPQVNQIMGCIRPDK 429
DI+VATPGR ID L + + ++ +++DEADRL GF ++ +++ +
Sbjct: 306 MPDIVVATPGRMID--HLRNSMSVDLDDLAVLILDEADRLLQTGFATEITELVRLCPKRR 363
Query: 430 QCVLFSATFPSKLKHFASRTLKNPIQITINSKSLINENIQQRVQIFDEEHVKFEFLLKRL 489
Q +LFSAT ++K +L P++++ + + +R EE+++ EF +
Sbjct: 364 QTMLFSATMTEEVKELVKLSLNKPLRLSADPSA-------RRPPGLTEEYLR-EFFVPSC 415
Query: 490 SDRLALHRGEDEKTIIFVGSQQXXXXXXXXXXXNGITTFPIHAGKPSAERL--RN----- 542
+ G++Q G+ +H A+RL RN
Sbjct: 416 AS----------------GTKQAAHRLKILFGLAGLKAAELHGNLTQAQRLDVRNLGTSA 459
Query: 543 ---LQKFKETDNGILICTEVLSRGLNVPEVSLVIIYNAAKTIAQYVHXXXXXXXXXXXXX 599
L+ F++ + LI T+V +RGL++ V VI Y + I YVH
Sbjct: 460 LFSLELFRKQEVDFLIATDVAARGLDIIGVQTVINYACPREIDSYVHRVGRTARAGREGY 519
Query: 600 ALSFV------MVDELASAYILVKCMKENELSS------VP----MVVYQKLKEMNDEFS 643
A++FV ++ + L C+K ++ S +P + Q + EM D++S
Sbjct: 520 AVTFVTDSDRSLLKVITFESTLFLCLKAKKVGSKLKSRVIPEQSIVKWSQIIDEMEDQYS 579
Query: 644 SGLKTGKY--RLIQGFGGKG------LDHLDEL 668
+ + ++ + +G G L+H DE+
Sbjct: 580 AVISAERFHSHSSKNYGIPGELAENMLEHRDEI 612
>7296990 [A] KOG0329 ATP-dependent RNA helicase
Length = 424
Score = 108 bits (269), Expect = 4e-23
Identities = 91/360 (25%), Positives = 162/360 (44%), Gaps = 17/360 (4%)
Query: 272 IQCQAIPAIMSGRDVIGISKTGSGKTVAFLLPLVRQIKAQPPLAPDETGPIGLILTPTRE 331
+Q + IP + G D++ +K+G GKT F+L ++Q++ D L++ TRE
Sbjct: 67 VQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLEPS-----DNNTCHVLVMCHTRE 121
Query: 332 LAVQIQEEALKFCKXXXXXXXXXXXXXELKQQINE-LKRGVD-IIVATPGRFIDLMTLNS 389
LA QI +E +F K Q+ E LK G I+V TPGR + L+
Sbjct: 122 LAFQISKEYERFSKYMPTVKVAVFFGGMAIQKDEETLKSGTPHIVVGTPGRILALIRNKK 181
Query: 390 GHLLSPTRISFVVMDEADRLFD-LGFGPQVNQIMGCIRPDKQCVLFSATFPSKLKHFASR 448
L+ + V+DE D++ + L V +I KQ ++FSAT ++ +
Sbjct: 182 ---LNLKLLKHFVLDECDKMLEQLDMRRDVQEIFRSTPHGKQVMMFSATLSKDIRPVCKK 238
Query: 449 TLKNPIQITINSKSLINENIQQRVQIFDEEHVKFEFLLKRLSDRLALHRGEDEKTIIFVG 508
+++P+++ ++ ++ + + Q+ + +E+ K + L + L D L E + +IFV
Sbjct: 239 FMQDPMEVYVDDEAKLTLHGLQQHYVNLKENEKNKKLFELL-DVL-----EFNQVVIFVK 292
Query: 509 SQQXXXXXXXXXXXNGITTFPIHAGKPSAERLRNLQKFKETDNGILICTEVLSRGLNVPE 568
S Q IH G ERL Q+FK+ IL+ T + RG+++
Sbjct: 293 SVQRCVALSQLLTEQNFPAIGIHRGMTQEERLNRYQQFKDFQKRILVATNLFGRGMDIER 352
Query: 569 VSLVIIYNAAKTIAQYVHXXXXXXXXXXXXXALSFVMVDELASAYILVKCMKENELSSVP 628
V++V Y+ + Y+H A++FV + A V+ + +S +P
Sbjct: 353 VNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNEVQDRFDVNISELP 412
>CE03025 [A] KOG0329 ATP-dependent RNA helicase
Length = 425
Score = 105 bits (263), Expect = 2e-22
Identities = 91/357 (25%), Positives = 162/357 (44%), Gaps = 21/357 (5%)
Query: 252 LSSEIMDLISNELQFVTLTPIQCQAIPAIMSGRDVIGISKTGSGKTVAFLLPLVRQIKAQ 311
L EI+ I + F + +Q + IP + G DV+ +K+G GKT F++ ++Q++
Sbjct: 48 LKPEILRAIG-DCGFEHPSEVQHECIPQAILGMDVVCQAKSGMGKTAVFVITTLQQLEPV 106
Query: 312 PPLAPDETGPIGLI-LTPTRELAVQIQEEALKFCKXX-XXXXXXXXXXXELKQQINELKR 369
G + ++ + TRELA QI +E +F K +K+ L
Sbjct: 107 D-------GEVSVVCMCHTRELAFQISKEYERFSKYLPGVKVAVFFGGMAIKKDEERLAN 159
Query: 370 GVD-IIVATPGRFIDLMTLNSGHLLSPTRISFVVMDEADRLF-DLGFGPQVNQIMGCIRP 427
I+V TPGR + L SG L ++ + V+DE D++ D V +I+
Sbjct: 160 DCPHIVVGTPGRMLALA--RSGKL-KLDKVKYFVLDECDKMIGDADMRRDVQEIVKMTPQ 216
Query: 428 DKQCVLFSATFPSKLKHFASRTLKNPIQITINSKSLINENIQQRVQIFDEEHVKFEFLLK 487
KQ ++FSAT P +L+ R +++P+++ ++ ++ + + Q+ + +E K LL
Sbjct: 217 QKQVMMFSATLPKELRTVCKRFMQDPMEVYVDDEAKLTLHGLQQHYVKLKEAEKNRRLLN 276
Query: 488 RLSDRLALHRGEDEKTIIFVGSQQXXXXXXXXXXXNGITTFPIHAGKPSAERLRNLQKFK 547
L D L E + +IFV + + + IH ERL Q FK
Sbjct: 277 LL-DAL-----EFNQVVIFVKAVKRCEALHQLLTEQNFPSIAIHRQMAQEERLSRYQAFK 330
Query: 548 ETDNGILICTEVLSRGLNVPEVSLVIIYNAAKTIAQYVHXXXXXXXXXXXXXALSFV 604
+ IL+ T++ RG+++ V++V Y+ + Y+H A++FV
Sbjct: 331 DFQKRILVATDLFGRGMDIERVNIVFNYDMPEDSDSYLHRVARAGRFGTKGLAITFV 387
>Hs9966805 [A] KOG0347 RNA helicase
Length = 859
Score = 105 bits (262), Expect = 3e-22
Identities = 81/325 (24%), Positives = 151/325 (45%), Gaps = 26/325 (8%)
Query: 322 IGLILTPTRELAVQIQEEALKFCKXXXXXXXXXXXXXELKQQINELKRGVDIIVATPGRF 381
+GL+LTPTRELAVQ+++ + ++Q L R +I+VATPGR
Sbjct: 389 LGLVLTPTRELAVQVKQHIDAVARFTGIKTAILVGGMSTQKQQRMLNRRPEIVVATPGRL 448
Query: 382 IDLMTLNSGHLLSPTRISFVVMDEADRLFDLGFGPQVNQIMGCIR-----PDKQCVLFSA 436
+L+ HL + ++ +V+DEADR+ + G +++Q++ + P +Q ++FSA
Sbjct: 449 WELIKEKHYHLRNLRQLRCLVVDEADRMVEKGHFAELSQLLEMLNDSQYNPKRQTLVFSA 508
Query: 437 TFPSKLKHFASRTLKNPIQITINSKSLINENIQQRVQIFDEEHV----KFEFLLKRLSDR 492
T L H A + + K+ + + Q++ + + V + E ++ L++
Sbjct: 509 TLT--LVHQAPARILHKKHTKKMDKTAKLDLLMQKIGMRGKPKVIDLTRNEATVETLTET 566
Query: 493 LALHRGEDEK--------------TIIFVGSQQXXXXXXXXXXXNGITTFPIHAGKPSAE 538
+H DEK +++F S I +HA +
Sbjct: 567 -KIHCETDEKDFYLYYFLMQYPGRSLVFANSISCIKRLSGLLKVLDIMPLTLHACMHQKQ 625
Query: 539 RLRNLQKFKETDNGILICTEVLSRGLNVPEVSLVIIYNAAKTIAQYVHXXXXXXXXXXXX 598
RLRNL++F ++ +L+ T+V +RGL++P+V VI Y +T YVH
Sbjct: 626 RLRNLEQFARLEDCVLLATDVAARGLDIPKVQHVIHYQVPRTSEIYVHRSGRTARATNEG 685
Query: 599 XALSFVMVDELASAYILVKCMKENE 623
+L + +++ + + K +K++E
Sbjct: 686 LSLMLIGPEDVINFKKIYKTLKKDE 710
>Hs22054507 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 729
Score = 105 bits (261), Expect = 4e-22
Identities = 91/328 (27%), Positives = 151/328 (45%), Gaps = 66/328 (20%)
Query: 263 ELQFVTLTPIQCQAIPAIMSGRDVIGISKTGSGKTVAFLLPLVRQIKAQPPLAPDETGPI 322
E+ F+ +T IQ + I +++ GRD++ +KTGS + L ++K P P
Sbjct: 386 EMSFMNMTEIQHKTIRSLLEGRDLLAAAKTGS-------VELTVKLKFMPTNRPGV---- 434
Query: 323 GLILTPTRELAVQIQEEALKFCKXXXXXXXXXXXXXELKQQINELKRGVDIIVATPGRFI 382
IL+PTRELA+QI A + +L G++IIVATPG +
Sbjct: 435 -FILSPTRELAMQIFGGANTH---HMHTYGLIMGGDNTSAEAQKLANGINIIVATPGHLL 490
Query: 383 DLMTLNSGHLLSPTRISFVVMDEADRLFDLGFGPQVNQIMGCIRPDKQCVLFSATFPSKL 442
D M G + + ++V+DEADR+ D+GF ++ QI+ + + +L SAT K+
Sbjct: 491 DYMQNTPGFMYK--NLQYLVIDEADRILDVGFEEELKQIIKLLPTCRHTMLLSATQTRKV 548
Query: 443 KHFASRTLKNPIQITINSKSLINENIQQRVQIF--DEEHVKFEFLLKRLSDR--LALHRG 498
+ A +LK K I +N ++++ +F VK+ + L D LA+H
Sbjct: 549 EDLARISLK---------KGAI-KNRKRKIMVFFSSSMSVKYHYELLNYMDLPILAIH-- 596
Query: 499 EDEKTIIFVGSQQXXXXXXXXXXXNGITTFPIHAGKPSAERLRNLQKFKETDNGILICTE 558
G Q+ G TTF +F + D+GIL+C +
Sbjct: 597 ---------GKQK---------QNKGTTTF---------------FQFCKADSGILLCMD 623
Query: 559 VLSRGLNVPEVSLVIIYNAAKTIAQYVH 586
V +RGL++PEV ++ ++ +Y+H
Sbjct: 624 VAARGLDIPEVDWIVQHDPLDDPKEYIH 651
>CE29052 [A] KOG0335 ATP-dependent RNA helicase
Length = 1156
Score = 105 bits (261), Expect = 4e-22
Identities = 90/323 (27%), Positives = 151/323 (45%), Gaps = 20/323 (6%)
Query: 270 TPIQCQAIPAIMSGRDVIGISKTGSGKTVAFLLP----LVRQIKAQPPLAPDETGPIGLI 325
TPIQ + IM G DV+ + TGSGKT+AFL+P L+ + + + ++ P LI
Sbjct: 760 TPIQRASFFPIMHGNDVVACAHTGSGKTLAFLIPFVIKLMEEFEKDRDVTDEKPSPRLLI 819
Query: 326 LTPTRELAVQIQEEALKFCKXXXXXXXXXXXXXELKQQINELK--RGVDIIVATPGRFID 383
+ PTREL Q A + + L+ ++I+VAT GR D
Sbjct: 820 VAPTRELVNQTFTTARQLTYETGLKCGLAFGGYSRNANVQHLRSFSQLNILVATMGRLQD 879
Query: 384 LMTLNSGHLLSPTRISFVVMDEADRLFDLG-FGPQVNQIMGCI-RPDKQCVLFSATFPSK 441
+N+G +S +++ ++V+DEADR+ D FG +V++I+G +Q VLFSA+F
Sbjct: 880 F--VNAGE-VSLSKMKYIVLDEADRMVDSNDFGEEVSKIIGSPGERTQQTVLFSASFSED 936
Query: 442 LK--HFASRTLKNPIQITINSKSLINENIQQRVQIFDEEHVKFEFLLKRLS------DRL 493
L+ + + ++ NE I Q++ K + + K L L
Sbjct: 937 LQSDDLPKFVKEGYTMLQVDKFGTANEKIDQKILPVPRTE-KRDAIYKLLGIDENTVTLL 995
Query: 494 ALHRGEDEKTIIFVGSQQXXXXXXXXXXXNGITTFPIHAGKPSAERLRNLQKFKETDNGI 553
E +KT+IFV S + G++T +H+ + +R R L F+
Sbjct: 996 PDAPIEKQKTLIFVNSVKFCDTLAALISSAGVSTISMHSYQNQEQRDRTLDDFRRGKYQC 1055
Query: 554 LICTEVLSRGLNVPEVSLVIIYN 576
++ + V +RGLN+ + V+ Y+
Sbjct: 1056 MVASNVCARGLNIAGLDHVVNYD 1078
>Hs9506931 [A] KOG0346 RNA helicase
Length = 547
Score = 104 bits (259), Expect = 6e-22
Identities = 95/395 (24%), Positives = 168/395 (42%), Gaps = 43/395 (10%)
Query: 247 WSQLGLSSEIMDLISNELQFVTLTPIQCQAIPAIMSGRDVIGISKTGSGKTVAFLLPLVR 306
+ +GL ++ ++ +L + T IQ +AIP + G+D++ ++TGSGKT A+ +P+++
Sbjct: 9 FEHMGLDPRLLQAVT-DLGWSRPTLIQEKAIPLALEGKDLLARARTGSGKTAAYAIPMLQ 67
Query: 307 QI---KAQPPLAPDETGPIGLILTPTRELAVQIQ---EEALKFCKXXXXXXXXXXXXXEL 360
+ KA P+ E GL+L PT+ELA Q Q ++ +C +
Sbjct: 68 LLLHRKATGPVV--EQAVRGLVLVPTKELARQAQSMIQQLATYCARDVRVANVSAAEDSV 125
Query: 361 KQQINELKRGVDIIVATPGRFIDLMTLNSGHLLSPTRISFVVMDEADRLFDLGFGPQVNQ 420
Q+ L D++V TP R L L L + +V+DEAD LF GF ++
Sbjct: 126 SQRA-VLMEKPDVVVGTPSRI--LSHLQQDSLKLRDSLELLVVDEADLLFSFGFEEELKS 182
Query: 421 IMGCIRPDKQCVLFSATFPSKLKHFASRTLKNPIQITINSKSLINENIQQRVQIFDEEHV 480
++ + Q L SATF ++ L NP+ + + L + Q+ Q+ E
Sbjct: 183 LLCHLPRIYQAFLMSATFNEDVQALKELILHNPVTLKLQESQLPGPDQLQQFQVVCETE- 241
Query: 481 KFEFLLKRLSDRLALHRGEDEKTIIFVGSQQXXXXXXXXXXXNGITTFPIHAGKPSAERL 540
+ +FLL +L+L RG K+++FV + + I T ++ P R
Sbjct: 242 EDKFLLLYALLKLSLIRG---KSLLFVNTLERSYRLRLFLEQFSIPTCVLNGELPLRSRC 298
Query: 541 RNLQKFKETDNGILICTEV---------------------------LSRGLNVPEVSLVI 573
+ +F + +I T+ ++RG++ VS V+
Sbjct: 299 HIISQFNQGFYDCVIATDAEVLGAPVKGKRRGRGPKGDKASDPEAGVARGIDFHHVSAVL 358
Query: 574 IYNAAKTIAQYVHXXXXXXXXXXXXXALSFVMVDE 608
++ T Y+H L+FV+ E
Sbjct: 359 NFDLPPTPEAYIHRAGRTARANNPGIVLTFVLPTE 393
>CE27728 [A] KOG0346 RNA helicase
Length = 634
Score = 104 bits (259), Expect = 6e-22
Identities = 98/429 (22%), Positives = 178/429 (40%), Gaps = 53/429 (12%)
Query: 224 EELRLSLDNIKISGKDCPKPVTKWSQLGLSSEIMDLISNELQFVTLTPIQCQAIPAIMSG 283
++L SL ++ D ++ GL I+ I EL + +Q I +
Sbjct: 68 QKLMESLVGPQVDEMDFEPEHKTFADFGLDERILKSIG-ELGWEKANQVQESVISLALEN 126
Query: 284 RDVIGISKTGSGKTVAFLLPLVRQIKAQPPLAPDETGPIGLILTPTRELAVQIQEEALKF 343
++++G ++TGSGKT AFL+PLV+++ A+ GP +I+ PT+EL QI + +K
Sbjct: 127 KNIMGRARTGSGKTGAFLIPLVQKLIAESKTNDGSVGPSAVIIAPTKELITQIYKLFVKL 186
Query: 344 CKXXXXXXXXXXXXXELKQQINELKRGVDIIVATPGRFIDLMTLNSGHLLSPTRISFVVM 403
+ ++ L+ ++V TPG+ + + +L + T +S++VM
Sbjct: 187 SQALPFLQAINLCDINEEENSVWLEDRSHVVVTTPGKLLRMCSLRPEYC---TLVSYLVM 243
Query: 404 DEADRLFDLGFGPQVNQIMGCIRPDKQCVLFSATFPSKLKHFASRTLKNP-IQITINSKS 462
DEAD L G+ ++ +I + P QC++ SAT + + P I I +
Sbjct: 244 DEADLLLSFGYEEEMIKIRSKLPPTYQCLMTSATLKDDMTTLKKLFMTGPVITIKLTEGD 303
Query: 463 LINENIQQRVQI---FDEEHVKFEFLLKRLSDRLALHRGEDEKTIIFVGSQQXXXXXXXX 519
L N + + Q+ DEE +F L+ +L + R +I+FV +
Sbjct: 304 LPNSDQLTQYQLTCGSDEE--RFAILVAMFKLKLIVGR-----SILFVNTIDRCYKLMLI 356
Query: 520 XXXNGITTFPIHAGKPSAERLRNLQKFKETDNGILICTEV-------------------- 559
G+ + +++ P+ R + +F E I+I ++V
Sbjct: 357 LRVFGLKSCILNSAMPANSRCHVINQFNEGSYQIVIASDVSDADGSKLKEEIAGKSDEKP 416
Query: 560 ------------------LSRGLNVPEVSLVIIYNAAKTIAQYVHXXXXXXXXXXXXXAL 601
+SRG++ VS V+ ++ +T Y+H AL
Sbjct: 417 EKDEKKGKKASKLDKESGVSRGIDFHHVSNVVNFDFPETTDAYIHRVGRTARGFNKGTAL 476
Query: 602 SFVMVDELA 610
SF + E A
Sbjct: 477 SFCIPSERA 485
>At4g34910 [A] KOG0346 RNA helicase
Length = 626
Score = 103 bits (258), Expect = 8e-22
Identities = 101/415 (24%), Positives = 176/415 (42%), Gaps = 54/415 (13%)
Query: 238 KDCPKPVTKWSQLGLSSEIMDLISNE-LQFVTLTPIQCQAIPAIMSGRDVIGISKTGSGK 296
++ PK + +LGL S ++ ++ + ++ TL IQ AIP I+ G+DV+ +KTGSGK
Sbjct: 42 EEAPK---SFEELGLDSRLIRALTKKGIEKPTL--IQQSAIPYILEGKDVVARAKTGSGK 96
Query: 297 TVAFLLPLVRQIKAQPPLAPDETGPIGLILTPTRELAVQIQEEA---LKFCKXXXXXXXX 353
T+A+LLPL++++ + ++ + P IL P+REL Q+ E ++ C+
Sbjct: 97 TLAYLLPLLQKLFSADSVSKKKLAPSAFILVPSRELCQQVYTEVSSLIELCRVQLKAVQL 156
Query: 354 XXXXXELKQQINELKRGVDIIVATPGRFIDLMTLNSGHLLSPTRI----SFVVMDEADRL 409
+ N L +I+V+TP + + +L PT + S +V+DEAD L
Sbjct: 157 TSSMSASDMR-NALAGLPEILVSTPA---CIPKCFAAGVLEPTAVSESLSILVLDEADLL 212
Query: 410 FDLGFGPQVNQIMGCIRPDKQCVLFSATFPSKLKHFASRTLKNPIQITINSKSLINENIQ 469
G+ + + I QC+L SAT S ++ L NPI +T+ + E +
Sbjct: 213 LSYGYEDNLRSVTSIIPRRCQCLLMSATTSSDVEKLKKLILHNPIVLTLTEDNDKEEAVP 272
Query: 470 QRVQIFDEEHVKFEFLLKRLSDRLALHRGEDEKTIIFVGSQQXXXXXXXXXXXNGITTFP 529
VQ F + LL L+ L +K +IF+ + GI +
Sbjct: 273 SNVQQFWISCSAQDKLLHILA--LLKLEVVQKKILIFINTIDMGFRLKLFLEKFGIKSAI 330
Query: 530 IHAGKPSAERLRNLQKFKETDNGILICTEVLS---------------------------- 561
++ P RL L++F LI T+ S
Sbjct: 331 LNGELPQNSRLHILEQFNAGLFDYLIATDDNSQTKKQKEEAKGEANKENKKNNKRSKPKL 390
Query: 562 -------RGLNVPEVSLVIIYNAAKTIAQYVHXXXXXXXXXXXXXALSFVMVDEL 609
RG++ +V VI ++ +++ Y+H ++S + DE+
Sbjct: 391 DAEFGVVRGIDFKKVHTVINFDMPQSVTGYIHRIGRTGRAYSSGSSVSLISPDEM 445
>SPBC24C6.02 [A] KOG0345 ATP-dependent RNA helicase
Length = 606
Score = 103 bits (256), Expect = 1e-21
Identities = 88/325 (27%), Positives = 150/325 (46%), Gaps = 30/325 (9%)
Query: 266 FVTLTPIQCQAIPAIMSGRDVIGISKTGSGKTVAFLLPLVRQIKAQPPLAPDETGPIGLI 325
F +TP+Q AIP + +D++ + TGSGKT+A+LLP ++ + DETG LI
Sbjct: 21 FKKMTPVQANAIPLFLKNKDLVVEAVTGSGKTLAYLLPCFDKVTRRD---TDETGLGALI 77
Query: 326 LTPTRELAVQI----------QEEALKFCKXXXXXXXXXXXXXELKQQINELKRGVDIIV 375
+ PTRELA QI Q ++L K + ++ +++
Sbjct: 78 VAPTRELATQIFNVTKELLAYQPDSLDGGKKLVADMYIGGKGTLTNDLASFREKNPSVVI 137
Query: 376 ATPGRFIDLMT-LNSGHLLSPTRISFVVMDEADRLFDLGFGPQVNQIMGCIRPDKQCVLF 434
TPGR ++++ ++S HL +++DEAD L D+GF + I+ + ++ LF
Sbjct: 138 GTPGRLNEMLSHISSKHL------EILILDEADTLIDMGFQRTLQSIISQLPKQRRTGLF 191
Query: 435 SATFPSKLKHFAS-RTLKNPIQ--ITINSKSLINENIQQRVQIFDEEHVKFEFLLKRLSD 491
SAT + F L+N ++ +T+ SK I+ + I + + + K
Sbjct: 192 SATMNDTVSSFLKIAGLRNSVRVSVTVTSKK-IDTRTPSSLAI---QSLVIPPIYKVQCM 247
Query: 492 RLALHRGEDEKTIIFVGSQQXXXXXXXXXXXNGI--TTFPIHAGKPSAERLRNLQKFKET 549
L E EK I+F S + +H + + R RN +KFK++
Sbjct: 248 IHLLCTIEYEKAIVFFSSCASVEYFNSLFLTYKLPFEIVALHGQQVQSNRSRNFEKFKKS 307
Query: 550 D-NGILICTEVLSRGLNVPEVSLVI 573
+ +L T++ SRGL++P V V+
Sbjct: 308 NKKTVLFTTDIASRGLDIPNVDFVL 332
>SPCC1494.06c [A] KOG0346 RNA helicase
Length = 595
Score = 102 bits (254), Expect = 2e-21
Identities = 76/300 (25%), Positives = 140/300 (46%), Gaps = 14/300 (4%)
Query: 262 NELQFVTLTPIQCQAIPAIMSGRDVIGISKTGSGKTVAFLLPLVRQIKAQPPLAPDETGP 321
++ +F T +Q + IP + G+D++ ++TGSGKT A+L+P++ + Q + ++ G
Sbjct: 30 HKCEFEKPTSVQSETIPLALEGKDLVAQARTGSGKTAAYLIPILELLLKQKQIDENQRGI 89
Query: 322 IGLILTPTRELAVQIQ---EEALKFCKXXXXXXXXXXXXXELKQQINELKRGVDIIVATP 378
L+L PTRELA Q+ E+ FC + Q+ L DI++ATP
Sbjct: 90 FALLLVPTRELAQQVYNVLEKLTAFCSKHIRFINVATNSSDTVQRPLLLDL-PDIVIATP 148
Query: 379 GRFIDLMTLNSGHLLSPTRISFVVMDEADRLFDLGFGPQVNQIMGCIRPDKQCVLFSATF 438
R + + + SG +L ++ F+V+DEAD + G+ + + + Q L SAT
Sbjct: 149 SRCV--VHVASG-VLPLDKLKFLVIDEADLMLSFGYNEDMKTLSRSLPRGTQSFLMSATL 205
Query: 439 PSKLKHFASRTLKNPIQITINSKSLINENIQQRVQIFDEEHVKFEFLLKRLSDRLALHRG 498
+ +NP + + K + Q V+ +++ +FLL + +L L +G
Sbjct: 206 SKNIASLQKLVCRNPFILAVKDKEASGKLTQYVVKCSEQD----KFLLAYILLKLRLIKG 261
Query: 499 EDEKTIIFVGSQQXXXXXXXXXXXNGITTFPIHAGKPSAERLRNLQKFKETDNGILICTE 558
K +IFV G+ + +++ P RL L+++ + I+I T+
Sbjct: 262 ---KILIFVNEINRCYRLKLFLEQFGLKSLVLNSELPVNSRLHILEQYNKGLYQIIIATD 318
>YLR276c [A] KOG0346 RNA helicase
Length = 594
Score = 100 bits (250), Expect = 7e-21
Identities = 89/323 (27%), Positives = 151/323 (46%), Gaps = 17/323 (5%)
Query: 245 TKWSQLGLSSEIMDLISNELQFVTLTPIQCQAIP-AIMSGRDVIGISKTGSGKTVAFLLP 303
T + L S ++ I N + F T IQ AIP A+ RD+I + TGSGKT+A+L+P
Sbjct: 17 TTFEAFHLDSRLLQAIKN-IGFQYPTLIQSHAIPLALQQKRDIIAKAATGSGKTLAYLIP 75
Query: 304 LVRQIKAQPPLAP--DETGPIGLILTPTRELAVQIQEEALKFCKXXXXXXXXXXXXXELK 361
++ I +E G +G+IL PTRELA Q+ K ++
Sbjct: 76 VIETILEYKKTIDNGEENGTLGIILVPTRELAQQVYNVLEKLVLYCSKDIRTLNISSDMS 135
Query: 362 QQI--NELKRGVDIIVATPGRFIDLM--TLNSGHLLSPTRISFVVMDEADRLFDLGFGPQ 417
+ L +IIV TPG+ +DL+ +NS +S + F+V+DE D + G+
Sbjct: 136 DSVLSTLLMDQPEIIVGTPGKLLDLLQTKINS---ISLNELKFLVVDEVDLVLTFGYQDD 192
Query: 418 VNQIMGC--IRPDKQCVLFSATFPSKLKHFASRTLKNPIQITINSKSLINENIQQRVQIF 475
+N+I ++ + Q L SAT ++ + ++P + N + IN+N + +Q +
Sbjct: 193 LNKIGEYLPLKKNLQTFLMSATLNDDIQALKQKFCRSPAILKFNDEE-INKNQNKLLQYY 251
Query: 476 DEEHVKFEFLLKRLSDRLALHRGEDEKTIIFVGSQQXXXXXXXXXXXNGITTFPIHAGKP 535
+ +FLL + +L L +G KT+IFV + GI + +++ P
Sbjct: 252 VKVSEFDKFLLCYVIFKLNLIKG---KTLIFVNNIDRGYRLKLVMEQFGIKSCILNSELP 308
Query: 536 SAERLRNLQKFKETDNGILICTE 558
R + +F + +LI T+
Sbjct: 309 VNSRQHIVDQFNKNVYQLLIATD 331
>Hs21327697 [A] KOG0332 ATP-dependent RNA helicase
Length = 369
Score = 100 bits (248), Expect = 1e-20
Identities = 94/356 (26%), Positives = 160/356 (44%), Gaps = 39/356 (10%)
Query: 272 IQCQAIPAIMSG--RDVIGISKTGSGKTVAFLLPLVRQIKAQPPLAPDETGPIGLILTPT 329
IQ A+P +++ +++I S++G+GKT AF+L ++ ++ A E P L L PT
Sbjct: 9 IQEMALPMMLAHPPQNLIAQSQSGTGKTAAFVLAMLSRVNAL------ELFPQCLCLAPT 62
Query: 330 RELAVQ---IQEEALKFCKXXXXXXXXXXXXXELKQQINELKRGVDI----IVATPGRFI 382
ELA+Q + E+ KFC N + RG DI I+ TPG +
Sbjct: 63 YELALQTGRVVEQMGKFCVDVQVMYAIRG---------NRIPRGTDITKQIIIGTPGTVL 113
Query: 383 DLMTLNSGHLLSPTRISFVVMDEADRLFDL-GFGPQVNQIMGCIRPDKQCVLFSATFPSK 441
D L+ T+I V+DEAD + D GF +I + + Q +LFSATF
Sbjct: 114 DWCFKLK--LIDLTKIRVFVLDEADVMIDTQGFSDHSIRIQRALPSECQMLLFSATFEDS 171
Query: 442 LKHFASRTLKNPIQITINSKSLINENIQQRVQIFDEEHVKFEFLLKRLSDRLALHRGEDE 501
+ HFA R + +P I + + L NI+Q + + K++ L ++ G+
Sbjct: 172 VWHFAERIIPDPNVIKLRKEELTLNNIRQYYVLCEHRKDKYQALCNIYG---SITIGQ-- 226
Query: 502 KTIIFVGSQQXXXXXXXXXXXNGITTFPIHAGKPSAERLRNLQKFKETDNGILICTEVLS 561
IIF +++ +G + +R +Q+F++ +LI T V +
Sbjct: 227 -AIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRDGKEKVLITTNVCA 285
Query: 562 RGLNVPEVSLVIIYNAAKTIAQ------YVHXXXXXXXXXXXXXALSFVMVDELAS 611
RG++V +V++V+ ++ + Y+H A + + VDEL S
Sbjct: 286 RGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKKGLAFNMIEVDELPS 341
>ECU02g1520 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 involved in
rRNA maturation DEAD-box superfamily
Length = 425
Score = 100 bits (248), Expect = 1e-20
Identities = 103/403 (25%), Positives = 184/403 (45%), Gaps = 40/403 (9%)
Query: 247 WSQLGLSSEIMDLISNELQFVTLTPIQCQAIPAIMSGRDVIGISKTGSGKTVAFLLPLVR 306
+S +GLS E++ I N+ F + IQ AIP I+ G +V+ SK+G+GKT+A+ ++
Sbjct: 53 FSDMGLSDELLKAIYNQ-GFEKPSLIQKSAIPHILRGHNVVVQSKSGTGKTIAYTCGVLG 111
Query: 307 QIKAQPPLAPDETGPIGLILTPTRELAVQIQEEALKFCKXXXXXXXXXXXXXELKQQINE 366
K E + +++TPTREL+ Q+ E LK +I +
Sbjct: 112 NTKI------GERTQV-MVVTPTRELSTQVTEVI-----SGLAGPLGIKVFSALKNKITD 159
Query: 367 LKRGVDIIVATPGRFIDLMTLNSGHLLSPTRISFVVMDEADRLFDLGF-GPQVNQIMGCI 425
G +++V +PG + LM L L+ + +V+DEAD L D G Q +I+ I
Sbjct: 160 -SIGEEVVVGSPGTILKLMELGK---LNYKGVKMIVLDEADILLDKDMMGTQTFRILKLI 215
Query: 426 RPDKQCVLFSATFPSKLKHFASRTLKNPIQITINSKSLINENIQQRVQIF--DEEHVKFE 483
Q + FSATF ++K + +++ +E +++F + E
Sbjct: 216 S-GAQMIFFSATFSEQVKQTIEFYAPDAVKMYEERNGKPDE-----IKLFYIEAEGENKR 269
Query: 484 FLLKRLSDRLALHRGEDEKTIIFVGSQQXXXXXXXXXXXNGITTFPIHAGKPSAERLRNL 543
LK L + L++ + IIFV ++ + + +H ER + +
Sbjct: 270 RALKSLYEYLSI-----SQMIIFVSTKATVNYLRKKLEDDLHSVSCLHGDLEIEEREKAV 324
Query: 544 QKFKETDNGILICTEVLSRGLNVPEVSLVI-----IYNAAKTIAQYVHXXXXXXXXXXXX 598
F+ + + IL+ T+V SRG+++P+V+L++ IY + Y+H
Sbjct: 325 GDFRSSKSKILLTTDVFSRGMDIPQVNLIVNYDLPIYRGVASTQTYIHRIGRSGRFGRTG 384
Query: 599 XALSFVMVDELASAYILVKCMKENELSSVPMVVYQKLKEMNDE 641
+ FV +EL AY+ KE + +S + + L+E+ +E
Sbjct: 385 FVVDFVRDEEL-EAYL--SFQKELKFASKKFTI-RALEEVAEE 423
>HsM7019399 [A] KOG0332 ATP-dependent RNA helicase
Length = 369
Score = 99.0 bits (245), Expect = 3e-20
Identities = 94/356 (26%), Positives = 159/356 (44%), Gaps = 39/356 (10%)
Query: 272 IQCQAIPAIMSG--RDVIGISKTGSGKTVAFLLPLVRQIKAQPPLAPDETGPIGLILTPT 329
IQ A+P +++ +++I S++G+GKT AF+L ++ ++ A E P L L PT
Sbjct: 9 IQEMALPMMLAHPPQNLIAQSQSGTGKTAAFVLAMLSRVNAL------ELFPQCLCLAPT 62
Query: 330 RELAVQ---IQEEALKFCKXXXXXXXXXXXXXELKQQINELKRGVDI----IVATPGRFI 382
ELA+Q + E+ KFC N + RG DI I+ TPG +
Sbjct: 63 YELALQTGRVVEQMGKFCVDVQVMYAIRG---------NRIPRGTDITKQIIIGTPGTVL 113
Query: 383 DLMTLNSGHLLSPTRISFVVMDEADRLFDL-GFGPQVNQIMGCIRPDKQCVLFSATFPSK 441
D L+ T+I V+DEAD + D GF +I + + Q +LFSATF
Sbjct: 114 DWCFKLK--LIDLTKIRVFVLDEADVMIDTQGFSDHSIRIQRALPSECQMLLFSATFEDS 171
Query: 442 LKHFASRTLKNPIQITINSKSLINENIQQRVQIFDEEHVKFEFLLKRLSDRLALHRGEDE 501
+ HFA R + +P I + + L NI+Q + + K++ L ++ G+
Sbjct: 172 VWHFAERIIPDPNVIKLRKEELTLNNIRQYYVLCEHRKDKYQALCNIYG---SITIGQ-- 226
Query: 502 KTIIFVGSQQXXXXXXXXXXXNGITTFPIHAGKPSAERLRNLQKFKETDNGILICTEVLS 561
IIF +++ +G + +R Q+F++ +LI T V +
Sbjct: 227 -AIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASITQRFRDGKEKVLITTNVCA 285
Query: 562 RGLNVPEVSLVIIYNAAKTIAQ------YVHXXXXXXXXXXXXXALSFVMVDELAS 611
RG++V +V++V+ ++ + Y+H A + + VDEL S
Sbjct: 286 RGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKKGLAFNMIEVDELPS 341
>CE26264 [A] KOG0335 ATP-dependent RNA helicase
Length = 328
Score = 97.1 bits (240), Expect = 1e-19
Identities = 77/268 (28%), Positives = 124/268 (45%), Gaps = 24/268 (8%)
Query: 400 FVVMDEADRLFDLGFGPQVNQIMGCIR-PDKQ---CVLFSATFPSKLKHFASRTLK-NPI 454
++V+DEADR+ D+GF PQ+ QI+ C R P K+ +FSATFP +++ A LK N +
Sbjct: 13 YLVLDEADRMLDMGFEPQIRQIVECNRMPSKEERITAMFSATFPKEIQLLAQDFLKENYV 72
Query: 455 QITINSKSLINENIQQRVQIFDEEHVKFEFLLKRLSDRLALHRGEDEKTIIFVGSQQXXX 514
+ + +ENI Q++ ++ EE K +L+ L G+ T++FV +++
Sbjct: 73 FLAVGRVGSTSENIMQKI-VWVEEDEKRSYLMDLLDAT-----GDSSLTLVFVETKRGAS 126
Query: 515 XXXXXXXXNGITTFPIHAGKPSAERLRNLQKFKETDNGILICTEVLSRGLNVPEVSLVII 574
IH ER ++L F+ IL+ T V +RGL++P V VI
Sbjct: 127 DLAYYLNRQNYEVVTIHGDLKQFEREKHLDLFRTGTAPILVATAVAARGLDIPNVKHVIN 186
Query: 575 YNAAKTIAQYVHXXXXXXXXXXXXXALSFVMVDELASAYILVKCMKENELSSVPMVVYQK 634
Y+ + +YVH A SF A EL + + Q+
Sbjct: 187 YDLPSDVDEYVHRIGRTGRVGNVGLATSFFNDKNRNIA---------RELMDLIVEANQE 237
Query: 635 LKEMNDEFSSGLKT-GKYRLIQGFGGKG 661
L + + S +++ G YR G GG+G
Sbjct: 238 LPDWLEGMSGDMRSGGGYR---GRGGRG 262
>At1g12770_1 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 543
Score = 97.1 bits (240), Expect = 1e-19
Identities = 94/389 (24%), Positives = 153/389 (39%), Gaps = 56/389 (14%)
Query: 247 WSQLGLSSEIMDLISNELQFVTLTPIQCQAIPAIMSGRDVIGISKTGSGKTVAFLLPLVR 306
+ +LGL ++D + E F T +Q A+PAI+ G D + S TGSGKT+A+LLP++
Sbjct: 112 FEELGLPDSLLDSLERE-GFSVPTDVQSAAVPAIIKGHDAVIQSYTGSGKTLAYLLPILS 170
Query: 307 QIKAQPPLA----------PDETGPIGLILTPTRELAVQIQEEALKFC--KXXXXXXXXX 354
+I PLA T +I+ P+REL +QI E K
Sbjct: 171 EI---GPLAEKSRSSHSENDKRTEIQAMIVAPSRELGMQIVREVEKLLGPVHRRMVQQLV 227
Query: 355 XXXXELKQQINELKRGVDIIVATPGRFIDLMTLNSGHLLSPTRISFVVMDEADRLFDLGF 414
++Q+ K I+V TPGR + ++ G L F+V+DE D L F
Sbjct: 228 GGANRMRQEEALKKNKPAIVVGTPGRIAE---ISKGGKLHTHGCRFLVLDEVDELLSFNF 284
Query: 415 GPQVNQIMGCI--------------RPDKQCVLFSATFPSKLKHFASRTLKNPIQITIN- 459
+++I+ + R ++Q +L SAT P + A P+ + N
Sbjct: 285 REDIHRILEHVGKRSGAGPKGEVDERANRQTILVSATVPFSVIRAAKSWSHEPVLVQANK 344
Query: 460 ------------------SKSLINENIQQRVQIFDEEHVKFEFLLKRLSD----RLALHR 497
+ S + IQ +Q + + K R +H
Sbjct: 345 VTPLDTVQPSAPVMSLTPTTSEADGQIQTTIQSLPPALKHYYCISKHQHKVDTLRRCVHA 404
Query: 498 GEDEKTIIFVGSQQXXXXXXXXXXXNGITTFPIHAGKPSAERLRNLQKFKETDNGILICT 557
+ + I F+ + G+ + +H R L+KFK + +L+
Sbjct: 405 LDAQSVIAFMNHSRQLKDVVYKLEARGMNSAEMHGDLGKLGRSTVLKKFKNGEIKVLVTN 464
Query: 558 EVLSRGLNVPEVSLVIIYNAAKTIAQYVH 586
E+ +RGL+V E LV+ Y H
Sbjct: 465 ELSARGLDVAECDLVVNLELPTDAVHYAH 493
>YKR024c [A] KOG0348 ATP-dependent RNA helicase
Length = 742
Score = 96.3 bits (238), Expect = 2e-19
Identities = 105/445 (23%), Positives = 184/445 (40%), Gaps = 69/445 (15%)
Query: 231 DNIKISGKDCPKPVTKWSQLGLSSEIMDLISNELQFVTLTPIQCQAIPAIMSG---RDVI 287
+N+ I+ + P +++ LG+SS ++ + +++ T IQ QAIP I+ D
Sbjct: 129 ENVAINPSNAPLKGDQFASLGVSSLLVSHLEQKMRIKKPTSIQKQAIPQIIGNAGKNDFF 188
Query: 288 GISKTGSGKTVAFLLPLVRQIKAQPPLAPDETGPIGLILTPTRELAVQIQEEALKFCKXX 347
++TGSGKT+++LLP++ I +G L++ PTRELA QI
Sbjct: 189 IHAQTGSGKTLSYLLPIISTILNMDTHVDRTSGAFALVIAPTRELASQIYHVCSTLVSCC 248
Query: 348 XXXXXXXXXXXELKQ-QINELKRGVDIIVATPGRFIDLM--TLNSGHLLSPTRISFVVMD 404
E K+ + L++G + I+ TPGR +D + T LS + + ++V+D
Sbjct: 249 HYLVPCLLIGGERKKSEKARLRKGCNFIIGTPGRVLDHLQNTKVIKEQLSQS-LRYIVLD 307
Query: 405 EADRLFDLGFGPQVNQIMGCIR------------PDKQC-VLFSATFPSKLKHFASRTLK 451
E D+L +LGF +++I+ + P K +L SAT + + LK
Sbjct: 308 EGDKLMELGFDETISEIIKIVHDIPINSEKFPKLPHKLVHMLCSATLTDGVNRLRNVALK 367
Query: 452 NPIQITINSK------SLINENIQQRVQIFDEEHVKFEFLLKRLSD--RLALHRGEDEK- 502
+ I+ +K ++ + + QR+ I + ++ L L++ + + G+ K
Sbjct: 368 DYKLISNGTKKDSDIVTVAPDQLLQRITIVPPK-LRLVTLAATLNNITKDFIASGQQSKT 426
Query: 503 --TIIFV-----------------GSQQXXXXXXXXXXXNGITTFP-------------- 529
TI+FV G + G T FP
Sbjct: 427 LRTIVFVSCSDSVEFHYDAFSGSDGHHKNLTGDSVRLLTKGNTMFPCFSDSRDPDVVIYK 486
Query: 530 IHAGKPSAERLRNLQKFKETDNG------ILICTEVLSRGLNVPEVSLVIIYNAAKTIAQ 583
+H R LQ F + I+ CT+V SRGL++P V VI + +
Sbjct: 487 LHGSLSQQMRTSTLQHFARDNEATKGKHLIMFCTDVASRGLDLPHVGSVIELDPPFAVED 546
Query: 584 YVHXXXXXXXXXXXXXALSFVMVDE 608
++H +L F++ E
Sbjct: 547 HLHRVGRTARAGEKGESLLFLLPGE 571
>Hs14251212 [K] KOG4284 DEAD box protein
Length = 824
Score = 95.9 bits (237), Expect = 2e-19
Identities = 89/322 (27%), Positives = 140/322 (42%), Gaps = 17/322 (5%)
Query: 270 TPIQCQAIPAIMSGRDVIGISKTGSGKTVAFLLPLVRQIKAQPPLAPDETGPIGLILTPT 329
+P+Q +AIP G D+I +K+G+GKT F A L + LIL PT
Sbjct: 86 SPVQLKAIPLGRCGLDLIVQAKSGTGKTCVF------STIALDSLVLENLSTQILILAPT 139
Query: 330 RELAVQIQEEALKF-CKXXXXXXXXXXXXXELKQQINELKRGVDIIVATPGRFIDLMTLN 388
RE+AVQI K L Q LK+ I V +PGR L+ L+
Sbjct: 140 REIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRLKK-CHIAVGSPGRIKQLIELD 198
Query: 389 SGHLLSPTRISFVVMDEADRLFDLG-FGPQVNQIMGCIRPDKQCVLFSATFPSKLKHFAS 447
L+P I ++DEAD+L + G F Q+N I + KQ + SAT+P L + +
Sbjct: 199 ---YLNPGSIRLFILDEADKLLEEGSFQEQINWIYSSLPASKQMLAVSATYPEFLANALT 255
Query: 448 RTLKNPIQITINSK--SLIN-ENIQQRVQIFDEEHVKFEFLLKRLSDRLALHRGEDEKTI 504
+ +++P + +NS SLI + + V + H FE + L + + R + +
Sbjct: 256 KYMRDPTFVRLNSSDPSLIGLKQYYKVVNSYPLAHKVFEEKTQHLQELFS--RIPFNQAL 313
Query: 505 IFVGSQQXXXXXXXXXXXNGITTFPIHAGKPSAERLRNLQKFKETDNGILICTEVLSRGL 564
+F G I +RL + K K +LI T++ SRG+
Sbjct: 314 VFSNLHSRAQHLADILSSKGFPAECISGNMNQNQRLDAMAKLKHFHCRVLISTDLTSRGI 373
Query: 565 NVPEVSLVIIYNAAKTIAQYVH 586
+ +V+LV+ + Y+H
Sbjct: 374 DAEKVNLVVNLDVPLDWETYMH 395
>CE29051 [A] KOG0335 ATP-dependent RNA helicase
Length = 1016
Score = 92.8 bits (229), Expect = 2e-18
Identities = 83/294 (28%), Positives = 137/294 (46%), Gaps = 20/294 (6%)
Query: 270 TPIQCQAIPAIMSGRDVIGISKTGSGKTVAFLLP----LVRQIKAQPPLAPDETGPIGLI 325
TPIQ + IM G DV+ + TGSGKT+AFL+P L+ + + + ++ P LI
Sbjct: 723 TPIQRASFFPIMHGDDVVACAHTGSGKTLAFLIPFVIKLMEEFEKDRDVTDEKPSPRLLI 782
Query: 326 LTPTRELAVQIQEEALKFCKXXXXXXXXXXXXXELKQQINELK--RGVDIIVATPGRFID 383
+ PTREL Q A + + L+ ++I+VAT GR D
Sbjct: 783 VAPTRELVNQTFTTARQLTYETGLKCGLAFGGYSRNANVQHLRSFSQLNILVATMGRLQD 842
Query: 384 LMTLNSGHLLSPTRISFVVMDEADRLFD-LGFGPQVNQIMGCI-RPDKQCVLFSATFPSK 441
+N+G +S +++ ++V+DEADR+ D + FG +V++I+G +Q VLFSA+F
Sbjct: 843 F--VNAGE-VSLSKMKYIVLDEADRMVDSIDFGEEVSKIIGSPGERTQQTVLFSASFSED 899
Query: 442 LK--HFASRTLKNPIQITINSKSLINENIQQRVQIFDEEHVKFEFLLKRLS------DRL 493
L+ + + ++ NE I Q++ K + + K L L
Sbjct: 900 LQSDDLPKFVKEGYTMLQVDKFGTANEKIDQKILPVPRTE-KRDAIYKLLGIDENTVTLL 958
Query: 494 ALHRGEDEKTIIFVGSQQXXXXXXXXXXXNGITTFPIHAGKPSAERLRNLQKFK 547
E +KT+IFV S + G++T +H+ + +R R L F+
Sbjct: 959 PDAPIEKQKTLIFVNSVKFCDTLAALISSAGVSTISMHSYQNQEQRDRTLDDFR 1012
>Hs17474878 [A] KOG0333 U5 snRNP-like RNA helicase subunit
Length = 645
Score = 90.5 bits (223), Expect = 9e-18
Identities = 67/262 (25%), Positives = 116/262 (43%), Gaps = 23/262 (8%)
Query: 367 LKRGVDIIVATPGRFIDLMTLNSGHLLSPTRISFVVMDEADRLFDLGFGPQVNQIMGCIR 426
L G +I++ATPG ID++ L + ++VV+DEADR+ D+GF P V +I+ +
Sbjct: 379 LLMGCEIVIATPGHLIDVL---ENRYLVLSCCTYVVLDEADRMIDVGFEPDVQKILEHMP 435
Query: 427 PDKQCVLFSATFPSKLKHFASRTLKNPIQITINSKSLINENIQQRVQIFDEEHVKFEFLL 486
S+ +H S + + + K +E ++Q + + E
Sbjct: 436 Q------------SEARHDESEDPEKMLANFESGKRKPHERVEQVFLMSESE-------- 475
Query: 487 KRLSDRLALHRGEDEKTIIFVGSQQXXXXXXXXXXXNGITTFPIHAGKPSAERLRNLQKF 546
KR L +G D IFV ++ G +H GK +R L
Sbjct: 476 KRKKLLEILKQGFDPAITIFVNQKKGCDVLAKSLEKMGYNACTLHGGKGQEQREFALSNL 535
Query: 547 KETDNGILICTEVLSRGLNVPEVSLVIIYNAAKTIAQYVHXXXXXXXXXXXXXALSFVMV 606
K +L+ T+V G+++ +VS+V+ Y+ AK I Y+H A++F+
Sbjct: 536 KPGAKDVLVTTDVAGHGIDIQDVSMVVNYDMAKNIDDYIHRIGRMGQAGKSGVAITFLTK 595
Query: 607 DELASAYILVKCMKENELSSVP 628
++ A Y L + + E+ +SS P
Sbjct: 596 EDSAVFYELKQAILESPVSSCP 617
>At3g06980 [A] KOG0331 ATP-dependent RNA helicase
Length = 781
Score = 90.5 bits (223), Expect = 9e-18
Identities = 84/358 (23%), Positives = 158/358 (43%), Gaps = 23/358 (6%)
Query: 247 WSQLGLSSEIMDLISNELQFVTLTPIQCQAIPAIMSGRDVIGISKTGSGKTVAFLLPLVR 306
++++G S ++M + E F IQ A ++ G+ I ++GSGKT+A+L+P+++
Sbjct: 376 FAEIGCSEDMMKALK-EQNFDRPAHIQAMAFSPVIDGKSCIIADQSGSGKTLAYLVPVIQ 434
Query: 307 QIKAQPPLAPDETG---PIGLILTPTRELAVQIQEEALKFCKXXX-XXXXXXXXXXELKQ 362
+++ + ++ P ++L PT ELA Q+ K +
Sbjct: 435 RLREEELQGHSKSSPGCPRVIVLVPTAELASQVLANCRSISKSGVPFRSMVVTGGFRQRT 494
Query: 363 QINELKRGVDIIVATPGRFIDLMTLNSGHLLSPTRISFVVMDEADRLF-DLGFGPQVNQI 421
Q+ L++GVD+++ATPGRF LM N G +L + + ++DE D LF D F + +
Sbjct: 495 QLENLEQGVDVLIATPGRFTYLM--NEG-ILGLSNLRCAILDEVDILFGDDEFEAALQNL 551
Query: 422 MGCIRPDKQCVLFSATFPSKLKH-----FASRTLKNPIQITINSKSLINENIQQRVQIFD 476
+ Q + +AT P ++ + F + ++ S +L +
Sbjct: 552 INSSPVTAQYLFVTATLPLEIYNKLVEVFPDCEVVMGPRVHRVSNALEEFLVDCSGDDNA 611
Query: 477 EEHVKFEFLLKRLSDRLALHRGEDEKTIIFVGSQQX-----XXXXXXXXXXNGITTFPIH 531
E+ + F K+ + + KTIIF + + P H
Sbjct: 612 EKTPETAFQNKKTALLQIMEENPVSKTIIFCNKIETCRKVENIFKRVDRKERQLHVLPFH 671
Query: 532 AGKPSAERLRNLQKF----KETDNGILICTEVLSRGLNVPEVSLVIIYNAAKTIAQYV 585
A RL N+Q+F E ++ L+CT+ SRG++ V V++++ + ++YV
Sbjct: 672 AALSQESRLTNMQEFTSSQPEENSLFLVCTDRASRGIDFSGVDHVVLFDFPRDPSEYV 729
>CE18221 [A] KOG0332 ATP-dependent RNA helicase
Length = 613
Score = 88.2 bits (217), Expect = 5e-17
Identities = 93/375 (24%), Positives = 164/375 (42%), Gaps = 25/375 (6%)
Query: 212 PNDLGLMSEKDVEELRLSLDNIKISGKDCPKP----VTKWSQLGLSSEIMDLISNELQFV 267
P D+ L+++ +E+++ D + + PK ++ + +L L E++ + + F
Sbjct: 172 PADIALLNKFIQKEVKMMKDVVVDVQRQDPKSPLYSISSFRELRLKPEVLKALDT-MNFQ 230
Query: 268 TLTPIQCQAIPAIMSG--RDVIGISKTGSGKTVAFLLPLVRQIKAQPPLAPDETGPIGLI 325
T IQ A+P ++ ++I +++G+GKT AF+L ++ +I P +
Sbjct: 231 FPTRIQETALPLLLMEPPSNLIAQAQSGTGKTAAFVLTMLCRIDVNLMC------PQCIC 284
Query: 326 LTPTRELAVQIQEEALKFCKXXXXXXXXXXXXXELKQQINELKRGVDIIVATPGRFIDLM 385
L PT ELA QI E K K + K I++ TPG D
Sbjct: 285 LAPTLELAKQIGEVVEKMGKFIDNLKIHYAIKGGNMAAMRGRKLTEQIVIGTPGITRDY- 343
Query: 386 TLNSGHLLSPTRISFVVMDEAD-RLFDLGFGPQVNQIMGCIRPDK---QCVLFSATFPSK 441
L + P++I +V+DEAD ++ GF I + Q +LFSAT+
Sbjct: 344 -LQKYKCIDPSKIRCLVLDEADVMIYHQGFTDISTTIYNMVEDASDSVQSMLFSATYDEP 402
Query: 442 LKHFASRTLKNPIQITINSKSLINENIQQRVQIFDEEHVKFEFLLKRLSDRLALHRGEDE 501
+ +FA++ +KN I + + + NI+Q K+ ++ S LA+
Sbjct: 403 VINFATKIIKNAIVVMLKREEQALPNIKQFYVQCACRDSKYAAIVNLYSG-LAV-----A 456
Query: 502 KTIIFVGSQQXXXXXXXXXXXNGITTFPIHAGKPSAERLRNLQKFKETDNGILICTEVLS 561
++IF ++ G +H ER + FK D +LI T V +
Sbjct: 457 SSVIFCHTKASVMWLYENMRARGHQVDVLHGDMTVVERADTIIHFKRGDFKVLITTNVFA 516
Query: 562 RGLNVPEVSLVIIYN 576
RG++V +VS+VI Y+
Sbjct: 517 RGIDVAQVSVVINYD 531
>CE18220 [A] KOG0332 ATP-dependent RNA helicase
Length = 638
Score = 88.2 bits (217), Expect = 5e-17
Identities = 93/375 (24%), Positives = 164/375 (42%), Gaps = 25/375 (6%)
Query: 212 PNDLGLMSEKDVEELRLSLDNIKISGKDCPKP----VTKWSQLGLSSEIMDLISNELQFV 267
P D+ L+++ +E+++ D + + PK ++ + +L L E++ + + F
Sbjct: 197 PADIALLNKFIQKEVKMMKDVVVDVQRQDPKSPLYSISSFRELRLKPEVLKALDT-MNFQ 255
Query: 268 TLTPIQCQAIPAIMSG--RDVIGISKTGSGKTVAFLLPLVRQIKAQPPLAPDETGPIGLI 325
T IQ A+P ++ ++I +++G+GKT AF+L ++ +I P +
Sbjct: 256 FPTRIQETALPLLLMEPPSNLIAQAQSGTGKTAAFVLTMLCRIDVNLMC------PQCIC 309
Query: 326 LTPTRELAVQIQEEALKFCKXXXXXXXXXXXXXELKQQINELKRGVDIIVATPGRFIDLM 385
L PT ELA QI E K K + K I++ TPG D
Sbjct: 310 LAPTLELAKQIGEVVEKMGKFIDNLKIHYAIKGGNMAAMRGRKLTEQIVIGTPGITRDY- 368
Query: 386 TLNSGHLLSPTRISFVVMDEAD-RLFDLGFGPQVNQIMGCIRPDK---QCVLFSATFPSK 441
L + P++I +V+DEAD ++ GF I + Q +LFSAT+
Sbjct: 369 -LQKYKCIDPSKIRCLVLDEADVMIYHQGFTDISTTIYNMVEDASDSVQSMLFSATYDEP 427
Query: 442 LKHFASRTLKNPIQITINSKSLINENIQQRVQIFDEEHVKFEFLLKRLSDRLALHRGEDE 501
+ +FA++ +KN I + + + NI+Q K+ ++ S LA+
Sbjct: 428 VINFATKIIKNAIVVMLKREEQALPNIKQFYVQCACRDSKYAAIVNLYSG-LAV-----A 481
Query: 502 KTIIFVGSQQXXXXXXXXXXXNGITTFPIHAGKPSAERLRNLQKFKETDNGILICTEVLS 561
++IF ++ G +H ER + FK D +LI T V +
Sbjct: 482 SSVIFCHTKASVMWLYENMRARGHQVDVLHGDMTVVERADTIIHFKRGDFKVLITTNVFA 541
Query: 562 RGLNVPEVSLVIIYN 576
RG++V +VS+VI Y+
Sbjct: 542 RGIDVAQVSVVINYD 556
>CE18219 [A] KOG0332 ATP-dependent RNA helicase
Length = 1022
Score = 88.2 bits (217), Expect = 5e-17
Identities = 93/375 (24%), Positives = 164/375 (42%), Gaps = 25/375 (6%)
Query: 212 PNDLGLMSEKDVEELRLSLDNIKISGKDCPKP----VTKWSQLGLSSEIMDLISNELQFV 267
P D+ L+++ +E+++ D + + PK ++ + +L L E++ + + F
Sbjct: 581 PADIALLNKFIQKEVKMMKDVVVDVQRQDPKSPLYSISSFRELRLKPEVLKALDT-MNFQ 639
Query: 268 TLTPIQCQAIPAIMSG--RDVIGISKTGSGKTVAFLLPLVRQIKAQPPLAPDETGPIGLI 325
T IQ A+P ++ ++I +++G+GKT AF+L ++ +I P +
Sbjct: 640 FPTRIQETALPLLLMEPPSNLIAQAQSGTGKTAAFVLTMLCRIDVNLMC------PQCIC 693
Query: 326 LTPTRELAVQIQEEALKFCKXXXXXXXXXXXXXELKQQINELKRGVDIIVATPGRFIDLM 385
L PT ELA QI E K K + K I++ TPG D
Sbjct: 694 LAPTLELAKQIGEVVEKMGKFIDNLKIHYAIKGGNMAAMRGRKLTEQIVIGTPGITRDY- 752
Query: 386 TLNSGHLLSPTRISFVVMDEAD-RLFDLGFGPQVNQIMGCIRPDK---QCVLFSATFPSK 441
L + P++I +V+DEAD ++ GF I + Q +LFSAT+
Sbjct: 753 -LQKYKCIDPSKIRCLVLDEADVMIYHQGFTDISTTIYNMVEDASDSVQSMLFSATYDEP 811
Query: 442 LKHFASRTLKNPIQITINSKSLINENIQQRVQIFDEEHVKFEFLLKRLSDRLALHRGEDE 501
+ +FA++ +KN I + + + NI+Q K+ ++ S LA+
Sbjct: 812 VINFATKIIKNAIVVMLKREEQALPNIKQFYVQCACRDSKYAAIVNLYSG-LAV-----A 865
Query: 502 KTIIFVGSQQXXXXXXXXXXXNGITTFPIHAGKPSAERLRNLQKFKETDNGILICTEVLS 561
++IF ++ G +H ER + FK D +LI T V +
Sbjct: 866 SSVIFCHTKASVMWLYENMRARGHQVDVLHGDMTVVERADTIIHFKRGDFKVLITTNVFA 925
Query: 562 RGLNVPEVSLVIIYN 576
RG++V +VS+VI Y+
Sbjct: 926 RGIDVAQVSVVINYD 940
>ECU09g1200 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 425
Score = 87.0 bits (214), Expect = 1e-16
Identities = 92/372 (24%), Positives = 160/372 (42%), Gaps = 19/372 (5%)
Query: 247 WSQLGLSSEIMDLISNELQFVTLTPIQCQAIPAIMSGRDVIGISKTGSGKTVAFLLPLVR 306
W GL +++ I + + F T + IQ AI I+ GRD+ +++G+GKT AF + ++
Sbjct: 40 WEDYGLKEDLLKGIYS-IGFETPSFIQKAAIQPIIDGRDIRAQAQSGTGKTGAFAVAALQ 98
Query: 307 QIKAQPPLAPDETGPIGLILTPTRELAVQIQEEALKFCKXXXXXXXXXXXXXELKQQINE 366
++ D T L+L TRE+A Q +
Sbjct: 99 IC----DMSQDVTQI--LVLASTREIAAQNAARFEDLGCFMGARVALLSGGSPIAADKVA 152
Query: 367 LKRGVDIIVATPGRFIDLMTLNSGHLLSPTRISFVVMDEADRLFDLGFGPQVNQIMGCI- 425
L++ I+V TPGR ++ +N LS I V+DEAD + GF QV I I
Sbjct: 153 LEKKPHIVVGTPGRVEHMININE---LSMDNIKLFVIDEADEMLKAGFQEQVKSIFRRIT 209
Query: 426 -RPDKQCVLFSATFPSKLKHFASRTLKNPIQITINSKSLINENIQQRVQIFDEE----HV 480
+ + Q +FSAT+ + + L NP+ I + + I+Q +E
Sbjct: 210 NKDEVQIAMFSATYDEEELRVSEEILINPVIIDLRYNDQTLKGIRQYFIDLRKEPPFRKG 269
Query: 481 KFEFLLKRLSDRLALHRGED-EKTIIFVGSQQXXXXXXXXXXXNGITTFPIHAGKPSAER 539
+ ++LL +L + R + ++I+F+ S++ + I A AER
Sbjct: 270 REDYLLPKLVTLYDIFRKQRLGQSIVFINSKEDARIVYDWLIRHEWECELISAELTQAER 329
Query: 540 LRNLQKFKETDNGILICTEVLSRGLNVPEVSLVIIYN--AAKTIAQYVHXXXXXXXXXXX 597
R L +F+ LI + +LSRG+++ +S+V + + + + Y+H
Sbjct: 330 ERTLNRFRGGTGRCLISSGLLSRGIDIQNLSVVFCLDVPSFERKSTYIHRIGRSGRYGRK 389
Query: 598 XXALSFVMVDEL 609
A++ V EL
Sbjct: 390 GIAINIVYEHEL 401
>CE28485 [K] KOG4284 DEAD box protein
Length = 963
Score = 87.0 bits (214), Expect = 1e-16
Identities = 70/302 (23%), Positives = 135/302 (44%), Gaps = 17/302 (5%)
Query: 285 DVIGISKTGSGKTVAFLLPLVRQIKAQPPLAPDETGPIGLILTPTRELAVQIQEEALKFC 344
D++ +K+G+GKT+ F + V + ++ +I+TPTRE++VQI+E K
Sbjct: 51 DMLVQAKSGTGKTLVFSVLAVENLDSRSSHIQK------VIVTPTREISVQIKETVRKVA 104
Query: 345 KXXXXXXXXXXXXXELKQQINELKRGVDIIVATPGRFIDLMTLNSGHLLSPTRISFVVMD 404
I+ + I++ TPGR L+ L + ++ + + F V+D
Sbjct: 105 PTGARTSVYVGGSAHKLNLIDLKQTRPQIVIGTPGRIAQLVKLGA---MNMSHVDFFVLD 161
Query: 405 EADRLFDLGFGPQVNQIMGCIRPDKQCVLFSATFPSKLKHFASRTLKNPIQITINSKSLI 464
EAD+L D F +N I+ + +Q +FSAT+P L + S L++ + N+ +
Sbjct: 162 EADKLMDEVFRDDINIIINSLPQIRQVAVFSATYPRNLDNLLSTFLRDAALVRFNADDVQ 221
Query: 465 NENIQQRVQIFDEEHVKFEFLLKRLSDRLALHRGEDEKTIIFVGSQQXXXXXXXXXXXNG 524
I+Q V K +L++L+ L R + ++F +G
Sbjct: 222 LFGIKQYVV------AKCSPMLEKLTHVLKSIR--YVQALVFCDQISKCEPIATHLKSSG 273
Query: 525 ITTFPIHAGKPSAERLRNLQKFKETDNGILICTEVLSRGLNVPEVSLVIIYNAAKTIAQY 584
+ + + +R + + + IL+ +++ +RG++ V+LV+ +AA Y
Sbjct: 274 LDVTFVSSAMSQKDRQLAVDQLRAKRVKILVSSDLTARGIDADNVNLVVNIDAAANEETY 333
Query: 585 VH 586
H
Sbjct: 334 FH 335
>Hs4826688 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 439
Score = 86.7 bits (213), Expect = 1e-16
Identities = 78/328 (23%), Positives = 146/328 (43%), Gaps = 26/328 (7%)
Query: 263 ELQFVTLTPIQCQAIPAIMSGRDVIGISKTGSGKTVAFLLPLVRQIKAQPPLAPDETGPI 322
E QF TPIQ + G ++ G++ TG+GKT+AFLLP++ +I P + +
Sbjct: 12 EQQFKAQTPIQAAVWEKLAQGDNIFGLAPTGTGKTLAFLLPILSRI--DPKVKQTQV--- 66
Query: 323 GLILTPTRELAVQIQEEALKFCKXXXXXXXXXXXXXELKQQINELKRG-VDIIVATPGRF 381
LIL P++ELA+Q A ++ ++Q ++LK+ I+V T GR
Sbjct: 67 -LILAPSQELAMQTTAVAREWGALVDVSVTSLIGGANGRRQADKLKKDKPHIVVGTLGR- 124
Query: 382 IDLMTLNSGHLLSPTRISFVVMDEADRLFDLGFGPQVNQIMGCIRPDKQCVLFSATFPSK 441
++T+ G L + V+ DEAD + + + + D Q LFSAT
Sbjct: 125 --VLTMLDGGALKLNGLQTVIFDEADAMLSDERRDSLQALAAQLPTDVQLGLFSATSGVD 182
Query: 442 LKHFASRTLK--NPIQITINSKSLINENIQQRVQIFDEEHVKFEFLLKRLSDRLALHRGE 499
LK+ A + P+ + ++ + I Q + ++ K L++ ++
Sbjct: 183 LKYVADTFGQEVRPVSVGTDAPAAITHEFQ-----YVDQKAKASLLIQLARNK------- 230
Query: 500 DEKTIIFVGSQQXXXXXXXXXXXNGITTFPIHAG-KPSAERLRNLQKFKETDNGILICTE 558
++ ++F + + I + K +R L+ FK+ + +L+ T+
Sbjct: 231 -QQALVFFNTISGLVNMQATLRHAHASVMSIGSNDKRQVQRADALRLFKKGEVSLLLVTD 289
Query: 559 VLSRGLNVPEVSLVIIYNAAKTIAQYVH 586
V +RGL++ ++ LV+ + Y+H
Sbjct: 290 VAARGLDIEDLPLVVNAQLPQRKKTYIH 317
>CE01338 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 363
Score = 86.7 bits (213), Expect = 1e-16
Identities = 71/314 (22%), Positives = 137/314 (43%), Gaps = 24/314 (7%)
Query: 272 IQCQAIPAIMSGRDVIGISKTGSGKTVAFLLPLVRQIKAQPPLAPDETGPIGLILTPTRE 331
IQ A+ +G+DV S+ GSGKTV L+ +++ I + + ++L P R
Sbjct: 22 IQKSAVAPCTTGKDVTIQSQAGSGKTVISLIDILQGIDCE------DAHLQVILLAPQRG 75
Query: 332 LAVQIQEEALKFCKXXXXXXXXXXXXXELKQQINELKRGVDIIVATPGRFIDLMTLNSGH 391
+A + E+ + + + +++ TP F+ + ++
Sbjct: 76 MAQRAHEQLKSLGRNLNVNATCLGFDTTAEND-----KISHVLMGTPKDFLSNIPSDT-- 128
Query: 392 LLSPTRISFVVMDEADRLFDLGFGPQVNQIMGCIRPDKQCVLFSATFPSKLKHFASRTLK 451
+RI V+DEAD + GF Q+ ++ + D Q VL SAT PS++ +R ++
Sbjct: 129 ----SRIKMFVLDEADEMLSKGFKDQIYEVFRSMPQDVQVVLLSATMPSEVLDVTNRFMR 184
Query: 452 NPIQITINSKSLINENIQQRVQIFDEEHVKFEFLLKRLSDRLALHRGEDEKTIIFVGSQQ 511
+PI+I + L E I+Q ++ KF L L + + +IF +++
Sbjct: 185 DPIRILVKKDELTLEGIRQFYINVQKDEWKFNCLCD------LLKTSRETQALIFCNTRR 238
Query: 512 XXXXXXXXXXXNGITTFPIHAGKPSAERLRNLQKFKETDNGILICTEVLSRGLNVPEVSL 571
I H ER ++ F + +L+ T++++RG+N+ + SL
Sbjct: 239 RVTQLTEQLMSIPIKVSCFHGNMEHNEREDMVKDFNSRNTRVLVTTDLMARGMNIRK-SL 297
Query: 572 VIIYNAAKTIAQYV 585
+I Y+ + + Y+
Sbjct: 298 IINYDVSGNMENYM 311
>Hs8922886 [A] KOG0332 ATP-dependent RNA helicase
Length = 478
Score = 86.3 bits (212), Expect = 2e-16
Identities = 78/311 (25%), Positives = 145/311 (46%), Gaps = 25/311 (8%)
Query: 272 IQCQAIPAIMSG--RDVIGISKTGSGKTVAFLLPLVRQIKAQPPLAPDETGPIGLILTPT 329
IQ A+P +++ +++I S++G+GKT AF+L ++ +++ P + P L L+PT
Sbjct: 117 IQENALPMMLAEPPQNLIAQSQSGTGKTAAFVLAMLSRVE------PSDRYPQCLCLSPT 170
Query: 330 RELAVQ---IQEEALKFCKXXXXXXXXXXXXXELKQQINELKRGVDIIVATPGRFIDLMT 386
ELA+Q + E+ KF E Q+I+E I++ TPG +D +
Sbjct: 171 YELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKISE-----QIVIGTPGTVLDWCS 225
Query: 387 LNSGHLLSPTRISFVVMDEADRLFDL-GFGPQVNQIMGCIRPDKQCVLFSATFPSKLKHF 445
+ P +I V+DEAD + G Q +I + + Q +LFSATF + F
Sbjct: 226 KLK--FIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKF 283
Query: 446 ASRTLKNPIQITINSKSLINENIQQRVQIFDEEHVKFEFLLKRLSDRLALHRGEDEKTII 505
A + + +P I + + + I+Q + KF+ L L + + + +I
Sbjct: 284 AQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDEKFQALCN-LYGAITI-----AQAMI 337
Query: 506 FVGSQQXXXXXXXXXXXNGITTFPIHAGKPSAERLRNLQKFKETDNGILICTEVLSRGLN 565
F +++ G + +R +++F+E +L+ T V +RG++
Sbjct: 338 FCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGID 397
Query: 566 VPEVSLVIIYN 576
V +VS+VI ++
Sbjct: 398 VEQVSVVINFD 408
>Hs6005743 [A] KOG0332 ATP-dependent RNA helicase
Length = 479
Score = 86.3 bits (212), Expect = 2e-16
Identities = 79/311 (25%), Positives = 144/311 (45%), Gaps = 25/311 (8%)
Query: 272 IQCQAIPAIMSG--RDVIGISKTGSGKTVAFLLPLVRQIKAQPPLAPDETGPIGLILTPT 329
IQ A+P +++ +++I S++G+GKT AF+L ++ Q++ P P L L+PT
Sbjct: 118 IQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVE------PANKYPQCLCLSPT 171
Query: 330 RELAVQ---IQEEALKFCKXXXXXXXXXXXXXELKQQINELKRGVDIIVATPGRFIDLMT 386
ELA+Q + E+ KF E Q+I+E I++ TPG +D +
Sbjct: 172 YELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKISE-----QIVIGTPGTVLDWCS 226
Query: 387 LNSGHLLSPTRISFVVMDEADRLFDL-GFGPQVNQIMGCIRPDKQCVLFSATFPSKLKHF 445
+ P +I V+DEAD + G Q +I + + Q +LFSATF + F
Sbjct: 227 KLK--FIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKF 284
Query: 446 ASRTLKNPIQITINSKSLINENIQQRVQIFDEEHVKFEFLLKRLSDRLALHRGEDEKTII 505
A + + +P I + + + I+Q + KF+ L L + + + +I
Sbjct: 285 AQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDEKFQALCN-LYGAITI-----AQAMI 338
Query: 506 FVGSQQXXXXXXXXXXXNGITTFPIHAGKPSAERLRNLQKFKETDNGILICTEVLSRGLN 565
F +++ G + +R +++F+E +L+ T V +RG++
Sbjct: 339 FCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGID 398
Query: 566 VPEVSLVIIYN 576
V +VS+VI ++
Sbjct: 399 VEQVSVVINFD 409
>ECU05g1270 [A] KOG0331 ATP-dependent RNA helicase
Length = 426
Score = 83.6 bits (205), Expect = 1e-15
Identities = 84/320 (26%), Positives = 150/320 (46%), Gaps = 28/320 (8%)
Query: 270 TPIQCQAIPAIMSGRDVIGISKTGSGKTVAFLLPLVRQIKAQPPLAPDETGPIGLILTPT 329
T +Q IP I++G V IS+TGSGKT++++LP + +++ L++ PT
Sbjct: 80 TDVQRFVIPYILAGEGVDVISETGSGKTLSYVLPHIHLLESGDKRL--------LVIVPT 131
Query: 330 RELAVQIQEEALKFCKXXXXXXXXXXXXXELKQQINELKRGVDIIVATPGRFIDLMTLNS 389
REL Q+ + KF + ++ Q ++ R D+ ++TPGR +L+ L
Sbjct: 132 RELVSQVGQVFRKFSE-GLLRIVEITGEVSIESQRLQVSRPFDVAISTPGRLRELLELK- 189
Query: 390 GHLLSPTRISFVVMDEADRLFDLGFGPQVNQIMGCIRPDKQCVLFSATFPSKLKHFASRT 449
S +VV+DEADRL V I+ ++P+ FSAT P + +R
Sbjct: 190 ----SIGGFEYVVVDEADRLMQHDIRSDVTFILERMKPE-VASFFSAT-PFEWSG-GTRI 242
Query: 450 LKNPIQITIN-SKSLINENIQQRVQIFDEEHVKFE-FLLKRLS-DRLALHRGEDEKTIIF 506
L + + + + + ++++Q+ E V E +L K + DR L E +K I+F
Sbjct: 243 LVGNVSVGRDVEEFFMYVEKKEKMQVLGEILVSCEGWLAKNMGVDRNGL---EVKKIIVF 299
Query: 507 VGSQQXXXXXXXXXXXNGITTFPIHAGKPSAERLRNLQKFKETDNGILICTEVLSRGLNV 566
S + +H+ + ER ++ E + +LI T++ RG+++
Sbjct: 300 CNSIRTCENLHKRFR----QLLVLHSRRTMQERKAVIEAL-EGERAVLIATDLGGRGIDI 354
Query: 567 PEVSLVIIYNAAKTIAQYVH 586
+V LV+ Y+ + + YVH
Sbjct: 355 KDVDLVVNYDLPRAVDGYVH 374
>ECU06g1250 [A] KOG0337 ATP-dependent RNA helicase
Length = 465
Score = 82.4 bits (202), Expect = 3e-15
Identities = 76/317 (23%), Positives = 134/317 (41%), Gaps = 80/317 (25%)
Query: 270 TPIQCQAIPAIMSGRDVIGISKTGSGKTVAFLLPLVRQIKAQPPLAPDETGPIGLILTPT 329
TPIQ + IP I+ R ++G+ +TGSGKT+ +L+P + Q ++ ++T L++ PT
Sbjct: 31 TPIQRKTIPLILERRSLMGVGRTGSGKTLCYLIPAI-----QRAISGEKT----LVIVPT 81
Query: 330 RELAVQIQEEALKFCKXXXXXXXXXXXXXELKQQINELKRGVD-----IIVATPGRFIDL 384
+EL +Q ++ + L RG++ I + TPG+
Sbjct: 82 KELVIQ------------------------ARRVLKRLARGIEEAWKLIEICTPGK---- 113
Query: 385 MTLNSGHLLSPTRISFVVMDEADRLFDLGFGPQVNQIMGCIRPDKQC--VLFSATFPSKL 442
+ +V+DE DR+ + P + + I C V FSAT P
Sbjct: 114 --------IEGMSADMLVVDEIDRILE---EPSLKSVFDRINESLSCQKVFFSATLPD-- 160
Query: 443 KHFASRTLKNPIQI-TINSKSLINENIQQRVQIFDEEHVKFEFLLKRLSDRLALHRGEDE 501
+P+ + + ++ INE ++ F F + S AL R D+
Sbjct: 161 ---------HPLNMKVVEIETRINETVKH-----------FFFYIPSESKEAALLRILDK 200
Query: 502 --KTIIFVGSQQXXXXXXXXXXXNGITTFPIHAGKPSAERLRNLQKFKETDNGILICTEV 559
KTI+F ++ N + I++ R N + F + IL+ T+V
Sbjct: 201 TRKTIVFAATKYAVELLLEILNKNNFESRGIYSSMDDEARRANFRDFNTSKFSILVVTDV 260
Query: 560 LSRGLNVPEVSLVIIYN 576
+RGL++P + V+ Y+
Sbjct: 261 AARGLDIPYLDTVVNYD 277
>SPCC285.03 [A] KOG0350 DEAD-box ATP-dependent RNA helicase
Length = 604
Score = 81.3 bits (199), Expect = 6e-15
Identities = 96/453 (21%), Positives = 184/453 (40%), Gaps = 87/453 (19%)
Query: 211 EPNDLGLMSEKDVEELRLSLDNIKISGKDCPK----PVT-------KWSQLGLSSEIMDL 259
+P+DL + + VE+ S ++K PK P+T ++S L +SS++++
Sbjct: 81 QPHDLLPIPQPSVEDFVDSKPHVKNITSVLPKWLAEPITVDPNTTVEFSSLNISSKLVER 140
Query: 260 ISNELQFVTLTPIQCQAIPAIMS----------GRDVIGISKTGSGKTVAFLLPLVRQI- 308
+ + +Q +P ++ G DV + TGSGKT+++++P+V+ +
Sbjct: 141 LQKQ-NITRGFAVQAAVLPLLLQDGRHGPMYSYGGDVCVSAATGSGKTLSYVIPIVQCLS 199
Query: 309 -KAQPPLAPDETGPIGLILTPTRELAVQIQEEALKFCKXXXXXXXXXXXXXELKQQINEL 367
+ P L +++ PTREL VQ+ + + L+ + +L
Sbjct: 200 HRTVPRLR-------CVVIVPTRELTVQVAKTFEYYMSGAGLQVCAWTGQKSLRHETYQL 252
Query: 368 KRG-----VDIIVATPGRFIDLMTLNSGHLLSPTRISFVVMDEADRLFDLGFGPQVNQIM 422
+D++V+TPGR +D + + S + ++V+DEADRL D F V+ +M
Sbjct: 253 NGDENECRIDVLVSTPGRLVD--HIRNDESFSLQHLRYMVIDEADRLLDQSFQDWVDTVM 310
Query: 423 ------GCIR-----------------PD------------KQCVLFSATFPSKLKHFAS 447
C++ PD Q ++FSAT AS
Sbjct: 311 MEISHPKCLQNKSNILDLDQNISPTFLPDIDTLLPYRLPSPLQKLVFSATLTRDPSKIAS 370
Query: 448 RTLKNPIQITINSKSLINEN---IQQRVQIFDEEHVKFEFLLKRLSDRLAL-----HRGE 499
L NP + + +K + ++ I+ +F E+ + S++ L H
Sbjct: 371 LKLHNPRLVLVQNKDMEVDDGGEIEDDAIVFSVPPTLQEYHVSVSSEKPILLYHLIHSKN 430
Query: 500 DEKTIIFVGSQQXXX------XXXXXXXXNGITTFPIHAGKPSAERLRNLQKFKETDNGI 553
+ FV S + + + ER + + +F D +
Sbjct: 431 LTNILCFVKSNEAAARLHRLLELIHESLNQSFSCGLFTSSLSRDERKKIISRFATGDLNL 490
Query: 554 LICTEVLSRGLNVPEVSLVIIYNAAKTIAQYVH 586
L+C+++++RG++V VI Y+ ++ YVH
Sbjct: 491 LVCSDLMARGIDVANTQNVINYDPPLSVRSYVH 523
>7296165 [A] KOG0330 ATP-dependent RNA helicase
Length = 536
Score = 79.7 bits (195), Expect = 2e-14
Identities = 80/348 (22%), Positives = 148/348 (41%), Gaps = 29/348 (8%)
Query: 255 EIMDLISNELQFVTLTPIQCQAIPAIMSGRDVIGISKTGSGKTVAFLLPLVRQIKAQPPL 314
++++ + EL LT IQ Q +P + + ++TG GKT+ +LLP+V ++ + +
Sbjct: 118 QLLENLRVELGIKLLTGIQKQGMPVVHGNEHCLIAAETGCGKTITYLLPIVDKLLQKEVV 177
Query: 315 APDETG-PIGLILTPTRELAVQIQEEALKFCKXXXXXXXXXXXXXELKQQINELKRGVDI 373
+ P LILTP RELA QI K + + +N VDI
Sbjct: 178 TERKLNTPRVLILTPGRELATQIAGVTEKLTQGTNLKVQSLLGGNTKQLMMNPQFEEVDI 237
Query: 374 IVATPGRFIDLMTLNSGHLLSPTRISFVVMDEADRLFDLGFGPQVNQIMGCI-------- 425
+VAT G L+T + ++ +V+DEAD L D F +++ +
Sbjct: 238 LVATLGALSKLVTTG---IYRMEQVRHLVLDEADTLLDDTFTDKLSYFLRRFPFHLVQKE 294
Query: 426 RPDKQCVLFSATFPSKLKHFASRTLKNPIQITINSKSLINENIQQRVQIFDEEHVKFEFL 485
Q +L SAT P+ +R + + + + +++ ++ + + HV +FL
Sbjct: 295 DAGTQMILASATMPTN-----TREILHKVIDVDTIREVVSPHLHRLM-----SHVTQKFL 344
Query: 486 LKRLSDR----LALHRGEDEK---TIIFVGSQQXXXXXXXXXXXNGITTFPIHAGKPSAE 538
+DR L+L + + K I+F +G+ ++
Sbjct: 345 RLSKADRPATLLSLVKHDLAKRRPLIVFSNKSTTSDFVSIFLNNSGVNCLNLNGDMLMKI 404
Query: 539 RLRNLQKFKETDNGILICTEVLSRGLNVPEVSLVIIYNAAKTIAQYVH 586
RL ++F+ +L T+V SRGL+ V+ ++ ++ Y+H
Sbjct: 405 RLGRFEQFQNGHCDVLSTTDVGSRGLDTTRARHVVNFDFPLHVSDYIH 452
>Hs18595975 [A] KOG0335 ATP-dependent RNA helicase
Length = 468
Score = 77.4 bits (189), Expect = 8e-14
Identities = 57/188 (30%), Positives = 94/188 (49%), Gaps = 13/188 (6%)
Query: 328 PTRELAVQIQEEALKFCKXXXXXXXXXXXXXELKQQINELKRGVDIIVATPGRFIDLMTL 387
P +E + EE KF ++ QQI L+ G ++VATPG +DLM
Sbjct: 196 PQQENWLYRYEEVRKFSYQPRVHPCVVYGDADIGQQIQVLEHGCHLLVATPGGLVDLMER 255
Query: 388 NSGHLLSPTRISFVVMDEADRLFDLGFGPQVNQIMG----CIRPDKQCVLFSATFPSKLK 443
+ ++V+DEADR+ D+GFGPQ++ I+ ++ ++FSATFP++++
Sbjct: 256 GK---IGLDFCKYLVLDEADRMLDMGFGPQIHLILEQDTMPLKGIHHIMMFSATFPNEIQ 312
Query: 444 HFASRTLKNPIQITINSKSLINENIQQRVQIFDEEHVKFEFLLKRLSDRLALHRGEDEKT 503
A L I + + +E I Q V ++ EE K FLL L+ G+D T
Sbjct: 313 MLARDFLDEYIFLAVGRVGSTSETITQEV-VWVEEPDKRSFLLDLLN-----APGKDSLT 366
Query: 504 IIFVGSQQ 511
++FV +++
Sbjct: 367 LVFVETKK 374
>CE00456 [A] KOG0350 DEAD-box ATP-dependent RNA helicase
Length = 696
Score = 74.7 bits (182), Expect = 5e-13
Identities = 111/509 (21%), Positives = 200/509 (38%), Gaps = 77/509 (15%)
Query: 215 LGLMSEKDVEELRLSLDNIKISGKDCPKPVTKWSQLGLSSEIMDLISNELQFVTLTPIQC 274
LG K++E L+++ ++ + + SQ E+ + ++ T P+Q
Sbjct: 182 LGKQEMKNLEALKVTSSWVQNATTFSATIDSSTSQKLSQIELPEHLTVPSAISTWFPVQY 241
Query: 275 QAIPAI---------MSGRDVIGISKTGSGKTVAFLLPLVRQIKAQPPLAPDETGPIGLI 325
+P++ + RDV + TGSGKT+ ++LP++ + ++P +I
Sbjct: 242 AVLPSLFFEIRSPPPLRPRDVAIAAPTGSGKTICYVLPVLAAVGSKPSKILQ-----AVI 296
Query: 326 LTPTRELAVQIQEEALKFC-KXXXXXXXXXXXXXELKQQINELKRGV-DIIVATPGRFID 383
L P + L QI +E ++ + + +++ +L ++IVATP R +
Sbjct: 297 LVPVQTLVAQIVDEFKRWNDESGVAKVVSLSGANDFEKEARQLASDPPNVIVATPARLVQ 356
Query: 384 LMTLNSGHLLSPTRISFVVMDEADRL-------------FDLGFGPQVNQIMGCIRPDK- 429
+T + +++ F+++DEADR+ F G +V + IR +
Sbjct: 357 HLTSKIPPPIDLSKLRFLIVDEADRMGKLMREEWLDLVEFLCGGMERVACLKDIIRQRRA 416
Query: 430 -QCVLFSATFPSKLKHFASRTLKNPIQITINSKSL--INENIQQRVQIFDEEHVKFEFLL 486
Q ++ SAT ++ L P + + S+ I I Q +HV L
Sbjct: 417 PQKIVLSATLSKDVEELHLWNLFKPRLFSATAVSVKDITSGIPQ------VDHVSGRLAL 470
Query: 487 -KRLSDRLA--------------LHRGEDEKTIIFVGSQQXXXXXXXXXXXNGITTFPIH 531
+S RL + R + +T+IFV F +
Sbjct: 471 PSSISHRLVVTDPKFHPLAVYQQITRNKFNRTLIFVNEVSSSNRLAHVLKELCKDQFEVD 530
Query: 532 ---AGKPSAERLRNLQKFKETDNGILICTEVLSRGLNVPEVSLVIIYNAAKTIAQYVHXX 588
A R + L+KF + +N +LIC++VL+RG ++ +V VI YN +VH
Sbjct: 531 YFTAQLFGKRRYKMLEKFNKNENRVLICSDVLARGTDLNKVDCVINYNLPADDKLFVHRA 590
Query: 589 XXXXXXXXXXXALSFVMVDELASAYILVKCMKENEL------SSVPMVVYQK-------- 634
+S V + S + VK +K L + +++K
Sbjct: 591 GRTGRAGQDGYVIS---VGDKESKRLFVKMLKVTNLWGDTVEEQMEEYIFEKDMDRYSKA 647
Query: 635 LKEMNDEFSSGLKTGKYRLI---QGFGGK 660
L+ + SS KTG R I GF K
Sbjct: 648 LESLKATVSSQAKTGGSRQIAKRSGFEAK 676
>7296530 [A] KOG0349 Putative DEAD-box RNA helicase DDX1
Length = 727
Score = 74.7 bits (182), Expect = 5e-13
Identities = 87/367 (23%), Positives = 142/367 (37%), Gaps = 50/367 (13%)
Query: 283 GRDVIGISKTGSGKTVAFLLPLVRQIKAQPPLAPDETGPIGLILTPTRELAVQIQEEALK 342
G +G + G + A P+ P P P +I+ P+RELA Q + K
Sbjct: 251 GNGFVGACQAGPEHSKAN--PITGPAAGAPSAKPAPNAPQAIIMEPSRELAEQTYNQIEK 308
Query: 343 F---CKXXXXXXXXXXXXXELKQQINELKRGVDIIVATPGRFIDLMTLNSGHLLSPTRIS 399
F L++Q +L +G I+V TPGR ++ +NSG L+ T
Sbjct: 309 FKYHLSNPEVRSLLLIGGVRLEEQKAQLMQGTHIVVGTPGRLEEM--INSG-LVLLTHCR 365
Query: 400 FVVMDEADRLFDLGFGPQVNQI---MGCIRPD---KQCVLFSATFPS-KLKHFASRTLKN 452
F V+DEAD L G+ ++++ + I D Q V+ SAT + ++K A R +
Sbjct: 366 FFVLDEADALLKQGYTELIDRLHKQIPKITSDGRRLQMVVCSATLHAFEVKKMAERLMHF 425
Query: 453 PIQITINSKSLINENIQQRVQIFDEEHVKFEFLLKR----------------------LS 490
P + + + + E + V + D + L++ LS
Sbjct: 426 PTWVDLKGEDAVPETVHHVVCLVDPQMDTTWQSLRQPIGTDGVHDRDNVHPGNHSKETLS 485
Query: 491 DRLALHRGE----------DEKTIIFVGSQQXXXXXXXXXXXNG---ITTFPIHAGKPSA 537
+ L +GE ++ IIF ++Q G + +H +
Sbjct: 486 QAVKLLKGEYCVHAIDKHNMDRAIIFCRTKQDCDNLERFLRQRGGKHYSCVCLHGDRKPQ 545
Query: 538 ERLRNLQKFKETDNGILICTEVLSRGLNVPEVSLVIIYNAAKTIAQYVHXXXXXXXXXXX 597
ER NL+ FK LICT+V +RGL++ + +I YVH
Sbjct: 546 ERKENLEMFKRQQVKFLICTDVAARGLDITGLPFMINVTLPDDKTNYVHRIGRVGRAERM 605
Query: 598 XXALSFV 604
A+S V
Sbjct: 606 GLAISLV 612
>YNR038w [A] KOG0350 DEAD-box ATP-dependent RNA helicase
Length = 629
Score = 73.9 bits (180), Expect = 9e-13
Identities = 75/334 (22%), Positives = 136/334 (40%), Gaps = 40/334 (11%)
Query: 285 DVIGISKTGSGKTVAFLLPLVRQIKAQPPLAPDETGPIGLILTPTRELAVQIQEEALKFC 344
D++ + TGSGKT+A+ +P+V+ + +I+ PT+ L Q+ K
Sbjct: 229 DILVNAATGSGKTLAYSIPIVQTL-----FKRQINRLRCIIIVPTKLLINQVYTTLTKLT 283
Query: 345 KXXXXXXXXXXXXXELKQQINELKR-GVDIIVATPGRFIDLMTLNSGHLLSPTRISFVVM 403
+ LK + +L DI++ TPGR +D + + S +L + F+++
Sbjct: 284 QGTSLIVSIAKLENSLKDEHKKLSNLEPDILITTPGRLVDHLNMKSINL---KNLKFLII 340
Query: 404 DEADRLFDLGFGPQVNQIMGCIRPDKQCVL--------FSATFPSKLKHFASRTLKNP-- 453
DEADRL + F ++M ++ DK L FSAT + + L P
Sbjct: 341 DEADRLLNQSFQGWCPKLMSHLKTDKLDTLPGNVIKMIFSATLTTNTEKLNGLNLYKPKL 400
Query: 454 -IQITINSKSLINENIQQRVQIFDEEHVKFEFLLKRLSDRLALHRGEDEKTIIFVGSQQX 512
++ T L N+ + + I + V +L + H K +IFV S +
Sbjct: 401 FLKQTDKLYQLPNKLNEFNINIPTAKSVYKPLILLYSICQFMAHSPIAAKILIFVKSNES 460
Query: 513 X----------------XXXXXXXXXNGITTFPIHAGKPSAERLRNLQKFKETDNG---- 552
++ +++ AE + + F
Sbjct: 461 SIRLSKLLQLICESRSQSSVLKNLQNLAVSINSVNSNNSKAENKKIVANFSHHSESAGIT 520
Query: 553 ILICTEVLSRGLNVPEVSLVIIYNAAKTIAQYVH 586
ILI T+++SRG+++ +++ VI Y+ + QYVH
Sbjct: 521 ILITTDIMSRGIDINDITQVINYDPPMSSQQYVH 554
>7294064 [A] KOG0350 DEAD-box ATP-dependent RNA helicase
Length = 687
Score = 73.2 bits (178), Expect = 2e-12
Identities = 88/388 (22%), Positives = 148/388 (37%), Gaps = 71/388 (18%)
Query: 263 ELQFVTLTPIQCQAIPAIMSG---------RDVIGISKTGSGKTVAFLLPLVRQIKAQPP 313
+++ L P+Q Q IP I+ RD+ + TGSGKT+AF +P+V+ + +
Sbjct: 154 QMKIKRLFPVQKQVIPWILEAHAKPPPFRPRDICVSAPTGSGKTLAFAIPIVQLLSQRV- 212
Query: 314 LAPDETGPIGLILTPTRELAVQIQEEALKFCKXXXXXXXXXXXXXELKQQINELKR---- 369
+ L++ P ELA+Q+ + C +L+ + +L
Sbjct: 213 ----DCKVRALVVLPVAELALQVYRVISELCSKTELEVCLLSKQHKLEDEQEKLVEQYKG 268
Query: 370 ----GVDIIVATPGRFIDLMTLNSGHLLSPTRISFVVMDEADRLFDLGF----------- 414
DI+V TPGR +D + G L + F+V+DEADR+ D F
Sbjct: 269 KYYSKADIVVTTPGRLVDHLHATKGFCLK--SLKFLVIDEADRIMDAVFQNWLYHLDSHV 326
Query: 415 ---------GPQV----NQIMGCIRPDKQCVLFSATF---PSKLK-------HFASRTLK 451
G Q ++ +LFSAT P KL+ + L
Sbjct: 327 KETTDQLLAGTQAPLCYAELQASFGKQPHKLLFSATLSQDPEKLQDLRLFQPRLFATVLT 386
Query: 452 NPIQITINSKSLINENIQQRVQI---------FDEEHVKFEFLLKRLSDRLALHRGEDEK 502
P+ + E + Q E++ E LK L+ + + + ++
Sbjct: 387 MPVLKDATEEGADTEALTDPGQFVGRYTTPAELTEQYCVTELRLKPLTVFALVEKYKWKR 446
Query: 503 TIIFVGSQQXXXXXX---XXXXXNGITTFPIHAGKPSAE-RLRNLQKFKETDNGILICTE 558
+ F S T +G SA+ R L+ F LIC++
Sbjct: 447 FLCFTNSSDQATRLTFVLKVLFQKYSTKVSELSGNLSAKVRNERLRDFAAGKINGLICSD 506
Query: 559 VLSRGLNVPEVSLVIIYNAAKTIAQYVH 586
L+RG++V +V +V+ Y + I Y+H
Sbjct: 507 ALARGIDVADVDVVLSYETPRHITTYIH 534
>YGL064c [A] KOG0335 ATP-dependent RNA helicase
Length = 561
Score = 72.0 bits (175), Expect = 3e-12
Identities = 61/244 (25%), Positives = 99/244 (40%), Gaps = 35/244 (14%)
Query: 224 EELRLSLDNIKISGKDCPKPVTKWSQLGLSSEIMDLISNELQFVTLTPIQCQAIPAIMSG 283
E L+L K S P P+ + +S +MD +Q AI A
Sbjct: 120 ESLKLQDSRKKTSENIIPSPIQTVAIKRISKNLMD-----------PKLQIHAIAA---- 164
Query: 284 RDVIGISKTGSGKTVAFLLPLVRQIKAQPPLAPDETGPI-------GLILTPTRELAVQI 336
+TGSGKT+A+L+PL+ +K Q P+ + +IL PT EL Q+
Sbjct: 165 -------ETGSGKTMAYLIPLIDYLKRQELETPELWETLRKNVLIRSIILVPTHELVDQV 217
Query: 337 QEEALKFCKXXXXXXXXXXXXXELKQQINELKRGVDIIVATPGRFIDLMTLNSGHLLSP- 395
E K + + +K +DI+V TPG+ ++L ++ + P
Sbjct: 218 YETVSKTKTLLGLNSFKWDKATSYRDLLENIKNRIDILVTTPGKLLNLFSIRM--ITRPD 275
Query: 396 ---TRISFVVMDEADRLFDLGFGPQVNQIMGCIRPDKQCVLFSATFPSKLKHFASRTLKN 452
+++ FVV+DEAD L D + + + + I + SAT P + R
Sbjct: 276 KVLSKVGFVVLDEADTLLDRSWLEETHSAIKRIPNINHLIFCSATIPQEFNKTMQRLFPT 335
Query: 453 PIQI 456
+ I
Sbjct: 336 VVPI 339
>CE27320 [A] KOG0335 ATP-dependent RNA helicase
Length = 463
Score = 71.2 bits (173), Expect = 6e-12
Identities = 42/114 (36%), Positives = 65/114 (56%), Gaps = 11/114 (9%)
Query: 233 IKISGKDCPKPVTKWSQLGLSSEIMDLISNELQFVTLTPIQCQAIPAIMSGRDVIGISKT 292
++ +G D P+P++ +S L L I + I + TP+Q +IPA+ GRD++ ++T
Sbjct: 351 VEATGDDVPQPISLFSDLSLHEWIEENIKTA-GYDRPTPVQKYSIPALQGGRDLMSCAQT 409
Query: 293 GSGKTVAFLLPLVRQIKAQPPLAPDET----------GPIGLILTPTRELAVQI 336
GSGKT AFL+PLV I P A + P L+L+PTREL++Q+
Sbjct: 410 GSGKTAAFLVPLVNAILQDGPDAVHRSVTSSGGRKKQYPSALVLSPTRELSLQV 463
>Hs4826686 [A] KOG0349 Putative DEAD-box RNA helicase DDX1
Length = 740
Score = 70.5 bits (171), Expect = 1e-11
Identities = 75/340 (22%), Positives = 137/340 (40%), Gaps = 55/340 (16%)
Query: 321 PIGLILTPTRELAVQIQEEALKFCKXXXX---XXXXXXXXXELKQQINELKRGVDIIVAT 377
P LI+ P+RELA Q +F K + Q++ L+ GVDI+V T
Sbjct: 287 PKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGT 346
Query: 378 PGRFIDLMTLNSGHLLSPTRISFVVMDEADRLFDLGFGPQVNQIMGCI------RPDKQC 431
PGR DL++ L+ +++ F+V+DEAD L G+ +N++ I Q
Sbjct: 347 PGRLDDLVSTGK---LNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQV 403
Query: 432 VLFSATFPS-KLKHFASRTLKNPIQITINSKSLINENIQQRV-----------QIFDEEH 479
++ SAT S +K + + + P + + + + + + V + + H
Sbjct: 404 IVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSH 463
Query: 480 VKFEFLLKR------------LSDRLALHRGE----------DEKTIIFVGSQQXXXXXX 517
++ + + + S+ + + +GE ++ IIF ++
Sbjct: 464 IRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLE 523
Query: 518 XXXXXNG---------ITTFPIHAGKPSAERLRNLQKFKETDNGILICTEVLSRGLNVPE 568
G + +H + ER +NL++FK+ D LICT+V +RG+++
Sbjct: 524 QYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHG 583
Query: 569 VSLVIIYNAAKTIAQYVHXXXXXXXXXXXXXALSFVMVDE 608
V VI YVH A+S V ++
Sbjct: 584 VPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEK 623
>Hs21040373 [A] KOG0329 ATP-dependent RNA helicase
Length = 316
Score = 68.9 bits (167), Expect = 3e-11
Identities = 52/175 (29%), Positives = 84/175 (47%), Gaps = 12/175 (6%)
Query: 272 IQCQAIPAIMSGRDVIGISKTGSGKTVAFLLPLVRQIKAQPPLAPDETGPIGLILTPTRE 331
+Q + IP + G DV+ +K+G GKT F+L ++QI+ P L++ TRE
Sbjct: 70 VQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIE------PVNGQVTVLVMCHTRE 123
Query: 332 LAVQIQEEALKFCKXX-XXXXXXXXXXXELKQQINELKRGV-DIIVATPGRFIDLMTLNS 389
LA QI +E +F K +K+ LK+ ++V TPGR + L+ S
Sbjct: 124 LAFQISKEYERFSKYMPSVKVSVFFGGLSIKKDEEVLKKNCPHVVVGTPGRILALVRNRS 183
Query: 390 GHLLSPTRISFVVMDEADRLFD-LGFGPQVNQIMGCIRPDKQCVLFSATFPSKLK 443
S + V+DE D++ + L V +I +KQC++FSAT ++
Sbjct: 184 ---FSLKNVKHFVLDECDKMLEQLDMRRDVQEIFRLTPHEKQCMMFSATLSKDIR 235
>At4g15850 [A] KOG0350 DEAD-box ATP-dependent RNA helicase
Length = 474
Score = 66.6 bits (161), Expect = 1e-10
Identities = 80/365 (21%), Positives = 138/365 (36%), Gaps = 75/365 (20%)
Query: 284 RDVIGISKTGSGKTVAFLLPLVRQIKAQPPLAPDETGPIGLILTPTRELAVQIQEEALKF 343
RD+ S TGSGKT+++ LP+V+ + ++P L++ PTR+LA+Q+++
Sbjct: 25 RDICVNSPTGSGKTLSYALPIVQLLASRPVRCLR-----ALVVLPTRDLALQVKDVFDAI 79
Query: 344 CKXXXXXXXXXXXXXELKQQINE---------------------LKRGVDIIVATPGRFI 382
+ +I++ L+ VDI+VATPGR +
Sbjct: 80 APAVGLSVGSAVGQSSIAGEISQLIKTPKLDAGICYDPDDLSQNLESAVDILVATPGRLM 139
Query: 383 DLMTLNSGHLLSPTRISFVVMDEADRLFD----------------------LGFGPQVNQ 420
D + G L R ++V+DE DRL F P V
Sbjct: 140 DHINNTKGFTLEHLR--YLVVDETDRLLREAYQSWLPTVLQLTQTSDDSLFPSFTPFVPS 197
Query: 421 IMGCIR----------------PDKQCVLFSATFPSKLKHFASRTLKNPIQITINSKSLI 464
G ++ P ++ SAT L +P+ +T
Sbjct: 198 AFGSLQTVRRQSVERGFKGKPYPRLVKMVLSATLTQDPSKLIQLDLHHPLFMTTGGSRYR 257
Query: 465 NENIQQRVQIFDEEHVKFEFLLKRLSDRLALHRGEDEKTIIFVGSQQXXXXXXXXXXXNG 524
+ +++ E +K +L+ L E EK IIF S + G
Sbjct: 258 LPEKLECLRLICETGMKPVYLVALLKS------WEGEKCIIFTSSVETTRRLCKLLNFFG 311
Query: 525 ---ITTFPIHAGKPSAERLRNLQKFKETDNGILICTEVLSRGLNVPEVSLVIIYNAAKTI 581
I G + R + L+ F++ D +L+ ++ L+RG++V V+ VI Y+
Sbjct: 312 DPKIKAKEYSGGLNQSLRSKELKAFRKGDIQVLVASDALTRGMDVKGVTNVINYDMPPFA 371
Query: 582 AQYVH 586
++H
Sbjct: 372 KTFIH 376
>Hs17475661 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 240
Score = 62.8 bits (151), Expect = 2e-09
Identities = 54/236 (22%), Positives = 93/236 (38%), Gaps = 60/236 (25%)
Query: 373 IIVATPGRFIDLMTLNSGHLLSPTRISFVVMDEADRLFDLGFGPQVNQIMGCIRPDKQCV 432
II+ TPGR D++ + LSP I V+DEAD + F Q+ I + + Q V
Sbjct: 62 IIMGTPGRVSDML---NWRYLSPKYIKMFVLDEADEMLSHRFKDQICDIFQMLNSNTQVV 118
Query: 433 LFSATFPSKLKHFASRTLKNPIQITINSKSLINENIQQRVQIFDEEHVKFEFLLKRLSDR 492
L SAT PS + + +++PI+I + + L ++
Sbjct: 119 LLSATIPSDVLEVTKKFMRDPIRILVKKEELTLKDFTVS--------------------- 157
Query: 493 LALHRGEDEKTIIFVGSQQXXXXXXXXXXXNGITTFPIHAGKPSAERLRNLQKFKETDNG 552
A+H D+K ER +++++ +
Sbjct: 158 -AMHGDMDQK-----------------------------------ERDVVMREYRSGSSR 181
Query: 553 ILICTEVLSRGLNVPEVSLVIIYNAAKTIAQYVHXXXXXXXXXXXXXALSFVMVDE 608
+LI T++L RG++V ++SLVI Y+ Y+H A++ V D+
Sbjct: 182 VLITTDLLPRGIDVQQLSLVINYDPPTNRENYIHRIGRGGQFGHKGVAINMVAEDK 237
>Hs22070384 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 447
Score = 59.7 bits (143), Expect = 2e-08
Identities = 33/86 (38%), Positives = 52/86 (60%), Gaps = 2/86 (2%)
Query: 366 ELKRGVDIIVATPGRFIDLMTLNSGHLLSPTRISFVVMDEADRLFDLGFGPQVNQIMGCI 425
+L G++IIVAT GR +D M G + + +V+DEADR+ D+GF ++ QI+ +
Sbjct: 12 KLANGINIIVATSGRLLDHMQNTPGFMYK--NLQCLVIDEADRILDVGFEEELKQIIKLL 69
Query: 426 RPDKQCVLFSATFPSKLKHFASRTLK 451
+Q +LFSAT K++ A +LK
Sbjct: 70 LTHRQTMLFSATQTQKVEDLARISLK 95
>YMR190c [L] KOG0351 ATP-dependent DNA helicase
Length = 1447
Score = 58.2 bits (139), Expect = 5e-08
Identities = 85/388 (21%), Positives = 157/388 (39%), Gaps = 38/388 (9%)
Query: 210 REPNDLGLMSEKDVEELRLSLDNIKISGKDCPK---PVTKWSQLGLSSEIMDLISNELQF 266
RE + + E+D + SL +I K P WS E++ + +
Sbjct: 622 REKSSVSQKDEEDDFDDDFSLSDIVSKSNLSSKTNGPTYPWSD-----EVLYRLHEVFKL 676
Query: 267 VTLTPIQCQAIPAIMSGRDVIGISKTGSGKTVAFLLPLVRQIKAQPPLAPDETGPIGLIL 326
P Q +A+ A + G+DV + TG GK++ + LP V + +T +++
Sbjct: 677 PGFRPNQLEAVNATLQGKDVFVLMPTGGGKSLCYQLPAV--------VKSGKTHGTTIVI 728
Query: 327 TPTRELAVQIQEEALKFCKXXXXXXXXXXXXXELKQQINELKRG-VDIIVATPGRF--ID 383
+P L +Q Q E L + +Q N G +D++ +P +
Sbjct: 729 SPLISL-MQDQVEHLLNKNIKASMFSSRGTAEQRRQTFNLFINGLLDLVYISPEMISASE 787
Query: 384 LMTLNSGHLLSPTRISFVVMDEADRLFDLG--FGPQVNQIMGCIR--PDKQCVLFSATFP 439
L + +++ +V+DEA + + G F P ++ R PD + +AT
Sbjct: 788 QCKRAISRLYADGKLARIVVDEAHCVSNWGHDFRPDYKELKFFKREYPDIPMIALTATAS 847
Query: 440 SKLKH--FASRTLKNPIQITINSKSLINENIQQRVQIFDEEHVKFEFLLKRLSDRLALHR 497
+++ + LK P+ + K N R ++ E + K + + + D + R
Sbjct: 848 EQVRMDIIHNLELKEPVFL----KQSFN-----RTNLYYEVNKKTKNTIFEICDAVK-SR 897
Query: 498 GEDEKTIIFVGSQQXXXXXXXXXXXNGITTFPIHAGKPSAERLRNLQKFKETDNGILIC- 556
+++ II+ S++ NGI HAG ERL ++QK + D +IC
Sbjct: 898 FKNQTGIIYCHSKKSCEQTSAQMQRNGIKCAYYHAGMEPDERL-SVQKAWQADEIQVICA 956
Query: 557 TEVLSRGLNVPEVSLVIIYNAAKTIAQY 584
T G++ P+V V + +T+ Y
Sbjct: 957 TVAFGMGIDKPDVRFVYHFTVPRTLEGY 984
>Hs20548087 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 344
Score = 57.8 bits (138), Expect = 7e-08
Identities = 62/254 (24%), Positives = 108/254 (42%), Gaps = 29/254 (11%)
Query: 241 PKPV--TKWSQLGLSSEIMDLISNELQFVTL------TPIQCQAIPAIMSGRDVIGISKT 292
PK V + W+++ S + M+L+ + L + + IQ +AI + G VI +++
Sbjct: 64 PKGVIESNWNEIVDSFDDMNLLESLLHGIYAYGSEKPSAIQQRAILPCIRGYVVIVQAQS 123
Query: 293 GSGKTVAFLLPLVRQIKAQPPLAPDETGPIGLILTPTRELAVQIQEEALKFCKXXXXXXX 352
G+GK F + ++ QI+ L + T+ L IQ+ +
Sbjct: 124 GTGKMATFSISILHQIE--------------LDVKATQAL---IQKVVIALGDHMDASCH 166
Query: 353 XXXXXXELKQQINELK-RGVDIIVATPGRFIDLMTLNSGHLLSPTRISFVVMDEADRLFD 411
+ ++ +L+ IIV TPG D++ + LSP I V+D+ D +
Sbjct: 167 TCIGGTNVHAEVQKLQMEAPHIIVGTPGHVFDML---NWRYLSPKYIKMFVLDKTDEMLS 223
Query: 412 LGFGPQVNQIMGCIRPDKQCVLFSATFPSKLKHFASRTLKNPIQITINSKSLINENIQQR 471
GF Q+ I + + Q VL SAT PS + + ++ I I + + L E I Q
Sbjct: 224 HGFKDQIYGIFQELNSNTQVVLPSATMPSDVLEVTKKFMREHIWILVKKEELTLEGICQF 283
Query: 472 VQIFDEEHVKFEFL 485
+ E K + L
Sbjct: 284 YINMEREEWKLDTL 297
>Hs4759032 [L] KOG0352 ATP-dependent DNA helicase
Length = 410
Score = 57.0 bits (136), Expect = 1e-07
Identities = 80/330 (24%), Positives = 142/330 (42%), Gaps = 32/330 (9%)
Query: 270 TPIQCQAIPAIMSG-RDVIGISKTGSGKTVAFLLPLVRQIKAQPPLAPDETGPIGLILTP 328
TP+Q A A++ G +DV TG+GK++ + LP + LA T ++++P
Sbjct: 31 TPLQESATMAVVKGNKDVFVCMPTGAGKSLCYQLPAL--------LAKGIT----IVVSP 78
Query: 329 TRELAVQIQEEALKFCKXXXXXXXXXXXXXELKQQINELKRG---VDIIVATPGRFIDLM 385
L +Q Q + L K E K+ + +L+R I+ TP
Sbjct: 79 LIAL-IQDQVDHLLTLKVRVSSLNSKLSAQERKELLADLEREKPQTKILYITPEMAASSS 137
Query: 386 ---TLNSGHLLSPTRISFVVMDEADRLFDLGFGPQVNQI-MGCIRP---DKQCVLFSATF 438
TLNS L+S +S++V+DEA + G + + + +G +R CV +AT
Sbjct: 138 FQPTLNS--LVSRHLLSYLVVDEAHCVSQWGHDFRPDYLRLGALRSRLGHAPCVALTATA 195
Query: 439 PSKLKH--FASRTLKNPIQI--TINSKSLINENIQQRVQIFDEEHVKFEFLLKRLSDRLA 494
+++ FA+ LK P+ I T ++ + ++Q + I D +F LK L
Sbjct: 196 TPQVQEDVFAALHLKKPVAIFKTPCFRANLFYDVQFKELISDPYGNLKDFCLKALGQEA- 254
Query: 495 LHRGEDEKTIIFVGSQQXXXXXXXXXXXNGITTFPIHAGKPSAERLRNLQKFKETDNGIL 554
+G I++ +++ G+ HAG ++ER + E ++
Sbjct: 255 -DKGLSGCGIVYCRTREACEQLAIELSCRGVNAKAYHAGLKASERTLVQNDWMEEKVPVI 313
Query: 555 ICTEVLSRGLNVPEVSLVIIYNAAKTIAQY 584
+ T G++ V V +N AK++A Y
Sbjct: 314 VATISFGMGVDKANVRFVAHWNIAKSMAGY 343
>SPAC212.11 [L] KOG0351 ATP-dependent DNA helicase
Length = 1887
Score = 55.5 bits (132), Expect = 3e-07
Identities = 81/356 (22%), Positives = 143/356 (39%), Gaps = 41/356 (11%)
Query: 279 AIMSGRDVIGISKTGSGKTVAFLLPLVRQIKAQPPLAPDETGPIGLILTP----TRELAV 334
++++ ++I + TG GK+++FL+P + + K Q P + L+L P +++ +
Sbjct: 1202 SLLNRMNLITVLPTGGGKSLSFLIPALIEKKRQTP--GKVMNMVTLVLVPMMSLRQDMML 1259
Query: 335 QIQEEALKFCKXXXXXXXXXXXXXELKQQINELKRGVDIIVATPGRFIDLMTLNSG---- 390
++ E+ L C E + D+ + T + NSG
Sbjct: 1260 RVNEKGLLVCSGNWTAFKDVRLTLETQLP--------DLFILT----YESALTNSGLRFF 1307
Query: 391 -HLLSPTRISFVVMDEADRLFDLGFG----PQVNQIMGCIRPDKQCVLFSATFPSKLKHF 445
L + R++ VV+DEA L G + +++ G P L SATFP +L+
Sbjct: 1308 ESLATLGRLARVVIDEAHLLLTSGAWRTALSRASRLSGLYAP---LHLLSATFPRQLEMV 1364
Query: 446 ASRTLKNPIQITINSKSLINENIQQRVQIFDEEHVKFEFLLKRLSDRLALHRGEDEKTII 505
A +T + + S ENI + +D + +F L+ L R + G D + II
Sbjct: 1365 ARQTFCTNFYV-LRETSTARENIFYFLHPYD--NTEFLLDLRTLMKRTKVFEG-DGRAII 1420
Query: 506 FVGSQQXXXXXXXXXXXNGI---TTFPIHAGKPS-AERLRNLQKFKETD--NGILICTEV 559
F +++ + + T I+ G S ER N F+ + I+I T+
Sbjct: 1421 FCRTKKDVEYIHRRLHQSDLFAHTHVTIYTGDVSDEERQMNFDAFRNANGKTRIMIATKA 1480
Query: 560 LSRGLNVPEVSLVIIYNAAKTIAQYV-HXXXXXXXXXXXXXALSFVMVDELASAYI 614
G+N V LV+ Y + YV AL + D S+Y+
Sbjct: 1481 FGLGINYMGVRLVVHYGLPASSMDYVQETGRAGRDGKYAIAALFYEKYDSTWSSYV 1536
>CE28975 [A] KOG0335 ATP-dependent RNA helicase
Length = 520
Score = 53.9 bits (128), Expect = 1e-06
Identities = 79/353 (22%), Positives = 132/353 (37%), Gaps = 42/353 (11%)
Query: 269 LTPIQCQAIPAIMSGRDVIGISKTGSGKTVAFLLPLVRQIKAQPPLAPD---ETGPIGLI 325
L +Q ++I AI R ++ + TG GKT AFL+P + + PL + P LI
Sbjct: 115 LNAVQQKSIQAIRDRRGLLVDAPTGIGKTYAFLIPAIEIALRERPLLTNISTTPSPTILI 174
Query: 326 LTPTRELAVQI---QEEALKFCKXXXXXXXXXXXXXELKQQINELKRGVDIIVATPGRFI 382
L T L Q+ E L +L K DI T G+
Sbjct: 175 LANTNSLVEQLFNRCEVLLGLIDMEDIIPIRDIKIEKLVASYQFTKDQCDIAFCTMGK-- 232
Query: 383 DLMTLNSGHLLSPTRISFVVMDEADRLFDLG-FGPQVNQIMGCIRPDKQCVLFSATFPSK 441
L + + +++DE+D++ D+ FG ++ ++ ++ D L S F +
Sbjct: 233 -LKASIEDKTILLDNLKMMILDESDKMIDIACFGNDIDWVLDQLQEDVLRNLQSCFFSAS 291
Query: 442 LKHFASRTLKNPIQITINSKSLINEN-------------IQQRV-----QIFDEEH---- 479
+R I +T ++ EN I QRV Q ++ H
Sbjct: 292 ----HNRNEDGSIALTSRQSRMLGENPWSLIHCPRLPGYITQRVIRIGGQRVNDIHSNPW 347
Query: 480 -VKFEFLLKRLSDRL----ALHRGEDEKTI-IFVGSQQXXXXXXXXXXXNGITTFPIHAG 533
VK + K L D L + G + TI IF + G P+ +
Sbjct: 348 IVKMNIICKLLDDDLKEMGSTKEGPWKHTIAIFCETVSRVIQVTMALRQMGYNFKPVCSS 407
Query: 534 KPSAERLRNLQKFKETDNGILICTEVLSRGLNVPEVSLVIIYNAAKTIAQYVH 586
++ L + + ++CT ++SRG++V V II + Y+H
Sbjct: 408 VLKQQQAITLNDLEFCNIHGVVCTNIMSRGIDVSSVKQTIIMEMSTDFPSYMH 460
>7299503 [L] KOG0351 ATP-dependent DNA helicase
Length = 1487
Score = 50.8 bits (120), Expect = 8e-06
Identities = 75/348 (21%), Positives = 136/348 (38%), Gaps = 43/348 (12%)
Query: 253 SSEIMDLISNELQFVTLTPIQCQAIPAIMSGRDVIGISKTGSGKTVAFLLPLVRQIKAQP 312
S+ +M +S + P Q Q I A + G D + TG GK++ + LP +
Sbjct: 722 STRLMHGLSYSFGLKSFRPNQLQVINATLLGNDCFVLMPTGGGKSLCYQLPAIL------ 775
Query: 313 PLAPDETGPIGLILTPTRELAV-QIQEEA-LKFCKXXXXXXXXXXXXXELKQQINELKRG 370
T + ++++P + L QI + A L C + + +
Sbjct: 776 ------TEGVTIVISPLKSLIFDQINKLASLDICAKSLSGEQKMADVMAIYRDLESQPPM 829
Query: 371 VDIIVATP------GRFID-LMTLNSGHLLSPTRISFVVMDEADRLFDLGFGPQVNQIMG 423
V ++ TP RF D L TLNS + IS V+DEA + G
Sbjct: 830 VKLLYVTPEKISSSARFQDTLDTLNSNNY-----ISRFVIDEAHCVSQWGHD-------- 876
Query: 424 CIRPD-KQCVLFSATFPSKLKHFASRTLKNPIQITINSKSLINENIQQRVQIFDEEHVKF 482
RPD K+ + FP+ + T +++ I ++ L +N + + F+ ++++
Sbjct: 877 -FRPDYKKLGVLKKRFPNVPTIALTATATPRVRLDILAQ-LNLKNCKWFLSSFNRSNLRY 934
Query: 483 EFLLKR----LSD--RLALHRGEDEKTIIFVGSQQXXXXXXXXXXXNGITTFPIHAGKPS 536
L K+ L D R + + II+ S++ +G+ HAG
Sbjct: 935 RVLPKKGVSTLDDISRYIRSKPQHFSGIIYCLSRKECDETSKKMCKDGVRAVSYHAGLTD 994
Query: 537 AERLRNLQKFKETDNGILICTEVLSRGLNVPEVSLVIIYNAAKTIAQY 584
+R + + ++ T G++ P+V V+ Y+ K+I Y
Sbjct: 995 TDRESRQKDWLTGKMRVICATVAFGMGIDKPDVRFVLHYSLPKSIEGY 1042
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.317 0.135 0.379
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,231,165
Number of Sequences: 60738
Number of extensions: 1488334
Number of successful extensions: 4557
Number of sequences better than 1.0e-05: 234
Number of HSP's better than 0.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 97
Number of HSP's that attempted gapping in prelim test: 3566
Number of HSP's gapped (non-prelim): 311
length of query: 812
length of database: 30,389,216
effective HSP length: 115
effective length of query: 697
effective length of database: 23,404,346
effective search space: 16312829162
effective search space used: 16312829162
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)