ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactVI2960 suspect: Pn K KOG2406 Transcription MADS box transcription factor
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactVI2960 1046616 1045060 -519
(519 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
At5g65490 [K] KOG2406 MADS box transcription factor 62 2e-09
SPAC1002.10c [K] KOG2406 MADS box transcription factor 60 8e-09
Hs6005784 [K] KOG2406 MADS box transcription factor 52 2e-06
>At5g65490 [K] KOG2406 MADS box transcription factor
Length = 643
Score = 62.0 bits (149), Expect = 2e-09
Identities = 64/234 (27%), Positives = 106/234 (44%), Gaps = 17/234 (7%)
Query: 33 ETTMMFGIFYLDELIKDQDQIILKSQLSELSSMLEPWNEAFPWNGYNGVSLEIRESLSGE 92
+ T+ F +F L L+S E+ + P+ + W + SL I S S
Sbjct: 19 DETVFFSLFPDSSL----SSAALQSLHLEIIDFVSPFTSPYIWQ-HEPFSLSIALSSSCA 73
Query: 93 Y------YIFGSLQVGDNARDEECLVLSILLNFSRHAGPCTFIKVCDTDGEFILMEANEI 146
++ G L+ GDN DE V +L S A P I+V DTDGEF+L+EA
Sbjct: 74 CTNTAIPHLHGKLKYGDNLEDEWFAVF-LLFRISA-AFPSNSIRVWDTDGEFLLIEAAFH 131
Query: 147 IPAELEFPVSNNRIWITMGKISYIPITFYYDRGLSKYEALSFLKKDSSKVSYLPDLESNI 206
+P L S NR++I G + +P + D L +L FL + ++ S D +
Sbjct: 132 LPRWLNPETSLNRVFIRGGDLHIVPRSRLPDPSL--VASLRFLIERGNE-SRASDSVQSA 188
Query: 207 RKNFLKVFPYSTLNKLKCCKTIITDSKVAEILKYNPKLVSLALTHFMTSSFETI 260
KN + +P + + + S VA+++++ P L+SLA+ F +++
Sbjct: 189 LKNRISDYPERAWRNMHRVRVRVPVS-VAQVIRHEPFLISLAVEGFYDRDMDSM 241
>SPAC1002.10c [K] KOG2406 MADS box transcription factor
Length = 590
Score = 60.1 bits (144), Expect = 8e-09
Identities = 101/493 (20%), Positives = 200/493 (40%), Gaps = 66/493 (13%)
Query: 42 YLDELIKDQDQIILKSQLSELSSMLEPWNEAFPWNGYNGVSLEIRESLSGEYYIFGSLQV 101
Y E K+ + + L+EL + + + W ++L+ R G+ I G
Sbjct: 27 YFSEKEKESTEASINMFLAELERLQLEYGKEHIWQNEE-LNLQ-RVEYQGKDCILGITNF 84
Query: 102 GDNARDEECLVLSILLNFSRHAGPCTFIKVCDTDGEFILMEANEIIPAELEFPVSNNRIW 161
GD DE +V LL + A F+++ D DGEF+L+EA +P ++ S+ R+W
Sbjct: 85 GDCIDDEWYIVW--LLREASKAVKSAFVRIIDEDGEFLLIEAALSLPKWIDEDNSDYRVW 142
Query: 162 ITMGKISYIPITFYYDRGLSKYEALS-----FLKKDSSKVSYLPDLESNIRKNFLKVFPY 216
I G++ + + + +++ L+ F S + ++ +I + LK FP
Sbjct: 143 IHNGEVIILRPEDEFLKKMNRCPPLTREQAIFQISSGSNLYTSREVNDSISQR-LKKFPK 201
Query: 217 STLNKLKCCKTIITDSKVAEILKYNPKLVSLALTHFMTSSFETIPTEKHTED-------G 269
+ KL+ T+ K+ +L+ N L+S A+ F + P +++ D
Sbjct: 202 AANVKLRAICTV--PRKIVHVLQKNKNLISSAVNAF----YYRDPIDENYCDRMSKFNQN 255
Query: 270 HMIDVIAPQSHLALVKKFVDLTSTDQELN-----NKLDFYSDTLGSVL---VDSIHHMID 321
++ + L + + T + + + LD+ LG L + +++ +
Sbjct: 256 DLVTTTITFTPLLYAQLYQQRCKTFRPFHLPSDVHSLDYERAILGMKLSCGFEILYNSKE 315
Query: 322 N--DILTLNSNNRLKPKALLSCLQEHKIITEDFQIANVKWDILNPDDDVELNATSLDTLK 379
N ++ +++P +++ +I +D NV NPD+ EL L+
Sbjct: 316 NVEKRTEIDEYLQIQPLPTDEDIKKIPLIEDDTSFMNV-----NPDELEEL-------LE 363
Query: 380 TNLLSFLNDESDLKGIINDNSDERN-----------------VNGDAHVDNEQESFLEKX 422
L SF +D D + DN+D N +N + + ++++F E
Sbjct: 364 KKLNSFCDDFGDDERSGFDNTDHDNTLVGEEEMVPGNHGGKSINEEITKNKQKQNFNESD 423
Query: 423 XXXXXXXXXXXXXXLKNGLNLADDYIANLRGSYMDSDADKDQIADSELDTLSELHQSLQD 482
+ + D Y ++ S D+D D D +ADS+ + +Q + +
Sbjct: 424 LKNMASRIETFINDEASNNHREDFY--GVKNS--DTDTDSDSLADSDDEIFLNRNQGIDE 479
Query: 483 VSAECSPIADLVK 495
V + + DL+K
Sbjct: 480 VEFDETKFYDLLK 492
>Hs6005784 [K] KOG2406 MADS box transcription factor
Length = 644
Score = 52.4 bits (124), Expect = 2e-06
Identities = 51/235 (21%), Positives = 107/235 (44%), Gaps = 25/235 (10%)
Query: 33 ETTMMFGIFYLDELIKDQDQI--ILKSQLSELSSMLEPWNEAFPWNGYNGVSLEIRESLS 90
E T+ + +F + + +D D+ IL+ + + + P + W +L+ +
Sbjct: 11 EDTVEYCLFLIPDESRDSDKHKEILQKYIERIITRFAPMLVPYIWQN-QPFNLKYKPGKG 69
Query: 91 G-EYYIFGSLQVGDNARDEECLVLSILLNFSRHAGPCTFIKVCDTDGEFILMEANEIIPA 149
G ++FG + GDN DE +V ++ ++ P ++ D DGEF+L+EA + +P
Sbjct: 70 GVPAHMFGVTKFGDNIEDEWFIVY-VIKQITKEF-PELVARIEDNDGEFLLIEAADFLPK 127
Query: 150 ELEFPVSNNRIWITMGKISYIPITFYYDRGLSKY---------EALSFLKKDSSKVSYLP 200
L+ S NR++ G++ IP G + +AL+ + S K+
Sbjct: 128 WLDPENSTNRVFFCHGELCIIPAP--RKSGAESWLPTTPPTIPQALNIITAHSEKILASE 185
Query: 201 DLESNIRKNFLKVFP---YSTLNKLKCCKTIITDSKVAEILKYNPKLVSLALTHF 252
+ + + + ++ +P ++L++ C + + +LK P+LV+ A+ F
Sbjct: 186 SIRAAVNRR-IRGYPEKIQASLHRAHC----FLPAGIVAVLKQRPRLVAAAVQAF 235
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.315 0.134 0.383
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,349,450
Number of Sequences: 60738
Number of extensions: 1303647
Number of successful extensions: 3692
Number of sequences better than 1.0e-05: 3
Number of HSP's better than 0.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 3685
Number of HSP's gapped (non-prelim): 7
length of query: 519
length of database: 30,389,216
effective HSP length: 111
effective length of query: 408
effective length of database: 23,647,298
effective search space: 9648097584
effective search space used: 9648097584
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)