ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactVI2779 good K KOG2549 Transcription Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA)
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactVI2779 980423 981970 516
(516 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YGL112c [K] KOG2549 Transcription initiation factor TFIID subuni... 606 e-173
SPCC16C4.18c [K] KOG2549 Transcription initiation factor TFIID s... 315 1e-85
At1g04950 [K] KOG2549 Transcription initiation factor TFIID subu... 252 8e-67
Hs5032147 [K] KOG2549 Transcription initiation factor TFIID subu... 198 1e-50
Hs21536355 [K] KOG2549 Transcription initiation factor TFIID sub... 198 1e-50
ECU10g1120 [K] KOG2549 Transcription initiation factor TFIID sub... 196 5e-50
7293771 [K] KOG2549 Transcription initiation factor TFIID subuni... 189 7e-48
Hs21536357 [K] KOG2549 Transcription initiation factor TFIID sub... 180 4e-45
At1g54360 [K] KOG2549 Transcription initiation factor TFIID subu... 131 2e-30
7296734 [K] KOG2549 Transcription initiation factor TFIID subuni... 74 7e-13
Hs5453844 [K] KOG2549 Transcription initiation factor TFIID subu... 60 6e-09
CE27602 [K] KOG2549 Transcription initiation factor TFIID subuni... 59 2e-08
CE27222 [K] KOG2549 Transcription initiation factor TFIID subuni... 52 3e-06
>YGL112c [K] KOG2549 Transcription initiation factor TFIID subunit TAF6
(also component of histone acetyltransferase SAGA)
Length = 516
Score = 606 bits (1563), Expect = e-173
Identities = 320/517 (61%), Positives = 388/517 (74%), Gaps = 20/517 (3%)
Query: 11 YTIWSPHDTVKDVADSLGISNTNDDVLRSLAMDVEYRILEIVEQAVKFKRHSKRSTLTTS 70
YTIWSP DTVKDVA+SLG+ N NDDVL++LAMDVEYRILEI+EQAVKFKRHSKR LTT
Sbjct: 8 YTIWSPQDTVKDVAESLGLENINDDVLKALAMDVEYRILEIIEQAVKFKRHSKRDVLTTD 67
Query: 71 DVAKALRVLNVEPLYGFEEGSAKNEPVKFNKLEGANGQTLYYLDDEEIDFEKLINTPLPE 130
DV+KALRVLNVEPLYG+ +GS N+ V F+K+ + GQ++YYLD+EE+DF++LIN PLP+
Sbjct: 68 DVSKALRVLNVEPLYGYYDGSEVNKAVSFSKVNTSGGQSVYYLDEEEVDFDRLINEPLPQ 127
Query: 131 VPRLPTFTAHWLAVEGIQPAIPQNPNINELRLSQVPLQRGAIVSPLNETSVQTSLQTNVN 190
VPRLPTFT HWLAVEG+QPAI QNPN+N++R+SQ P RGAIV+ LN+ S+QT + T+
Sbjct: 128 VPRLPTFTTHWLAVEGVQPAIIQNPNLNDIRVSQPPFIRGAIVTALNDNSLQTPV-TSTT 186
Query: 191 EERQATANGPIS--TQVKPGAASEAKPLVKHVLSKELQIYFEKVASALTSKEE-DINSQR 247
T G + VKPG +E KPLVKHVLSKELQIYF KV S LT+K + D +Q
Sbjct: 187 ASASVTDTGASQHLSNVKPGQNTEVKPLVKHVLSKELQIYFNKVISTLTAKSQADEAAQH 246
Query: 248 MRAAALTSLKSDTGLHQLVPYFIQFIAEQIXXXXXXXXXXXXXXXXIYSLLSNQSVFLDP 307
M+ AALTSL++D+GLHQLVPYFIQFIAEQI IYSLLSN S+FLDP
Sbjct: 247 MKQAALTSLRTDSGLHQLVPYFIQFIAEQITQNLSDLQLLTTILEMIYSLLSNTSIFLDP 306
Query: 308 YIHSLMPSILTLLLAKRLGGNGSKNSSDDKIVDQQNKKEFLEKTNAVRDFASSLLDHVLK 367
YIHSLMPSILTLLLAK+LGG+ +S Q EFLE+TNA+RDFA+SLLD+VLK
Sbjct: 307 YIHSLMPSILTLLLAKKLGGSPKDDS-------PQEIHEFLERTNALRDFAASLLDYVLK 359
Query: 368 KFPKVHKSLKPRVTRTLLKTFLDINRSFGTYYGCVRGVSVLGNETIRFFLGNLQNWSKLV 427
KFP+ +KSLKPRVTRTLLKTFLDINR FGTYYGC++GVSVL E+IRFFLGNL NW++LV
Sbjct: 360 KFPQAYKSLKPRVTRTLLKTFLDINRVFGTYYGCLKGVSVLEGESIRFFLGNLNNWARLV 419
Query: 428 FEE-------YDRSQSEDSKSGK-NLTDLEIKLLSTVIVSTLENLKSDLPSSYNPSGD-F 478
F E + ++DS + T E ++L ++S L LK DLP Y G+
Sbjct: 420 FNESGITLDNIEEHLNDDSNPTRTKFTKEETQILVDTVISALLVLKKDLPDLYEGKGEKV 479
Query: 479 SEEDKTRLRERCGITVGNVILERDDAKTLYDAIFFGE 515
++EDK +L ERCG+T+G IL+RDDAK L AIFFGE
Sbjct: 480 TDEDKEKLLERCGVTIGFHILKRDDAKELISAIFFGE 516
>SPCC16C4.18c [K] KOG2549 Transcription initiation factor TFIID subunit TAF6
(also component of histone acetyltransferase SAGA)
Length = 452
Score = 315 bits (807), Expect = 1e-85
Identities = 191/498 (38%), Positives = 284/498 (56%), Gaps = 56/498 (11%)
Query: 12 TIWSPHDTVKDVADSLGISNTNDDVLRSLAMDVEYRILEIVEQAVKFKRHSKRSTLTTSD 71
T+W+ +++KDVA+ LGI N D+ ++AMD+EYRI ++V++A KF HSKR+ LT++D
Sbjct: 4 TVWNI-ESIKDVAEMLGIGNLADEPAAAIAMDLEYRIHQVVQEATKFMVHSKRTVLTSAD 62
Query: 72 VAKALRVLNVEPLYGFEEGSAKNEPVKFNKLE-GANGQTLYYLDDEEIDFEKLINTPLPE 130
++ ALR LNVEPLYGF + P++F++ GA +LYYLDDEE+DFEK+IN PLP+
Sbjct: 63 ISSALRTLNVEPLYGFNN----SRPLEFHEAAVGAGQNSLYYLDDEEVDFEKIINAPLPK 118
Query: 131 VPRLPTFTAHWLAVEGIQPAIPQNPNINELRLSQVPLQRGAIVSPLNETSVQTSLQTNVN 190
VPR +++AHWLA+EG+QPAIPQNP ++ + + + + V P T+ + +
Sbjct: 119 VPRNISYSAHWLAIEGVQPAIPQNPTPSDHTVGEWASKGTSGVMPGASTAAKEA------ 172
Query: 191 EERQATANGPISTQVKPGAASEAKPLVKHVLSKELQIYFEKVASALTSKEEDINSQRMRA 250
NG S E KPLV+HVLSKELQ+YFE++ SAL D + +R
Sbjct: 173 ------RNGVTSMD-----NVEIKPLVRHVLSKELQLYFERITSALL----DETNVELRD 217
Query: 251 AALTSLKSDTGLHQLVPYFIQFIAEQIXXXXXXXXXXXXXXXXIYSLLSNQSVFLDPYIH 310
AAL+SL+ D GLHQL+PYFI F+++ + ++LL N ++F++PY+
Sbjct: 218 AALSSLRDDPGLHQLLPYFIMFLSDSVTRNLGNLVVLTTLMHMAWALLDNPNLFVEPYVQ 277
Query: 311 SLMPSILTLLLAKRLGGNGSKNSSDDKIVDQQNKKEFLEKTNAVRDFASSLLDHVLKKFP 370
LMPSILT L+AKRLG D N + + A+RD A+ LL V +F
Sbjct: 278 QLMPSILTCLVAKRLGS------------DPNNHEHY-----ALRDLAAFLLGIVCDRFG 320
Query: 371 KVHKSLKPRVTRTLLKTFLDINRSFGTYYGCVRGVSVLGNETIR-FFLGNLQNWSKLVFE 429
V+ +LKPRVTRT LK FLD + + T+YG ++G+ +G E IR + N++ + LV +
Sbjct: 321 NVYYTLKPRVTRTALKAFLDNTKPYSTHYGAIKGLKTMGKEAIRVLVVPNIKVYEVLVRK 380
Query: 430 EYDRSQSEDSKSGKNLTDLEIKLLSTVIVSTLENLKSDLPSSYNPSGDFSEEDKTRLRER 489
++ E+ D L + L N ++ P N SG L +
Sbjct: 381 TLEKGNEEEIYEANKCMDALYDALLLLRDDQLPNQRTLPP---NASG--------LLEKN 429
Query: 490 CGITVGNVILERDDAKTL 507
G + I++ +D L
Sbjct: 430 VGSLMAEKIMKENDTSLL 447
>At1g04950 [K] KOG2549 Transcription initiation factor TFIID subunit TAF6
(also component of histone acetyltransferase SAGA)
Length = 549
Score = 252 bits (644), Expect = 8e-67
Identities = 148/424 (34%), Positives = 233/424 (54%), Gaps = 63/424 (14%)
Query: 16 PHDTVKDVADSLGISNTNDDVLRSLAMDVEYRILEIVEQAVKFKRHSKRSTLTTSDVAKA 75
P +TV+ +A S+GI+N + LA DVEYR+ EI+++A+K RHSKR+TLT SDV A
Sbjct: 5 PKETVEVIAQSIGITNLLPEAALMLAPDVEYRVREIMQEAIKCMRHSKRTTLTASDVDGA 64
Query: 76 LRVLNVEPLYGFEEGSAKNEPVKFNKLEGANGQTLYYLDDEEIDFEKLINTPLPEVPRLP 135
L + NVEP+YGF G P +F K G + L+Y DD E+DF+ +I PLP+ P
Sbjct: 65 LNLRNVEPIYGFASGG----PFRFRKAIG--HRDLFYTDDREVDFKDVIEAPLPKAPLDT 118
Query: 136 TFTAHWLAVEGIQPAIPQNPNINELRLSQVPLQRGAIVSPLNETSVQTSLQTNVNEERQA 195
HWLA+EG+QPAIP+N PL+ ++ +T ++E+
Sbjct: 119 EIVCHWLAIEGVQPAIPEN----------APLE-----------VIRAPAETKIHEQ--- 154
Query: 196 TANGPISTQVKPGAASEAKPLVKHVLSKELQIYFEKVASALTSKEEDINSQRMRAAALTS 255
K G + + VKHVLS+ELQ+YF+K+A SK ++ + AL S
Sbjct: 155 ----------KDGPLIDVRLPVKHVLSRELQLYFQKIAELAMSK----SNPPLYKEALVS 200
Query: 256 LKSDTGLHQLVPYFIQFIAEQIXXXXXXXXXXXXXXXXIYSLLSNQSVFLDPYIHSLMPS 315
L SD+GLH LVPYF FIA+++ + SLL N + ++PY+H LMPS
Sbjct: 201 LASDSGLHPLVPYFTNFIADEVSNGLNDFRLLFNLMHIVRSLLQNPHIHIEPYLHQLMPS 260
Query: 316 ILTLLLAKRLGGNGSKNSSDDKIVDQQNKKEFLEKTNAVRDFASSLLDHVLKKFPKVHKS 375
++T L++++LG + N + +RDFA++L+ + K++ V+ +
Sbjct: 261 VVTCLVSRKLGNRFADNHWE------------------LRDFAANLVSLICKRYGTVYIT 302
Query: 376 LKPRVTRTLLKTFLDINRSFGTYYGCVRGVSVLGNETIR-FFLGNLQNWSKLVFEEYDRS 434
L+ R+TRTL+ LD ++ +YG ++G++ LG+ +R L NL+ + L+ E +
Sbjct: 303 LQSRLTRTLVNALLDPKKALTQHYGAIQGLAALGHTVVRLLILSNLEPYLSLLEPELNAE 362
Query: 435 QSED 438
+ ++
Sbjct: 363 KQKN 366
>Hs5032147 [K] KOG2549 Transcription initiation factor TFIID subunit TAF6
(also component of histone acetyltransferase SAGA)
Length = 677
Score = 198 bits (504), Expect = 1e-50
Identities = 125/407 (30%), Positives = 211/407 (51%), Gaps = 40/407 (9%)
Query: 16 PHDTVKDVADSLGISNTNDDVLRSLAMDVEYRILEIVEQAVKFKRHSKRSTLTTSDVAKA 75
P +++K VA+S+GI+ ++ + L +V YRI EI + A+KF KR LTTSD+ A
Sbjct: 15 PSESMKVVAESMGIAQIQEETCQLLTDEVSYRIKEIAQDALKFMHMGKRQKLTTSDIDYA 74
Query: 76 LRVLNVEPLYGFEEGSAKNEPVKFNKLEGANGQTLYYLDDEEIDFEKLINTPLPEVPRLP 135
L++ NVEPLYGF E + F G G+ LY+ +++E+D +INTPLP VP
Sbjct: 75 LKLKNVEPLYGFH----AQEFIPFRFASG-GGRELYFYEEKEVDLSDIINTPLPRVPLDV 129
Query: 136 TFTAHWLAVEGIQPAIPQNPNINELRLSQVPLQRGAIVSPLNETSVQTSLQTNVNEERQ- 194
AHWL++EG QPAIP+NP + Q+ PL + + Q
Sbjct: 130 CLKAHWLSIEGCQPAIPENP-----PPAPKEQQKAEATEPLKSAKPGQEEDGPLKGKGQG 184
Query: 195 -ATANGPISTQVKP----GAASEAKPLVKHVLSKELQIYFEKVASALTSKEEDINSQRMR 249
TA+G + P GA KP H LS E Q+Y++++ A + + R
Sbjct: 185 ATTADGKGKEKKAPPLLEGAPLRLKPRSIHELSVEQQLYYKEITEACVG-----SCEAKR 239
Query: 250 AAALTSLKSDTGLHQLVPYFIQFIAE--QIXXXXXXXXXXXXXXXXIYSLLSNQSVFLDP 307
A AL S+ +D GL+Q++P F FI+E ++ + +L+ N +++L+
Sbjct: 240 AEALQSIATDPGLYQMLPRFSTFISEGVRVNVVQNNLALLIYLMRMVKALMDNPTLYLEK 299
Query: 308 YIHSLMPSILTLLLAKRLGGNGSKNSSDDKIVDQQNKKEFLEKTNAVRDFASSLLDHVLK 367
Y+H L+P+++T +++++L + ++ A+RDFA+ L+ + K
Sbjct: 300 YVHELIPAVMTCIVSRQL-----------------CLRPDVDNHWALRDFAARLVAQICK 342
Query: 368 KFPKVHKSLKPRVTRTLLKTFLDINRSFGTYYGCVRGVSVLGNETIR 414
F +++ R+T+T K+++D + T YG + G++ LG++ I+
Sbjct: 343 HFSTTTNNIQSRITKTFTKSWVDEKTPWTTRYGSIAGLAELGHDVIK 389
>Hs21536355 [K] KOG2549 Transcription initiation factor TFIID subunit TAF6
(also component of histone acetyltransferase SAGA)
Length = 667
Score = 198 bits (504), Expect = 1e-50
Identities = 125/407 (30%), Positives = 211/407 (51%), Gaps = 40/407 (9%)
Query: 16 PHDTVKDVADSLGISNTNDDVLRSLAMDVEYRILEIVEQAVKFKRHSKRSTLTTSDVAKA 75
P +++K VA+S+GI+ ++ + L +V YRI EI + A+KF KR LTTSD+ A
Sbjct: 15 PSESMKVVAESMGIAQIQEETCQLLTDEVSYRIKEIAQDALKFMHMGKRQKLTTSDIDYA 74
Query: 76 LRVLNVEPLYGFEEGSAKNEPVKFNKLEGANGQTLYYLDDEEIDFEKLINTPLPEVPRLP 135
L++ NVEPLYGF E + F G G+ LY+ +++E+D +INTPLP VP
Sbjct: 75 LKLKNVEPLYGFH----AQEFIPFRFASG-GGRELYFYEEKEVDLSDIINTPLPRVPLDV 129
Query: 136 TFTAHWLAVEGIQPAIPQNPNINELRLSQVPLQRGAIVSPLNETSVQTSLQTNVNEERQ- 194
AHWL++EG QPAIP+NP + Q+ PL + + Q
Sbjct: 130 CLKAHWLSIEGCQPAIPENP-----PPAPKEQQKAEATEPLKSAKPGQEEDGPLKGKGQG 184
Query: 195 -ATANGPISTQVKP----GAASEAKPLVKHVLSKELQIYFEKVASALTSKEEDINSQRMR 249
TA+G + P GA KP H LS E Q+Y++++ A + + R
Sbjct: 185 ATTADGKGKEKKAPPLLEGAPLRLKPRSIHELSVEQQLYYKEITEACVG-----SCEAKR 239
Query: 250 AAALTSLKSDTGLHQLVPYFIQFIAE--QIXXXXXXXXXXXXXXXXIYSLLSNQSVFLDP 307
A AL S+ +D GL+Q++P F FI+E ++ + +L+ N +++L+
Sbjct: 240 AEALQSIATDPGLYQMLPRFSTFISEGVRVNVVQNNLALLIYLMRMVKALMDNPTLYLEK 299
Query: 308 YIHSLMPSILTLLLAKRLGGNGSKNSSDDKIVDQQNKKEFLEKTNAVRDFASSLLDHVLK 367
Y+H L+P+++T +++++L + ++ A+RDFA+ L+ + K
Sbjct: 300 YVHELIPAVMTCIVSRQL-----------------CLRPDVDNHWALRDFAARLVAQICK 342
Query: 368 KFPKVHKSLKPRVTRTLLKTFLDINRSFGTYYGCVRGVSVLGNETIR 414
F +++ R+T+T K+++D + T YG + G++ LG++ I+
Sbjct: 343 HFSTTTNNIQSRITKTFTKSWVDEKTPWTTRYGSIAGLAELGHDVIK 389
>ECU10g1120 [K] KOG2549 Transcription initiation factor TFIID subunit TAF6
(also component of histone acetyltransferase SAGA)
Length = 356
Score = 196 bits (499), Expect = 5e-50
Identities = 127/396 (32%), Positives = 196/396 (49%), Gaps = 78/396 (19%)
Query: 18 DTVKDVADSLGISNTNDDVLRSLAMDVEYRILEIVEQAVKFKRHSKRSTLTTSDVAKALR 77
+T+K A S GISN +DD LR L+ D+EYRI E+ ++ KF SKR+ L+ D+ AL
Sbjct: 6 ETLKSFAQSKGISNIDDDALRVLSQDLEYRIKEVCQEGSKFMVGSKRTKLSIDDINYALT 65
Query: 78 VLNVEPLYGFEEGSAKNEPVKFNKLEGANGQTLYYLDDEEIDFEKLINTPLPEVPRLPTF 137
NV+PL+G++ E + F L +YY+ DEEID E+ ++ PLP+VP +
Sbjct: 66 SRNVDPLFGYD----PQESLVFRGLP----SNVYYVPDEEIDLEEYLDRPLPKVPLRVSI 117
Query: 138 TAHWLAVEGIQPAIPQNPNINELRLSQVPLQRGAIVSPLNETSVQTSLQTNVNEERQATA 197
+HWLA+EG+QP IP NP + E +++ + +L T E
Sbjct: 118 QSHWLAIEGVQPQIPYNPILLEKPVAK-----------------KDTLGTYQEE------ 154
Query: 198 NGPISTQVKPGAASEAKPLVKHVLSKELQIYFEKVASALTSKEEDINSQRMRAAALTSLK 257
+E K KH+L+KEL +YF+KV A+ S E+ A+ L
Sbjct: 155 -------------AELKSQNKHMLTKELGMYFDKVIQAMESDEQ---------TAMECLH 192
Query: 258 SDTGLHQLVPYFIQFIAEQIXXXXXXXXXXXXXXXXIYSLLSNQSVFLDPYIHSLMPSIL 317
+++G+ QLVPYF+ EQI SLL N+ +F+DPY+H ++PS++
Sbjct: 193 NESGIQQLVPYFVHHFNEQIVKNIKNKEKLMTVVMVYSSLLKNKYIFVDPYLHQILPSLI 252
Query: 318 TLLLAKRLGGNGSKNSSDDKIVDQQNKKEFLEKTNAVRDFASSLLDHVLKKFPKVHKSLK 377
T ++ KN DD VR A+ ++ +V F +K+L
Sbjct: 253 TCVI--------GKNVDDD-----------------VRKVAADVVKYVFSNFSSSYKTLA 287
Query: 378 PRVTRTLLKTFLDINRSFGTYYGCVRGVSVLGNETI 413
PR+ TL K +LD ++ T YG + +S+L +
Sbjct: 288 PRIINTLSKAWLDREKTESTQYGALFCLSILSKHVV 323
>7293771 [K] KOG2549 Transcription initiation factor TFIID subunit TAF6
(also component of histone acetyltransferase SAGA)
Length = 592
Score = 189 bits (481), Expect = 7e-48
Identities = 119/402 (29%), Positives = 201/402 (49%), Gaps = 40/402 (9%)
Query: 18 DTVKDVADSLGISNTNDDVLRSLAMDVEYRILEIVEQAVKFKRHSKRSTLTTSDVAKALR 77
+++K +A+S+G+ + +DD + LA DV ++ IV+ A KF H+KR L+ D+ +L+
Sbjct: 10 ESMKVIAESIGVGSLSDDAAKELAEDVSIKLKRIVQDAAKFMNHAKRQKLSVRDIDMSLK 69
Query: 78 VLNVEPLYGFEEGSAKNEPVKFNKLEGANGQTLYYLDDEEIDFEKLINTPLPEVPRLPTF 137
V NVEP YGF + + F G G+ L++ +D+EID ++ +T ++P T
Sbjct: 70 VRNVEPQYGF----VAKDFIPFRFASG-GGRELHFTEDKEIDLGEITSTNSVKIPLDLTL 124
Query: 138 TAHWLAVEGIQPAIPQNPNINELRLSQVPLQRGAIVSPLNETSVQTSLQTNVNEERQATA 197
+HW VEG+QP +P+NP PL + + + L+ + + +N++
Sbjct: 125 RSHWFVVEGVQPTVPENP---------PPLSKDSQL--LDSVNPVIKMDQGLNKDAAGKP 173
Query: 198 NGPISTQVKPGAASEAKPLVKHVLSKELQIYFEKVASALTSKEEDINSQRMRAAALTSLK 257
++K K L H LS E Q+Y++++ A +E R AL SL
Sbjct: 174 TTGKIHKLKNVETIHVKQLATHELSVEQQLYYKEITEACVGSDEP-----RRGEALQSLG 228
Query: 258 SDTGLHQLVPYFIQFIAE--QIXXXXXXXXXXXXXXXXIYSLLSNQSVFLDPYIHSLMPS 315
SD GLH+++P FIAE ++ + +LL N S+FL+ Y+H L+PS
Sbjct: 229 SDPGLHEMLPRMCTFIAEGVKVNVVQNNLALLIYLMRMVRALLDNPSLFLEKYLHELIPS 288
Query: 316 ILTLLLAKRLGGNGSKNSSDDKIVDQQNKKEFLEKTNAVRDFASSLLDHVLKKFPKVHKS 375
++T +++K+L + L+ A+RDFAS L+ + K F + +
Sbjct: 289 VMTCIVSKQL-----------------CMRPELDNHWALRDFASRLMAQICKNFNTLTNN 331
Query: 376 LKPRVTRTLLKTFLDINRSFGTYYGCVRGVSVLGNETIRFFL 417
L+ RVTR K + + YG + G+S LG E I+ F+
Sbjct: 332 LQTRVTRIFSKALQNDKTHLSSLYGSIAGLSELGGEVIKVFI 373
>Hs21536357 [K] KOG2549 Transcription initiation factor TFIID subunit TAF6
(also component of histone acetyltransferase SAGA)
Length = 667
Score = 180 bits (457), Expect = 4e-45
Identities = 120/407 (29%), Positives = 204/407 (49%), Gaps = 50/407 (12%)
Query: 16 PHDTVKDVADSLGISNTNDDVLRSLAMDVEYRILEIVEQAVKFKRHSKRSTLTTSDVAKA 75
P +++K VA+S+GI+ ++ + L E A+KF KR LTTSD+ A
Sbjct: 15 PSESMKVVAESMGIAQIQEETCQLLTD----------EDALKFMHMGKRQKLTTSDIDYA 64
Query: 76 LRVLNVEPLYGFEEGSAKNEPVKFNKLEGANGQTLYYLDDEEIDFEKLINTPLPEVPRLP 135
L++ NVEPLYGF E + F G G+ LY+ +++E+D +INTPLP VP
Sbjct: 65 LKLKNVEPLYGFHA----QEFIPFRFASGG-GRELYFYEEKEVDLSDIINTPLPRVPLDV 119
Query: 136 TFTAHWLAVEGIQPAIPQNPNINELRLSQVPLQRGAIVSPLNETSVQTSLQTNVNEERQ- 194
AHWL++EG QPAIP+NP + Q+ PL + + Q
Sbjct: 120 CLKAHWLSIEGCQPAIPENP-----PPAPKEQQKAEATEPLKSAKPGQEEDGPLKGKGQG 174
Query: 195 -ATANGPISTQVKP----GAASEAKPLVKHVLSKELQIYFEKVASALTSKEEDINSQRMR 249
TA+G + P GA KP H LS E Q+Y++++ A + + R
Sbjct: 175 ATTADGKGKEKKAPPLLEGAPLRLKPRSIHELSVEQQLYYKEITEACVG-----SCEAKR 229
Query: 250 AAALTSLKSDTGLHQLVPYFIQFIAE--QIXXXXXXXXXXXXXXXXIYSLLSNQSVFLDP 307
A AL S+ +D GL+Q++P F FI+E ++ + +L+ N +++L+
Sbjct: 230 AEALQSIATDPGLYQMLPRFSTFISEGVRVNVVQNNLALLIYLMRMVKALMDNPTLYLEK 289
Query: 308 YIHSLMPSILTLLLAKRLGGNGSKNSSDDKIVDQQNKKEFLEKTNAVRDFASSLLDHVLK 367
Y+H L+P+++T +++++L + ++ A+RDFA+ L+ + K
Sbjct: 290 YVHELIPAVMTCIVSRQL-----------------CLRPDVDNHWALRDFAARLVAQICK 332
Query: 368 KFPKVHKSLKPRVTRTLLKTFLDINRSFGTYYGCVRGVSVLGNETIR 414
F +++ R+T+T K+++D + T YG + G++ LG++ I+
Sbjct: 333 HFSTTTNNIQSRITKTFTKSWVDEKTPWTTRYGSIAGLAELGHDVIK 379
>At1g54360 [K] KOG2549 Transcription initiation factor TFIID subunit TAF6
(also component of histone acetyltransferase SAGA)
Length = 475
Score = 131 bits (330), Expect = 2e-30
Identities = 88/226 (38%), Positives = 119/226 (51%), Gaps = 26/226 (11%)
Query: 218 KHVLSKELQIYFEKVAS-ALTSKEEDINSQRMRAAALTSLKSDTGLHQLVPYFIQFIAEQ 276
+ VLSK+LQIYF+KV ALT + Q AL SL+ D GLH LVP+F FIAE+
Sbjct: 125 RQVLSKDLQIYFDKVTEWALTQSGSTLFRQ-----ALASLEIDPGLHPLVPFFTSFIAEE 179
Query: 277 IXXXXXXXXXXXXXXXXIYSLLSNQSVFLDPYIHSLMPSILTLLLAKRLGGNGSKNSSDD 336
I SLL N V ++PY+H LMPSI+T L+AKRLG S N D
Sbjct: 180 IVKNMDNYPILLALMRLARSLLHNPHVHIEPYLHQLMPSIITCLIAKRLGRRSSDNHWD- 238
Query: 337 KIVDQQNKKEFLEKTNAVRDFASSLLDHVLKKFPKVHKSLKPRVTRTLLKTFLDINRSFG 396
+R+F +S + K+F V+ +L PRVTR+LL TFLD ++
Sbjct: 239 -----------------LRNFTASTVASTCKRFGHVYHNLLPRVTRSLLHTFLDPTKALP 281
Query: 397 TYYGCVRGVSVLGNETIRFF-LGNLQNWSKLVFEEYD-RSQSEDSK 440
+YG ++G+ LG +RF L NL + L+ E Q E++K
Sbjct: 282 QHYGAIQGMVALGLNMVRFLVLPNLGPYLLLLLPEMGLEKQKEEAK 327
Score = 83.6 bits (205), Expect = 7e-16
Identities = 40/115 (34%), Positives = 68/115 (58%), Gaps = 9/115 (7%)
Query: 18 DTVKDVADSLGISNTNDDVLRSLAMDVEYRILEIVEQAVKFKRHSKRSTLTTSDVAKALR 77
++++ +A S+G+S + DV +LA DVEYR+ E++++A+K RH++R+TL DV AL
Sbjct: 5 ESIEVIAQSIGLSTLSPDVSAALAPDVEYRVREVMQEAIKCMRHARRTTLMAHDVDSALH 64
Query: 78 VLNVEPLYGFEEGSAKNEPVKFNKLEGANGQTLYYLDDEEIDFEKLINTPLPEVP 132
N+EP G + K P + LY+ DD++++ + +I PLP P
Sbjct: 65 FRNLEPTSGSKSMRFKRAP---------ENRDLYFFDDKDVELKNVIEAPLPNAP 110
>7296734 [K] KOG2549 Transcription initiation factor TFIID subunit TAF6
(also component of histone acetyltransferase SAGA)
Length = 570
Score = 73.6 bits (179), Expect = 7e-13
Identities = 70/289 (24%), Positives = 129/289 (44%), Gaps = 35/289 (12%)
Query: 214 KPLVKHVLSKELQIYFEKVASALTSKEEDINSQRMRAAALTSLKSDTGLHQLVPYFIQFI 273
KP ++ LS E Q +FE V A D+ S+R+ AL ++ +D L +L+P +FI
Sbjct: 164 KPSKRYPLSMEQQNFFELVTEACVG---DLESRRV--LALKAISTDPSLEELLPRLTKFI 218
Query: 274 AEQIXXXXXXXXX--XXXXXXXIYSLLSNQSVFLDPYIHSLMPSILTLLLAKRLGGNGSK 331
A+ + + +LL NQ L Y+H L+P++L+ LLAK++ S
Sbjct: 219 ADAVAINVAQQNLPLLLYLMRMVRALLGNQRFSLLQYLHLLLPAVLSCLLAKQV--CASP 276
Query: 332 NSSDDKIVDQQNKKEFLEKTNAVRDFASSLLDHVLKKFPKVHKSLKPRVTRTLLKTFLD- 390
NS D A+R+++ +++ H++++F + PRV +L +
Sbjct: 277 NSEDHW---------------ALREYSGNIMAHIVRQFDAADNGILPRVIGQVLIIVYNK 321
Query: 391 --INRSFGTYYGCVRGVSVLGNETIR-FFLGNLQNWSK-----LVFEEYDRSQSEDSKSG 442
+ + T +G V G+ +GN +R L L+ S+ + S S D ++
Sbjct: 322 ALLKKPLTTVFGAVIGLGKMGNHAVRACILPQLKYLSEHIDSHMAASNDSPSSSVDRQAV 381
Query: 443 KNLTDLEIKLLSTVIVSTLE--NLKSDLPSSYNPSGDFSEEDKTRLRER 489
K + +K+ S V++ + +L + Y G + T +R +
Sbjct: 382 KYIRHRLMKMCSPVLMGIHQPPDLPEEFMERYGSLGTLMSDGVTVMRTK 430
>Hs5453844 [K] KOG2549 Transcription initiation factor TFIID subunit TAF6
(also component of histone acetyltransferase SAGA)
Length = 622
Score = 60.5 bits (145), Expect = 6e-09
Identities = 101/433 (23%), Positives = 165/433 (37%), Gaps = 96/433 (22%)
Query: 16 PHDTVKDVADSLGISNTNDDVLRSLAMDVEYRILEIVEQAVKFKRHSKRSTLTTSDVAKA 75
P ++V+ +A+S G+ +D+V LA DV YR+ E + + +F +H+KR LT D +A
Sbjct: 13 PRESVRLMAESTGLE-LSDEVAALLAEDVCYRLREATQNSSQFMKHTKRRKLTVEDFNRA 71
Query: 76 LRVLNVEPLYGFEEGSAKNEPVKFNKLEGANGQTLYYLDDEEIDFEKL-INTPLPEVPRL 134
LR +VE + G+ GS + P++ A LY+ +D E++ +L + T +P+
Sbjct: 72 LRWSSVEAVCGY--GSQEALPMR-----PAREGELYFPEDREVNLVELALATNIPKGCAE 124
Query: 135 PTFTAHWLAVEGIQPAIPQNPNINELRLSQVPLQRGAIVSPLNETSVQ-TSLQTNVNEER 193
H ++G PQ VP ++ L + Q T + +
Sbjct: 125 TAVRVHVSYLDGKGNLAPQ---------GSVPSAVSSLTDDLLKYYHQVTRAVLGDDPQL 175
Query: 194 QATANGPISTQVKPGAASEAKPLVKHVLSKELQIYFEKVASALTSKEEDINSQRMRAAAL 253
A + T K GA L YF V S + S D+
Sbjct: 176 MKVALQDLQTNSKIGA---------------LLPYFVYVVSGVKSVSHDLEQ-------- 212
Query: 254 TSLKSDTGLHQLVPYFIQFIAEQIXXXXXXXXXXXXXXXXIYSLLSNQSVFLDPYIHSLM 313
LH+L+ Q+ SL N + L PY+ L+
Sbjct: 213 --------LHRLL---------QVAR----------------SLFRNPHLCLGPYVRCLV 239
Query: 314 PSILTLLLAKRLGGNGSKNSSDDKIVDQQNKKEFLEKTNAVRDFASSLLDHVLKKFPKVH 373
S+L +L S N +D +RD A+ LL H+ +
Sbjct: 240 GSVLYCVLEPLA---ASINPLNDHW--------------TLRDGAALLLSHIFWTHGDLV 282
Query: 374 KSLKPRVTRTLLKTFLDINRSFGTYYGCVRGVSVLGNETI-RFFLGNLQN-WSKL--VFE 429
L + +L K D R +YG V G+ LG + + R +L W+ L V +
Sbjct: 283 SGLYQHILLSLQKILADPVRPLCCHYGAVVGLHALGWKAVERVLYPHLSTYWTNLQAVLD 342
Query: 430 EYDRSQSEDSKSG 442
+Y S ++ G
Sbjct: 343 DYSVSNAQVKADG 355
>CE27602 [K] KOG2549 Transcription initiation factor TFIID subunit TAF6
(also component of histone acetyltransferase SAGA)
Length = 814
Score = 58.9 bits (141), Expect = 2e-08
Identities = 68/300 (22%), Positives = 122/300 (40%), Gaps = 65/300 (21%)
Query: 140 HWLAVEGIQPAIPQNPNINELRLSQVPLQRGAIVSPLNETSVQTSLQTNVNEERQATANG 199
HWL V+GIQP +P+N V P + V+ Q +E ++A G
Sbjct: 212 HWLVVDGIQPCLPEN------------------VIP---SEVKRRFQEQQHETQRAHGFG 250
Query: 200 PISTQVKPGAASEAKP---LVKHVLSKELQIYFEKVASALTSKEEDINSQRMRAAALTSL 256
PG E P + S E Q+ + ++ LTS S R L ++
Sbjct: 251 ------VPGIKREPMPEKRMSTQTFSMEHQVLYSEITKILTS-----GSSLQRQKVLETI 299
Query: 257 KSDTGLHQLVPYFIQFIAE--QIXXXXXXXXXXXXXXXXIYSLLSNQSVFLDPYIHSLMP 314
++DTG+ L F+ IAE ++ +SL+ N ++ L+ Y++ L+P
Sbjct: 300 ETDTGIQFLAGRFVILIAEGTRLHIGTRNIRGLANLLKLTWSLMKNPNIRLEKYLYVLVP 359
Query: 315 SILTLLLAKR---------------------LGGNGSKNSSDDKIVDQQNKKEFLEKTNA 353
S+++ +++K LG + ++DD+ + LE
Sbjct: 360 SLISCVVSKNMVPILDVSRVGLKAKPTTVTPLGATPPELTADDR----ERIIRDLEFEFK 415
Query: 354 VRDFASSLLDHVLKKFPKVHKSLKPRVTRTLLKTFLDINRSFGTYYGCVRGVSVLGNETI 413
+R+ + LL + ++ + +L R+ +T L+ L N+ YG + + GN TI
Sbjct: 416 LREASGKLLAELSSQYQNL--NLNVRIIQT-LRGVLSGNQDPAAIYGVLCTLFAFGNLTI 472
>CE27222 [K] KOG2549 Transcription initiation factor TFIID subunit TAF6
(also component of histone acetyltransferase SAGA)
Length = 470
Score = 51.6 bits (122), Expect = 3e-06
Identities = 76/393 (19%), Positives = 155/393 (39%), Gaps = 49/393 (12%)
Query: 24 ADSLGISNTNDDVLRSLAMDVEYRILEIVEQAVKFKRHSKRSTLTTSDVAKALRV----- 78
A+ LGI++ N + L ++ EIV + K+ + S R + +DV A+R
Sbjct: 32 AEMLGITSLNTEAAELLEFLSREKLKEIVRLSAKWTQKSARRRMAVADVEHAIRSTRQCG 91
Query: 79 -LNVEPLYGFEEGSAKNEPVKFNKLEGANGQTLYYLDDEEIDFEKLINTPLPEVPRLPTF 137
LN+ + G + +P++ + G + ++D +K ++PR
Sbjct: 92 GLNISSVDTLNLGIQQLQPIQGT----STGIYSFLKSSADVDVDKEDTETFIKIPRDLRV 147
Query: 138 TAHWLAVEG--IQPAIPQNPNINELRLSQVPLQRGAIVSPLNETSVQTSLQTNVNEERQA 195
++ L EG +Q N + ++ + + + P T +S +++ R A
Sbjct: 148 ISYPLVNEGQPVQSEYTVNVDEDDGNFFEKIVPEVMTMIPEKNTP-SSSTTSSLQMFRDA 206
Query: 196 TANGPISTQVKPGAASEAKPLVKHVLSKELQIYFEKVASALTSKEEDINSQRMRAAALTS 255
I +V KP +L+ E QI+ + + + +++ + R AL +
Sbjct: 207 VKTAKIDQKV------GLKPSTIEILTVEQQIFMKDIITVCMGQDD-----KKRHEALYT 255
Query: 256 LKSDTGLHQLVPYFIQFIAEQIXXXXXX--XXXXXXXXXXIYSLLSNQSVFLDPYIHSLM 313
L++D GL +P+ + I + I + SL N++ + +H ++
Sbjct: 256 LETDAGLQVFLPHLTERICKSISANISQRCLSLIIYAGRVLRSLSHNKACDMTVTLHHVL 315
Query: 314 PSILTLLLAKRLGGNGSKNSSDDKIVDQQNKKEFLEKTNAVRDFASSLLDHVLKKFPKVH 373
P++L+ + + + + + A+RDF++ L +++ +V
Sbjct: 316 PALLSCCVGRNM-----------------CLRPETDNHWALRDFSAKTLVGLVR--DQVD 356
Query: 374 KSLKPRVTRTLL----KTFLDINRSFGTYYGCV 402
K R R L + F D SF YG V
Sbjct: 357 KHDAGRTARRLFDFSHRIFRDTGSSFSMIYGTV 389
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.315 0.133 0.367
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,046,125
Number of Sequences: 60738
Number of extensions: 1166255
Number of successful extensions: 3175
Number of sequences better than 1.0e-05: 13
Number of HSP's better than 0.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 3113
Number of HSP's gapped (non-prelim): 17
length of query: 516
length of database: 30,389,216
effective HSP length: 111
effective length of query: 405
effective length of database: 23,647,298
effective search space: 9577155690
effective search space used: 9577155690
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)