ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactVI2772 good Z KOG1523 Cytoskeleton Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactVI2772 978492 979601 370
(370 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YBR234c [Z] KOG1523 Actin-related protein Arp2/3 complex subunit... 531 e-151
SPBC14C8.06 [Z] KOG1523 Actin-related protein Arp2/3 complex sub... 253 4e-67
7298100 [Z] KOG1523 Actin-related protein Arp2/3 complex subunit... 251 9e-67
CE24672 [Z] KOG1523 Actin-related protein Arp2/3 complex subunit... 243 3e-64
Hs5454078 [Z] KOG1523 Actin-related protein Arp2/3 complex subun... 243 4e-64
Hs5031601 [Z] KOG1523 Actin-related protein Arp2/3 complex subun... 236 5e-62
At2g31300 [Z] KOG1523 Actin-related protein Arp2/3 complex subun... 201 1e-51
At2g30910 [Z] KOG1523 Actin-related protein Arp2/3 complex subun... 200 3e-51
Hs20484677 [Z] KOG1523 Actin-related protein Arp2/3 complex subu... 122 1e-27
>YBR234c [Z] KOG1523 Actin-related protein Arp2/3 complex subunit
ARPC1/p41-ARC
Length = 384
Score = 531 bits (1369), Expect = e-151
Identities = 249/374 (66%), Positives = 304/374 (80%), Gaps = 7/374 (1%)
Query: 4 IAAQFKLVKGSIYSHCFNQDRSLLAITYDTDCYVYKVSAAKQPQLVAVLPDHDKTVTAVD 63
+ A +KLVK IYSHCF+QD+S+LA+T +TDC VY+VS P L A L DHDKT+TAVD
Sbjct: 11 VVAVYKLVKAPIYSHCFSQDKSILAVTCETDCLVYRVSNNTPPVLFATLKDHDKTITAVD 70
Query: 64 ISVHGRIVTCSQDRNAIVWEPLSNGTYKPTLVLLRINRAATCVSWASSGYKFAVGSSARI 123
IS+HGRIVTCSQDRNA VWEPLS+GTYKPTLVLLRINRAAT V+WA +GYKFAVGSSARI
Sbjct: 71 ISIHGRIVTCSQDRNAYVWEPLSDGTYKPTLVLLRINRAATSVTWAPNGYKFAVGSSARI 130
Query: 124 IAVCYYEQENDWWVSKHIKKPIKSTINALSWHSNCVLLACGGTDGYARVFSGFIKGLDTK 183
IAVCYYE EN+WWVSKHIKKPIKSTIN LSWH+N VLLA GGTDG+ RVFSGFIKGLD+K
Sbjct: 131 IAVCYYEHENNWWVSKHIKKPIKSTINCLSWHANGVLLAAGGTDGFMRVFSGFIKGLDSK 190
Query: 184 EQVAGSPWGEKFPFGSLVREWYQGAWIHDIKWRSSIDKVAFVTHDGSLNITDYTDDIKSV 243
E VAGSPWG+KFPFG L+REWYQG++IHD++WRS ++++A+V HDG+LN+ DY ++SV
Sbjct: 191 ESVAGSPWGQKFPFGCLIREWYQGSYIHDVEWRSQMERIAYVAHDGTLNVVDYQSPVQSV 250
Query: 244 DNPEGLPFITLCWINDHEILAAGFSNHPVLYSEGSRGWEVSKILD-------SPVKSAGK 296
+ PEGLP+ +L WINDHEI+ G+S HPVL+SE S GW+ +K LD S + ++G
Sbjct: 251 NAPEGLPYRSLVWINDHEIVCGGYSCHPVLFSEASEGWKFAKNLDKSDNNKSSALTASGN 310
Query: 297 LVASTGDDEEEGAFGMSALRKFKELDLKGKVSQQEEKSTHVNSITELAAYKESNNNVTQV 356
+G+++E FG+SALRKFKELDLKGKVS ++S H N+I EL + ESN +TQV
Sbjct: 311 TDELSGNNDESSTFGISALRKFKELDLKGKVSTDVQESAHENAIVELRPFAESNGQITQV 370
Query: 357 SSVGLDGKLVIYKL 370
SS GLDGK+VIY +
Sbjct: 371 SSCGLDGKIVIYTI 384
>SPBC14C8.06 [Z] KOG1523 Actin-related protein Arp2/3 complex subunit
ARPC1/p41-ARC
Length = 377
Score = 253 bits (645), Expect = 4e-67
Identities = 146/365 (40%), Positives = 204/365 (55%), Gaps = 12/365 (3%)
Query: 16 YSHCFNQDRSLLAITYDTDCYVYKVSAAKQPQLVAVLPDHDKTVTAVDISVHG-RIVTCS 74
Y H FN R+ T T+ + DHDK VT VD + RIVTCS
Sbjct: 15 YEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCS 74
Query: 75 QDRNAIVWEPLSNGTYKPTLVLLRINRAATCVSWASSGYKFAVGSSARIIAVCYYEQEND 134
QDRNA V+E +GT+K TLVLLR+NRAAT V W+ + KFAVGS AR+I+VCY+EQEND
Sbjct: 75 QDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQEND 134
Query: 135 WWVSKHIKKPIKSTINALSWHSNCVLLACGGTDGYARVFSGFIKGLDTKEQVAGSPWGEK 194
WWVSKH+K+P++STI +L WH N VLLA G D A V S +++ +D K + S WG +
Sbjct: 135 WWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPE--ASVWGSR 192
Query: 195 FPFGSLVREWYQGAWIHDIKWRSSIDKVAFVTHDGSLNIT-----DYTDDIKSVDNPEGL 249
PF ++ E+ G W+H + + S + +A+ HD S+ I + L
Sbjct: 193 LPFNTVCAEYPSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQL 252
Query: 250 PFITLCWINDHEILAAGFSNHPVLYSEGSRGWEVSKILDSPV-KSAGKLVASTGDD-EEE 307
P +L W N+ I+AAG++ P+L GW ++ LD+ K++ +TG+ EEE
Sbjct: 253 PLRSLLWANESAIVAAGYNYSPILLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEE 312
Query: 308 GAFGMSALRK-FKELDLKGKVSQQEEKST-HVNSITELAAYKESNNNVTQVSSVGLDGKL 365
G +ALR F+ +DLKG T H N I L Y + N+T +S G DG++
Sbjct: 313 GPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRV 372
Query: 366 VIYKL 370
V++ L
Sbjct: 373 VLWTL 377
>7298100 [Z] KOG1523 Actin-related protein Arp2/3 complex subunit
ARPC1/p41-ARC
Length = 377
Score = 251 bits (642), Expect = 9e-67
Identities = 147/369 (39%), Positives = 218/369 (58%), Gaps = 30/369 (8%)
Query: 14 SIYSHCFNQDRSLLAITYDT-DCYVYKVSAAKQPQLVAVLPDHDKTVTAVDISVH-GRIV 71
SI H +N+DR+ +A++ + + ++Y + +L VL HD V +D + + RIV
Sbjct: 13 SITCHAWNKDRTQIALSPNNHEIHIYSREGSDW-KLADVLNQHDLRVMGIDWAKNTNRIV 71
Query: 72 TCSQDRNAIVWEPLSNGTYKPTLVLLRINRAATCVSWASSGYKFAVGSSARIIAVCYYEQ 131
+C+ DRNA VW +G +KP LVLLRINRAATCV W+ + KFAVGS AR+I+VCY+E
Sbjct: 72 SCAADRNAYVWTQGDDGKWKPALVLLRINRAATCVKWSPAENKFAVGSGARLISVCYFES 131
Query: 132 ENDWWVSKHIKKPIKSTINALSWHSNCVLLACGGTDGYARVFSGFIKGLDTKEQVAGSPW 191
ENDWWVSKHIKKPI+ST+ +L WH N VLL G TD RVFS FIK D +E +PW
Sbjct: 132 ENDWWVSKHIKKPIRSTVTSLDWHPNNVLLLAGSTDYKVRVFSAFIK--DIEEPPTPTPW 189
Query: 192 GEKFPFGSLVREWYQ-----GAWIHDIKWRSSIDKVAFVTHDGSLNITDYTDDIKSVDNP 246
G + P G L+ E+ G WI+ + + S +KV +V HD ++I D T+ +
Sbjct: 190 GNRKPLGQLMAEFRNSQTSGGGWINSVSFSSDGNKVCWVGHDSCVSIADATNGNTVIRCR 249
Query: 247 EG-LPFITLCWINDHEILAAGFSNHPVLYSEGSRGWEVSKILDSPVKSAGKLVASTGDD- 304
G LPF++ W++ ++ AG+S P+LYS + + GKLV S D
Sbjct: 250 TGYLPFLSCEWVSPTSVVVAGYSCVPLLYS---------------LTADGKLVLSGKLDK 294
Query: 305 -EEEGAFGMSALRKFKELDLKGKVSQQEE--KSTHVNSITELAAYKESNNNVTQVSSVGL 361
+++ + G++A+R F+ +D + + S H N+IT + Y + T+VS+ G+
Sbjct: 295 SQKKESSGITAMRIFQSMDRNMRTENTDTVVDSIHQNAITSVRLYAGDKASATKVSTSGV 354
Query: 362 DGKLVIYKL 370
DG+LVI+ +
Sbjct: 355 DGQLVIWNV 363
>CE24672 [Z] KOG1523 Actin-related protein Arp2/3 complex subunit
ARPC1/p41-ARC
Length = 368
Score = 243 bits (620), Expect = 3e-64
Identities = 142/364 (39%), Positives = 211/364 (57%), Gaps = 23/364 (6%)
Query: 13 GSIYSHCFNQDRSLLAITYDT-DCYVYKVSAAKQPQLVAVLPDHDKTVTAVDISVH-GRI 70
G I H +N+DR+ +A++ + D ++++ Q + L +HD VT +D RI
Sbjct: 15 GPITCHAWNKDRTQIAVSASSNDIHIFEWRNGDW-QSIHTLSEHDLPVTGLDWGTKTNRI 73
Query: 71 VTCSQDRNAIVWEPLSNGTYKPTLVLLRINRAATCVSWASSGYKFAVGSSARIIAVCYYE 130
V+CSQD+NA VW +KP LVL+R NRAAT V W+ KFAVGS A++++VCYYE
Sbjct: 74 VSCSQDKNAFVWT-FDKNVWKPELVLVRFNRAATYVKWSPLENKFAVGSGAKLVSVCYYE 132
Query: 131 QENDWWVSKHIKKPIKSTINALSWHSNCVLLACGGTDGYARVFSGFIKGLDTKEQVAGSP 190
+ENDWWVSK IKKPI+ST+ L WHSN VLLA G D RVFS ++K +D E+ + +P
Sbjct: 133 KENDWWVSKQIKKPIRSTVTCLDWHSNNVLLAVGSCDFKCRVFSAYVKEVD--EKPSPNP 190
Query: 191 WGEKFPFGSLVREWYQGAWIHDIKWRSSIDKVAFVTHDGSLNITDYTDDIKSVDN--PEG 248
WG+K PFG L+ E+ G W+H + + S ++AFV+HD S++ D T D + V N
Sbjct: 191 WGQKMPFGQLMSEYSVGGWVHRVAFSPSGCRLAFVSHDSSVSFVDSTVDSQKVQNLLTIH 250
Query: 249 LPFITLCWINDHEILAAGFSNHPVLYSEGSRGWEVSKILDSPVKSAGKLVASTGDDEEEG 308
LPF T+ WI ++ ++ AG PVL+ + ++ V SA K +ST +
Sbjct: 251 LPFTTVEWITENSVVTAGHDCSPVLFVVSQD--VLKEVCKLDVPSAAK--SSTVN----- 301
Query: 309 AFGMSALRKFKELDLKGKVSQQEE--KSTHVNSITELAAYKESNNNVTQVSSVGLDGKLV 366
SAL+ FK +D + K+ H N IT++ + + NV + ++ G DG +
Sbjct: 302 ----SALQLFKNIDRNNAAEKINVALKTLHQNRITQILPHSGTVGNVVKFTTCGTDGIVA 357
Query: 367 IYKL 370
++ L
Sbjct: 358 LWDL 361
>Hs5454078 [Z] KOG1523 Actin-related protein Arp2/3 complex subunit
ARPC1/p41-ARC
Length = 370
Score = 243 bits (619), Expect = 4e-64
Identities = 138/364 (37%), Positives = 220/364 (59%), Gaps = 29/364 (7%)
Query: 15 IYSHCFNQDRSLLAITYDT-DCYVYKVSAAKQPQLVAVLPDHDKTVTAVDISVHG-RIVT 72
I H +N+DR+ +A++ + + ++YK + ++ + L +H+ +T +D + RIVT
Sbjct: 11 ITCHAWNRDRTQIALSPNNHEVHIYKKNGSQWVK-AHELKEHNGHITGIDWAPKSDRIVT 69
Query: 73 CSQDRNAIVWEPLSNGTYKPTLVLLRINRAATCVSWASSGYKFAVGSSARIIAVCYYEQE 132
C DRNA VW +G +KPTLV+LRINRAAT V W+ KFAVGS AR+I+VCY+E E
Sbjct: 70 CGADRNAYVWSQ-KDGVWKPTLVILRINRAATFVKWSPLENKFAVGSGARLISVCYFEAE 128
Query: 133 NDWWVSKHIKKPIKSTINALSWHSNCVLLACGGTDGYARVFSGFIKGLDTKEQVAGSPWG 192
NDWWVSKHIKKPI+ST+ +L WH N VLLA G D RVFS +IK +D K+ A +PWG
Sbjct: 129 NDWWVSKHIKKPIRSTVLSLDWHPNNVLLAAGSCDFKCRVFSAYIKEVDEKK--ASTPWG 186
Query: 193 EKFPFGSLVREW---YQGAWIHDIKWRSSIDKVAFVTHDGSLNITDYTDDIK-SVDNPEG 248
K PFG L+ E+ G W+H + + +S ++A+V+HD ++++ D + ++ S E
Sbjct: 187 SKMPFGQLMSEFGGSGTGGWVHGVSFSASGSRLAWVSHDSTVSVADASKSVQVSTLKTEF 246
Query: 249 LPFITLCWINDHEILAAGFSNHPVLYSEGSRG--WEVSKILDSPVKSAGKLVASTGDDEE 306
LP +++ +++++ ++AAG P+L+ RG VSK LD P +S +
Sbjct: 247 LPLLSVSFVSENSVVAAGHDCCPMLFIYDDRGCLTFVSK-LDIPKQSIQR---------- 295
Query: 307 EGAFGMSALRKFKELDLKGKVSQQEE--KSTHVNSITELAAYKESNNNVTQVSSVGLDGK 364
MSA+ +F+ +D + + ++ H NSIT+++ Y+ + + + G+DG
Sbjct: 296 ----NMSAMERFRNMDKRATTEDRNTALETLHQNSITQVSIYEVDKQDCRKFCTTGIDGA 351
Query: 365 LVIY 368
+ I+
Sbjct: 352 MTIW 355
>Hs5031601 [Z] KOG1523 Actin-related protein Arp2/3 complex subunit
ARPC1/p41-ARC
Length = 372
Score = 236 bits (601), Expect = 5e-62
Identities = 143/366 (39%), Positives = 213/366 (58%), Gaps = 31/366 (8%)
Query: 15 IYSHCFNQDRSLLAITYDT-DCYVYKVSAAKQPQLVAVLPDHDKTVTAVDISVHG-RIVT 72
I H +N+DR+ +AI + + ++Y+ S AK + V L +H+ VT +D + RIVT
Sbjct: 11 ISCHAWNKDRTQIAICPNNHEVHIYEKSGAKWTK-VHELKEHNGQVTGIDWAPESNRIVT 69
Query: 73 CSQDRNAIVWEPLSNGTYKPTLVLLRINRAATCVSWASSGYKFAVGSSARIIAVCYYEQE 132
C DRNA VW L T+KPTLV+LRINRAA CV WA + KFAVGS +R+I++CY+EQE
Sbjct: 70 CGTDRNAYVWT-LKGRTWKPTLVILRINRAARCVRWAPNENKFAVGSGSRVISICYFEQE 128
Query: 133 NDWWVSKHIKKPIKSTINALSWHSNCVLLACGGTDGYARVFSGFIKGLDTKEQVAGSPWG 192
NDWWV KHIKKPI+ST+ +L WH N VLLA G D R+FS +IK + +E+ A +PWG
Sbjct: 129 NDWWVCKHIKKPIRSTVLSLDWHPNNVLLAAGSCDFKCRIFSAYIK--EVEERPAPTPWG 186
Query: 193 EKFPFGSLVREWYQG-AWIHDIKWRSSIDKVAFVTHDGSLNITDYTDDIKSVDN--PEGL 249
K PFG L+ E W+H + + +S +VA+V+HD ++ + D D +V E L
Sbjct: 187 SKMPFGELMFESSSSCGWVHGVCFSASGSRVAWVSHDSTVCLAD-ADKKMAVATLASETL 245
Query: 250 PFITLCWINDHEILAAGFSNHPVLYSEGSRGWEVS--KILDSPVKSAGKLVASTGDDEEE 307
P + L +I D+ ++AAG PVL++ + +S LD P +S+ +
Sbjct: 246 PLLALTFITDNSLVAAGHDCFPVLFTYDAAAGMLSFGGRLDVPKQSSQR----------- 294
Query: 308 GAFGMSALRKFKELDLK-----GKVSQQEEKSTHVNSITELAAYKESNNNVTQVSSVGLD 362
G++A +F+ LD K G + S H NS+++++ +Q + G+D
Sbjct: 295 ---GLTARERFQNLDKKASSEGGTAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMD 351
Query: 363 GKLVIY 368
G + I+
Sbjct: 352 GGMSIW 357
>At2g31300 [Z] KOG1523 Actin-related protein Arp2/3 complex subunit
ARPC1/p41-ARC
Length = 378
Score = 201 bits (511), Expect = 1e-51
Identities = 126/365 (34%), Positives = 196/365 (53%), Gaps = 17/365 (4%)
Query: 14 SIYSHCFNQDRSLLAIT-YDTDCYVYKVSAAKQPQLVAVLPDHDKTVTAVD-ISVHGRIV 71
SI H ++ D S++A+ +T+ ++YK + + + VL HD+ V+ +D S +IV
Sbjct: 12 SITCHAWSPDLSMVALCPNNTEVHIYKSLSQDHWERLHVLQKHDQIVSGIDWSSKSNKIV 71
Query: 72 TCSQDRNAIVWEPLSNGTYKPTLVLLRINRAATCVSWASSGYKFAVGSSARIIAVCYYEQ 131
T S DRN+ VW L + PTLV+LR+NRAA CV W+ KFAVGS A+ + +CYYEQ
Sbjct: 72 TVSHDRNSYVWS-LEGAEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQ 130
Query: 132 ENDWWVSKHIKKPIKSTINALSWHSNCVLLACGGTDGYARVFSGFIKGLDTKEQVAGSPW 191
EN+WWVSK I+K +S++ +++WH N VLLA TDG RVFS FIKG+DTK+ AGSP
Sbjct: 131 ENNWWVSKLIRKRHESSVTSVAWHPNNVLLATTSTDGKCRVFSTFIKGVDTKDSKAGSPA 190
Query: 192 GEKFPFGSLVREWYQGAWIHDIKWRSSIDKVAFVTHDGSLNITDYTDDIKSVDNP--EGL 249
KF +++ +W +KW S + +A+V H + D + L
Sbjct: 191 ETKFG-EQILQLDLSYSWAFGVKWSPSGNTLAYVGHSSMIYFVDDVGPSPLAQSVAFRDL 249
Query: 250 PFITLCWINDHEILAAGFSNHPVLYSEGSRGWEVSKILDSPVKSAGKLVASTGDDEEEGA 309
P + +I++ ++ G+ ++P++++ G + S ++ G+ A++
Sbjct: 250 PLRDVLFISEKMVIGVGYDSNPMVFAADDTG------IWSFIRYIGEKKAASSGSSYSSQ 303
Query: 310 FGMSALRKFKELDLKGKVSQQEEKS---THVNSITELAAY-KESNNNVTQVSSVGLDGKL 365
F A KF K + S H NSIT + K + V + S+ GLDGK+
Sbjct: 304 FS-EAFGKFYGSQSKSTTANDASDSRGGVHDNSITSIVPLGKGGSPKVMRFSTSGLDGKI 362
Query: 366 VIYKL 370
I+ L
Sbjct: 363 AIWDL 367
>At2g30910 [Z] KOG1523 Actin-related protein Arp2/3 complex subunit
ARPC1/p41-ARC
Length = 378
Score = 200 bits (508), Expect = 3e-51
Identities = 124/365 (33%), Positives = 197/365 (53%), Gaps = 17/365 (4%)
Query: 14 SIYSHCFNQDRSLLAIT-YDTDCYVYKVSAAKQPQLVAVLPDHDKTVTAVD-ISVHGRIV 71
SI H ++ D S++A+ +T+ ++YK + + + VL HD+ V+ +D S +IV
Sbjct: 12 SITCHAWSPDLSMVALCPNNTEVHIYKSLSQDHWERLHVLQKHDQIVSGIDWSSKSNKIV 71
Query: 72 TCSQDRNAIVWEPLSNGTYKPTLVLLRINRAATCVSWASSGYKFAVGSSARIIAVCYYEQ 131
T S DRN+ VW L + PTLV+LR+NRAA CV W+ KFAVGS A+ + +CYYEQ
Sbjct: 72 TVSHDRNSYVWS-LEGAEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQ 130
Query: 132 ENDWWVSKHIKKPIKSTINALSWHSNCVLLACGGTDGYARVFSGFIKGLDTKEQVAGSPW 191
EN+WWVSK I+K +S++ +++WH N VLLA TDG RVFS FIKG+DTK+ AGSP
Sbjct: 131 ENNWWVSKLIRKRHESSVTSVAWHPNNVLLATTSTDGKCRVFSTFIKGVDTKDSKAGSPA 190
Query: 192 GEKFPFGSLVREWYQGAWIHDIKWRSSIDKVAFVTHDGSLNITDYTDDIKSVDNP--EGL 249
KF +++ +W +KW S + +A+V H + D + L
Sbjct: 191 ETKFG-EQILQLDLSYSWAFGVKWSPSGNTLAYVGHSSMIYFVDDVGPSPLAQSVAFRDL 249
Query: 250 PFITLCWINDHEILAAGFSNHPVLYSEGSRGWEVSKILDSPVKSAGKLVASTGDDEEEGA 309
P + +I++ ++ G+ ++P++++ G + S ++ G+ A++ +
Sbjct: 250 PLRDVLFISEKMVIGVGYDSNPMVFASDDTG------IWSFIRYIGEKKAASSNSSYSSQ 303
Query: 310 FGMSALRKFKELDLKGKVSQQEEKS---THVNSITELAAY-KESNNNVTQVSSVGLDGKL 365
F A KF K + +S H N I + + K + V + S+ GLDGK+
Sbjct: 304 FS-EAFGKFYGSQSKSTTANDASESRGGVHDNCINSIVSLSKAGSPKVMRFSTSGLDGKV 362
Query: 366 VIYKL 370
I+ L
Sbjct: 363 AIWDL 367
>Hs20484677 [Z] KOG1523 Actin-related protein Arp2/3 complex subunit
ARPC1/p41-ARC
Length = 293
Score = 122 bits (305), Expect = 1e-27
Identities = 103/363 (28%), Positives = 155/363 (42%), Gaps = 105/363 (28%)
Query: 15 IYSHCFNQDRSLLAITYDT-DCYVYKVSAAKQPQLVAVLPDHDKTVTAVDISVHG-RIVT 72
I +N+DR+ +A++ D + ++YK +++ + L +H+ +T + + RIVT
Sbjct: 12 ITCRAWNRDRTQIALSPDNQEAHIYKKHGSQRVK-ARELSEHNGHITGIHWAPKSDRIVT 70
Query: 73 CSQDRNAIVWEPLSNGTYKPTLVLLRINRAATCVSWASSGYKFAVGSSARIIAVCYYEQE 132
C D NA VW +G +KPTLV+LRINRAAT V W+ KFAVG
Sbjct: 71 CGVDCNAYVWSQ-KDGVWKPTLVILRINRAATFVKWSPLENKFAVG-------------- 115
Query: 133 NDWWVSKHIKKPIKSTINALSWHSNCVLLACGGTDGYARVFSGFIKGLDTKEQVAGSPWG 192
I +L WH N VLLA G D RVFS +IK +D E+ A PWG
Sbjct: 116 ----------------ILSLDWHPNNVLLAAGSCDFKCRVFSAYIKEVD--EKPASMPWG 157
Query: 193 EKFPFGSLVREW---YQGAWIHDIKWRSSIDKVAFVTHDGSLNITDYTDDIKSVDNPEGL 249
K PFG L+ E+ G W+H
Sbjct: 158 TKMPFGQLMSEFGGSGTGGWVH-------------------------------------- 179
Query: 250 PFITLCWINDHEILAAGFSNHPVLYSEGSRG--WEVSKILDSPVKSAGKLVASTGDDEEE 307
+ ++AAG +P+L++ RG VSK LD P +S +
Sbjct: 180 ---------GNSVVAAGHDCYPMLFNYDDRGCLTFVSK-LDIPKQSIQR----------- 218
Query: 308 GAFGMSALRKFKELDLKGKVSQQEE--KSTHVNSITELAAYKESNNNVTQVSSVGLDGKL 365
MSA+ F+ +D + + + H NSIT ++ Y+ + + G+DG +
Sbjct: 219 ---NMSAIEHFRNMDTRATIEDHNMALERLHQNSITHVSIYEVDKQGCRKFCTTGIDGAM 275
Query: 366 VIY 368
I+
Sbjct: 276 TIW 278
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.317 0.133 0.407
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,918,754
Number of Sequences: 60738
Number of extensions: 984207
Number of successful extensions: 2810
Number of sequences better than 1.0e-05: 9
Number of HSP's better than 0.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 2757
Number of HSP's gapped (non-prelim): 10
length of query: 370
length of database: 30,389,216
effective HSP length: 108
effective length of query: 262
effective length of database: 23,829,512
effective search space: 6243332144
effective search space used: 6243332144
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)