ORF      STATUS       Function Best COG  Functional category                                          Pathways and functional systems
r_klactVI3006   suspect: LH   S     KOG4415  Function unknown                                               Uncharacterized conserved protein

BLASTP 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= r_klactVI3006 1059788 1057530 -753 
         (753 letters)

Database: KOG eukaryal database 04/03 
           60,738 sequences; 30,389,216 total letters

Searching..................................................done

Color Key for Alignment Scores:   


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

7292701_2 [S] KOG4415 Uncharacterized conserved protein                52   3e-06

>7292701_2 [S] KOG4415 Uncharacterized conserved protein
          Length = 1643

 Score = 52.0 bits (123), Expect = 3e-06
 Identities = 43/177 (24%), Positives = 81/177 (45%), Gaps = 5/177 (2%)

Query: 571  VKQWQNLRSLRPKYLFEFNKVSEKTTLAGFANEELIRNDIESKKRRLAERIESKKKKHSE 630
            +K+ +    L+ K   E  K  EK        EE +R     +K +  ER+E  K+K  E
Sbjct: 833  IKEKEREEKLKEKLREEKIKEKEKEEKLRKEREEKMREKEREEKIKEKERVEKIKEKERE 892

Query: 631  QVAEAEQFFKDKEQERKDLLQAKIKSQRETLENGKNDKTTS--PDDQDNDSLKRRHDSPE 688
            +  + E+  ++K +E+++LL+ K K ++E  E  K  +      + +  + LKR  +  +
Sbjct: 893  EKLKKEK--EEKLKEKEELLKKKEKEEKEREEKLKEKERQEKLKEKEREEKLKRETEERQ 950

Query: 689  ADGNEEEQAVSKKQKLXXXXXXXXXXXXXQKEKALESEPTELKTIESTETEVEVPKE 745
             +  E E+ + +K++              +KE+ L+ +  ELK  E  E +    KE
Sbjct: 951  RE-KEREEKLKEKERAEKLKDLEKEVKLKEKEEQLKEKEKELKLKEKKEKDKVKEKE 1006


  Database: KOG eukaryal database 04/03
    Posted date:  Apr 14, 2003  1:07 PM
  Number of letters in database: 30,389,216
  Number of sequences in database:  60,738
  
Lambda     K      H
   0.315    0.134    0.388 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,323,862
Number of Sequences: 60738
Number of extensions: 1926410
Number of successful extensions: 10487
Number of sequences better than 1.0e-05: 1
Number of HSP's better than  0.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 10439
Number of HSP's gapped (non-prelim): 16
length of query: 753
length of database: 30,389,216
effective HSP length: 114
effective length of query: 639
effective length of database: 23,465,084
effective search space: 14994188676
effective search space used: 14994188676
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)