ORF      STATUS       Function Best COG  Functional category                                          Pathways and functional systems
r_klactVI2862.1   suspect: LH  W     KOG3544   Extracellular structures                                       Collagens (type IV and type XIII), and related proteins

BLASTP 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= r_klactVI2862.1 1011092  1011283 64   
         (64 letters)

Database: KOG eukaryal database 04/03 
           60,738 sequences; 30,389,216 total letters

Searching..................................................done

Color Key for Alignment Scores:   


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Hs18201923 [W] KOG3544 Collagens (type IV and type XIII) and rel...    28   3.0  
YOL126c [C] KOG1494 NAD-dependent malate dehydrogenase                 27   6.8  

>Hs18201923 [W] KOG3544 Collagens (type IV and type XIII) and related proteins
          Length = 3063

 Score = 27.7 bits (60), Expect = 3.0
 Identities = 13/41 (31%), Positives = 22/41 (52%)

Query: 12  LAGIKRNTGLTPKIDHISDITVREYSTKYLNLGESVYDYTV 52
           LA IK+   + PK    S++T   + T +   GE+V+ Y +
Sbjct: 624 LAAIKKKAYVPPKDLSFSEVTSYGFKTNWSPAGENVFSYHI 664


>YOL126c [C] KOG1494 NAD-dependent malate dehydrogenase
          Length = 423

 Score = 26.6 bits (57), Expect = 6.8
 Identities = 12/31 (38%), Positives = 19/31 (60%)

Query: 3   IDAVLISTCLAGIKRNTGLTPKIDHISDITV 33
           +D V  ST L  I   +GLTP+++ + D+ V
Sbjct: 227 LDIVRASTFLREINIESGLTPRVNSMPDVPV 257


  Database: KOG eukaryal database 04/03
    Posted date:  Apr 14, 2003  1:07 PM
  Number of letters in database: 30,389,216
  Number of sequences in database:  60,738
  
Lambda     K      H
   0.317    0.133    0.369 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,509,377
Number of Sequences: 60738
Number of extensions: 102827
Number of successful extensions: 262
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 260
Number of HSP's gapped (non-prelim): 2
length of query: 64
length of database: 30,389,216
effective HSP length: 40
effective length of query: 24
effective length of database: 27,959,696
effective search space: 671032704
effective search space used: 671032704
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)