ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactVI2905 good L KOG3176 Replication, recombination and repair Predicted alpha-helical protein, potentially involved in replication/repair
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactVI2905 1024978 1025853 292
(292 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YDR489w [L] KOG3176 Predicted alpha-helical protein potentially ... 267 2e-71
SPBP4H10.21c [L] KOG3176 Predicted alpha-helical protein potenti... 100 4e-21
Hs14150122 [L] KOG3176 Predicted alpha-helical protein potential... 64 3e-10
At5g49010 [L] KOG3176 Predicted alpha-helical protein potentiall... 57 2e-08
>YDR489w [L] KOG3176 Predicted alpha-helical protein potentially involved in
replication/repair
Length = 294
Score = 267 bits (682), Expect = 2e-71
Identities = 148/298 (49%), Positives = 194/298 (64%), Gaps = 10/298 (3%)
Query: 1 MSIDIDDILAELDRDTTAVEQNASSYPDQSDRTQGNDVSQIRPADKAVDPVAPTQFNKID 60
M I+IDDILAELD++TTAV+ ++ S T D + I + ++ +
Sbjct: 1 MDINIDDILAELDKETTAVD--STKITQGSSSTTHRDANTIVGSSLDLNDKTQIYVSPQQ 58
Query: 61 DYQKLITHWKNERMSPELLPYPHHLMXXXXXXXXXXXXXXXXXSMGYLE------DNQEL 114
D+ L+ WKNER SPELLPYPH LM SMG+L+ N +
Sbjct: 59 DFSDLMKSWKNERCSPELLPYPHQLMKRLLNRISMQSQLIENISMGFLDMQNASNANPPM 118
Query: 115 TVDSKLPLLCMEAELERLKFLVRSFIRCRLSKIDKYSIYLRQQSELPNNAGLSRLDLLMS 174
+SKLPLLCME ELERLKF++RS+IRCRLSKIDK+S+YLRQ +E N+ L L L+S
Sbjct: 119 PNESKLPLLCMETELERLKFVIRSYIRCRLSKIDKFSLYLRQLNEDENS--LISLTDLLS 176
Query: 175 KEEVKYHMKHSDILLKLFNNAVLKHLPEELQAVNDTEGSISMIDEPDWNKTVFILVCGGV 234
K+E+KYH HS I LKL N+++LK++PEELQA+NDTEGS++MIDEPDWNK VFI V G
Sbjct: 177 KDEIKYHDTHSLIWLKLVNDSILKYMPEELQAINDTEGSVNMIDEPDWNKFVFIHVNGPP 236
Query: 235 VDESGIDSKLTTDDDGKHCYSVIIEDLNEEIYLLIGAVYVIRYSVIRDLMTEGRVVLI 292
+ D L ++ GK CY+V I DL EE+ L IG++YV+RY VIRDL+ + +V LI
Sbjct: 237 DGKWNEDPLLQENEFGKPCYTVTIPDLKEEVELTIGSIYVMRYEVIRDLLRDDKVALI 294
>SPBP4H10.21c [L] KOG3176 Predicted alpha-helical protein potentially involved in
replication/repair
Length = 214
Score = 99.8 bits (247), Expect = 4e-21
Identities = 70/252 (27%), Positives = 121/252 (47%), Gaps = 48/252 (19%)
Query: 45 DKAVDPVAPTQFNKIDDYQKLITHWKNERMSPELLPYPHHLMXXXXXXXXXXXXXXXXXS 104
D ++P + +DY+ L T W NERM+P+LLP+ ++
Sbjct: 7 DLLIEPTTEVE----NDYEDLCTQWVNERMAPDLLPFAEEIVSRVLDRIEAQ-------- 54
Query: 105 MGYLEDNQELTVDSKLPL----LCMEAELERLKFLVRSFIRCRLSKIDKYSIYLRQQSEL 160
+ +L + + + M+ ELER+KF++RS++R R++KIDKY+ Y++
Sbjct: 55 ----RETLQLAIGTSSATSYRSVLMQTELERVKFVLRSYMRTRINKIDKYAQYIQSH--- 107
Query: 161 PNNAGLSRLDLLMSKEEVKYHMKHSDILLKLFNNAVLKHLPEELQAVNDTEGSISMIDEP 220
PN L L +S E +Y ++H I+ + + ++ L+ +P ++ ++D G++SM+ P
Sbjct: 108 PN------LLLYLSSPERQYLLRHQQIVHRHYMDSFLREVPAKMNKLDDKVGNLSMVASP 161
Query: 221 DWNKTVFILVCGGVVDESGIDSKLTTDDDGKHCYSVIIEDLNEEIYLLIGAVYVIRYSVI 280
D + VF +V V + + NE I L G V ++RYSVI
Sbjct: 162 DMDTAVFCVVNESVEENFRVSE-------------------NEYITLDKGDVLILRYSVI 202
Query: 281 RDLMTEGRVVLI 292
D + G V LI
Sbjct: 203 SDYLRLGVVSLI 214
>Hs14150122 [L] KOG3176 Predicted alpha-helical protein potentially involved in
replication/repair
Length = 223
Score = 63.9 bits (154), Expect = 3e-10
Identities = 55/230 (23%), Positives = 100/230 (42%), Gaps = 34/230 (14%)
Query: 63 QKLITHWKNERMSPELLPYPHHLMXXXXXXXXXXXXXXXXXSMGYLEDNQELTVDSKLPL 122
++L W NE+ +PELL ++ + ++E+N L +
Sbjct: 28 ERLEQAWMNEKFAPELLESKPEIVECVME------------QLEHMEENLRRAKREDLKV 75
Query: 123 LCMEAELERLKFLVRSFIRCRLSKIDKYSIYLRQQSELPNNAGLSRLDLLMSKEEVKYHM 182
+ E+ER+++++ S++RCRL KI+K+ ++ ++ + S L S EE+ +
Sbjct: 76 SIHQMEMERIRYVLSSYLRCRLMKIEKFFPHVLEKEKTRPEGEPSSL----SPEELAFAR 131
Query: 183 KHSDILLKLFNNAVLKHLPEELQAVNDTEGSISMIDEPDWNKTVFILVCGGVVDESGIDS 242
+ N LKH+P LQ V+ + +PD + VF+ V E +
Sbjct: 132 EFMANTESYLKNVALKHMPPNLQKVD----LFRAVPKPDLDSYVFLR-----VRERQENI 182
Query: 243 KLTTDDDGKHCYSVIIEDLNEEIYLLIGAVYVIRYSVIRDLMTEGRVVLI 292
+ D D + Y + +E G+ ++IRY I L+ G V LI
Sbjct: 183 LVEPDTDEQRDYVIDLEK---------GSQHLIRYKTIAPLVASGAVQLI 223
>At5g49010 [L] KOG3176 Predicted alpha-helical protein potentially involved in
replication/repair
Length = 254
Score = 57.4 bits (137), Expect = 2e-08
Identities = 49/176 (27%), Positives = 83/176 (46%), Gaps = 20/176 (11%)
Query: 61 DYQKLITHWKNERMSPELLPYPHHLMXXXXXXXXXXXXXXXXXSMGYLEDNQELTVDSKL 120
D + L W+NE+ +PE+L Y L+ +ED E +D L
Sbjct: 21 DVELLKRAWRNEKAAPEILQYEGALVDRAKEQIELVEET--------IEDYVENGIDP-L 71
Query: 121 PLLCMEAELERLKFLVRSFIRCRLSKIDKYSIYLRQQSELPNNAGLSRLDLLMSKEEVKY 180
+ + +L+R +FL+RS++R RL KI+K+ + N + +S++E +
Sbjct: 72 VVSLYQMDLDRAQFLLRSYLRVRLLKIEKFMFH---------NLNSEEAERRLSEQEKVF 122
Query: 181 HMKHSDILLKLFNNAVLKHLPEELQAVNDTEGSISMIDEPDWNKTVFILVCGGVVD 236
+ +D L K F VL LPE Q+V + IS +D+ + VF+LV +V+
Sbjct: 123 ATRCADDLAKHFEETVLLKLPENYQSVL-KQSLISEVDDM-VARVVFVLVMTTLVN 176
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.318 0.137 0.389
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,738,378
Number of Sequences: 60738
Number of extensions: 697908
Number of successful extensions: 1877
Number of sequences better than 1.0e-05: 4
Number of HSP's better than 0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1867
Number of HSP's gapped (non-prelim): 5
length of query: 292
length of database: 30,389,216
effective HSP length: 105
effective length of query: 187
effective length of database: 24,011,726
effective search space: 4490192762
effective search space used: 4490192762
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)