ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactVI3093 check: MH L KOG0390 Replication, recombination and repair DNA repair protein, SNF2 family
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactVI3093 1092494 1089702 -931
(931 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YBR073w [L] KOG0390 DNA repair protein SNF2 family 841 0.0
Hs6912622_2 [L] KOG0390 DNA repair protein SNF2 family 404 e-112
SPAC15A10.03c [L] KOG0390 DNA repair protein SNF2 family 384 e-106
YGL163c [L] KOG0390 DNA repair protein SNF2 family 373 e-103
Hs4506397 [L] KOG0390 DNA repair protein SNF2 family 365 e-100
CE25143 [L] KOG0390 DNA repair protein SNF2 family 358 2e-98
7295868 [L] KOG0390 DNA repair protein SNF2 family 358 3e-98
SPAC22F3.03c [L] KOG0390 DNA repair protein SNF2 family 329 1e-89
At3g19210 [L] KOG0390 DNA repair protein SNF2 family 322 1e-87
CE23323 [L] KOG0390 DNA repair protein SNF2 family 261 5e-69
ECU09g0410 [KL] KOG0387 Transcription-coupled repair protein CSB... 246 2e-64
Hs4557565 [KL] KOG0387 Transcription-coupled repair protein CSB/... 236 9e-62
At2g18760 [KL] KOG0387 Transcription-coupled repair protein CSB/... 220 7e-57
YJR035w [KL] KOG0387 Transcription-coupled repair protein CSB/RA... 216 1e-55
At5g44800 [R] KOG0383 Predicted helicase 211 4e-54
SPBC1826.01c [K] KOG0392 SNF2 family DNA-dependent ATPase domain... 209 2e-53
Hs17454125 [K] KOG0392 SNF2 family DNA-dependent ATPase domain-c... 209 2e-53
At3g06010 [BK] KOG0386 Chromatin remodeling complex SWI/SNF comp... 209 2e-53
YOR304w [K] KOG0385 Chromatin remodeling complex WSTF-ISWI small... 209 2e-53
SPCP25A2.02c [KL] KOG0387 Transcription-coupled repair protein C... 206 1e-52
At5g19310 [BK] KOG0386 Chromatin remodeling complex SWI/SNF comp... 204 4e-52
YBR245c [K] KOG0385 Chromatin remodeling complex WSTF-ISWI small... 203 9e-52
At2g13370 [K] KOG0384 Chromodomain-helicase DNA-binding protein 203 9e-52
YOR290c [BK] KOG0386 Chromatin remodeling complex SWI/SNF compon... 202 2e-51
CE05553 [BK] KOG0386 Chromatin remodeling complex SWI/SNF compon... 201 3e-51
YIL126w [BK] KOG0386 Chromatin remodeling complex SWI/SNF compon... 201 4e-51
Hs21914927 [K] KOG0385 Chromatin remodeling complex WSTF-ISWI sm... 199 1e-50
At1g03750 [KL] KOG0387 Transcription-coupled repair protein CSB/... 199 1e-50
Hs21071058 [K] KOG0385 Chromatin remodeling complex WSTF-ISWI sm... 199 2e-50
At2g25170 [R] KOG0383 Predicted helicase 199 2e-50
At2g28290 [BK] KOG0386 Chromatin remodeling complex SWI/SNF comp... 199 2e-50
YFR038w [K] KOG0385 Chromatin remodeling complex WSTF-ISWI small... 198 3e-50
Hs21071044 [K] KOG0385 Chromatin remodeling complex WSTF-ISWI sm... 198 3e-50
YPL082c [K] KOG0392 SNF2 family DNA-dependent ATPase domain-cont... 198 4e-50
Hs22047300 [K] KOG0384 Chromodomain-helicase DNA-binding protein 197 6e-50
At3g06400 [K] KOG0385 Chromatin remodeling complex WSTF-ISWI sma... 196 1e-49
Hs22047966 [K] KOG0384 Chromodomain-helicase DNA-binding protein 195 2e-49
7294205 [BK] KOG0386 Chromatin remodeling complex SWI/SNF compon... 195 2e-49
Hs21071056 [BK] KOG0386 Chromatin remodeling complex SWI/SNF com... 194 4e-49
At5g18620 [K] KOG0385 Chromatin remodeling complex WSTF-ISWI sma... 194 5e-49
Hs21071046 [K] KOG0385 Chromatin remodeling complex WSTF-ISWI sm... 194 7e-49
7303422 [K] KOG0385 Chromatin remodeling complex WSTF-ISWI small... 194 7e-49
Hs4557449 [K] KOG0384 Chromodomain-helicase DNA-binding protein 193 1e-48
At2g02090 [B] KOG0389 SNF2 family DNA-dependent ATPase 193 1e-48
CE11572 [K] KOG0384 Chromodomain-helicase DNA-binding protein 192 2e-48
At3g54280 [K] KOG0392 SNF2 family DNA-dependent ATPase domain-co... 191 4e-48
ECU10g1320 [K] KOG0385 Chromatin remodeling complex WSTF-ISWI sm... 190 1e-47
Hs20536191 [K] KOG0385 Chromatin remodeling complex WSTF-ISWI sm... 189 1e-47
7300091 [K] KOG0392 SNF2 family DNA-dependent ATPase domain-cont... 188 3e-47
Hs21362042 [K] KOG0384 Chromodomain-helicase DNA-binding protein 188 4e-47
SPAC1250.01 [BK] KOG0386 Chromatin remodeling complex SWI/SNF co... 187 5e-47
Hs21071050 [BK] KOG0386 Chromatin remodeling complex SWI/SNF com... 187 5e-47
Hs21071048 [BK] KOG0386 Chromatin remodeling complex SWI/SNF com... 187 5e-47
YER164w [K] KOG0384 Chromodomain-helicase DNA-binding protein 186 1e-46
ECU01g0350 [K] KOG0384 Chromodomain-helicase DNA-binding protein 186 1e-46
CE27114 [BK] KOG0386 Chromatin remodeling complex SWI/SNF compon... 186 1e-46
CE00789 [K] KOG0385 Chromatin remodeling complex WSTF-ISWI small... 186 1e-46
YAL019w [B] KOG0389 SNF2 family DNA-dependent ATPase 186 2e-46
At5g66750 [K] KOG0385 Chromatin remodeling complex WSTF-ISWI sma... 186 2e-46
7295870 [K] KOG0384 Chromodomain-helicase DNA-binding protein 186 2e-46
At1g08600 [K] KOG1015 Transcription regulator XNP/ATRX DEAD-box ... 185 2e-46
SPAC1783.05 [K] KOG0384 Chromodomain-helicase DNA-binding protein 185 3e-46
Hs20533808 [R] KOG0383 Predicted helicase 185 3e-46
CE03657 [R] KOG0383 Predicted helicase 185 3e-46
Hs4557447 [K] KOG0384 Chromodomain-helicase DNA-binding protein 184 6e-46
Hs4557451 [R] KOG0383 Predicted helicase 182 2e-45
CE18196 [K] KOG0384 Chromodomain-helicase DNA-binding protein 181 5e-45
CE11028 [KL] KOG0387 Transcription-coupled repair protein CSB/RA... 181 5e-45
Hs4557453 [R] KOG0383 Predicted helicase 181 6e-45
SPAC20G8.08c [B] KOG0389 SNF2 family DNA-dependent ATPase 180 8e-45
Hs14149730 [B] KOG0389 SNF2 family DNA-dependent ATPase 179 1e-44
SPAC3G6.01 [K] KOG0384 Chromodomain-helicase DNA-binding protein 178 3e-44
CE17716 [R] KOG0383 Predicted helicase 176 2e-43
7293795 [R] KOG0383 Predicted helicase 175 3e-43
SPBP35G2.10 [R] KOG0383 Predicted helicase 174 4e-43
7297570 [B] KOG0389 SNF2 family DNA-dependent ATPase 170 8e-42
CE16277 [B] KOG0389 SNF2 family DNA-dependent ATPase 170 1e-41
At5g63950 [KL] KOG0387 Transcription-coupled repair protein CSB/... 167 5e-41
ECU03g1530 [K] KOG0392 SNF2 family DNA-dependent ATPase domain-c... 161 4e-39
CE15856 [K] KOG0392 SNF2 family DNA-dependent ATPase domain-cont... 157 9e-38
At2g44980 [K] KOG0385 Chromatin remodeling complex WSTF-ISWI sma... 153 1e-36
At2g46020 [BK] KOG0386 Chromatin remodeling complex SWI/SNF comp... 147 6e-35
At1g05480 [L] KOG0390 DNA repair protein SNF2 family 146 2e-34
At3g24340 [L] KOG0390 DNA repair protein SNF2 family 140 9e-33
At2g21450 [L] KOG0390 DNA repair protein SNF2 family 136 1e-31
CE17314 [K] KOG1015 Transcription regulator XNP/ATRX DEAD-box su... 135 3e-31
7301343 [K] KOG1015 Transcription regulator XNP/ATRX DEAD-box su... 135 3e-31
At2g16390 [L] KOG0390 DNA repair protein SNF2 family 135 4e-31
Hs14767157 [K] KOG0385 Chromatin remodeling complex WSTF-ISWI sm... 134 9e-31
HsM8922362 [K] KOG0385 Chromatin remodeling complex WSTF-ISWI sm... 133 1e-30
CE27689 [B] KOG1000 Chromatin remodeling protein HARP/SMARCAL1 D... 127 8e-29
CE27688 [B] KOG1000 Chromatin remodeling protein HARP/SMARCAL1 D... 127 8e-29
At3g12810 [R] KOG0391 SNF2 family DNA-dependent ATPase 126 2e-28
7291744 [R] KOG1016 Predicted DNA helicase DEAD-box superfamily 126 2e-28
Hs20336209 [K] KOG1015 Transcription regulator XNP/ATRX DEAD-box... 125 3e-28
Hs20336207 [K] KOG1015 Transcription regulator XNP/ATRX DEAD-box... 125 3e-28
Hs20336205 [K] KOG1015 Transcription regulator XNP/ATRX DEAD-box... 125 3e-28
Hs5730067 [R] KOG0391 SNF2 family DNA-dependent ATPase 125 4e-28
CE25717 [R] KOG0391 SNF2 family DNA-dependent ATPase 122 3e-27
CE17477 [R] KOG1016 Predicted DNA helicase DEAD-box superfamily 117 8e-26
Hs20538502 [R] KOG1016 Predicted DNA helicase DEAD-box superfamily 116 1e-25
At4g31900 [R] KOG0383 Predicted helicase 116 1e-25
CE11083 [KL] KOG4439 RNA polymerase II transcription termination... 116 2e-25
YGL150c [L] KOG0388 SNF2 family DNA-dependent ATPase 115 4e-25
YDR334w [R] KOG0391 SNF2 family DNA-dependent ATPase 112 3e-24
ECU09g1890 [L] KOG0388 SNF2 family DNA-dependent ATPase 110 1e-23
SPAC17A2.12 [KL] KOG1001 Helicase-like transcription factor HLTF... 109 2e-23
Hs19923174 [KL] KOG4439 RNA polymerase II transcription terminat... 108 5e-23
7298963 [KL] KOG4439 RNA polymerase II transcription termination... 107 1e-22
ECU06g0820 [B] KOG1000 Chromatin remodeling protein HARP/SMARCAL... 105 3e-22
CE14110 [KL] KOG4439 RNA polymerase II transcription termination... 104 6e-22
SPCC1235.05c [B] KOG0389 SNF2 family DNA-dependent ATPase 104 7e-22
At5g43530 [KL] KOG1001 Helicase-like transcription factor HLTF/D... 104 7e-22
Hs21071060 [B] KOG1000 Chromatin remodeling protein HARP/SMARCAL... 101 5e-21
7296236 [K] KOG0384 Chromodomain-helicase DNA-binding protein 101 5e-21
SPAC25A8.01c [B] KOG0389 SNF2 family DNA-dependent ATPase 100 8e-21
SPBC582.10c [KL] KOG1001 Helicase-like transcription factor HLTF... 100 1e-20
At5g22750 [KL] KOG1001 Helicase-like transcription factor HLTF/D... 100 1e-20
At3g42670 [L] KOG0390 DNA repair protein SNF2 family 100 1e-20
SPCC330.01c [L] KOG1002 Nucleotide excision repair protein RAD16 100 2e-20
HsM14149926 [K] KOG0384 Chromodomain-helicase DNA-binding protein 99 2e-20
Hs13376715 [K] KOG0384 Chromodomain-helicase DNA-binding protein 98 7e-20
At5g05130 [KL] KOG1001 Helicase-like transcription factor HLTF/D... 96 3e-19
At1g05120 [L] KOG1002 Nucleotide excision repair protein RAD16 96 3e-19
7298962 [KL] KOG4439 RNA polymerase II transcription termination... 96 3e-19
At1g50410 [KL] KOG1001 Helicase-like transcription factor HLTF/D... 94 7e-19
YBR114w [L] KOG1002 Nucleotide excision repair protein RAD16 94 1e-18
At3g57300 [L] KOG0388 SNF2 family DNA-dependent ATPase 94 1e-18
SPBC23E6.02 [KL] KOG1001 Helicase-like transcription factor HLTF... 93 2e-18
At1g11100 [KL] KOG1001 Helicase-like transcription factor HLTF/D... 93 2e-18
At5g20420 [L] KOG0390 DNA repair protein SNF2 family 92 3e-18
At1g02670 [L] KOG1002 Nucleotide excision repair protein RAD16 92 3e-18
At3g20010 [KL] KOG1001 Helicase-like transcription factor HLTF/D... 92 4e-18
Hs21071052 [KL] KOG1001 Helicase-like transcription factor HLTF/... 92 5e-18
At1g61140 [KL] KOG1001 Helicase-like transcription factor HLTF/D... 90 2e-17
7296909 [B] KOG1000 Chromatin remodeling protein HARP/SMARCAL1 D... 89 2e-17
CE11450 [KL] KOG4439 RNA polymerase II transcription termination... 87 1e-16
Hs15805014 [R] KOG0391 SNF2 family DNA-dependent ATPase 84 8e-16
SPCC1620.14c [BK] KOG0386 Chromatin remodeling complex SWI/SNF c... 80 1e-14
YLR032w [KL] KOG1001 Helicase-like transcription factor HLTF/DNA... 77 9e-14
YOR191w [KL] KOG1001 Helicase-like transcription factor HLTF/DNA... 75 5e-13
SPAC144.05 [L] KOG0298 DEAD box-containing helicase-like transcr... 73 2e-12
SPAC13G6.01c [KL] KOG1001 Helicase-like transcription factor HLT... 73 2e-12
Hs4757978 [K] KOG0385 Chromatin remodeling complex WSTF-ISWI sma... 73 2e-12
At1g48310 [B] KOG1000 Chromatin remodeling protein HARP/SMARCAL1... 73 2e-12
7300511 [L] KOG0388 SNF2 family DNA-dependent ATPase 73 2e-12
At2g40770 [L] KOG0298 DEAD box-containing helicase-like transcri... 73 2e-12
At5g07810 [B] KOG1000 Chromatin remodeling protein HARP/SMARCAL1... 64 8e-10
SPAC3G6.12 [L] KOG0388 SNF2 family DNA-dependent ATPase 64 1e-09
At3g16600 [KL] KOG1001 Helicase-like transcription factor HLTF/D... 64 1e-09
YLR247c [L] KOG0298 DEAD box-containing helicase-like transcript... 63 2e-09
Hs22054523 [L] KOG0298 DEAD box-containing helicase-like transcr... 63 2e-09
At2g25020 [L] KOG0390 DNA repair protein SNF2 family 60 2e-08
Hs20532976 [B] KOG1000 Chromatin remodeling protein HARP/SMARCAL... 58 8e-08
7295362 [L] KOG0298 DEAD box-containing helicase-like transcript... 55 5e-07
>YBR073w [L] KOG0390 DNA repair protein SNF2 family
Length = 958
Score = 841 bits (2173), Expect = 0.0
Identities = 458/953 (48%), Positives = 607/953 (63%), Gaps = 71/953 (7%)
Query: 4 YVNKPFKRPRMVGRPGRDTLSEQIHTGLRPKSHHSHTKITNTSSETVKLTYAGPKSLKTS 63
Y NKPFK PR VG +T L+P + T +T K+T +LK S
Sbjct: 40 YENKPFKPPRRVG--------SNKYTQLKPTA----TAVTTAPISKAKVTV----NLKRS 83
Query: 64 VNAPVGVS--------KSSQEVSLFTANYRRVTNKKNKTWDGDGYANM-TSDDKLKFYNE 114
++A ++ S++ FT YR+ T KK+KTW GDGYA + S DKL FYNE
Sbjct: 84 ISAGPTLNLAKKPNNLSSNENTRYFTIMYRKPTTKKHKTWSGDGYATLKASSDKLCFYNE 143
Query: 115 AGVSLGS--VPIKDRDLYETIWRIGSTEFQIDYRISDQEELSSVQDICKIKVSH----TL 168
AG LGS +P L+ET+++ GS E Q+DY + + E+ S ++ + + T
Sbjct: 144 AGKFLGSSMLPSDSDSLFETLFKAGSNEVQLDYELKENAEIRSAKEALSQNMGNPSPPTT 203
Query: 169 GITDIPVAKKHKATIESKPPIQTFIPKITTKFKPLRKHLNGEPKVPPAQKQLVDQPTVKS 228
T+ + K+ P Q F +FK + K N +
Sbjct: 204 STTETVPSTKNDGGKYQMPLSQLFSLNTVKRFKSVTKQTNEH----------------MT 247
Query: 229 ALPPLSQELIGQITYSPLFDPVSIKDPLIMNKTENHKVSVIVDPLLSKTLRPHQREGVKF 288
+P SQ + Y P+FD I +P++MNK +V VIVDPLL K LRPHQREGVKF
Sbjct: 248 TVPKTSQNSKAK-KYYPVFDVNKIDNPIVMNKNAAAEVDVIVDPLLGKFLRPHQREGVKF 306
Query: 289 LYDCVMNMVHTKGD--------ESMILERDDDIKGCLLADEMGLGKXXXXXXXXXXXXKQ 340
+YDC+M + + +S++LE D DI GCLLAD+MGLGK +Q
Sbjct: 307 MYDCLMGLARPTIENPDIDCTTKSLVLENDSDISGCLLADDMGLGKTLMSITLIWTLIRQ 366
Query: 341 TPYPTIIN--QRGVTLAGEISKVLIVCPVTLIGNWKKEFKKWLPMNRIGVLTLHSRNSPT 398
TP+ + ++ Q G+ L G K+L+VCPVTLIGNWK+EF KWL ++RIGVLTL SRNSP
Sbjct: 367 TPFASKVSCSQSGIPLTGLCKKILVVCPVTLIGNWKREFGKWLNLSRIGVLTLSSRNSPD 426
Query: 399 EDKAQVRSFLKVPRTYQVLIVGYEKLLSIKDELQNEKRNLDLVICDEGHRLKNKDSKILK 458
DK VR+FLKV RTYQVLI+GYEKLLS+ +EL+ K +D+++CDEGHRLKN SKIL
Sbjct: 427 MDKMAVRNFLKVQRTYQVLIIGYEKLLSVSEELEKNKHLIDMLVCDEGHRLKNGASKILN 486
Query: 459 VLQSLDIEKKIVLSGTPIQNDLEEFYTIIDFINPGILGSFGRFKREYILPIARSRDVNAK 518
L+SLDI +K++L+GTPIQNDL EF+TIIDFINPGILGSF FKR +I+PI R+RD +
Sbjct: 487 TLKSLDIRRKLLLTGTPIQNDLNEFFTIIDFINPGILGSFASFKRRFIIPITRARDTANR 546
Query: 519 QNQTLVEQGLLRSDQLIEITKRFILRRTNEILQQYLPPRTDLIIFCKPTAEQVEAFHKIL 578
N+ L+E+G RS ++IEITKRFILRRTN IL++YLPP+TD+I+FCKP ++Q+ AF IL
Sbjct: 547 YNEELLEKGEERSKEMIEITKRFILRRTNAILEKYLPPKTDIILFCKPYSQQILAFKDIL 606
Query: 579 TEGQLNFSNMTFNSSLGLITLFKKICNSTRLIKTDPYYEERLSQVQX-XXXXXXXXXXXL 637
+L+F +TF+SSLGLITL KK+CNS L+ +DPYY+ + Q L
Sbjct: 607 QGARLDFGQLTFSSSLGLITLLKKVCNSPGLVGSDPYYKSHIKDTQSQDSYSRSLNSGKL 666
Query: 638 RILLSLLHELKTKTDEKVVVISNYTQTLDIIEGHCSSEGYTSARLDGSTATKTRDQIVTS 697
++L++LL ++ T EKVVV+SNYTQTLDIIE + G + RLDGS K RD IVTS
Sbjct: 667 KVLMTLLEGIRKGTKEKVVVVSNYTQTLDIIENLMNMAGMSHCRLDGSIPAKQRDSIVTS 726
Query: 698 FNNDPSIFVFLLSAKSGGVGLNLIGASRLVLFDNDWNPSIDLQAMSRIHRDGQRRPCFIY 757
FN +P+IF FLLSAKSGGVGLNL+G SRL+LFDNDWNPS+DLQAMSRIHRDGQ++PCFIY
Sbjct: 727 FNRNPAIFGFLLSAKSGGVGLNLVGRSRLILFDNDWNPSVDLQAMSRIHRDGQKKPCFIY 786
Query: 758 RLVTTGCIDEKILQRQLMKIALSKKFLDSATDQSK--NDDDLFQQEELKDLFTINLSTLS 815
RLVTTGCIDEKILQRQLMK +LS+KFL + ++K ++DDLF +E+LKDLF+++ T S
Sbjct: 787 RLVTTGCIDEKILQRQLMKNSLSQKFLGDSEMRNKESSNDDLFNKEDLKDLFSVHTDTKS 846
Query: 816 NTHDLICNCSGXXXXXXXXXITGTDEANAQPEYQXXXXXXXXXXXXIWINALEAQKIIEK 875
NTHDLIC+C G G + + Q W +AL+ QK + +
Sbjct: 847 NTHDLICSCDG----------LGEEIEYPETNQQQNTVELRKRSTTTWTSALDLQKKMNE 896
Query: 876 EEILRNGTKSEIMRKCLLGYKHIDPQKTNDLIDEAMNNVFDDARQYITYALVK 928
+ KS+ +R+CL+ YKHIDP + ++L DE + + F + + IT+A VK
Sbjct: 897 AATNDDAKKSQYIRQCLVHYKHIDPARQDELFDEVITDSFTELKDSITFAFVK 949
>Hs6912622_2 [L] KOG0390 DNA repair protein SNF2 family
Length = 808
Score = 404 bits (1037), Expect = e-112
Identities = 257/622 (41%), Positives = 348/622 (55%), Gaps = 81/622 (13%)
Query: 245 PLFDPVSIKDPLIMNKTENHK----------VSVIVDPLLSKTLRPHQREGVKFLYDCVM 294
P DP + ++ +NH+ V V++DP L LRPHQ+EG+ FLY+CVM
Sbjct: 151 PRHDPYTPNSLVMPRPDKNHQWVFNKNCFPLVDVVIDPYLVYHLRPHQKEGIIFLYECVM 210
Query: 295 NMVHTKGDESMILERDDDIKGCLLADEMGLGKXXXXXXXXXXXXKQTPYPTIINQRGVTL 354
M R + G +LADEMGLGK Q PY
Sbjct: 211 GM------------RMNGRCGAILADEMGLGKTLQCISLIWTLQCQGPY----------- 247
Query: 355 AGE--ISKVLIVCPVTLIGNWKKEFKKWLPMNRIGVLTLHSRNSPTEDKAQVRSFLKVPR 412
G+ I K LIV P +L+ NWKKEF+KWL RI + T+ + +V F+K
Sbjct: 248 GGKPVIKKTLIVTPGSLVNNWKKEFQKWLGSERIKIFTV-------DQDHKVEEFIK-SI 299
Query: 413 TYQVLIVGYEKLLSIKDELQNEKRNLDLVICDEGHRLKNKDSKILKVLQSLDIEKKIVLS 472
Y VLI+ YE LL D+++N K DL+ICDEGHRLKN K L SL EK+I+L+
Sbjct: 300 FYSVLIISYEMLLRSLDQIKNIK--FDLLICDEGHRLKNSAIKTTTALISLSCEKRIILT 357
Query: 473 GTPIQNDLEEFYTIIDFINPGILGSFGRFKREYILPIARSRDVNAKQNQTLVEQGLLRSD 532
GTPIQNDL+EF+ +IDF+NPGILGS +++ Y PI SR+ +A + + E G R+
Sbjct: 358 GTPIQNDLQEFFALIDFVNPGILGSLSSYRKIYEEPIILSREPSASEEEK--ELGERRAA 415
Query: 533 QLIEITKRFILRRTNEILQQYLPPRTDLIIFCKPTAEQVEAFHKILTEGQLNF--SNMTF 590
+L +T FILRRT EI+ +YLPP+ + ++FC+P A Q+E + K+L + F +
Sbjct: 416 ELTCLTGLFILRRTQEIINKYLPPKIENVVFCRPGALQIELYRKLLNSQVVRFCLQGLLE 475
Query: 591 NS-SLGLITLFKKICNSTRLI----------------KTDPYYEERLSQVQX------XX 627
NS L I KK+CN L+ + Y+ LS
Sbjct: 476 NSPHLICIGALKKLCNHPCLLFNSIKEKECSSTCDKNEEKSLYKGLLSVFPADYNPLLFT 535
Query: 628 XXXXXXXXXLRILLSLLHELKTKTDEKVVVISNYTQTLDIIEGHCSSEGYTSARLDGSTA 687
L LL+++HEL + EKVV++SNYTQTL+I++ C GY RLDG T
Sbjct: 536 EKESGKLQVLSKLLAVIHEL--RPTEKVVLVSNYTQTLNILQEVCKRHGYAYTRLDGQTP 593
Query: 688 TKTRDQIVTSFNND-PSIFVFLLSAKSGGVGLNLIGASRLVLFDNDWNPSIDLQAMSRIH 746
R QIV FN+ S F+FLLS+K+GGVGLNLIG S L+L+D DWNP+ D+QAMSR+
Sbjct: 594 ISQRQQIVDGFNSQHSSFFIFLLSSKAGGVGLNLIGGSHLILYDIDWNPATDIQAMSRVW 653
Query: 747 RDGQRRPCFIYRLVTTGCIDEKILQRQLMKIALSKKFLDSATDQSKNDDDL-FQQEELKD 805
RDGQ+ P IYRL+TTG I+EKI QRQ+ K L + D +K + + F EELK+
Sbjct: 654 RDGQKYPVHIYRLLTTGTIEEKIYQRQISKQGL----CGAVVDLTKTSEHIQFSVEELKN 709
Query: 806 LFTINLSTLSNTHDLI-CNCSG 826
LFT++ S+ THDL+ C C+G
Sbjct: 710 LFTLHESSDCVTHDLLDCECTG 731
>SPAC15A10.03c [L] KOG0390 DNA repair protein SNF2 family
Length = 852
Score = 384 bits (986), Expect = e-106
Identities = 224/589 (38%), Positives = 334/589 (56%), Gaps = 52/589 (8%)
Query: 251 SIKDPLIMNKTENHK--VSVIVDPLLSKTLRPHQREGVKFLYDCVMNMVHTKGDESMILE 308
S+KD L + K + V+V++DP L++ LRPHQ EGVKFLY CV +
Sbjct: 235 SLKDLLGIQKEKPPPPPVAVVIDPKLARILRPHQIEGVKFLYKCVTGRI----------- 283
Query: 309 RDDDIKGCLLADEMGLGKXXXXXXXXXXXXKQTPYPTIINQRGVTLAGE--ISKVLIVCP 366
D GC++ADEMGLGK KQ+P AG+ I K +I CP
Sbjct: 284 -DRCANGCIMADEMGLGKTLQCIALLWTLLKQSPQ-----------AGKPTIEKAIITCP 331
Query: 367 VTLIGNWKKEFKKWLPMNRIGVLTLHSRNSPTEDKAQVRSFLKVPR---TYQVLIVGYEK 423
+L+ NW E KWL + I L ++S E ++ + V T VLI YE
Sbjct: 332 SSLVKNWANELVKWLGKDAITPFILDGKSSKQELIMALQQWASVHGRQVTRPVLIASYET 391
Query: 424 LLSIKDELQNEKRNLDLVICDEGHRLKNKDSKILKVLQSLDIEKKIVLSGTPIQNDLEEF 483
L S + L N + + +++CDEGHRLKN DS L L+++++++LSGTPIQNDL E+
Sbjct: 392 LRSYVEHLNNAE--IGMLLCDEGHRLKNSDSLTFTALDKLNVQRRVILSGTPIQNDLSEY 449
Query: 484 YTIIDFINPGILGSFGRFKREYILPIARSRDVNAKQNQTLVEQGLLRSDQLIEITKRFIL 543
+++++F NPG+LGS F++ Y +PI + RD + + E G + +L +I RFI+
Sbjct: 450 FSLLNFANPGLLGSRQEFRKNYEIPILKGRDADGTEKDK--ENGDAKLAELAKIVNRFII 507
Query: 544 RRTNEILQQYLPPRTDLIIFCKPTAEQVEAFHKILTEGQLN-FSNMTFNSSLGLITLFKK 602
RRTN+IL +YLP + + ++FC + Q+ + +T ++N T + L I L KK
Sbjct: 508 RRTNDILSKYLPVKYEHVVFCNLSEFQLSLYKHFITSPEINKILRGTGSQPLKAIGLLKK 567
Query: 603 ICNSTRLIKT-----------DPYYEERLSQVQXXXXXXXXXXXXLRILLSLLHELKTKT 651
ICN L+ P + R + + L +L +L+++K +T
Sbjct: 568 ICNHPDLLNLTEDLEGCEALFPPGFIPRELRGRDRNIDSSLSGKML-VLERMLYQIKQET 626
Query: 652 DEKVVVISNYTQTLDIIEGHCSSEGYTSARLDGSTATKTRDQIVTSFNN-DPSIFVFLLS 710
D+K+V+ISNYT TLD+ E C + GY + RLDG+ R ++V +FN+ + FVFLLS
Sbjct: 627 DDKIVLISNYTSTLDLFEQLCRARGYKALRLDGTMNVNKRQRLVDTFNDPEKDAFVFLLS 686
Query: 711 AKSGGVGLNLIGASRLVLFDNDWNPSIDLQAMSRIHRDGQRRPCFIYRLVTTGCIDEKIL 770
+K+GG G+NLIGA+RL+LFD DWNP+ D QA++R+ RDGQ++ CF+YR + TG I+EKI
Sbjct: 687 SKAGGCGINLIGANRLILFDPDWNPAADQQALARVWRDGQKKDCFVYRFIATGTIEEKIF 746
Query: 771 QRQLMKIALSKKFLDSATDQSKNDDDLFQQEELKDLFTINLSTLSNTHD 819
QRQ K +LS +D A D ++ F + L+ LF +N T+ TH+
Sbjct: 747 QRQSHKQSLSSCVVDEAQDVERH----FSLDNLRQLFQLNDHTVCETHE 791
>YGL163c [L] KOG0390 DNA repair protein SNF2 family
Length = 898
Score = 373 bits (957), Expect = e-103
Identities = 226/619 (36%), Positives = 336/619 (53%), Gaps = 74/619 (11%)
Query: 259 NKTENHKVSVIVDPLLSKTLRPHQREGVKFLYDCVMNMVHT----------------KGD 302
NK + V V++DP L+K LRPHQ EGV+FLY CV +V K D
Sbjct: 252 NKKKFASVPVVIDPKLAKILRPHQVEGVRFLYRCVTGLVMKDYLEAEAFNTSSEDPLKSD 311
Query: 303 ESMILERDDDIK------GCLLADEMGLGKXXXXXXXXXXXXKQTPYPTIINQRGVTLAG 356
E + E + GC++ADEMGLGK +Q P +G L
Sbjct: 312 EKALTESQKTEQNNRGAYGCIMADEMGLGKTLQCIALMWTLLRQGP-------QGKRL-- 362
Query: 357 EISKVLIVCPVTLIGNWKKEFKKWLPMNRIGVLTLHSRNSPTED-------------KAQ 403
I K +IVCP +L+ NW E KWL N + L + + S +AQ
Sbjct: 363 -IDKCIIVCPSSLVNNWANELIKWLGPNTLTPLAVDGKKSSMGGGNTTVSQAIHAWAQAQ 421
Query: 404 VRSFLKVPRTYQVLIVGYEKLLSIKDELQNEKRNLDLVICDEGHRLKNKDSKILKVLQSL 463
R+ +K VLI+ YE L D+L+N N+ L++ DEGHRLKN DS L S+
Sbjct: 422 GRNIVK-----PVLIISYETLRRNVDQLKN--CNVGLMLADEGHRLKNGDSLTFTALDSI 474
Query: 464 DIEKKIVLSGTPIQNDLEEFYTIIDFINPGILGSFGRFKREYILPIARSRDVNAKQNQTL 523
++++LSGTPIQNDL E++ ++ F NPG+LGS F++ + PI R RD +A +
Sbjct: 475 SCPRRVILSGTPIQNDLSEYFALLSFSNPGLLGSRAEFRKNFENPILRGRDADATDKE-- 532
Query: 524 VEQGLLRSDQLIEITKRFILRRTNEILQQYLPPRTDLIIFCKPTAEQVEAFHKILTEGQL 583
+ +G + +L I +FI+RRTN+IL +YLP + + +IF Q E ++K++ ++
Sbjct: 533 ITKGEAQLQKLSTIVSKFIIRRTNDILAKYLPCKYEHVIFVNLKPLQNELYNKLIKSREV 592
Query: 584 N--FSNMTFNSSLGLITLFKKICNSTRLIKTDPYYEERLSQV---------QXXXXXXXX 632
+ + L I + KK+CN L+ + +++
Sbjct: 593 KKVVKGVGGSQPLRAIGILKKLCNHPNLLNFEDEFDDEDDLELPDDYNMPGSKARDVQTK 652
Query: 633 XXXXLRILLSLLHELKTKTDEKVVVISNYTQTLDIIEGHCSSEGYTSARLDGSTATKTRD 692
IL LH++KT++D+K+V+ISNYTQTLD+IE C + Y++ RLDG+ + R
Sbjct: 653 YSAKFSILERFLHKIKTESDDKIVLISNYTQTLDLIEKMCRYKHYSAVRLDGTMSINKRQ 712
Query: 693 QIVTSFNN-DPSIFVFLLSAKSGGVGLNLIGASRLVLFDNDWNPSIDLQAMSRIHRDGQR 751
++V FN+ + F+FLLS+K+GG G+NLIGA+RL+L D DWNP+ D QA++R+ RDGQ+
Sbjct: 713 KLVDRFNDPEGQEFIFLLSSKAGGCGINLIGANRLILMDPDWNPAADQQALARVWRDGQK 772
Query: 752 RPCFIYRLVTTGCIDEKILQRQLMKIALSKKFLDSATDQSKNDDDLFQQEELKDLFTINL 811
+ CFIYR ++TG I+EKI QRQ MK++LS +D+ D + LF + L+ LF N
Sbjct: 773 KDCFIYRFISTGTIEEKIFQRQSMKMSLSSCVVDAKEDVER----LFSSDNLRQLFQKNE 828
Query: 812 STLSNTHDLI----CNCSG 826
+T+ TH+ CN G
Sbjct: 829 NTICETHETYHCKRCNAQG 847
>Hs4506397 [L] KOG0390 DNA repair protein SNF2 family
Length = 747
Score = 365 bits (937), Expect = e-100
Identities = 233/605 (38%), Positives = 342/605 (56%), Gaps = 56/605 (9%)
Query: 232 PLSQELIGQITYSPLFDPVSIKDPLIMNKTENHKVSVIVDPLLSKTLRPHQREGVKFLYD 291
PL ++ + + Y P P+S D L ++K E V V+VDP+LSK LRPHQREGVKFL++
Sbjct: 112 PLEKDAL--VLYEP--PPLSAHDQLKLDK-EKLPVHVVVDPILSKVLRPHQREGVKFLWE 166
Query: 292 CVMNMVHTKGDESMILERDDDIKGCLLADEMGLGKXXXXXXXXXXXXKQTPYPTIINQRG 351
CV + R GC++ADEMGLGK +Q+P
Sbjct: 167 CVTS------------RRIPGSHGCIMADEMGLGKTLQCITLMWTLLRQSP--------- 205
Query: 352 VTLAGEISKVLIVCPVTLIGNWKKEFKKWLPMNRIGVLTLHSRNSPTEDKAQVRSFLK-- 409
EI K ++V P +L+ NW E KWL RI L + S E ++ F+
Sbjct: 206 -ECKPEIDKAVVVSPSSLVKNWYNEVGKWLG-GRIQPLAIDG-GSKDEIDQKLEGFMNQR 262
Query: 410 -VPRTYQVLIVGYEKLLSIKDELQNEKRNLDLVICDEGHRLKNKDSKILKVLQSLDIEKK 468
+ +LI+ YE LQ K ++ LVICDEGHRLKN +++ + L SL+ ++
Sbjct: 263 GARVSSPILIISYETFRLHVGVLQ--KGSVGLVICDEGHRLKNSENQTYQALDSLNTSRR 320
Query: 469 IVLSGTPIQNDLEEFYTIIDFINPGILGSFGRFKREYILPIARSRDVNAKQNQTLVEQGL 528
+++SGTPIQNDL E+++++ F+N GILG+ FK+ + LPI + RD A + + +
Sbjct: 321 VLISGTPIQNDLLEYFSLVHFVNSGILGTAHEFKKHFELPILKGRDAAASEADRQLGEER 380
Query: 529 LRSDQLIEITKRFILRRTNEILQQYLPPRTDLIIFCKPTAEQVEAFHKILTEG----QLN 584
LR +L I R ++RRT++IL +YLP + + ++ C+ T Q E + + L + +L
Sbjct: 381 LR--ELTSIVNRCLIRRTSDILSKYLPVKIEQVVCCRLTPLQTELYKRFLRQAKPAEELL 438
Query: 585 FSNMTFNSSLGLITLFKKICNSTRLIKTDPYYEERLSQV---------QXXXXXXXXXXX 635
M+ SSL IT KK+CN LI D EE V
Sbjct: 439 EGKMSV-SSLSSITSLKKLCNHPALIY-DKCVEEEDGFVGALDLFPPGYSSKALEPQLSG 496
Query: 636 XLRILLSLLHELKTKTDEKVVVISNYTQTLDIIEGHCSSEGYTSARLDGSTATKTRDQIV 695
+ +L +L ++++ +KVV++SNYTQTLD+ E C + Y RLDG+ + K R ++V
Sbjct: 497 KMLVLDYILAVTRSRSSDKVVLVSNYTQTLDLFEKLCRARRYLYVRLDGTMSIKKRAKVV 556
Query: 696 TSFNNDPSI-FVFLLSAKSGGVGLNLIGASRLVLFDNDWNPSIDLQAMSRIHRDGQRRPC 754
FN+ S FVF+LS+K+GG GLNLIGA+RLV+FD DWNP+ D QAM+R+ RDGQ++ C
Sbjct: 557 ERFNSPSSPDFVFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTC 616
Query: 755 FIYRLVTTGCIDEKILQRQLMKIALSKKFLDSATDQSKNDDDLFQQEELKDLFTINLSTL 814
+IYRL++ G I+EKI QRQ K ALS +D D ++ F ELK+LF ++ ++L
Sbjct: 617 YIYRLLSAGTIEEKIFQRQSHKKALSSCVVDEEQDVERH----FSLGELKELFILDEASL 672
Query: 815 SNTHD 819
S+THD
Sbjct: 673 SDTHD 677
>CE25143 [L] KOG0390 DNA repair protein SNF2 family
Length = 818
Score = 358 bits (919), Expect = 2e-98
Identities = 212/591 (35%), Positives = 335/591 (55%), Gaps = 49/591 (8%)
Query: 246 LFDPVSIKDPLIMNKTENHKVSVIVDPLLSKTLRPHQREGVKFLYDCVMNMVHTKGDESM 305
L+ P + + + + ++ KV V+ DP++ K LRPHQR+GVKF++DCV +
Sbjct: 170 LYAPEHLSEHAQLKEDKDRKVHVVADPVVGKILRPHQRDGVKFMWDCVTGI--------- 220
Query: 306 ILERDDDIKGCLLADEMGLGKXXXXXXXXXXXXKQTPYPTIINQRGVTLAGEISKVLIVC 365
+ GC++ADEMGLGK +Q+P +SK +IVC
Sbjct: 221 ---NIPEFHGCIMADEMGLGKTLQCISLLWTLLRQSP----------DACPTVSKSIIVC 267
Query: 366 PVTLIGNWKKEFKKWLPMNRIGVLTLHSRNSPTEDKAQVRSFL---KVPRTYQVLIVGYE 422
P +L+ NW KE KKWL R+ + + S + A + SF+ K+ VLI+ YE
Sbjct: 268 PSSLVKNWDKEIKKWLG-TRLNAMPVDS-GKREQIIACLNSFMADSKMRCAIPVLIISYE 325
Query: 423 KLLSIKDELQNEKRNLDLVICDEGHRLKNKDSKILKVLQSLDIEKKIVLSGTPIQNDLEE 482
+ L + ++ +VICDEGHRLKN ++ + L L +++++SGTPIQNDL E
Sbjct: 326 TFRLYANILHSG--DVGIVICDEGHRLKNSENLTYQALSGLKCARRVLISGTPIQNDLLE 383
Query: 483 FYTIIDFINPGILGSFGRFKREYILPIARSRDVNAKQNQTLVEQGLLRSDQLIEITKRFI 542
++++++F+NPG+LG+ F++++ I + RD +A ++G ++ ++I + ++ I
Sbjct: 384 YFSLVNFVNPGLLGTASEFRKKFENAILKGRDADASSEDQ--KKGEEKTKEMISLVEKCI 441
Query: 543 LRRTNEILQQYLPPRTDLIIFCKPTAEQVEAFHKILTEGQLNF----SNMTFNSSLGLIT 598
+RRT+ +L +YLP + + II CK + Q ++K++ + N S+L IT
Sbjct: 442 IRRTSALLTKYLPVKYEHIICCKNSTLQETLYNKLIECEKQNRIVEKDKGATASALSFIT 501
Query: 599 LFKKICNSTRLI-----KTDPYYEERLSQVQXXX----XXXXXXXXXLRILLSLLHELKT 649
KK+CN L+ K D + + + +++L +L +
Sbjct: 502 HLKKLCNHPYLVYDEFQKPDNRFRNKCLSIFPESFNPKSFDPSFSGKMKVLDYILAVTRK 561
Query: 650 KTDEKVVVISNYTQTLDIIEGHCSSEGYTSARLDGSTATKTRDQIVTSFNNDPS-IFVFL 708
TD+K V++SNYTQT+D C GY RLDGS + K R +IV +FN+ S IF FL
Sbjct: 562 TTDDKFVLVSNYTQTIDQFMELCKLRGYDFVRLDGSMSIKQRSKIVDTFNDPASTIFCFL 621
Query: 709 LSAKSGGVGLNLIGASRLVLFDNDWNPSIDLQAMSRIHRDGQRRPCFIYRLVTTGCIDEK 768
LS+K+GG GLNLIGA+RLV+FD DWNP+ D QAM+R+ RDGQ++ CFIYRL+ TG I+EK
Sbjct: 622 LSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRDGQKKMCFIYRLLATGSIEEK 681
Query: 769 ILQRQLMKIALSKKFLDSATDQSKNDDDLFQQEELKDLFTINLSTLSNTHD 819
+ QRQ K ALS +D+ D +++ F E+L++LF + + S+TH+
Sbjct: 682 MFQRQTHKKALSSCVVDAGEDVARH----FSSEQLRELFKLESTVASDTHE 728
>7295868 [L] KOG0390 DNA repair protein SNF2 family
Length = 784
Score = 358 bits (918), Expect = 3e-98
Identities = 225/608 (37%), Positives = 338/608 (55%), Gaps = 63/608 (10%)
Query: 241 ITYSPLFDPVSIKDPLIMNK---TENHK---------VSVIVDPLLSKTLRPHQREGVKF 288
I+ PL DP++ ++ + TE+ + V V+VDPLLS LRPHQREGV+F
Sbjct: 107 ISRRPLHDPMACNALVLFHPPAYTEHERMGMDPTKVLVHVVVDPLLSNILRPHQREGVRF 166
Query: 289 LYDCVMNMVHTKGDESMILERDDDIKGCLLADEMGLGKXXXXXXXXXXXXKQTPY--PTI 346
+Y+CV + + GC++ADEMGLGK +Q P PTI
Sbjct: 167 MYECVEG-------------KRGNFNGCIMADEMGLGKTLQCVTLVWTLLRQGPECKPTI 213
Query: 347 INQRGVTLAGEISKVLIVCPVTLIGNWKKEFKKWLPMNRIGVLTLHSRNSPTEDKAQVRS 406
+K ++V P +L+ NW+KEF KWL R+ L + +A +
Sbjct: 214 ------------NKAIVVSPSSLVKNWEKEFTKWLH-GRLLCLPMEGGTKENTIRALEQF 260
Query: 407 FLKVPRT-YQVLIVGYEKLLSIKDELQNEKRNLDLVICDEGHRLKNKDSKILKVLQSLDI 465
+ R VL++ YE + L K + +VICDEGHRLKN D+ + L L
Sbjct: 261 SMTSARLGTPVLLISYETFRIYAEILC--KYEVGMVICDEGHRLKNSDNLTYQALMGLKT 318
Query: 466 EKKIVLSGTPIQNDLEEFYTIIDFINPGILGSFGRFKREYILPIARSRDVNAKQNQTLVE 525
+++++LSGTPIQNDL E+Y++++F+NP +LG+ FKR + I R ++ ++ + + +
Sbjct: 319 KRRVLLSGTPIQNDLTEYYSLVNFVNPEMLGTAAVFKRNFESAILRGQNTDSTEQER--Q 376
Query: 526 QGLLRSDQLIEITKRFILRRTNEILQQYLPPRTDLIIFCKPTAEQVEAFHKILTEGQLNF 585
+ + ++ +LI + + I+RRTN+IL +YLP + +++I K TA Q+E + L Q+
Sbjct: 377 RAIEKTQELIGLVDQCIIRRTNQILTKYLPVKFEMVICAKLTAIQLELYTNFLKSDQVRR 436
Query: 586 SNMTFNSSLGL-----ITLFKKICNSTRLIKTDPYYEERLSQVQXXXXXXXXXXXXLRIL 640
S N L IT KKIC+ LI E+ + L
Sbjct: 437 SLADCNEKASLTALADITTLKKICSHPDLIYEKLTAREKGFENSQNVLPSNYKPKDLNPE 496
Query: 641 LS--------LLHELKTKTDEKVVVISNYTQTLDIIEGHCSSEGYTSARLDGSTATKTRD 692
LS +L ++ + ++KVV+ISNYTQTLD+ E Y RLDG+ + K R
Sbjct: 497 LSGKFMLLDFMLAAIRAEGNDKVVLISNYTQTLDLFEQLARKRKYGFVRLDGTMSIKKRS 556
Query: 693 QIVTSFNNDPS-IFVFLLSAKSGGVGLNLIGASRLVLFDNDWNPSIDLQAMSRIHRDGQR 751
++V FN+ S F+F+LS+K+GG GLNLIGA+RL +FD DWNP+ D QAM+R+ RDGQ+
Sbjct: 557 KVVDRFNDPESDSFLFMLSSKAGGCGLNLIGANRLFMFDPDWNPANDEQAMARVWRDGQK 616
Query: 752 RPCFIYRLVTTGCIDEKILQRQLMKIALSKKFLDSATDQSKNDDDLFQQEELKDLFTINL 811
+PC+IYRLV +G I+EKILQRQ K +LS +D+ K+ F +++LKDLFT +
Sbjct: 617 KPCYIYRLVASGSIEEKILQRQTHKKSLSSTIIDNNESAEKH----FTRDDLKDLFTFDA 672
Query: 812 STLSNTHD 819
+ LS+THD
Sbjct: 673 NILSDTHD 680
>SPAC22F3.03c [L] KOG0390 DNA repair protein SNF2 family
Length = 768
Score = 329 bits (843), Expect = 1e-89
Identities = 213/587 (36%), Positives = 314/587 (53%), Gaps = 51/587 (8%)
Query: 245 PLFDPVSIKDPLIMNKTENHK----VSVIVDPLLSKTLRPHQREGVKFLYDCVMNMVHTK 300
P DP ++ L+M++ + V V++DP LSK L HQREGV FLYDC++ M
Sbjct: 126 PRHDP-TVLGALVMSRPKTWDPRTHVDVVIDPFLSKHLYSHQREGVSFLYDCLLGMEGKC 184
Query: 301 GDESMILERDDDIKGCLLADEMGLGKXXXXXXXXXXXXKQTPYPTIINQRGVTLAGEISK 360
G + +LADEMGLGK KQ+ Y + I+
Sbjct: 185 GYSA------------ILADEMGLGKTLQTITVVWTLLKQSYY--------ANRSSTINN 224
Query: 361 VLIVCPVTLIGNWKKEFKKWLPMNRIGVLTLHSRNSPTEDKAQVRSFLKVPRTYQVLIVG 420
++V PVTL+ NW+ EF WL RI V ED + S +TY ++I G
Sbjct: 225 AMVVAPVTLLKNWENEFYNWLGHERIHVYIARC----AEDFQEFTS----NKTYSIIITG 276
Query: 421 YEKLLSIKDELQNEKR--NLDLVICDEGHRLKNKDSKILKVLQSLDIEKKIVLSGTPIQN 478
YE + + L+N ++DL+ICDE HRLK+ S+ L L K+++L+GTP+QN
Sbjct: 277 YETVCTY---LRNYGCGIDIDLLICDEAHRLKSMSSQTWITLNKLKTRKRLLLTGTPLQN 333
Query: 479 DLEEFYTIIDFINPGILGSFGRFKREYILPIARSRDVNAKQNQTLVEQGLLRSDQLIEIT 538
DL E++++++FI PG LG+ FK +Y PI RSR +NA + G R +L E T
Sbjct: 334 DLSEYFSMVNFIIPGSLGTPNSFKAQYERPILRSRSMNASSRD--ISLGAARLQRLFEFT 391
Query: 539 KRFILRRTNEILQQYLPPRTDLIIFCKPTAEQVEAFHKILTEGQLNFSNMTFNSSLGLIT 598
F LRR IL ++LPPRTD+++F KPT +Q + +L + + + L ++T
Sbjct: 392 SNFTLRRKANILAKHLPPRTDIVLFIKPTHQQENVYGHVLDGFKSSVDQKGYY--LKILT 449
Query: 599 LFKKICNSTRLIKTDP---YYEERLSQVQXXXXXXXXXXXXLRILLSLLHELKTKTDEKV 655
KICNST L++ + E + L+IL +LL + + +K
Sbjct: 450 RLSKICNSTILLRNEKENFLSTELQDKHVFEQENMLLSSSKLQILAALLKSFQ-RGCQKA 508
Query: 656 VVISNYTQTLDIIEGHCSSEGYTSARLDGSTATKTRDQIVTSFNNDP--SIFVFLLSAKS 713
V++S Y +TL++IE S +L GST RD IV +FN V LLS+K+
Sbjct: 509 VIVSQYKETLELIELFLSILHVRFCKLLGSTPFSERDLIVHNFNTSSFKEFSVLLLSSKA 568
Query: 714 GGVGLNLIGASRLVLFDNDWNPSIDLQAMSRIHRDGQRRPCFIYRLVTTGCIDEKILQRQ 773
GG GLNL G++RL++++ WNP+ DLQA+SRI+R GQ+RP IY +++G +DE+I RQ
Sbjct: 569 GGCGLNLTGSTRLIIYEPSWNPAQDLQALSRIYRSGQKRPVCIYTFLSSGMLDERIFIRQ 628
Query: 774 LMKIALSKKFLDSATDQSKNDDDLFQQEELKDLFTINLSTLSNTHDL 820
K LS F+DS Q KN F E++K LF+ + + T++L
Sbjct: 629 NTKQGLSSSFIDSDASQKKN---FFTGEDIKTLFSYSKTETCLTYEL 672
>At3g19210 [L] KOG0390 DNA repair protein SNF2 family
Length = 688
Score = 322 bits (826), Expect = 1e-87
Identities = 205/566 (36%), Positives = 298/566 (52%), Gaps = 58/566 (10%)
Query: 251 SIKDPLIMNKTENHKVSVIVDPLLSKTLRPHQREGVKFLYDCVMNMVHTKGDESMILERD 310
++KD L+ N T +++V +L K LRPHQREGV+F++DCV L
Sbjct: 55 NVKD-LLSNVT-----TIMVHSVLVKFLRPHQREGVQFMFDCVSG-----------LHGS 97
Query: 311 DDIKGCLLADEMGLGKXXXXXXXXXXXXKQTPYPTIINQRGVTLAGEISKVLIVCPVTLI 370
+I GC+LAD+MGLGK T T++ Q G + K +IV P +L+
Sbjct: 98 ANINGCILADDMGLGKTLQSI---------TLLYTLLCQ-GFDGTPMVKKAIIVTPTSLV 147
Query: 371 GNWKKEFKKWLPMNRIGVLTLHSRNSPTEDKAQVRSFLKVPRTYQVLIVGYEKLLSIKDE 430
NW+ E KKW+ +RI ++ L ++ + + + SF + QVLI+ YE +
Sbjct: 148 SNWEAEIKKWVG-DRIQLIAL-CESTRDDVLSGIDSFTRPRSALQVLIISYETFRMHSSK 205
Query: 431 LQNEKRNLDLVICDEGHRLKNKDSKILKVLQSLDIEKKIVLSGTPIQNDLEEFYTIIDFI 490
+ + DL+ICDE HRLKN + + L SL +++++LSGTP+QNDLEEF+ +++F
Sbjct: 206 FC-QSESCDLLICDEAHRLKNDQTLTNRALASLTCKRRVLLSGTPMQNDLEEFFAMVNFT 264
Query: 491 NPGILGSFGRFKREYILPIARSRDVNAKQNQTLVEQGLLRSDQLIEITKRFILRRTNEIL 550
NPG LG F+ Y PI R+ A + + + RS +L +FILRRTN +L
Sbjct: 265 NPGSLGDAAHFRHYYEAPIICGREPTATEEEKNLAAD--RSAELSSKVNQFILRRTNALL 322
Query: 551 QQYLPPRTDLIIFCKPTAEQVEAFHKILTEGQLN---FSNMTFNSSLGLITLFKKICNST 607
+LPP+ ++ CK T Q ++ ++ L N L IT KK+CN
Sbjct: 323 SNHLPPKIIEVVCCKMTTLQSTLYNHFISSKNLKRALADNAKQTKVLAYITALKKLCNHP 382
Query: 608 RLIKTD--------------------PYYEERLSQVQXXXXXXXXXXXXLRILLSLLHEL 647
+LI + R + +L LL L
Sbjct: 383 KLIYDTIKSGNPGTVGFENCLEFFPAEMFSGRSGAWTGGDGAWVELSGKMHVLSRLLANL 442
Query: 648 KTKTDEKVVVISNYTQTLDIIEGHCSSEGYTSARLDGSTATKTRDQIVTSFNNDPS--IF 705
+ KTD+++V++SNYTQTLD+ C Y RLDGST R ++V NDP+ F
Sbjct: 443 RRKTDDRIVLVSNYTQTLDLFAQLCRERRYPFLRLDGSTTISKRQKLVNRL-NDPTKDEF 501
Query: 706 VFLLSAKSGGVGLNLIGASRLVLFDNDWNPSIDLQAMSRIHRDGQRRPCFIYRLVTTGCI 765
FLLS+K+GG GLNLIGA+RLVLFD DWNP+ D QA +R+ RDGQ++ ++YR ++TG I
Sbjct: 502 AFLLSSKAGGCGLNLIGANRLVLFDPDWNPANDKQAAARVWRDGQKKRVYVYRFLSTGTI 561
Query: 766 DEKILQRQLMKIALSKKFLDSATDQS 791
+EK+ QRQ+ K L K TD S
Sbjct: 562 EEKVYQRQMSKEGLQKVIQHEQTDNS 587
>CE23323 [L] KOG0390 DNA repair protein SNF2 family
Length = 751
Score = 261 bits (666), Expect = 5e-69
Identities = 175/483 (36%), Positives = 258/483 (53%), Gaps = 63/483 (13%)
Query: 362 LIVCPVTLIGNWKKEFKKWLPMNRIGVLTLHSRNSPTEDKAQVRSFLKVPRTYQVLIVGY 421
LI+ P +L+ NWK EF KW + R + + N T ++ ++ + +Y +
Sbjct: 188 LIIVPSSLVNNWKAEFDKWWRLMRFPAVIALTANDITTYQSTIKLMPYLVISYDLAQRHV 247
Query: 422 EKLLSIKDELQNEKRNLDLVICDEGHRLKNKDSKILKVLQSLDIEKKIVLSGTPIQNDLE 481
EKL I+ D+++CDEGH+LKN D K+ K L SL+I ++++L+GTP+QND E
Sbjct: 248 EKLKIIR---------FDVMVCDEGHKLKNLDGKLRKTLLSLEIPRRLILTGTPMQNDFE 298
Query: 482 EFYTIIDFINPGILGSFGRFKREYILPIARSRDVNAKQNQTLVEQGLLRSDQLIEITKRF 541
EFY+++DF+ P + GS F++ D R +QL E+
Sbjct: 299 EFYSLLDFVRPSVFGSIVEFRK-------MCSD---------------RPEQLNELIDEC 336
Query: 542 ILRRT-NEILQQYLPPRTDLIIFCKPTAEQVEAFHKILTEGQLNFSNMTFNSSLGLITLF 600
+LRRT ++ ++LP + + I+FC + Q +I + +L LI
Sbjct: 337 MLRRTAADVDLKHLPEKHEYILFCAASPIQKHVHSEI--------CDYMTGDALSLIFFA 388
Query: 601 KKICNSTRLI------KTDPYYEERLSQVQXXXXXXXXXXXXLR---ILLSLLHELK--T 649
+++ N +L+ KT+ + S + ++ L +L+ +K
Sbjct: 389 RQLANHPKLLLDNLREKTEKSKAHKHSPLLLAFDGAHMPRGGVKESGKLTALVDMIKCFR 448
Query: 650 KTDEKVVVISNYTQTLDIIEGHCSSEGYTSARLDGSTATKTRDQIVTSFNN--DPSIFVF 707
E V++SNY +TLD+I+ C + RLDG T R ++V +FN+ DPS +F
Sbjct: 449 LLQECTVIVSNYIETLDMIQQLCEYLNFKVLRLDGKTQVPDRQKLVRTFNDHRDPS-NIF 507
Query: 708 LLSAKSGGVGLNLIGASRLVLFDNDWNPSIDLQAMSRIHRDGQRRPCFIYRLVTTGCIDE 767
LLS K+GGVGLNLIGASRLVLFD+DWNP+ D QAM+RI RDGQ RPC IYRL+TTG I+E
Sbjct: 508 LLSTKAGGVGLNLIGASRLVLFDSDWNPANDQQAMARIWRDGQVRPCHIYRLITTGTIEE 567
Query: 768 KILQRQLMKIALSKKFLDSATDQSKNDDDL--FQQEELKDLFTINLS-TLSNTHDLI-CN 823
K+LQRQ+ K L D + D + F E+LKD+FT S T NTHDL C
Sbjct: 568 KMLQRQIKKTGLG-----CVIDAIEVGDTIATFTDEDLKDIFTFTGSATECNTHDLCECP 622
Query: 824 CSG 826
C G
Sbjct: 623 CDG 625
>ECU09g0410 [KL] KOG0387 Transcription-coupled repair protein CSB/RAD26
(contains SNF2 family DNA-dependent ATPase domain)
Length = 695
Score = 246 bits (627), Expect = 2e-64
Identities = 179/535 (33%), Positives = 267/535 (49%), Gaps = 79/535 (14%)
Query: 270 VDPLLSKTLRPHQREGVKFLYDCVMNMVHTKGDESMILERDDDIKGCLLADEMGLGKXXX 329
V L +L P+Q++GV+++ + L RD+ KG +LAD+MGLGK
Sbjct: 143 VPGFLWSSLFPYQQDGVRWM---------------LRLYRDE--KGGVLADDMGLGKTIQ 185
Query: 330 XXXXXXXXXKQTPYPTIINQRGVTLAGEISKVLIVCPVTLIGNWKKEFKKWLPMNRIGVL 389
I+ + + +SK LI+CP T++ W E+K++ P RI
Sbjct: 186 ---------------VIVFLGALLHSRVVSKALILCPATIVSQWMDEWKRFYPFVRIFF- 229
Query: 390 TLHSRNSPTEDKAQVRSFLKVPRTYQVLIVGYEKLLS-IKDELQNEKRNLDLVICDEGHR 448
P ED V ++ YEK + +K+ L D++I DEGHR
Sbjct: 230 -----GFPNED------------CEGVYLMSYEKFKAGVKNFLW------DVLILDEGHR 266
Query: 449 LKNKDSKILKVLQSLDIEKKIVLSGTPIQNDLEEFYTIIDFINPGILGSFGRFKREYILP 508
+KNK+++I ++ + VLSGTPIQN+L E ++I DF+NPG+LGS F E+
Sbjct: 267 IKNKNAQITLSVKKARSRGRFVLSGTPIQNNLGELWSIFDFVNPGLLGSHTSFNEEFEEV 326
Query: 509 IARSRDVNAKQNQTLVEQGLLRSDQLIEITKRFILRRTNEILQQYLPPRTDLIIFCKPTA 568
I R NA Q VE+ S L + + +ILRRT + LP + D I+FC T
Sbjct: 327 IRRGGYRNASNLQ--VEKAYRHSLMLRSLIEPYILRRTKSQVSHKLPSKEDKIVFCSLTP 384
Query: 569 EQVEAFHKILTEGQLNFSNMTFNSSLGLITLFKKICNSTRL-----IKTDPYYEERLSQV 623
Q+E ++++L + + L I++ +K+CN RL + EE S
Sbjct: 385 AQIELYNRVLESKHIMKVLTGKANLLSGISMLRKVCNHPRLLFPRKLGVSEDCEEEASDE 444
Query: 624 Q------------XXXXXXXXXXXXLRILLSLLHELKTKTDEKVVVISNYTQTLDIIEGH 671
+ ++IL+ LL + +++ KV+V S + LDIIE
Sbjct: 445 KNGEDEALELPGADVSYDLVSSSCKIKILVDLLKKWRSE-GNKVLVFSQTIRMLDIIE-R 502
Query: 672 CSSEGYTSARLDGSTATKTRDQIVTSFNNDPSIFVFLLSAKSGGVGLNLIGASRLVLFDN 731
C + YT R+DG T T +R +V FN D +F+FLL+ K GG+GLNL GASR+V++D
Sbjct: 503 CVRK-YTYLRMDGRTPTSSRPGLVDRFNEDEDVFLFLLTTKVGGLGLNLTGASRIVIYDP 561
Query: 732 DWNPSIDLQAMSRIHRDGQRRPCFIYRLVTTGCIDEKILQRQLMKIALSKKFLDS 786
DWNPS D QA R R GQ++ IYR V I+EK+ Q+Q+ K L KK L +
Sbjct: 562 DWNPSTDTQAKERAWRYGQKKGVEIYRFVCKDTIEEKVYQKQIFKDLLGKKVLSN 616
>Hs4557565 [KL] KOG0387 Transcription-coupled repair protein CSB/RAD26 (contains
SNF2 family DNA-dependent ATPase domain)
Length = 1493
Score = 236 bits (603), Expect = 9e-62
Identities = 165/549 (30%), Positives = 266/549 (48%), Gaps = 49/549 (8%)
Query: 270 VDPLLSKTLRPHQREGVKFLYDCVMNMVHTKGDESMILERDDDIKGCLLADEMGLGKXXX 329
V L K L +Q+ GV++L++ G +L DEMGLGK
Sbjct: 499 VPGFLFKKLFKYQQTGVRWLWELHCQQA-----------------GGILGDEMGLGKTIQ 541
Query: 330 XXXXXXXXXKQTPYPTIINQRGVTLAGE-ISKVLIVCPVTLIGNWKKEFKKWLPMNRIGV 388
I RG E + +IVCP T++ W KEF W P R+ +
Sbjct: 542 IIAFLAGLSYSK-----IRTRGSNYRFEGLGPTVIVCPTTVMHQWVKEFHTWWPPFRVAI 596
Query: 389 LTLHSRNSPTEDKAQVRSFLKVPRTYQVLIVGYEKLLSIKDELQNEKRNLDLVICDEGHR 448
L H S T K ++ V + +LI Y + ++D++ + + VI DEGH+
Sbjct: 597 L--HETGSYTHKKEKL--IRDVAHCHGILITSYSYIRLMQDDIS--RYDWHYVILDEGHK 650
Query: 449 LKNKDSKILKVLQSLDIEKKIVLSGTPIQNDLEEFYTIIDFINPGILGSFGRFKREYILP 508
++N ++ + + +I+LSG+P+QN+L E +++ DFI PG LG+ F ++ +P
Sbjct: 651 IRNPNAAVTLACKQFRTPHRIILSGSPMQNNLRELWSLFDFIFPGKLGTLPVFMEQFSVP 710
Query: 509 IARSRDVNAKQNQTLVEQGLLRSDQLIEITKRFILRRTNEILQQYL--PPRTDLIIFCKP 566
I NA Q V+ + L + ++LRR ++ L P + + ++FC+
Sbjct: 711 ITMGGYSNASPVQ--VKTAYKCACVLRDTINPYLLRRMKSDVKMSLSLPDKNEQVLFCRL 768
Query: 567 TAEQVEAFHKILTEGQL-NFSNMTFNSSLGLITLFKKICNSTRLIKTDPYY-----EERL 620
T EQ + + + ++ N GLI L +KICN L P ++ L
Sbjct: 769 TDEQHKVYQNFVDSKEVYRILNGEMQIFSGLIAL-RKICNHPDLFSGGPKNLKGLPDDEL 827
Query: 621 SQVQXXXXXXXXXXXXLRILLSLLHELKTKTDEKVVVISNYTQTLDIIEGHCSSEGYTSA 680
+ Q + LL + H K ++V++ S Q LDI+E ++ YT
Sbjct: 828 EEDQFGYWKRSGKMIVVESLLKIWH----KQGQRVLLFSQSRQMLDILEVFLRAQKYTYL 883
Query: 681 RLDGSTATKTRDQIVTSFNNDPSIFVFLLSAKSGGVGLNLIGASRLVLFDNDWNPSIDLQ 740
++DG+T +R ++T +N D SIFVFLL+ + GG+G+NL GA+R+V++D DWNPS D Q
Sbjct: 884 KMDGTTTIASRQPLITRYNEDTSIFVFLLTTRVGGLGVNLTGANRVVIYDPDWNPSTDTQ 943
Query: 741 AMSRIHRDGQRRPCFIYRLVTTGCIDEKILQRQLMKIALSKKFLDSATDQSKNDDDLFQQ 800
A R R GQ++ +YRL+T G I+EKI RQ+ K+FL + + F+
Sbjct: 944 ARERAWRIGQKKQVTVYRLLTAGTIEEKIYHRQIF-----KQFLTNRVLKDPKQRRFFKS 998
Query: 801 EELKDLFTI 809
+L +LFT+
Sbjct: 999 NDLYELFTL 1007
>At2g18760 [KL] KOG0387 Transcription-coupled repair protein CSB/RAD26
(contains SNF2 family DNA-dependent ATPase domain)
Length = 1187
Score = 220 bits (561), Expect = 7e-57
Identities = 155/526 (29%), Positives = 246/526 (46%), Gaps = 66/526 (12%)
Query: 315 GCLLADEMGLGKXXXXXXXXXXXXKQTPYPTIINQRGVTLAGEISKVLIVCPVTLIGNWK 374
G ++ DEMGLGK Y I I+CPVTL+ W+
Sbjct: 405 GGIIGDEMGLGKTIQVLSFLGSLHFSKMYKPSI---------------IICPVTLLRQWR 449
Query: 375 KEFKKWLPMNRIGVL------TLHSRNSPTEDKAQVRSFLKVPRTYQ------------- 415
+E +KW P + +L + H + ++ S V ++
Sbjct: 450 REAQKWYPDFHVEILHDSAQDSGHGKGQGKASESDYDSESSVDSDHEPKSKNTKKWDSLL 509
Query: 416 ---------VLIVGYEKLLSIKDELQNEK-RNLD--LVICDEGHRLKNKDSKILKVLQSL 463
+LI YE+L LQ EK N++ + DEGHR++N +S I V + L
Sbjct: 510 NRVLNSESGLLITTYEQL-----RLQGEKLLNIEWGYAVLDEGHRIRNPNSDITLVCKQL 564
Query: 464 DIEKKIVLSGTPIQNDLEEFYTIIDFINPGILGSFGRFKREYILPIARSRDVNAKQNQTL 523
+I+++G PIQN L E +++ DF+ PG LG F+ E+ +PI NA Q
Sbjct: 565 QTVHRIIMTGAPIQNKLTELWSLFDFVFPGKLGVLPVFEAEFSVPITVGGYANASPLQ-- 622
Query: 524 VEQGLLRSDQLIEITKRFILRRTNEILQQYLPPRTDLIIFCKPTAEQVEAFHKILTEGQL 583
V + L ++ ++LRR + +L +T+ ++FC T EQ + L ++
Sbjct: 623 VSTAYRCAVVLRDLIMPYLLRRMKADVNAHLTKKTEHVLFCSLTVEQRSTYRAFLASSEV 682
Query: 584 NFSNMTFNSSLGLITLFKKICNSTRLIKTDPYYEERLSQVQXXXXXXXXXXXXLRILLSL 643
+SL I + +KICN L+ ER Q ++++ +
Sbjct: 683 EQIFDGNRNSLYGIDVMRKICNHPDLL-------EREHSHQNPDYGNPERSGKMKVVAEV 735
Query: 644 LHELKTKTDEKVVVISNYTQTLDIIEGHCSSEGYTSARLDGSTATKTRDQIVTSFNNDPS 703
L K + +V++ S Q LDI+E + Y+ R+DG T K R ++ FNN
Sbjct: 736 LKVWK-QQGHRVLLFSQTQQMLDILESFLVANEYSYRRMDGLTPVKQRMALIDEFNNSED 794
Query: 704 IFVFLLSAKSGGVGLNLIGASRLVLFDNDWNPSIDLQAMSRIHRDGQRRPCFIYRLVTTG 763
+FVF+L+ K GG+G NL GA+R+++FD DWNPS D+QA R R GQ++ +YRL+T G
Sbjct: 795 MFVFVLTTKVGGLGTNLTGANRVIIFDPDWNPSNDMQARERAWRIGQKKDVTVYRLITRG 854
Query: 764 CIDEKILQRQLMKIALSKKFLDSATDQSKNDDDLFQQEELKDLFTI 809
I+EK+ RQ+ K L+ K L + + F+ ++KDLF +
Sbjct: 855 TIEEKVYHRQIYKHFLTNKILKNPQQRR-----FFKARDMKDLFIL 895
>YJR035w [KL] KOG0387 Transcription-coupled repair protein CSB/RAD26
(contains SNF2 family DNA-dependent ATPase domain)
Length = 1085
Score = 216 bits (551), Expect = 1e-55
Identities = 172/552 (31%), Positives = 258/552 (46%), Gaps = 80/552 (14%)
Query: 315 GCLLADEMGLGKXXXXXXXXXXXXKQTPYPTIINQRGVTLAGEISKVLIVCPVTLIGNWK 374
G ++ DEMGLGK + ++ G+ L G VLIVCP T++ W
Sbjct: 317 GGIIGDEMGLGKTIQVIA----------FIAALHHSGL-LTGP---VLIVCPATVMKQWC 362
Query: 375 KEFKKWLPMNRIGVLTLHS-----------------------------------RNSPTE 399
EF+ W P R + LHS +NS
Sbjct: 363 NEFQHWWPPLR--TVILHSMGSGMASDQKFKMDENDLENLIMNSKPSDFSYEDWKNSTRT 420
Query: 400 DKAQVRSFL------KVPRTYQVLIVGYEKLLSIKDELQNEKRNLDLVICDEGHRLKNKD 453
KA S+ KV +LI Y L D+L K + DEGH+++N D
Sbjct: 421 KKALESSYHLDKLIDKVVTDGHILITTYVGLRIHSDKLLKVK--WQYAVLDEGHKIRNPD 478
Query: 454 SKILKVLQSLDIEKKIVLSGTPIQNDLEEFYTIIDFINPGILGSFGRFKREYILPIARSR 513
S+I + L +I+LSGTPIQN+L E +++ DFI PG LG+ F++++++PI
Sbjct: 479 SEISLTCKKLKTHNRIILSGTPIQNNLTELWSLFDFIFPGKLGTLPVFQQQFVIPINIGG 538
Query: 514 DVNAKQNQTLVEQGLLRSDQLIEITKRFILRRTNEILQQYLPPRTDLIIFCKPTAEQVEA 573
NA Q V+ G + L ++ ++LRR + + LP + ++++FCK T Q
Sbjct: 539 YANATNIQ--VQTGYKCAVALRDLISPYLLRRVKADVAKDLPQKKEMVLFCKLTKYQRSK 596
Query: 574 FHKILTEGQLNFSNMTFNSSLGLITLFKKICNSTRLIKTDPYYEERLSQVQXXXXXXXXX 633
+ + L LN + L I + +KICN L+ D +
Sbjct: 597 YLEFLHSSDLNQIQNGKRNVLFGIDILRKICNHPDLLDRDT----KRHNPDYGDPKRSGK 652
Query: 634 XXXLRILLSLLHELKTKTDEKVVVISNYTQTLDIIEGHCSSEG-----YTSARLDGSTAT 688
++ LL L H K K ++ + Q LDI+E S++ R+DG+T
Sbjct: 653 MQVVKQLLLLWH----KQGYKALLFTQSRQMLDILEEFISTKDPDLSHLNYLRMDGTTNI 708
Query: 689 KTRDQIVTSFNNDPSIFVFLLSAKSGGVGLNLIGASRLVLFDNDWNPSIDLQAMSRIHRD 748
K R +V FNN+ S VFLL+ + GG+G+NL GA+R+++FD DWNPS D+QA R R
Sbjct: 709 KGRQSLVDRFNNE-SFDVFLLTTRVGGLGVNLTGANRIIIFDPDWNPSTDMQARERAWRI 767
Query: 749 GQRRPCFIYRLVTTGCIDEKILQRQLMKIALSKKFLDSATDQSKNDDDLFQQEELKDLFT 808
GQ+R IYRL+ G I+EKI RQ+ K L+ + L TD + F+ EL DLF+
Sbjct: 768 GQKREVSIYRLMVGGSIEEKIYHRQIFKQFLTNRIL---TDPKQK--RFFKIHELHDLFS 822
Query: 809 INLSTLSNTHDL 820
+ +T +L
Sbjct: 823 LGGENGYSTEEL 834
>At5g44800 [R] KOG0383 Predicted helicase
Length = 2228
Score = 211 bits (537), Expect = 4e-54
Identities = 141/502 (28%), Positives = 246/502 (48%), Gaps = 60/502 (11%)
Query: 314 KGCLLADEMGLGKXXXXXXXXXXXXKQTPYPTIINQRGVTLAGEISKVLIVCPVTLIGNW 373
K +LADEMGLGK + G L++ P++ + NW
Sbjct: 694 KNVILADEMGLGKTVSASAFLSSLYFEF--------------GVARPCLVLVPLSTMPNW 739
Query: 374 KKEFKKWLPMNRIGVLTLHSRNSPTEDKAQVRSF----------LKVPRTYQ--VLIVGY 421
EF W P+ + V+ H + +A +R + K P +Y+ VL+ Y
Sbjct: 740 LSEFSLWAPL--LNVVEYHGS---AKGRAIIRDYEWHAKNSTGTTKKPTSYKFNVLLTTY 794
Query: 422 EKLLSIKDELQNEKRNLDLVICDEGHRLKNKDSKILKVLQSLDIEKKIVLSGTPIQNDLE 481
E +L+ L+ ++++ DEGHRLKN +SK+ +L + + +++L+GTP+QN++
Sbjct: 795 EMVLADSSHLRGVP--WEVLVVDEGHRLKNSESKLFSLLNTFSFQHRVLLTGTPLQNNIG 852
Query: 482 EFYTIIDFINPGILGSFGRFKREYILPIARSRDVNAKQNQTLVEQGLLRSDQLIEITKRF 541
E Y +++F+ P S F+ + D+ + + + ++L ++
Sbjct: 853 EMYNLLNFLQPSSFPSLSSFEERF-------HDLTSAE----------KVEELKKLVAPH 895
Query: 542 ILRRTNEILQQYLPPRTDLIIFCKPTAEQVEAFHKILTEGQLNFSNM----TFNSSLGLI 597
+LRR + Q +PP+T+ ++ + T+ Q E + +LT+ N+ S L ++
Sbjct: 896 MLRRLKKDAMQNIPPKTERMVPVELTSIQAEYYRAMLTKNYQILRNIGKGVAQQSMLNIV 955
Query: 598 TLFKKICNSTRLIKTDPYYEERLSQVQXXXXXXXXXXXXLRILLSLLHELKTKTDEKVVV 657
+K+CN LI P E ++ L +L S+L L K +V++
Sbjct: 956 MQLRKVCNHPYLI---PGTEPESGSLEFLHDMRIKASAKLTLLHSMLKVLH-KEGHRVLI 1011
Query: 658 ISNYTQTLDIIEGHCSSE--GYTSARLDGSTATKTRDQIVTSFNNDPSIFVFLLSAKSGG 715
S T+ LDI+E + + E T R+DGS A R + FN D + FVFLLS ++ G
Sbjct: 1012 FSQMTKLLDILEDYLNIEFGPKTFERVDGSVAVADRQAAIARFNQDKNRFVFLLSTRACG 1071
Query: 716 VGLNLIGASRLVLFDNDWNPSIDLQAMSRIHRDGQRRPCFIYRLVTTGCIDEKILQRQLM 775
+G+NL A ++++D+D+NP D+QAM+R HR GQ + +YRLV ++E+ILQ
Sbjct: 1072 LGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVRASVEERILQLAKK 1131
Query: 776 KIALSKKFLDSATDQSKNDDDL 797
K+ L + F++ + Q + +D L
Sbjct: 1132 KLMLDQLFVNKSGSQKEFEDIL 1153
>SPBC1826.01c [K] KOG0392 SNF2 family DNA-dependent ATPase domain-containing
protein
Length = 635
Score = 209 bits (532), Expect = 2e-53
Identities = 158/546 (28%), Positives = 252/546 (45%), Gaps = 73/546 (13%)
Query: 274 LSKTLRPHQREGVKFLYDCVMNMVHTKGDESMILERDDDIKGCLLADEMGLGKXXXXXXX 333
+S LR +Q+EGV +L +N G +L D+MGLGK
Sbjct: 36 ISADLRKYQQEGVNWL--AFLNKYELHG---------------ILCDDMGLGKTLQTICI 78
Query: 334 XXXXXKQTPYPTIINQRGVTLAGEISKVLIVCPVTLIGNWKKEFKKWLPMNRIGVLTLHS 393
+ + G + LIVCP TL G+W++E + P ++
Sbjct: 79 VASDHYNRQ--KLFEESGSPKFAHVPS-LIVCPSTLAGHWQQELSTYAPFLKVSAYV--- 132
Query: 394 RNSPTEDKAQVRSFLKVPRTYQVLIVGYEKLLSIKDELQNEKRNLDLVICDEGHRLKNKD 453
P ++A++RS +K V++ Y+ + DEL K + + + DEGH +KN
Sbjct: 133 --GPPAERAKIRSKMKKS---DVVVTSYDICRNDVDELV--KIDWNYCVLDEGHVIKNAR 185
Query: 454 SKILKVLQSLDIEKKIVLSGTPIQNDLEEFYTIIDFINPGILGSFGRFKREYILPIARSR 513
+K+ K ++SL +++LSGTPIQN++ E +++ DF+ PG LG+ F+ ++ PIA SR
Sbjct: 186 AKLTKAVKSLRSYHRLILSGTPIQNNVLELWSLFDFLMPGFLGTEKTFQERFVRPIAASR 245
Query: 514 DVNAKQNQTLVEQGLLRSDQLIEITKRFILRRTNEILQQYLPPRTDLIIFCKPTAEQVEA 573
D AK + E+G L + + + F+LRR E + LPP+ +C + Q +
Sbjct: 246 D--AKSSSKERERGTLALEAIHKQVLPFMLRRLKEDVLADLPPKIIQDYYCDMSDLQRKL 303
Query: 574 FHKILTEGQLN--FSNMTFNSSLG-------------LITLFKKICNSTRLIKTDPYYEE 618
+ +++ +N + + G + +K+CN LI T+ + +
Sbjct: 304 LNDFVSQLNINEELEDDETEKTQGTRKKKSQKAHIFQALQYMRKLCNHPALILTEKHPKR 363
Query: 619 RLSQVQXXXXXXXXXXXXLRILLSLLHEL---------------------KTKTDEKVVV 657
Q L+ L +L ++ +V++
Sbjct: 364 NAIVKQLAKENSGLHDLKHAPKLTALGQLLRDCGLGNSSVNSNGIDSALTNAVSEHRVLI 423
Query: 658 ISNYTQTLDIIEG---HCSSEGYTSARLDGSTATKTRDQIVTSFNNDPSIFVFLLSAKSG 714
LD++E + T RLDGS R + VT FNNDPSI V LL+ G
Sbjct: 424 FCQLKDMLDMVEKDLLQATMPDVTYMRLDGSVEPTKRQEAVTKFNNDPSIDVLLLTTHVG 483
Query: 715 GVGLNLIGASRLVLFDNDWNPSIDLQAMSRIHRDGQRRPCFIYRLVTTGCIDEKI--LQR 772
G+GLNL GA ++ ++DWNP DLQAM R HR GQ++ +YRL+T GC++EKI LQR
Sbjct: 484 GLGLNLTGADTVIFVEHDWNPMRDLQAMDRAHRIGQKKVVNVYRLITRGCLEEKIMGLQR 543
Query: 773 QLMKIA 778
M +A
Sbjct: 544 FKMNVA 549
>Hs17454125 [K] KOG0392 SNF2 family DNA-dependent ATPase domain-containing
protein
Length = 1849
Score = 209 bits (532), Expect = 2e-53
Identities = 176/591 (29%), Positives = 265/591 (44%), Gaps = 81/591 (13%)
Query: 260 KTENHKVSVIVDPLLSKTLRPHQREGVKFLYDCVMNMVHTKGDESMILERDDDIKGCLLA 319
K EN+K+ V ++ LR +Q++GV +L +N G +L
Sbjct: 1252 KLENYKIPVPINA----ELRKYQQDGVNWL--AFLNKYKLHG---------------ILC 1290
Query: 320 DEMGLGKXXXXXXXXXXXXKQTPYPTIINQRGVTLAGEISKVLIVCPVTLIGNWKKEFKK 379
D+MGLGK ++ + L+VCP TL G+W E K
Sbjct: 1291 DDMGLGKTLQSICILAGDHCHRAQEYARSKLAECMP---LPSLVVCPPTLTGHWVDEVGK 1347
Query: 380 WLPMNRIGVLTLHSRNSPTEDKAQVRSFLKVPRTYQVLIVGYEKLLSIKDELQNEKRNLD 439
+ + LH PTE ++R +V R + +++ Y+ + + D +N K N
Sbjct: 1348 FCSREYLN--PLHYTGPPTE---RIRLQHQVKR-HNLIVASYDVVRNDIDFFRNIKFNY- 1400
Query: 440 LVICDEGHRLKNKDSKILKVLQSLDIEKKIVLSGTPIQNDLEEFYTIIDFINPGILGSFG 499
I DEGH +KN +K+ K ++ L +I+LSGTPIQN++ E +++ DF+ PG LG+
Sbjct: 1401 -CILDEGHVIKNGKTKLSKAVKQLTANYRIILSGTPIQNNVLELWSLFDFLMPGFLGTER 1459
Query: 500 RFKREYILPIARSRDVNAKQNQTLVEQGLLRSDQLIEITKRFILRRTNEILQQYLPPRTD 559
+F Y PI SRD + + E G+L D L F+LRR E + Q LPP+
Sbjct: 1460 QFAARYGKPILASRDARSSSREQ--EAGVLAMDALHRQVLPFLLRRMKEDVLQDLPPKII 1517
Query: 560 LIIFCKPTAEQVEAFHKIL----------TEGQLNFSNMTFNSSLGL-------ITLFKK 602
+C + QV+ + T S T L + +K
Sbjct: 1518 QDYYCTLSPLQVQLYEDFAKSRAKCDVDETVSSATLSEETEKPKLKATGHVFQALQYLRK 1577
Query: 603 ICNSTRLIKTDPYYE-----ERLSQVQXXXXXXXXXXXXLRILLSLLHEL---------- 647
+CN L+ T + E E+L+ VQ L L LL +
Sbjct: 1578 LCNHPALVLTPQHPEFKTTAEKLA-VQNSSLHDIQHAPKLSALKQLLLDCGLGNGSTSES 1636
Query: 648 ---KTKTDEKVVVISNYTQTLDIIEG-----HCSSEGYTSARLDGSTATKTRDQIVTSFN 699
++++ LDI+E H S Y RLDGS R IV+ FN
Sbjct: 1637 GTESVVAQHRILIFCQLKSMLDIVEHDLLKPHLPSVTYL--RLDGSIPPGQRHSIVSRFN 1694
Query: 700 NDPSIFVFLLSAKSGGVGLNLIGASRLVLFDNDWNPSIDLQAMSRIHRDGQRRPCFIYRL 759
NDPSI V LL+ GG+GLNL GA +V ++DWNP DLQAM R HR GQ+R +YRL
Sbjct: 1695 NDPSIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKRVVNVYRL 1754
Query: 760 VTTGCIDEKILQRQLMKIALSKKFLDSATDQSKNDDDLFQQEELKDLFTIN 810
+T G ++EKI+ Q K+ ++ ++ Q + ++L DLFT++
Sbjct: 1755 ITRGTLEEKIMGLQKFKMNIA----NTVISQENSSLQSMGTDQLLDLFTLD 1801
>At3g06010 [BK] KOG0386 Chromatin remodeling complex SWI/SNF component SWI2
and related ATPases (DNA/RNA helicase superfamily)
Length = 1132
Score = 209 bits (532), Expect = 2e-53
Identities = 144/491 (29%), Positives = 253/491 (51%), Gaps = 39/491 (7%)
Query: 300 KGDESMILERDDDIKGCLLADEMGLGKXXXXXXXXXXXXKQTPYPTIINQRGVTLAGEIS 359
+G + M+ ++++ G +LADEMGLGK ++ +GV
Sbjct: 439 EGLQWMVSLFNNNLNG-ILADEMGLGKTIQTISLIAY---------LLENKGVP-----G 483
Query: 360 KVLIVCPVTLIGNWKKEFKKWLPMNRIGVLTLHSRNSPTEDKAQVRSFLKVPRTYQVLIV 419
LIV P ++ NW EF W+P + + E++ +R + + VLI
Sbjct: 484 PYLIVAPKAVLPNWVNEFATWVPS-----IAAFLYDGRLEERKAIREKIAGEGKFNVLIT 538
Query: 420 GYEKLLSIKDELQNEKRNLDLVICDEGHRLKNKDSKILK-VLQSLDIEKKIVLSGTPIQN 478
Y+ L ++D+ +K +I DEGHRLKN +S + K +L I+++++L+GTPIQN
Sbjct: 539 HYD--LIMRDKAFLKKIEWYYMIVDEGHRLKNHESALAKTLLTGYRIKRRLLLTGTPIQN 596
Query: 479 DLEEFYTIIDFINPGILGSFGRFKREYILPIARSRDVNAKQNQTLVEQGLLRSDQLIEIT 538
L+E +++++F+ P I S F+ + P A +V+ E+ LL +L +
Sbjct: 597 SLQELWSLLNFLLPHIFNSVQNFEEWFNAPFADRGNVSLTD-----EEELLIIHRLHHVI 651
Query: 539 KRFILRRTNEILQQYLPPRTDLIIFCKPTAEQVEAFHKILTEGQLNFSNMTFNS-SLGLI 597
+ FILRR + ++++LP +T +I+ C +A Q + ++ G++ + S SL +
Sbjct: 652 RPFILRRKKDEVEKFLPGKTQVILKCDMSAWQKVYYKQVTDMGRVGLQTGSGKSKSLQNL 711
Query: 598 TL-FKKICNSTRLIKTDPYYEERLSQVQXXXXXXXXXXXXLRILLSLLHELKTKTDEKVV 656
T+ +K CN L Y + ++ +L LL +L+ K +++
Sbjct: 712 TMQLRKCCNHPYLFVGGDYNMWKKPEI-------VRASGKFELLDRLLPKLR-KAGHRIL 763
Query: 657 VISNYTQTLDIIEGHCSSEGYTSARLDGSTATKTRDQIVTSFNN-DPSIFVFLLSAKSGG 715
+ S T+ +D++E + + Y RLDG+T T R ++ FN D F+FLLS ++GG
Sbjct: 764 LFSQMTRLIDVLEIYLTLNDYKYLRLDGTTKTDQRGLLLKQFNEPDSPYFMFLLSTRAGG 823
Query: 716 VGLNLIGASRLVLFDNDWNPSIDLQAMSRIHRDGQRRPCFIYRLVTTGCIDEKILQRQLM 775
+GLNL A +++FD+DWNP +D QA R HR GQ++ ++ LV+ G ++E IL+R
Sbjct: 824 LGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSVEEVILERAKQ 883
Query: 776 KIALSKKFLDS 786
K+ + K + +
Sbjct: 884 KMGIDAKVIQA 894
>YOR304w [K] KOG0385 Chromatin remodeling complex WSTF-ISWI small subunit
Length = 1120
Score = 209 bits (531), Expect = 2e-53
Identities = 151/522 (28%), Positives = 256/522 (48%), Gaps = 63/522 (12%)
Query: 317 LLADEMGLGKXXXXXXXXXXXXKQTPYPTIINQRGVTLAGEISKVLIVCPVTLIGNWKKE 376
+LADEMGLGK Y + Q + G LI+ P + + NW++E
Sbjct: 206 ILADEMGLGKTLQTISFLG-------YLRYVKQ----IEGPF---LIIVPKSTLDNWRRE 251
Query: 377 FKKWLPMNRIGVLTLHSRNSPTEDKAQVRSFLKVPRTYQVLIVGYEKLLSIKDELQNEKR 436
F KW P + VL LH D VR+ + R + VLI YE ++ K+ L+ +
Sbjct: 252 FLKWTP--NVNVLVLHGDKDTRADI--VRNIILEAR-FDVLITSYEMVIREKNALK--RL 304
Query: 437 NLDLVICDEGHRLKNKDSKILKVLQSLDIEKKIVLSGTPIQNDLEEFYTIIDFINPGILG 496
++ DE HR+KN+ S + ++++ + +++++GTP+QN+L E + +++F+ P I G
Sbjct: 305 AWQYIVIDEAHRIKNEQSALSQIIRLFYSKNRLLITGTPLQNNLHELWALLNFLLPDIFG 364
Query: 497 SFGRFKREYILPIARSRDVNAKQNQTLVEQGLLRSDQLIEITKRFILRRTNEILQQYLPP 556
F + N++Q+Q +V Q QL + F+LRR +++ L P
Sbjct: 365 DSELFDEWF-------EQNNSEQDQEIVIQ------QLHSVLNPFLLRRVKADVEKSLLP 411
Query: 557 RTDLIIFCKPTAEQVEAFHKILTEGQLNFSNMTFNSS------LGLITLFKKICNSTRLI 610
+ + ++ T Q++ ++K L E ++ N L ++ +K CN L
Sbjct: 412 KIETNVYVGMTDMQIQ-WYKSLLEKDIDAVNGAVGKREGKTRLLNIVMQLRKCCNHPYLF 470
Query: 611 KT----DPYYEERLSQVQXXXXXXXXXXXXLRILLSLLHELKTKTDEKVVVISNYTQTLD 666
+ PY + + IL LL LK K +V++ S ++ LD
Sbjct: 471 EGAEPGPPYTTDE---------HLIFNSGKMIILDKLLKRLKEK-GSRVLIFSQMSRLLD 520
Query: 667 IIEGHCSSEGYTSARLDGSTATKTRDQIVTSFNNDPSI-FVFLLSAKSGGVGLNLIGASR 725
I+E +C + R+DGST+ + R + + +N S FVFLL+ ++GG+G+NL+ A
Sbjct: 521 ILEDYCYFRDFEYCRIDGSTSHEERIEAIDEYNKPNSEKFVFLLTTRAGGLGINLVTADT 580
Query: 726 LVLFDNDWNPSIDLQAMSRIHRDGQRRPCFIYRLVTTGCIDEKILQRQLMKIALSKKFLD 785
++LFD+DWNP DLQAM R HR GQ++ +YR VT I+EK+++R K+ L + +
Sbjct: 581 VILFDSDWNPQADLQAMDRAHRIGQKKQVHVYRFVTENAIEEKVIERAAQKLRLDQLVIQ 640
Query: 786 SATDQ-----SKNDDDLFQ--QEELKDLFTINLSTLSNTHDL 820
T + + DDL Q K++F S ++ D+
Sbjct: 641 QGTGKKTASLGNSKDDLLDMIQFGAKNMFEKKASKVTVDADI 682
>SPCP25A2.02c [KL] KOG0387 Transcription-coupled repair protein CSB/RAD26
(contains SNF2 family DNA-dependent ATPase domain)
Length = 973
Score = 206 bits (524), Expect = 1e-52
Identities = 159/528 (30%), Positives = 238/528 (44%), Gaps = 63/528 (11%)
Query: 315 GCLLADEMGLGKXXXXXXXXXXXXKQTPYPTIINQRGVTLAGEISK-VLIVCPVTLIGNW 373
G ++ DEMGLGK +G+ K LIVCP TL+ W
Sbjct: 297 GGIIGDEMGLGKTIQIVSFLSSLHH---------------SGKFQKPALIVCPATLMKQW 341
Query: 374 KKEFKKWLPMNRIGVLTLH-----------------SRNSPTEDKAQVR------SFLKV 410
EF W R+ VL S + E K ++ SF +
Sbjct: 342 VNEFHTWWAPLRVVVLHATGSGQRASREKRQYESDASESEAEESKTSIKLRGASSSFHRY 401
Query: 411 PRTY--------QVLIVGYEKLLSIKDELQNEKRNLDLVICDEGHRLKNKDSKILKVLQS 462
+ +LI Y L D + R + DEGH+++N DS+I +
Sbjct: 402 AKNLVESVFTRGHILITTYAGLRIYGDLIL--PREWGYCVLDEGHKIRNPDSEISISCKQ 459
Query: 463 LDIEKKIVLSGTPIQNDLEEFYTIIDFINPGILGSFGRFKREYILPIARSRDVNAKQNQT 522
+ +I+LSGTPIQN+L E + + DF+ PG LG+ F+ ++ LPI NA Q
Sbjct: 460 IRTVNRIILSGTPIQNNLTELWNLFDFVFPGRLGTLPVFQNQFALPINIGGYANASNVQ- 518
Query: 523 LVEQGLLRSDQLIEITKRFILRRTNEILQQYLPPRTDLIIFCKPTAEQVEAFHKILTEGQ 582
V+ + L ++ ++LRR + LP +++ ++FCK T Q +A+ L
Sbjct: 519 -VQTAYKCACMLRDLISPYLLRRMKLDVAADLPKKSEQVLFCKLTPLQRKAYQDFLQGSD 577
Query: 583 LNFSNMTFNSSLGLITLFKKICNSTRLIKTDPYYEERLSQVQXXXXXXXXXXXXLRILLS 642
+ L I + +KICN L+ E L + L+++ +
Sbjct: 578 MQKILNGKRQMLYGIDILRKICNHPDLVT-----REYLLHKEDYNYGDPEKSGKLKVIRA 632
Query: 643 LLHELKTKTDEKVVVISNYTQTLDIIE-GHCSSEGYTSARLDGSTATKTRDQIVTSFNND 701
LL L K + ++ S Q LDI+E G R+DGST+ R +V +FN +
Sbjct: 633 LL-TLWKKQGHRTLLFSQTRQMLDILEIGLKDLPDVHYCRMDGSTSIALRQDLVDNFNKN 691
Query: 702 PSIFVFLLSAKSGGVGLNLIGASRLVLFDNDWNPSIDLQAMSRIHRDGQRRPCFIYRLVT 761
VFLL+ + GG+G+NL GA R++LFD DWNPS D QA R R GQ++ +YRL+T
Sbjct: 692 EYFDVFLLTTRVGGLGVNLTGADRVILFDPDWNPSTDAQARERAWRLGQKKDVVVYRLMT 751
Query: 762 TGCIDEKILQRQLMKIALSKKFLDSATDQSKNDDDLFQQEELKDLFTI 809
G I+EKI RQ+ K L+ K L + F+ +L DLFT+
Sbjct: 752 AGTIEEKIYHRQIFKQFLTNKILKDPKQRR-----FFKMTDLHDLFTL 794
>At5g19310 [BK] KOG0386 Chromatin remodeling complex SWI/SNF component SWI2
and related ATPases (DNA/RNA helicase superfamily)
Length = 1041
Score = 204 bits (520), Expect = 4e-52
Identities = 152/522 (29%), Positives = 259/522 (49%), Gaps = 47/522 (9%)
Query: 300 KGDESMILERDDDIKGCLLADEMGLGKXXXXXXXXXXXXKQTPYPTIINQRGVTLAGEIS 359
+G + M+ ++D G +LADEMGLGK +
Sbjct: 369 EGLQWMVSLYNNDYNG-ILADEMGLGKTIQTIALIAYLLESKDLH--------------G 413
Query: 360 KVLIVCPVTLIGNWKKEFKKWLPMNRIGVLTLHSRNSPTEDKAQVRSFLKVPRTYQVLIV 419
LI+ P ++ NW+ EF W P + L S+ TE +A++ + VLI
Sbjct: 414 PHLILAPKAVLPNWENEFALWAP-SISAFLYDGSKEKRTEIRARIAG-----GKFNVLIT 467
Query: 420 GYEKLLSIKDELQNEKRNLDLVICDEGHRLKNKDSKILKVL-QSLDIEKKIVLSGTPIQN 478
Y+ L ++D+ +K + + +I DEGHRLKN + + K L I+++++L+GTPIQN
Sbjct: 468 HYD--LIMRDKAFLKKIDWNYMIVDEGHRLKNHECALAKTLGTGYRIKRRLLLTGTPIQN 525
Query: 479 DLEEFYTIIDFINPGILGSFGRFKREYILPIARSRDVNAKQNQTLVEQGLLRSDQLIEIT 538
L+E +++++F+ P I S F+ + P A + E+ LL ++L +
Sbjct: 526 SLQELWSLLNFLLPHIFNSIHNFEEWFNTPFAECGSASLTD-----EEELLIINRLHHVI 580
Query: 539 KRFILRRTNEILQQYLPPRTDLIIFCKPTAEQVEAFHKILTEGQ--LNFSNMTFNSSLGL 596
+ F+LRR ++++LP +T +I+ C +A Q + ++ G+ L+ N S L
Sbjct: 581 RPFLLRRKKSEVEKFLPGKTQVILKCDMSAWQKLYYKQVTDVGRVGLHSGNGKSKSLQNL 640
Query: 597 ITLFKKICNSTRLIKTDPYYEERLSQVQXXXXXXXXXXXXLRILLSLLHELKTKTDEKVV 656
+K CN L Y + ++ +L LL +LK K +++
Sbjct: 641 TMQLRKCCNHPYLFVGADYNMCKKPEI-------VRASGKFELLDRLLPKLK-KAGHRIL 692
Query: 657 VISNYTQTLDIIEGHCSSEGYTSARLDGSTATKTRDQIVTSFNN-DPSIFVFLLSAKSGG 715
+ S T+ +D++E + S Y RLDGST T R ++ FN D F+FLLS ++GG
Sbjct: 693 LFSQMTRLIDLLEIYLSLNDYMYLRLDGSTKTDQRGILLKQFNEPDSPYFMFLLSTRAGG 752
Query: 716 VGLNLIGASRLVLFDNDWNPSIDLQAMSRIHRDGQRRPCFIYRLVTTGCIDEKILQRQLM 775
+GLNL A +++FD+DWNP +D QA R HR GQ++ ++ LV+ G I+E IL+R
Sbjct: 753 LGLNLQTADTIIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSIGSIEEVILERAKQ 812
Query: 776 KIALSKKFLDSA---TDQSKNDDDLFQQEELKDLFTINLSTL 814
K+ + K + + T + D ++E L+++ + S+L
Sbjct: 813 KMGIDAKVIQAGLFNTTSTAQD----RREMLEEIMSKGTSSL 850
>YBR245c [K] KOG0385 Chromatin remodeling complex WSTF-ISWI small subunit
Length = 1129
Score = 203 bits (517), Expect = 9e-52
Identities = 146/513 (28%), Positives = 245/513 (47%), Gaps = 69/513 (13%)
Query: 278 LRPHQREGVKFLYDCVMNMVHTKGDESMILERDDDIKGCLLADEMGLGKXXXXXXXXXXX 337
LRP+Q +GV +L N + +LADEMGLGK
Sbjct: 196 LRPYQIQGVNWLVSLHKNKI-----------------AGILADEMGLGKTLQTISFLGYL 238
Query: 338 XKQTPYPTIINQRGVTLAGEISKVLIVCPVTLIGNWKKEFKKWLPMNRIGVLTLHSRNSP 397
P L++ P + + NW +E +W P +L
Sbjct: 239 RYIEKIP--------------GPFLVIAPKSTLNNWLREINRWTPDVNAFIL-----QGD 279
Query: 398 TEDKAQVRSFLKVPRTYQVLIVGYEKLLSIKDELQNEKRNLDLVICDEGHRLKNKDSKIL 457
E++A++ + + V+I YE ++ K L+ K N + +I DE HR+KN++S +
Sbjct: 280 KEERAELIQKKLLGCDFDVVIASYEIIIREKSPLK--KINWEYIIIDEAHRIKNEESMLS 337
Query: 458 KVLQSLDIEKKIVLSGTPIQNDLEEFYTIIDFINPGILGSFGRFKREYILPIARSRDVNA 517
+VL+ +++++GTP+QN+L E + +++F+ P I F + S +
Sbjct: 338 QVLREFTSRNRLLITGTPLQNNLHELWALLNFLLPDIFSDAQDFDDWF------SSESTE 391
Query: 518 KQNQTLVEQGLLRSDQLIEITKRFILRRTNEILQQYLPPRTDLIIFCKPTAEQVEAFHKI 577
+ +V+Q L + + F+LRR ++ L P+ +L ++ ++ Q + + KI
Sbjct: 392 EDQDKIVKQ-------LHTVLQPFLLRRIKSDVETSLLPKKELNLYVGMSSMQKKWYKKI 444
Query: 578 LTEG--QLNFSNMTFNSSLGLITLF---KKICNSTRLI---KTDPYYEERLSQVQXXXXX 629
L + +N SN + S L+ + +K CN L + P Y
Sbjct: 445 LEKDLDAVNGSNGSKESKTRLLNIMMQLRKCCNHPYLFDGAEPGPPY--------TTDEH 496
Query: 630 XXXXXXXLRILLSLLHELKTKTDEKVVVISNYTQTLDIIEGHCSSEGYTSARLDGSTATK 689
L++L LL +LK + +V++ S ++ LDI+E +C Y R+DGSTA +
Sbjct: 497 LVYNAAKLQVLDKLLKKLKEE-GSRVLIFSQMSRLLDILEDYCYFRNYEYCRIDGSTAHE 555
Query: 690 TRDQIVTSFNN-DPSIFVFLLSAKSGGVGLNLIGASRLVLFDNDWNPSIDLQAMSRIHRD 748
R Q + +N D FVFLL+ ++GG+G+NL A +VL+D+DWNP DLQAM R HR
Sbjct: 556 DRIQAIDDYNAPDSKKFVFLLTTRAGGLGINLTSADVVVLYDSDWNPQADLQAMDRAHRI 615
Query: 749 GQRRPCFIYRLVTTGCIDEKILQRQLMKIALSK 781
GQ++ ++RLVT ++EKIL+R K+ L +
Sbjct: 616 GQKKQVKVFRLVTDNSVEEKILERATQKLRLDQ 648
>At2g13370 [K] KOG0384 Chromodomain-helicase DNA-binding protein
Length = 1738
Score = 203 bits (517), Expect = 9e-52
Identities = 158/539 (29%), Positives = 247/539 (45%), Gaps = 64/539 (11%)
Query: 273 LLSKTLRPHQREGVKFLYDCVMNMVHTKGDESMILERDDDIKGCLLADEMGLGKXXXXXX 332
L+ TLR +Q EG+ FL + +N + +LADEMGLGK
Sbjct: 636 LIGGTLRDYQLEGLNFLVNSWLNDTNV-----------------ILADEMGLGKTVQSVS 678
Query: 333 XXXXXXKQTPYPTIINQRGVTLAGEISKVLIVCPVTLIGNWKKEFKKWLPMNRIGVLTLH 392
P L+V P++ + NW KEF+KWLP I V
Sbjct: 679 MLGFLQNTQQIP--------------GPFLVVVPLSTLANWAKEFRKWLPGMNIIVYVGT 724
Query: 393 SRNSPTEDKAQVRSFLKVPRTYQVLIVGYEKLLSIKDELQNEKRNLDLVICDEGHRLKNK 452
+ +K + P + L+ YE +L KD+ K ++ DE HRLKN
Sbjct: 725 RASREVRNKTNDVHKVGRPIKFNALLTTYEVVL--KDKAVLSKIKWIYLMVDEAHRLKNS 782
Query: 453 DSKILKVLQSLDIEKKIVLSGTPIQNDLEEFYTIIDFINPGILGSFGRFKREYILPIARS 512
++++ L + K++++GTP+QN +EE + ++ F++PG + F Y
Sbjct: 783 EAQLYTALLEFSTKNKLLITGTPLQNSVEELWALLHFLDPGKFKNKDEFVENY------- 835
Query: 513 RDVNAKQNQTLVEQGLLRSDQLIEITKRFILRRTNEILQQYLPPRTDLIIFCKPTAEQVE 572
+N + + L + L + ILRR + +++ LPP+ + I+ + + Q +
Sbjct: 836 ------KNLSSFNESELANLHLE--LRPHILRRVIKDVEKSLPPKIERILRVEMSPLQKQ 887
Query: 573 AFHKILTEGQLNFSNMTFN------SSLGLITLFKKICNSTRLIKTDPYYEERLSQVQXX 626
+ IL + NF ++ S L ++ KK CN L ++ +
Sbjct: 888 YYKWIL---ERNFHDLNKGVRGNQVSLLNIVVELKKCCNHPFLFESADHGYGGDINDNSK 944
Query: 627 XXXXXXXXXXLRILLSLLHELKTKTDEKVVVISNYTQTLDIIEGHCSSEGYTSARLDGST 686
L IL LL L+ +T +V++ S + LDI+ + S G+ RLDGST
Sbjct: 945 LDKIILSSGKLVILDKLLVRLR-ETKHRVLIFSQMVRMLDILAEYLSLRGFQFQRLDGST 1003
Query: 687 ATKTRDQIVTSFNNDPSI-FVFLLSAKSGGVGLNLIGASRLVLFDNDWNPSIDLQAMSRI 745
+ R Q + FN S F FLLS ++GG+G+NL A +V+FD+DWNP DLQAMSR
Sbjct: 1004 KAELRQQAMDHFNAPASDDFCFLLSTRAGGLGINLATADTVVIFDSDWNPQNDLQAMSRA 1063
Query: 746 HRDGQRRPCFIYRLVTTGCIDEKILQRQLMKIALSKKFLDSATDQSKNDDDLFQQEELK 804
HR GQ+ IYR VT+ ++E+IL+R A K LD Q N + ++ E K
Sbjct: 1064 HRIGQQEVVNIYRFVTSKSVEEEILER-----AKRKMVLDHLVIQKLNAEGRLEKRETK 1117
>YOR290c [BK] KOG0386 Chromatin remodeling complex SWI/SNF component SWI2 and
related ATPases (DNA/RNA helicase superfamily)
Length = 1703
Score = 202 bits (514), Expect = 2e-51
Identities = 152/539 (28%), Positives = 259/539 (47%), Gaps = 55/539 (10%)
Query: 273 LLSKTLRPHQREGVKFLYDCVMNMVHTKGDESMILERDDDIKGCLLADEMGLGKXXXXXX 332
L+ TL+ +Q +G++++ N H G +LADEMGLGK
Sbjct: 762 LVGGTLKDYQIKGLQWMVSLFNN--HLNG---------------ILADEMGLGKTIQTIS 804
Query: 333 XXXXXXKQTPYPTIINQRGVTLAGEISKVLIVCPVTLIGNWKKEFKKWLPMNRIGVLTLH 392
+ N RG L++ P++ + NW EF KW P R T+
Sbjct: 805 LLTYLYEMK------NIRG--------PYLVIVPLSTLSNWSSEFAKWAPTLR----TIS 846
Query: 393 SRNSPTEDKAQVRSFLKVPRTYQVLIVGYEKLLSIKDELQNEKRNLDLVICDEGHRLKNK 452
+ SP E KA+ + V++ +E + IK+ K +I DEGHR+KN
Sbjct: 847 FKGSPNERKAKQAKIRA--GEFDVVLTTFEYI--IKERALLSKVKWVHMIIDEGHRMKNA 902
Query: 453 DSKILKVLQS-LDIEKKIVLSGTPIQNDLEEFYTIIDFINPGILGSFGRFKREYILPIAR 511
SK+ L + + +++L+GTP+QN+L E + +++F+ P I S F + P A
Sbjct: 903 QSKLSLTLNTHYHADYRLILTGTPLQNNLPELWALLNFVLPKIFNSVKSFDEWFNTPFAN 962
Query: 512 SRDVNAKQNQTLVEQGLLRSDQLIEITKRFILRRTNEILQQYLPPRTDLIIFCKPTAEQV 571
+ + + + E+ LL +L ++ + F+LRR + +++ LP + + ++ CK +A Q
Sbjct: 963 TGGQD--KIELSEEETLLVIRRLHKVLRPFLLRRLKKDVEKELPDKVEKVVKCKMSALQQ 1020
Query: 572 EAFHKILTEGQLNFSNMTFNSSLGL------ITLFKKICNSTRLIKTDPYYEERLSQVQX 625
+ ++L +L + +GL I KKICN + + E++++ +
Sbjct: 1021 IMYQQMLKYRRLFIGDQNNKKMVGLRGFNNQIMQLKKICNHPFVFEE---VEDQINPTRE 1077
Query: 626 XXXXXXXXXXXLRILLSLLHELKTKTDEKVVVISNYTQTLDIIEGHCSSEGYTSARLDGS 685
+L +L +LK T +V++ TQ +DI+E RLDG
Sbjct: 1078 TNDDIWRVAGKFELLDRILPKLKA-TGHRVLIFFQMTQIMDIMEDFLRYINIKYLRLDGH 1136
Query: 686 TATKTRDQIVTSFNNDPSIFV-FLLSAKSGGVGLNLIGASRLVLFDNDWNPSIDLQAMSR 744
T + R +++ FN S ++ F+LS ++GG+GLNL A +++FD DWNP DLQA R
Sbjct: 1137 TKSDERSELLRLFNAPDSEYLCFILSTRAGGLGLNLQTADTVIIFDTDWNPHQDLQAQDR 1196
Query: 745 IHRDGQRRPCFIYRLVTTGCIDEKILQRQLMKIALSKKFLDSATDQSKNDDDLFQQEEL 803
HR GQ+ I RL+TT ++E IL+R K+ + K + + +K+ + +QE L
Sbjct: 1197 AHRIGQKNEVRILRLITTNSVEEVILERAYKKLDIDGKVIQAGKFDNKSTSE--EQEAL 1253
>CE05553 [BK] KOG0386 Chromatin remodeling complex SWI/SNF component SWI2 and
related ATPases (DNA/RNA helicase superfamily)
Length = 1474
Score = 201 bits (512), Expect = 3e-51
Identities = 152/538 (28%), Positives = 269/538 (49%), Gaps = 63/538 (11%)
Query: 300 KGDESMILERDDDIKGCLLADEMGLGKXXXXXXXXXXXXKQTPYPTIINQRGVTLAGEIS 359
KG E M+ ++++ G +LADEMGLGK TI VT E+
Sbjct: 539 KGLEWMVSLYNNNLNG-ILADEMGLGK------------------TIQTISLVTYLMEVK 579
Query: 360 K----VLIVCPVTLIGNWKKEFKKWLPMNRIGVLTLHSRNSPTEDKAQVRSFLKVPRTYQ 415
+ L++ P++ + NW+ EF KW P + ++ ++++ + Q+R +
Sbjct: 580 QNNGPYLVIVPLSTLSNWQNEFAKWAP-SVTTIIYKGTKDARRRVEGQIRK-----GAFN 633
Query: 416 VLIVGYEKLLSIKDELQNEKRNLDLVICDEGHRLKNKDSKILKVLQSL-DIEKKIVLSGT 474
VL+ YE + IK++ K +I DEGHRLKN + K+ +L + +++L+GT
Sbjct: 634 VLMTTYEYV--IKEKALLGKIRWKYMIIDEGHRLKNHNCKLTLMLNGFFHAQHRLLLTGT 691
Query: 475 PIQNDLEEFYTIIDFINPGILGSFGRFKREYILPIARSRDVNAKQNQTLVEQGLLRSDQL 534
P+QN L E + +++F+ P I S G F++ + P A + + + NQ E+ +L +L
Sbjct: 692 PLQNKLPELWALLNFLLPSIFSSCGTFEQWFNAPFATTGE-KVELNQ---EETMLIIRRL 747
Query: 535 IEITKRFILRRTNEILQQYLPPRTDLIIFCKPTAEQVEAFHKILTEGQLNFSNMTFN--S 592
++ + F+LRR + ++ LP +T+ +I C +A Q + ++ + +G L + M+ S
Sbjct: 748 HKVLRPFLLRRLKKEVESQLPDKTEYVIKCDQSALQ-KVIYRHMQKGLLLDAKMSSGARS 806
Query: 593 SLGLITLFKKICNSTRLIKTDPYYEERLSQV----QXXXXXXXXXXXXLRILLSLLHELK 648
+ + +K+CN L P E+ + L +L +L +LK
Sbjct: 807 LMNTVVHLRKLCNHPFLF---PNIEDSCRAYWKVNEVNGTDLMRVAGKLELLDRILPKLK 863
Query: 649 TKTDEKVVVISNYTQTLDIIEGHCSSEGYTSARLDGSTATKTRDQIVTSFNNDPS-IFVF 707
T ++++ T ++I E + YT RLDGST R ++T FN S +F+F
Sbjct: 864 A-TGHRILMFFQMTSMMNIFEDFLNFRRYTYLRLDGSTKPDERGDLLTQFNAPNSDLFLF 922
Query: 708 LLSAKSGGVGLNLIGASRLVLFDNDWNPSIDLQAMSRIHRDGQRRPCFIYRLVTTGCIDE 767
+LS ++GG+GLNL A +++FD+DWNP D+QA R HR GQ++ + RL+T ++E
Sbjct: 923 MLSTRAGGLGLNLQTADTVIIFDSDWNPHQDMQAQDRAHRIGQKKEVRVLRLITANSVEE 982
Query: 768 KILQRQLMKIALSKKFLDSATDQSKN---------------DDDLFQQEELKDLFTIN 810
KIL K+ + +K + + ++ D + ++EE+ D T+N
Sbjct: 983 KILAAARYKLNVDEKVIQAGKFDQRSTGAERKQMLEQIIQADGEEEEEEEVPDDETVN 1040
>YIL126w [BK] KOG0386 Chromatin remodeling complex SWI/SNF component SWI2
and related ATPases (DNA/RNA helicase superfamily)
Length = 1359
Score = 201 bits (511), Expect = 4e-51
Identities = 148/539 (27%), Positives = 258/539 (47%), Gaps = 50/539 (9%)
Query: 264 HKVSVIVDP----LLSKTLRPHQREGVKFLYDCVMNMVHTKGDESMILERDDDIKGCLLA 319
H++ +D L+ TL+ +Q G++++ N H G +LA
Sbjct: 452 HRIKEKIDKQPSILVGGTLKEYQLRGLEWMVSLYNN--HLNG---------------ILA 494
Query: 320 DEMGLGKXXXXXXXXXXXXKQTPYPTIINQRGVTLAGEISKVLIVCPVTLIGNWKKEFKK 379
DEMGLGK + + +I L++ P++ I NW EF+K
Sbjct: 495 DEMGLGKTIQSISLITYLYE--------------VKKDIGPFLVIVPLSTITNWTLEFEK 540
Query: 380 WLPMNRIGVLTLHSRNSPTEDKAQVRSFLKVPRTYQVLIVGYEKLLSIKDELQNEKRNLD 439
W P + T+ + +P + + ++ ++V + VL+ YE + IKD+ K +
Sbjct: 541 WAP----SLNTIIYKGTPNQ-RHSLQHQIRVGN-FDVLLTTYEYI--IKDKSLLSKHDWA 592
Query: 440 LVICDEGHRLKNKDSKI-LKVLQSLDIEKKIVLSGTPIQNDLEEFYTIIDFINPGILGSF 498
+I DEGHR+KN SK+ + +++L+GTP+QN+L E + +++F+ P I S
Sbjct: 593 HMIIDEGHRMKNAQSKLSFTISHYYRTRNRLILTGTPLQNNLPELWALLNFVLPKIFNSA 652
Query: 499 GRFKREYILPIARSRDVNAKQNQTLVEQGLLRSDQLIEITKRFILRRTNEILQQYLPPRT 558
F+ + P A + ++ + E+ LL +L ++ + F+LRR + +++ LP +
Sbjct: 653 KTFEDWFNTPFANTG--TQEKLELTEEETLLIIRRLHKVLRPFLLRRLKKEVEKDLPDKV 710
Query: 559 DLIIFCKPTAEQVEAFHKILTEGQLNFSNMTFNSSLGLITLFKKICNSTRLIKTDPYYEE 618
+ +I CK + Q + + ++L L T ++ G I R I P+ +
Sbjct: 711 EKVIKCKLSGLQQQLYQQMLKHNALFVGAGTEGATKGGIKGLNNKIMQLRKICNHPFVFD 770
Query: 619 RLSQVQXXXXXXXXXXXXLRILLSLLHELKTK---TDEKVVVISNYTQTLDIIEGHCSSE 675
+ V + LL + K + +V++ TQ +DI+E +
Sbjct: 771 EVEGVVNPSRGNSDLLFRVAGKFELLDRVLPKFKASGHRVLMFFQMTQVMDIMEDFLRMK 830
Query: 676 GYTSARLDGSTATKTRDQIVTSFNN-DPSIFVFLLSAKSGGVGLNLIGASRLVLFDNDWN 734
RLDGST T+ R +++ +FN D F FLLS ++GG+GLNL A +++FD DWN
Sbjct: 831 DLKYMRLDGSTKTEERTEMLNAFNAPDSDYFCFLLSTRAGGLGLNLQTADTVIIFDTDWN 890
Query: 735 PSIDLQAMSRIHRDGQRRPCFIYRLVTTGCIDEKILQRQLMKIALSKKFLDSATDQSKN 793
P DLQA R HR GQ+ I RL+TT ++E IL+R + K+ + K + + +K+
Sbjct: 891 PHQDLQAQDRAHRIGQKNEVRILRLITTDSVEEVILERAMQKLDIDGKVIQAGKFDNKS 949
>Hs21914927 [K] KOG0385 Chromatin remodeling complex WSTF-ISWI small subunit
Length = 838
Score = 199 bits (507), Expect = 1e-50
Identities = 167/590 (28%), Positives = 271/590 (45%), Gaps = 88/590 (14%)
Query: 252 IKDPLIMNKTENHKVSVIVDPLLSKTLRPHQREGVKFLYDCVMNMVHTKGDESMILERDD 311
IKD L ++T DP+ +P + K VM +G E + + ++
Sbjct: 183 IKDRL--SETVRQNTKFFFDPVRKCNGQPVPFQQPKHFTGGVMRWYQVEGMEWLRMLWEN 240
Query: 312 DIKGCLLADEMGLGKXXXXXXXXXXXXKQTPYPTIINQRGVTLAGEISKVLIVCPVTLIG 371
I G +LADEMGLGK ++ QRGV L+ P++ +
Sbjct: 241 GING-ILADEMGLGKTVQCIATIA----------LMIQRGVP-----GPFLVCGPLSTLP 284
Query: 372 NWKKEFKKWLPMNRIGVLTLHSRNSPTEDKAQVRSFLKVPRTYQ---VLIVGYEKLLSIK 428
NW EFK++ P + T+ + E + VR+ K T Q V+I +E + +
Sbjct: 285 NWMAEFKRFTP----DIPTMLYHGTQEERQKLVRNIYKRKGTLQIHPVVITSFEIAMRDR 340
Query: 429 DELQNEKRNLDLVICDEGHRLKNKDSKILKVLQSLDIEKKIVLSGTPIQNDLEEFYTIID 488
+ LQ+ +I DEGHR+KN ++++ L+ + + K++L+GTP+QN+L E +++++
Sbjct: 341 NALQH--CYWKYLIVDEGHRIKNMKCRLIRELKRFNADNKLLLTGTPLQNNLSELWSLLN 398
Query: 489 FINPGILGSFGRFKREYILPIAR--SRDVNAKQNQTLVEQGL-----------LRSDQLI 535
F+ P + F+ + + + D+ AK+ + V L L+SD +
Sbjct: 399 FLLPDVFDDLKSFESWFDITSLSETAEDIIAKEREQNVLHMLHQILTPFLLRRLKSDVAL 458
Query: 536 EIT-KRFI-----LRRTNEILQQYLPPRTDLIIFCKPTAEQVEAFH----KILTEGQLNF 585
E+ KR + L + EI + RT +F E +E K T +N+
Sbjct: 459 EVPPKREVVVYAPLSKKQEIFYTAIVNRTIANMFGSSEKETIELSPTGRPKRRTRKSINY 518
Query: 586 S-----------------------------NMTFNSSLGL-----ITLFKKICNSTRLIK 611
S N+ S + L + L +K CN LI+
Sbjct: 519 SKIDDFPNELEKLISQIQPEVDRERAVVEVNIPVESEVNLKLQNIMMLLRKCCNHPYLIE 578
Query: 612 TDPYYEERLSQVQXXXXXXXXXXXXLRILLSLLHELKTKTDEKVVVISNYTQTLDIIEGH 671
Y + ++Q IL +L ELK K KV++ S T LDI+ +
Sbjct: 579 ---YPIDPVTQEFKIDEELVTNSGKFLILDRMLPELK-KRGHKVLLFSQMTSMLDILMDY 634
Query: 672 CSSEGYTSARLDGSTATKTRDQIVTSFNNDPSIFVFLLSAKSGGVGLNLIGASRLVLFDN 731
C + +RLDGS + R++ + SFN DP +F+FL+S ++GG+G+NL A ++++D+
Sbjct: 635 CHLRDFNFSRLDGSMSYSEREKNMHSFNTDPEVFIFLVSTRAGGLGINLTAADTVIIYDS 694
Query: 732 DWNPSIDLQAMSRIHRDGQRRPCFIYRLVTTGCIDEKILQRQLMKIALSK 781
DWNP DLQA R HR GQ +P +YRLVT ID+KI++R K L K
Sbjct: 695 DWNPQSDLQAQDRCHRIGQTKPVVVYRLVTANTIDQKIVERAAAKRKLEK 744
>At1g03750 [KL] KOG0387 Transcription-coupled repair protein CSB/RAD26
(contains SNF2 family DNA-dependent ATPase domain)
Length = 874
Score = 199 bits (507), Expect = 1e-50
Identities = 159/568 (27%), Positives = 250/568 (43%), Gaps = 99/568 (17%)
Query: 278 LRPHQREGVKFLYDCVMNMVHTKGDESMILERDDDIKGCLLADEMGLGKXXXXXXXXXXX 337
L HQREGVKF+Y+ N G +L D+MGLGK
Sbjct: 151 LLEHQREGVKFMYNLYKNN-----------------HGGILGDDMGLGKTIQTIAFLAAV 193
Query: 338 XKQTPYPTIINQRGVTLAGEISKVLIVCPVTLIGNWKKEFKKWLPMNRIGVLTLHSRNSP 397
+ L + VLI+CP ++I NW+ EF +W ++ V H N
Sbjct: 194 YGKDGDAG----ESCLLESDKGPVLIICPSSIIHNWESEFSRWASFFKVSVY--HGSN-- 245
Query: 398 TEDKAQVRSFLKVPRTYQVLIVGYEKLLSIKDELQNEKRNLDLVICDEGHRLKNKDSKIL 457
+ + LK R +VL+ ++ L N ++VI DE HRLKN+ SK+
Sbjct: 246 ---RDMILEKLKA-RGVEVLVTSFDTFRIQGPVLSGI--NWEIVIADEAHRLKNEKSKLY 299
Query: 458 KVLQSLDIEKKIVLSGTPIQNDLEEFYTIIDFINPGILGSFGRFKREYILPIARSRDVNA 517
+ + +K+I L+GT +QN + E + + +++ PG LG+ F+ Y P+ + A
Sbjct: 300 EACLEIKTKKRIGLTGTVMQNKISELFNLFEWVAPGSLGTREHFRDFYDEPLKLGQRATA 359
Query: 518 KQNQTLVEQGLLRSDQLIEITKRFILRRTNE-ILQQYLPPRTDLIIFCK----------- 565
+ V+ R L + ++++LRRT E + + + D ++FC+
Sbjct: 360 PER--FVQIADKRKQHLGSLLRKYMLRRTKEETIGHLMMGKEDNVVFCQMSQLQRRVYQR 417
Query: 566 ---------------PTA-----EQVEAFHKILTEGQL----------NFSNMTFNSSLG 595
P A +Q E +I+ +G + + F L
Sbjct: 418 MIQLPEIQCLVNKDNPCACGSPLKQSECCRRIVPDGTIWSYLHRDNHDGCDSCPFCLVLP 477
Query: 596 LITLFKKICNSTRLIKTDPYYEERLSQVQXXXXXXXXXXXX------------------- 636
+ ++I N LIK +P E +
Sbjct: 478 CLMKLQQISNHLELIKPNPKDEPEKQKKDAEFVSTVFGTDIDLLGGISASKSFMDLSDVK 537
Query: 637 ----LRILLSLLHELKTKTDEKVVVISNYTQTLDIIEGHCSSEGYTSARLDGSTATKTRD 692
+R L L+ +K D K+++ S + LDI+E +GY+ ARLDGST T R
Sbjct: 538 HCGKMRALEKLMASWISKGD-KILLFSYSVRMLDILEKFLIRKGYSFARLDGSTPTNLRQ 596
Query: 693 QIVTSFNNDPSIFVFLLSAKSGGVGLNLIGASRLVLFDNDWNPSIDLQAMSRIHRDGQRR 752
+V FN PS VFL+S K+GG+GLNL+ A+R+V+FD +WNPS DLQA R R GQ+R
Sbjct: 597 SLVDDFNASPSKQVFLISTKAGGLGLNLVSANRVVIFDPNWNPSHDLQAQDRSFRYGQKR 656
Query: 753 PCFIYRLVTTGCIDEKILQRQLMKIALS 780
++RL++ G ++E + RQ+ K LS
Sbjct: 657 HVVVFRLLSAGSLEELVYTRQVYKQQLS 684
>Hs21071058 [K] KOG0385 Chromatin remodeling complex WSTF-ISWI small subunit
Length = 1052
Score = 199 bits (506), Expect = 2e-50
Identities = 141/498 (28%), Positives = 244/498 (48%), Gaps = 57/498 (11%)
Query: 317 LLADEMGLGKXXXXXXXXXXXXKQTPYPTIINQRGVTLAGEISKVLIVCPVTLIGNWKKE 376
+LADEMGLGK P +++ P + + NW E
Sbjct: 202 ILADEMGLGKTLQTISLLGYMKHYRNIP--------------GPHMVLVPKSTLHNWMSE 247
Query: 377 FKKWLPMNRIGVLTLHSRNSPTEDKAQVRSFLK---VPRTYQVLIVGYEKLLSIKDELQN 433
FK+W+P R L DK Q +F++ +P + V + YE L IK++
Sbjct: 248 FKRWVPTLRSVCLI--------GDKEQRAAFVRDVLLPGEWDVCVTSYEML--IKEKSVF 297
Query: 434 EKRNLDLVICDEGHRLKNKDSKILKVLQSLDIEKKIVLSGTPIQNDLEEFYTIIDFINPG 493
+K N ++ DE HR+KN+ SK+ ++++ +++L+GTP+QN+L E +++++F+ P
Sbjct: 298 KKFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNLHELWSLLNFLLPD 357
Query: 494 ILGSFGRFKREYILPIARSRDVNAKQNQTLVEQGLLRSDQLIEITKRFILRRTNEILQQY 553
+ S F + N L +Q L+ ++L + + F+LRR +++
Sbjct: 358 VFNSADDFDSWF------------DTNNCLGDQKLV--ERLHMVLRPFLLRRIKADVEKS 403
Query: 554 LPPRTDLIIFCKPTAEQVEAFHKILTEGQ--LNFSN-MTFNSSLGLITLFKKICNSTRLI 610
LPP+ ++ I+ + Q E + +IL + LN + M L ++ +K CN L
Sbjct: 404 LPPKKEVKIYVGLSKMQREWYTRILMKDIDILNSAGKMDKMRLLNILMQLRKCCNHPYLF 463
Query: 611 ---KTDPYYEERLSQVQXXXXXXXXXXXXLRILLSLLHELKTKTDEKVVVISNYTQTLDI 667
+ P Y + V + +L LL +LK + +V++ S T+ LDI
Sbjct: 464 DGAEPGPPYTTDMHLV--------TNSGKMVVLDKLLPKLKEQ-GSRVLIFSQMTRVLDI 514
Query: 668 IEGHCSSEGYTSARLDGSTATKTRDQIVTSFNNDPSI-FVFLLSAKSGGVGLNLIGASRL 726
+E +C Y RLDG T R + ++N S FVF+LS ++GG+G+NL A +
Sbjct: 515 LEDYCMWRNYEYCRLDGQTPHDERQDSINAYNEPNSTKFVFMLSTRAGGLGINLATADVV 574
Query: 727 VLFDNDWNPSIDLQAMSRIHRDGQRRPCFIYRLVTTGCIDEKILQRQLMKIALSKKFLDS 786
+L+D+DWNP +DLQAM R HR GQ + ++R +T ++E+I++R MK+ L +
Sbjct: 575 ILYDSDWNPQVDLQAMDRAHRIGQTKTVRVFRFITDNTVEERIVERAEMKLRLDSIVIQQ 634
Query: 787 ATDQSKNDDDLFQQEELK 804
+N + + + E L+
Sbjct: 635 GRLVDQNLNKIGKDEMLQ 652
>At2g25170 [R] KOG0383 Predicted helicase
Length = 1359
Score = 199 bits (506), Expect = 2e-50
Identities = 152/576 (26%), Positives = 253/576 (43%), Gaps = 85/576 (14%)
Query: 266 VSVIVDPLLSKTLRPHQREGVKFLYDCVMNMVHTKGDESMILERDDDIKGCLLADEMGLG 325
V + + P + L P+Q EG+ FL H +LADEMGLG
Sbjct: 261 VMIYLFPAIEGLLHPYQLEGLNFLRFSWSKQTHV-----------------ILADEMGLG 303
Query: 326 KXXXXXXXXXXXXKQTPYPTIINQRGVTLAGEISKVLIVCPVTLIGNWKKEFKKWLPMNR 385
K ++ P L++ P++ + NW++EF W P
Sbjct: 304 KTIQSIALLASLFEENLIPH----------------LVIAPLSTLRNWEREFATWAPQMN 347
Query: 386 IGV-----------------LTLHSRNSPTEDKAQVRSFLKVPRT-YQVLIVGYEKLLSI 427
+ + L+ + + Q+ S K R + VL+ YE +
Sbjct: 348 VVMYFGTAQARAVIREHEFYLSKDQKKIKKKKSGQISSESKQKRIKFDVLLTSYEMINLD 407
Query: 428 KDELQNEKRNLDLVICDEGHRLKNKDSKILKVLQSLDIEKKIVLSGTPIQNDLEEFYTII 487
L+ K + +I DEGHRLKNKDSK+ L +I+L+GTP+QN+L+E + ++
Sbjct: 408 SAVLKPIK--WECMIVDEGHRLKNKDSKLFSSLTQYSSNHRILLTGTPLQNNLDELFMLM 465
Query: 488 DFINPGILGSFGRFKREYILPIARSRDVNAKQNQTLVEQGLLRSDQLIEITKRFILRRTN 547
F++ G GS F+ E+ +D+N ++ + +L ++ +LRR
Sbjct: 466 HFLDAGKFGSLEEFQEEF-------KDINQEE----------QISRLHKMLAPHLLRRVK 508
Query: 548 EILQQYLPPRTDLIIFCKPTAEQVEAFHKILTEGQLNFSNMTFNSSLGLITLFKKICNST 607
+ + + +PP+ +LI+ ++ Q E + I T N+ +T G I
Sbjct: 509 KDVMKDMPPKKELILRVDLSSLQKEYYKAIFTR---NYQVLTKKG--GAQISLNNIMMEL 563
Query: 608 RLIKTDPYYEERLSQVQXXXXXXXXXXXXLRILLSLLHELKTKTDE---KVVVISNYTQT 664
R + PY E + V L LL ++ K E +V++ + +
Sbjct: 564 RKVCCHPYMLEGVEPVIHDANEAFKQLLESCGKLQLLDKMMVKLKEQGHRVLIYTQFQHM 623
Query: 665 LDIIEGHCSSEGYTSARLDGSTATKTRDQIVTSFN-NDPSIFVFLLSAKSGGVGLNLIGA 723
LD++E +C+ + + R+DG R + FN + + F FLLS ++GG+G+NL A
Sbjct: 624 LDLLEDYCTHKKWQYERIDGKVGGAERQIRIDRFNAKNSNKFCFLLSTRAGGLGINLATA 683
Query: 724 SRLVLFDNDWNPSIDLQAMSRIHRDGQRRPCFIYRLVTTGCIDEKILQRQLMKIALSKKF 783
++++D+DWNP DLQAM+R HR GQ IYRL+ G I+E+++Q K+ L
Sbjct: 684 DTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIYRLINRGTIEERMMQLTKKKMVLEHLV 743
Query: 784 LDSATDQSKNDDDLFQQEELKDLFTINLSTLSNTHD 819
+ Q+ N QEEL D+ L + D
Sbjct: 744 VGKLKTQNIN------QEELDDIIRYGSKELFASED 773
>At2g28290 [BK] KOG0386 Chromatin remodeling complex SWI/SNF component SWI2 and
related ATPases (DNA/RNA helicase superfamily)
Length = 1339
Score = 199 bits (505), Expect = 2e-50
Identities = 150/555 (27%), Positives = 262/555 (47%), Gaps = 62/555 (11%)
Query: 273 LLSKTLRPHQREGVKFLYDCVMNMVHTKGDESMILERDDDIKGCLLADEMGLGKXXXXXX 332
L+ LR +Q G+++L N H G +LADEMGLGK
Sbjct: 788 LVGGKLREYQMNGLRWLVSLYNN--HLNG---------------ILADEMGLGKTVQMGL 830
Query: 333 XXXXXXKQTPYPTIINQRGVTLAGEISKVLIVCPVTLIGNWKKEFKKWLPMNRIGVLTLH 392
K ++I T + L+V P +++ W+ E W P + +
Sbjct: 831 G-----KTVQVISLICYLMET-KNDRGPFLVVVPSSVLPGWQSEINFWAP----SIHKIV 880
Query: 393 SRNSPTEDKAQVRSFLKVPRTYQVLIVGYEKLLSIKDELQNEKRNLDLVICDEGHRLKNK 452
+P E + + + V + + VL+ YE L++ D + K + +I DEGHR+KN
Sbjct: 881 YCGTPDERRKLFKEQI-VHQKFNVLLTTYEYLMNKHDRPKLSKIHWHYIIIDEGHRIKNA 939
Query: 453 DSKILKVLQSLDIEKKIVLSGTPIQNDLEEFYTIIDFINPGILGSFGRFKREYILPIARS 512
K+ L+ +++L+GTP+QN+LEE + +++F+ P I S F + + P +
Sbjct: 940 SCKLNADLKHYVSSHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFQSN 999
Query: 513 RDVNAKQNQTLVEQGLLRSDQLIEITKRFILRRTNEILQQYLPPRTDLIIFCKPTAEQVE 572
+ +A ++ E+ LL ++L ++ + F+LRR ++ LP + + +I C+ +A Q +
Sbjct: 1000 GESSALLSE---EENLLIINRLHQVLRPFVLRRLKHKVENELPEKIERLIRCEASAYQ-K 1055
Query: 573 AFHKILTEGQLNFSNMTFNSSLGLITLFKKICNSTRLIKTDPYYEERLSQVQXXXXXXXX 632
K + + + N + + + ICN Y +L +
Sbjct: 1056 LLMKRVEDNLGSIGNAKSRAVHNSVMELRNICNHP--------YLSQLHSEEHFLPPIVR 1107
Query: 633 XXXXLRILLSLLHELKTKTDEKVVVISNYTQTLDIIEGHCSSEGYTSARLDGSTATKTRD 692
L +L +L +LK TD +V+ S T+ LD++E + + +GY RLDG T+ R
Sbjct: 1108 LCGKLEMLDRMLPKLKA-TDHRVLFFSTMTRLLDVMEDYLTLKGYKYLRLDGQTSGGDRG 1166
Query: 693 QIVTSFNNDPS-IFVFLLSAKSGGVGLNLIGASRLVLFDNDWNPSIDLQAMSRIHRDGQR 751
++ FN S F+FLLS ++GGVG+NL A ++LFD DWNP +DLQA +R HR GQ+
Sbjct: 1167 ALIDGFNKSGSPFFIFLLSIRAGGVGVNLQAADTVILFDTDWNPQVDLQAQARAHRIGQK 1226
Query: 752 RPCFIYRLVTTGCIDEKILQRQLMKIALS------------------KKFLDSATDQSKN 793
+ + R T ++E++ K+ ++ K++L+S +SK
Sbjct: 1227 KDVLVLRFETVNSVEEQVRASAEHKLGVANQSITAGFFDNNTSAEDRKEYLESLLRESKK 1286
Query: 794 DDD--LFQQEELKDL 806
++D + + L DL
Sbjct: 1287 EEDAPVLDDDALNDL 1301
>YFR038w [K] KOG0385 Chromatin remodeling complex WSTF-ISWI small subunit
Length = 778
Score = 198 bits (504), Expect = 3e-50
Identities = 156/557 (28%), Positives = 255/557 (45%), Gaps = 84/557 (15%)
Query: 287 KFLYDCVMNMVHTKGDESMILERDDDIKGCLLADEMGLGKXXXXXXXXXXXXKQTPYPTI 346
+ L +C++ +G +I ++ + G +LADEMGLGK +
Sbjct: 215 RLLKNCILKPYQLEGLNWLITLYENGLNG-ILADEMGLGKTVQSIALLAFIYE------- 266
Query: 347 INQRGVTLAGEISKVLIVCPVTLIGNWKKEFKKWLPMNRIGVLTLHSRNSPTEDKAQVRS 406
++ +G L+ P++ + NW EF K+ P + VL + N E A++++
Sbjct: 267 MDTKG--------PFLVTAPLSTLDNWMNEFAKFAP--DLPVLKYYGTNGYKERSAKLKN 316
Query: 407 FLKVPRTYQVLIVGYEKLLSIKDELQNEKRNLDLVICDEGHRLKNKDSKILKVLQSLDIE 466
F K ++I YE +L D + ++ N +I DEGHRLKN + +++K L+ ++
Sbjct: 317 FFKQHGGTGIVITSYEIILRDTDLIMSQ--NWKFLIVDEGHRLKNINCRLIKELKKINTS 374
Query: 467 KKIVLSGTPIQNDLEEFYTIIDFINPGILGSFGRFKREYIL-PIARSRDVNAKQNQTLVE 525
+++L+GTP+QN+L E +++++FI P I F F + + + N++ L+
Sbjct: 375 NRLLLTGTPLQNNLAELWSLLNFIMPDIFADFEIFNKWFDFDSLNLGSGSNSEALNKLIN 434
Query: 526 QGLLRS--DQLIEITKRFILRRTNE-ILQQYLPPRTDLIIFCKPTAEQVEAFHKILTEGQ 582
L ++ L I K F+LRR + +L LPP+ + II C T+ Q E F+K G+
Sbjct: 435 DELQKNLISNLHTILKPFLLRRLKKVVLANILPPKREYIINCPMTSAQ-EKFYKAGLNGK 493
Query: 583 L-----------------NFSNMTFNSSLGLITLFKKICNST---------RLIKTDPYY 616
L + N S+ +K N T L++ D Y
Sbjct: 494 LKKTMFKELIKDFFTLNDEYIGHVSNRSIRDFINYKLSGNETSNTDNKINPTLLQMDKLY 553
Query: 617 EERLSQVQXXXXXXXXXXXXLRIL----------------LSLLHELKT----------- 649
++ L Q++ LR + L+L LKT
Sbjct: 554 KKNL-QMEISNKKLQNMMMQLRQIIDSTFLFYFPYLHPEDLTLETLLKTSGKLQILQKLI 612
Query: 650 ----KTDEKVVVISNYTQTLDIIEGHCSSEGYTSARLDGSTATKTRDQIVTSFNNDPSIF 705
KV++ S + LD+IE C + + R+DGS +TR + FN+
Sbjct: 613 PPLISEGHKVLIYSQFVNMLDLIEDWCDLNSFATFRIDGSVNNETRKDQLEKFNSSKDKH 672
Query: 706 -VFLLSAKSGGVGLNLIGASRLVLFDNDWNPSIDLQAMSRIHRDGQRRPCFIYRLVTTGC 764
+FLLS ++ G+G+NL+GA +VLFD+DWNP +DLQAM R HR GQ P +YRL
Sbjct: 673 NIFLLSTRAAGLGINLVGADTVVLFDSDWNPQVDLQAMDRCHRIGQESPVIVYRLCCDNT 732
Query: 765 IDEKILQRQLMKIALSK 781
I+ IL R K L +
Sbjct: 733 IEHVILTRAANKRNLER 749
>Hs21071044 [K] KOG0385 Chromatin remodeling complex WSTF-ISWI small subunit
Length = 1054
Score = 198 bits (504), Expect = 3e-50
Identities = 155/569 (27%), Positives = 265/569 (46%), Gaps = 88/569 (15%)
Query: 260 KTENHKVSVIVDPLLSK--TLRPHQREGVKFLYDCVMNMVHTKGDESMILERDDDIKGCL 317
KT N + V P K LR +Q G+ +L N V+ +
Sbjct: 163 KTSNVCIRFEVSPSYVKGGPLRDYQIRGLNWLISLYENGVNG-----------------I 205
Query: 318 LADEMGLGKXXXXXXXXXXXXKQTPYPTIINQRGVTLAGEISKVLIVCPVTLIGNWKKEF 377
LADEMGLGK P +++ P + + NW EF
Sbjct: 206 LADEMGLGKTLQTIALLGYLKHYRNIP--------------GPHMVLVPKSTLHNWMNEF 251
Query: 378 KKWLPMNRIGVLTLHSRNSPTEDKAQVRSFLK---VPRTYQVLIVGYEKLLSIKDELQNE 434
K+W+P R+ DK +F++ +P + V + YE + IK++ +
Sbjct: 252 KRWVPSLRVICFV--------GDKDARAAFIRDEMMPGEWDVCVTSYEMV--IKEKSVFK 301
Query: 435 KRNLDLVICDEGHRLKNKDSKILKVLQSLDIEKKIVLSGTPIQNDLEEFYTIIDFINPGI 494
K + ++ DE HR+KN+ SK+ ++++ +++L+GTP+QN+L E + +++F+ P +
Sbjct: 302 KFHWRYLVIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQNNLHELWALLNFLLPDV 361
Query: 495 LGSFGRFKREYILPIARSRDVNAKQNQTLVEQGLLRSDQLIEITKRFILRRTNEILQQYL 554
S F + N +Q LVE+ L + K F+LRR +++ L
Sbjct: 362 FNSADDFDSWFDTK-------NCLGDQKLVER-------LHAVLKPFLLRRIKTDVEKSL 407
Query: 555 PPRTDLIIFCKPTAEQVEAFHKILTEG--QLNFSN-MTFNSSLGLITLFKKICNSTRLI- 610
PP+ ++ I+ + Q E + KIL + LN S M L ++ +K CN L
Sbjct: 408 PPKKEIKIYLGLSKMQREWYTKILMKDIDVLNSSGKMDKMRLLNILMQLRKCCNHPYLFD 467
Query: 611 --KTDPYYEERLSQVQXXXXXXXXXXXXLRILLSLLHELKTKTDEKVVVISNYTQTLDII 668
+ P Y + +L LL +LK + +V++ S T+ LDI+
Sbjct: 468 GAEPGPPY--------TTDEHIVSNSGKMVVLDKLLAKLKEQ-GSRVLIFSQMTRLLDIL 518
Query: 669 EGHCSSEGYTSARLDGSTATKTRD------------QIVTSFNN-DPSIFVFLLSAKSGG 715
E +C GY RLDG T + R+ + + +FN + S F+F+LS ++GG
Sbjct: 519 EDYCMWRGYEYCRLDGQTPHEEREDKFLEVEFLGQREAIEAFNAPNSSKFIFMLSTRAGG 578
Query: 716 VGLNLIGASRLVLFDNDWNPSIDLQAMSRIHRDGQRRPCFIYRLVTTGCIDEKILQRQLM 775
+G+NL A ++L+D+DWNP +DLQAM R HR GQ++P ++RL+T ++E+I++R +
Sbjct: 579 LGINLASADVVILYDSDWNPQVDLQAMDRAHRIGQKKPVRVFRLITDNTVEERIVERAEI 638
Query: 776 KIALSKKFLDSATDQSKNDDDLFQQEELK 804
K+ L + + + L ++E L+
Sbjct: 639 KLRLDSIVIQQGRLIDQQSNKLAKEEMLQ 667
>YPL082c [K] KOG0392 SNF2 family DNA-dependent ATPase domain-containing
protein
Length = 1867
Score = 198 bits (503), Expect = 4e-50
Identities = 163/612 (26%), Positives = 276/612 (44%), Gaps = 94/612 (15%)
Query: 248 DPVSIKDPLIMNKT-ENHKVSVIVDPLLSK----------TLRPHQREGVKFLYDCVMNM 296
DP + + L+ ++ E + ++DP +K TLR +Q++GV +L +N
Sbjct: 1231 DPKGLPEELVASRERERDFIQQMMDPSKAKPFKLPIAIKATLRKYQQDGVNWL--AFLNK 1288
Query: 297 VHTKGDESMILERDDDIKGCLLADEMGLGKXXXXX--XXXXXXXKQTPYPTIINQRGVTL 354
H G +L D+MGLGK ++ Y ++ ++
Sbjct: 1289 YHLHG---------------ILCDDMGLGKTLQTICIIASDQYLRKEDY-----EKTRSV 1328
Query: 355 AGEISKVLIVCPVTLIGNWKKEFKKWLPMNRIGVLTLHSRNSPTEDKAQVRSFLKVPRT- 413
LI+CP +L G+W+ EF ++ P ++ V PT VR L+ +
Sbjct: 1329 ESRALPSLIICPPSLTGHWENEFDQYAPFLKVVVYA----GGPT-----VRLTLRPQLSD 1379
Query: 414 YQVLIVGYEKLLSIKDELQNEKRNLDLVICDEGHRLKNKDSKILKVLQSLDIEKKIVLSG 473
+++ Y+ ++ D K + + DEGH +KN SK+ K ++ + +++L+G
Sbjct: 1380 ADIIVTSYD--VARNDLAVLNKTEYNYCVLDEGHIIKNSQSKLAKAVKEITANHRLILTG 1437
Query: 474 TPIQNDLEEFYTIIDFINPGILGSFGRFKREYILPIARSRDVNAKQNQTLVEQGLLRSDQ 533
TPIQN++ E +++ DF+ PG LG+ F+ + PIA SR N+K + E G+L +
Sbjct: 1438 TPIQNNVLELWSLFDFLMPGFLGTEKMFQERFAKPIAASR--NSKTSSKEQEAGVLALEA 1495
Query: 534 LIEITKRFILRRTNEILQQYLPPRTDLIIFCKPTAEQVEAFHKILTEGQLNFSNMTFNSS 593
L + F+LRR E + LPP+ +C+ + + + T+ Q N +S
Sbjct: 1496 LHKQVLPFMLRRLKEDVLSDLPPKIIQDYYCE-LGDLQKQLYMDFTKKQKNVVEKDIENS 1554
Query: 594 ---------LGLITLFKKICNSTRLIKTDPYYEERLSQVQXXXXXX------XXXXXXLR 638
+ +K+CN L+ + + +L+QVQ L
Sbjct: 1555 EIADGKQHIFQALQYMRKLCNHPALVLSPNH--PQLAQVQDYLKQTGLDLHDIINAPKLS 1612
Query: 639 ILLSLLHEL---------KTKTDE-----------KVVVISNYTQTLDIIEGHCSSE--- 675
L +LL E K D+ + ++ LD++E +
Sbjct: 1613 ALRTLLFECGIGEEDIDKKASQDQNFPIQNVISQHRALIFCQLKDMLDMVENDLFKKYMP 1672
Query: 676 GYTSARLDGSTATKTRDQIVTSFNNDPSIFVFLLSAKSGGVGLNLIGASRLVLFDNDWNP 735
T RLDGS + R ++V FN DPSI LL+ K GG+GLNL GA ++ ++DWNP
Sbjct: 1673 SVTYMRLDGSIDPRDRQKVVRKFNEDPSIDCLLLTTKVGGLGLNLTGADTVIFVEHDWNP 1732
Query: 736 SIDLQAMSRIHRDGQRRPCFIYRLVTTGCIDEKILQRQLMKIALSKKFLDSATDQSKNDD 795
DLQAM R HR GQ++ +YR++T G ++EKI+ Q K+ ++ + +Q +
Sbjct: 1733 MNDLQAMDRAHRIGQKKVVNVYRIITKGTLEEKIMGLQKFKMNIA----STVVNQQNSGL 1788
Query: 796 DLFQQEELKDLF 807
+L DLF
Sbjct: 1789 ASMDTHQLLDLF 1800
>Hs22047300 [K] KOG0384 Chromodomain-helicase DNA-binding protein
Length = 1970
Score = 197 bits (501), Expect = 6e-50
Identities = 149/559 (26%), Positives = 249/559 (43%), Gaps = 93/559 (16%)
Query: 278 LRPHQREGVKFLYDCVMNMVHTKGDESMILERDDDIKGCLLADEMGLGKXXXXXXXXXXX 337
LR +Q EGV +L NM + C+LADEMGLGK
Sbjct: 399 LREYQLEGVNWLLFNWYNM-----------------RNCILADEMGLGKTIQSITFLYE- 440
Query: 338 XKQTPYPTIINQRGVTLAGEISKVLIVCPVTLIGNWKKEFKKWLPMNRIGVLTLHSRNSP 397
+ L G L++ P++ I NW++EF+ W +N V+ H +
Sbjct: 441 --------------IYLKGIHGPFLVIAPLSTIPNWEREFRTWTELN---VVVYHGSQAS 483
Query: 398 TEDKAQVRSFLKVPR--------TYQVLIVGYEKLLSIKDELQNEKRNLDLVICDEGHRL 449
+ K P+ + +I +E +L+ EL+N V+ DE HRL
Sbjct: 484 RRTIQLYEMYFKDPQGRVIKGSYKFHAIITTFEMILTDCPELRNIPWRC--VVIDEAHRL 541
Query: 450 KNKDSKILKVLQSLDIEKKIVLSGTPIQNDLEEFYTIIDFINPGILGSFGRFKREYILPI 509
KN++ K+L+ L+ +D+E K++L+GTP+QN +EE ++++ F+ P S F +E+
Sbjct: 542 KNRNCKLLEGLKMMDLEHKVLLTGTPLQNTVEELFSLLHFLEPSRFPSETTFMQEF---- 597
Query: 510 ARSRDVNAKQNQTLVEQGLLRSDQLIE----ITKRFILRRTNEILQQYLPPRTDLIIFCK 565
G L++++ ++ I K +LRR E +++ L P+ + II +
Sbjct: 598 -----------------GDLKTEEQVQKLQAILKPMMLRRLKEDVEKNLAPKEETIIEVE 640
Query: 566 PTAEQVEAFHKILTE---------GQLNFSNMTFNSSLGLITLFKKICNSTRLIK----- 611
T Q + + IL + GQ N N+ L + +K CN LI
Sbjct: 641 LTNIQKKYYRAILEKNFTFLSKGGGQANVPNL-----LNTMMELRKCCNHPYLINGAEEK 695
Query: 612 -TDPYYEERLSQVQXXXXXXXXXXXXLRILLSLLHELKTKTDEKVVVISNYTQTLDIIEG 670
+ + E ++ +L+ L +V++ S + LDI+E
Sbjct: 696 ILEEFKETHNAESPDFQLQAMIQAAGKLVLIDKLLPKLKAGGHRVLIFSQMVRCLDILED 755
Query: 671 HCSSEGYTSARLDGSTATKTRDQIVTSFNN-DPSIFVFLLSAKSGGVGLNLIGASRLVLF 729
+ Y R+DG R + F+ D FVFLL ++GG+G+NL A ++F
Sbjct: 756 YLIQRRYPYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTAADTCIIF 815
Query: 730 DNDWNPSIDLQAMSRIHRDGQRRPCFIYRLVTTGCIDEKILQRQLMKIALSKKFLDSAT- 788
D+DWNP DLQA +R HR GQ + IYRL+T + ++ + +K+ L K L S +
Sbjct: 816 DSDWNPQNDLQAQARCHRIGQSKSVKIYRLITRNSYEREMFDKASLKLGLDKAVLQSMSG 875
Query: 789 -DQSKNDDDLFQQEELKDL 806
+ + N ++E++DL
Sbjct: 876 RENATNGVQQLSKKEIEDL 894
>At3g06400 [K] KOG0385 Chromatin remodeling complex WSTF-ISWI small subunit
Length = 1057
Score = 196 bits (498), Expect = 1e-49
Identities = 137/495 (27%), Positives = 241/495 (48%), Gaps = 58/495 (11%)
Query: 317 LLADEMGLGKXXXXXXXXXXXXKQTPYPTIINQRGVTLAGEISKVLIVCPVTLIGNWKKE 376
+LADEMGLGK + RG+ ++V P + +GNW E
Sbjct: 211 ILADEMGLGKTLQTISLLAYLHEY---------RGIN-----GPHMVVAPKSTLGNWMNE 256
Query: 377 FKKWLPMNRIGVLTLHSRNSPTEDKAQVRSFLKVPRTYQVLIVGYEKLLSIKDELQNEKR 436
+++ P+ R + +P E++ +R L V + + + +E ++IK++ +
Sbjct: 257 IRRFCPVLR----AVKFLGNP-EERRHIREDLLVAGKFDICVTSFE--MAIKEKTALRRF 309
Query: 437 NLDLVICDEGHRLKNKDSKILKVLQSLDIEKKIVLSGTPIQNDLEEFYTIIDFINPGILG 496
+ +I DE HR+KN++S + K ++ +++++GTP+QN+L E + +++F+ P I
Sbjct: 310 SWRYIIIDEAHRIKNENSLLSKTMRLFSTNYRLLITGTPLQNNLHELWALLNFLLPEIFS 369
Query: 497 SFGRFKREYILPIARSRDVNAKQNQTLVEQGLLRSDQLIEITKRFILRRTNEILQQYLPP 556
S F + ++ + +Q V Q QL ++ + F+LRR +++ LPP
Sbjct: 370 SAETFDEWF--------QISGENDQQEVVQ------QLHKVLRPFLLRRLKSDVEKGLPP 415
Query: 557 RTDLIIFCKPTAEQVEAFHKILTEGQLNFSNMTFNSS--LGLITLFKKICNSTRLIKT-- 612
+ + I+ + Q + ++K L + L N L + +K CN L +
Sbjct: 416 KKETILKVGMSQMQKQ-YYKALLQKDLEAVNAGGERKRLLNIAMQLRKCCNHPYLFQGAE 474
Query: 613 --DPYYEERLSQVQXXXXXXXXXXXXLRILLSLLHELKTKTDEKVVVISNYTQTLDIIEG 670
PY + +L LL +LK + D +V++ S T+ LDI+E
Sbjct: 475 PGPPY---------TTGDHLITNAGKMVLLDKLLPKLKER-DSRVLIFSQMTRLLDILED 524
Query: 671 HCSSEGYTSARLDGSTATKTRDQIVTSFNNDPSI-FVFLLSAKSGGVGLNLIGASRLVLF 729
+ GY R+DG+T RD + ++N S FVFLLS ++GG+G+NL A ++L+
Sbjct: 525 YLMYRGYLYCRIDGNTGGDERDASIEAYNKPGSEKFVFLLSTRAGGLGINLATADVVILY 584
Query: 730 DNDWNPSIDLQAMSRIHRDGQRRPCFIYRLVTTGCIDEKILQRQLMKIALSKKFLDSA-- 787
D+DWNP +DLQA R HR GQ++ ++R T I+EK+++R K+AL +
Sbjct: 585 DSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTESAIEEKVIERAYKKLALDALVIQQGRL 644
Query: 788 ---TDQSKNDDDLFQ 799
+S N D+L Q
Sbjct: 645 AEQKSKSVNKDELLQ 659
>Hs22047966 [K] KOG0384 Chromodomain-helicase DNA-binding protein
Length = 1953
Score = 195 bits (496), Expect = 2e-49
Identities = 149/522 (28%), Positives = 246/522 (46%), Gaps = 74/522 (14%)
Query: 314 KGCLLADEMGLGKXXXXXXXXXXXXKQTPYPTIINQRGVTLAGEISKVLIVCPVTLIGNW 373
+ C+LADEMGLGK +I + V G L++ P++ I NW
Sbjct: 202 QNCILADEMGLGKTIQ---------------SIAFLQEVYNVGIHGPFLVIAPLSTITNW 246
Query: 374 KKEFKKWLPMNRIGVLTLHSRNSPTEDKAQVRSFLK------VPRTYQ--VLIVGYEKLL 425
++EF W MN I H + + Q + K +P Y+ LI +E +L
Sbjct: 247 EREFNTWTEMNTI---VYHGSLASRQMIQQYEMYCKDSRGRLIPGAYKFDALITTFEMIL 303
Query: 426 SIKDELQNEKRNLDLVICDEGHRLKNKDSKILKVLQSLDIEKKIVLSGTPIQNDLEEFYT 485
S EL+ + VI DE HRLKN++ K+L L+ +D+E K++L+GTP+QN +EE ++
Sbjct: 304 SDCPELREIEWRC--VIIDEAHRLKNRNCKLLDSLKHMDLEHKVLLTGTPLQNTVEELFS 361
Query: 486 IIDFINPGILGSFGRFKREYILPIARSRDVNAKQNQTLVEQGLLRSDQLIE----ITKRF 541
++ F+ P S F +++ G L++++ ++ I K
Sbjct: 362 LLHFLEPSQFPSESEFLKDF---------------------GDLKTEEQVQKLQAILKPM 400
Query: 542 ILRRTNEILQQYLPPRTDLIIFCKPTAEQVEAFHKILTEGQLNFSNMTFNSS-------L 594
+LRR E +++ L P+ + II + T Q + + IL + NFS ++ + L
Sbjct: 401 MLRRLKEDVEKNLAPKQETIIEVELTNIQKKYYRAILEK---NFSFLSKGAGHTNMPNLL 457
Query: 595 GLITLFKKICNSTRLI-----KTDPYYEERLSQVQXXXXXXXXXXXXLRILL--SLLHEL 647
+ +K CN LI K + E + +++L LL +L
Sbjct: 458 NTMMELRKCCNHPYLINGAEEKILTEFREACHIIPHDFHLQAMVRSAGKLVLIDKLLPKL 517
Query: 648 KTKTDEKVVVISNYTQTLDIIEGHCSSEGYTSARLDGSTATKTRDQIVTSFNN-DPSIFV 706
K KV++ S + LDI+E + Y R+DG R + F+ D FV
Sbjct: 518 KAG-GHKVLIFSQMVRCLDILEDYLIQRRYLYERIDGRVRGNLRQAAIDRFSKPDSDRFV 576
Query: 707 FLLSAKSGGVGLNLIGASRLVLFDNDWNPSIDLQAMSRIHRDGQRRPCFIYRLVTTGCID 766
FLL ++GG+G+NL A ++FD+DWNP DLQA +R HR GQ + +YRL+T +
Sbjct: 577 FLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKVYRLITRNSYE 636
Query: 767 EKILQRQLMKIALSKKFLDSATDQSKNDDDL--FQQEELKDL 806
++ + +K+ L K L S + + N + F ++E++DL
Sbjct: 637 REMFDKASLKLGLDKAVLQSMSGRDGNITGIQQFSKKEIEDL 678
>7294205 [BK] KOG0386 Chromatin remodeling complex SWI/SNF component SWI2 and
related ATPases (DNA/RNA helicase superfamily)
Length = 1638
Score = 195 bits (496), Expect = 2e-49
Identities = 151/543 (27%), Positives = 270/543 (48%), Gaps = 48/543 (8%)
Query: 274 LSKTLRPHQREGVKFLYDCVMNMVHTKGDESMILERDDDIKGCLLADEMGLGKXXXXXXX 333
++ T+ E + + + KG E ++ ++++ G +LADEMGLGK
Sbjct: 753 IAHTIHEKVVEQASIMVNGTLKEYQIKGLEWLVSLYNNNLNG-ILADEMGLGKTIQTISL 811
Query: 334 XXXXXKQTPYPTIINQRGVTLAGEISKVLIVCPVTLIGNWKKEFKKWLPMNRIGVLTLHS 393
+++++ V + LI+ P++ + NW EF+KW P +GV++
Sbjct: 812 VTY---------LMDRKKV-----MGPYLIIVPLSTLPNWVLEFEKWAPA--VGVVSY-- 853
Query: 394 RNSPTEDKAQVRSFLKVPRTYQVLIVGYEKLLSIKDELQNEKRNLDLVICDEGHRLKNKD 453
+ SP + + +++ ++ + + VL+ YE + IKD+ K +I DEGHR+KN
Sbjct: 854 KGSP-QGRRLLQNQMRATK-FNVLLTTYEYV--IKDKAVLAKIQWKYMIIDEGHRMKNHH 909
Query: 454 SKILKVLQSLDIEK-KIVLSGTPIQNDLEEFYTIIDFINPGILGSFGRFKREYILPIARS 512
K+ +VL + I +++L+GTP+QN L E + +++F+ P I S F++ + P A +
Sbjct: 910 CKLTQVLNTHYIAPYRLLLTGTPLQNKLPELWALLNFLLPSIFKSCSTFEQWFNAPFATT 969
Query: 513 RDVNAKQNQTLVEQGLLRSDQLIEITKRFILRRTNEILQQYLPPRTDLIIFCKPTAEQVE 572
+ + N+ E+ +L +L ++ + F+LRR + ++ LP + + II C +A Q
Sbjct: 970 GE-KVELNE---EETILIIRRLHKVLRPFLLRRLKKEVEHQLPDKVEYIIKCDMSALQRV 1025
Query: 573 AFHKILTEGQLNFSNMTFNSSLG------------LITLFKKICNSTRLIK--TDPYYEE 618
+ + ++G L +T S G I +K+CN + + + Y +
Sbjct: 1026 LYKHMQSKGVL----LTDGSEKGKHGKGGAKALMNTIVQLRKLCNHPFMFQHIEEKYCDH 1081
Query: 619 RLSQVQXXXXXXXXXXXXLRILLSLLHELKTKTDEKVVVISNYTQTLDIIEGHCSSEGYT 678
+L +L +LK T+ +V++ TQ + IIE + +
Sbjct: 1082 TGGHGVVSGPDLYRVSGKFELLDRILPKLKA-TNHRVLLFCQMTQCMTIIEDYLGWRQFG 1140
Query: 679 SARLDGSTATKTRDQIVTSFNNDPS-IFVFLLSAKSGGVGLNLIGASRLVLFDNDWNPSI 737
RLDG+T + R +++ FN S +FVFLLS ++GG+GLNL A +V+FD+DWNP
Sbjct: 1141 YLRLDGTTKAEDRGELLRKFNAKGSDVFVFLLSTRAGGLGLNLQTADTVVIFDSDWNPHQ 1200
Query: 738 DLQAMSRIHRDGQRRPCFIYRLVTTGCIDEKILQRQLMKIALSKKFLDSATDQSKNDDDL 797
DLQA R HR GQR + RL+T ++E+IL K+ + +K + + K+
Sbjct: 1201 DLQAQDRAHRIGQRNEVRVLRLMTVNSVEERILAAARYKLNMDEKVIQAGMFDQKSTGSE 1260
Query: 798 FQQ 800
QQ
Sbjct: 1261 RQQ 1263
>Hs21071056 [BK] KOG0386 Chromatin remodeling complex SWI/SNF component SWI2 and
related ATPases (DNA/RNA helicase superfamily)
Length = 1647
Score = 194 bits (494), Expect = 4e-49
Identities = 152/525 (28%), Positives = 263/525 (49%), Gaps = 63/525 (12%)
Query: 293 VMNMVHTKGDESMILERDDDIKGCLLADEMGLGKXXXXXXXXXXXXKQTPYPTIINQRGV 352
V+ KG E ++ ++++ G +LADEMGLGK TI +
Sbjct: 753 VLKQYQIKGLEWLVSLYNNNLNG-ILADEMGLGK------------------TIQTIALI 793
Query: 353 TLAGEISKV----LIVCPVTLIGNWKKEFKKWLPMNRIGVLTLHSRNSPTEDKA---QVR 405
T E ++ LI+ P++ + NW EF KW P V+ + + SP +A Q+R
Sbjct: 794 TYLMEHKRINGPFLIIVPLSTLSNWAYEFDKWAP----SVVKVSYKGSPAARRAFVPQLR 849
Query: 406 SFLKVPRTYQVLIVGYEKLLSIKDELQNEKRNLDLVICDEGHRLKNKDSKILKVLQSLDI 465
S + VL+ YE + IKD+ K +I DEGHR+KN K+ +VL + +
Sbjct: 850 S-----GKFNVLLTTYEYI--IKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYV 902
Query: 466 E-KKIVLSGTPIQNDLEEFYTIIDFINPGILGSFGRFKREYILPIARSRD-VNAKQNQTL 523
++++L+GTP+QN L E + +++F+ P I S F++ + P A + + V+ + +T+
Sbjct: 903 APRRLLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETI 962
Query: 524 VEQGLLRSDQLIEITKRFILRRTNEILQQYLPPRTDLIIFCKPTAEQ------VEAFHKI 577
+ ++R +L ++ + F+LRR + ++ LP + + +I C +A Q ++A +
Sbjct: 963 L---IIR--RLHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVL 1017
Query: 578 LTEGQLNFSNMTFNSS--LGLITLFKKICNSTRLIKTDPYYEERLSQVQXXXXXXXXXXX 635
LT+G + + I +KICN + + + EE S+
Sbjct: 1018 LTDGSEKDKKGKGGTKTLMNTIMQLRKICNHPYMFQ---HIEESFSEHLGFTGGIVQGLD 1074
Query: 636 XLR------ILLSLLHELKTKTDEKVVVISNYTQTLDIIEGHCSSEGYTSARLDGSTATK 689
R +L +L +L+ T+ KV++ T + I+E + + G+ RLDG+T +
Sbjct: 1075 LYRASGKFELLDRILPKLRA-TNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAE 1133
Query: 690 TRDQIVTSFNNDPS-IFVFLLSAKSGGVGLNLIGASRLVLFDNDWNPSIDLQAMSRIHRD 748
R ++ +FN S F+FLLS ++GG+GLNL A +++FD+DWNP DLQA R HR
Sbjct: 1134 DRGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRI 1193
Query: 749 GQRRPCFIYRLVTTGCIDEKILQRQLMKIALSKKFLDSATDQSKN 793
GQ+ + RL T ++EKIL K+ + +K + + K+
Sbjct: 1194 GQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKS 1238
>At5g18620 [K] KOG0385 Chromatin remodeling complex WSTF-ISWI small subunit
Length = 1063
Score = 194 bits (493), Expect = 5e-49
Identities = 135/493 (27%), Positives = 241/493 (48%), Gaps = 56/493 (11%)
Query: 317 LLADEMGLGKXXXXXXXXXXXXKQTPYPTIINQRGVTLAGEISKVLIVCPVTLIGNWKKE 376
+LADEMGLGK + RG+ ++V P + +GNW E
Sbjct: 203 ILADEMGLGKTLQTISLLAYLHEY---------RGIN-----GPHMVVAPKSTLGNWMNE 248
Query: 377 FKKWLPMNRIGVLTLHSRNSPTEDKAQVRSFLKVPRTYQVLIVGYEKLLSIKDELQNEKR 436
+++ P+ R + +P E++ +R L V + + + +E ++IK++ +
Sbjct: 249 IRRFCPVLR----AVKFLGNP-EERRHIREELLVAGKFDICVTSFE--MAIKEKTTLRRF 301
Query: 437 NLDLVICDEGHRLKNKDSKILKVLQSLDIEKKIVLSGTPIQNDLEEFYTIIDFINPGILG 496
+ +I DE HR+KN++S + K ++ +++++GTP+QN+L E + +++F+ P +
Sbjct: 302 SWRYIIIDEAHRIKNENSLLSKTMRLFSTNYRLLITGTPLQNNLHELWALLNFLLPEVFS 361
Query: 497 SFGRFKREYILPIARSRDVNAKQNQTLVEQGLLRSDQLIEITKRFILRRTNEILQQYLPP 556
S F + ++ + +Q V Q QL ++ + F+LRR +++ LPP
Sbjct: 362 SAETFDEWF--------QISGENDQQEVVQ------QLHKVLRPFLLRRLKSDVEKGLPP 407
Query: 557 RTDLIIFCKPTAEQVEAFHKILTEGQLNFSNMTFNSS--LGLITLFKKICNSTRLIKT-- 612
+ + I+ + Q + ++K L + L N L + +K CN L +
Sbjct: 408 KKETILKVGMSQMQKQ-YYKALLQKDLEVVNGGGERKRLLNIAMQLRKCCNHPYLFQGAE 466
Query: 613 --DPYYEERLSQVQXXXXXXXXXXXXLRILLSLLHELKTKTDEKVVVISNYTQTLDIIEG 670
PY + +L LL +LK + D +V++ S T+ LDI+E
Sbjct: 467 PGPPY---------TTGDHLVTNAGKMVLLDKLLPKLKDR-DSRVLIFSQMTRLLDILED 516
Query: 671 HCSSEGYTSARLDGSTATKTRDQIVTSFNNDPSI-FVFLLSAKSGGVGLNLIGASRLVLF 729
+ GY R+DG+T RD + ++N S FVFLLS ++GG+G+NL A ++L+
Sbjct: 517 YLMYRGYQYCRIDGNTGGDERDASIEAYNKPGSEKFVFLLSTRAGGLGINLATADVVILY 576
Query: 730 DNDWNPSIDLQAMSRIHRDGQRRPCFIYRLVTTGCIDEKILQRQLMKIALSKKFLDS--- 786
D+DWNP +DLQA R HR GQ++ ++R T I+ K+++R K+AL +
Sbjct: 577 DSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTENAIEAKVIERAYKKLALDALVIQQGRL 636
Query: 787 ATDQSKNDDDLFQ 799
A ++ N D+L Q
Sbjct: 637 AEQKTVNKDELLQ 649
>Hs21071046 [K] KOG0385 Chromatin remodeling complex WSTF-ISWI small subunit
Length = 1033
Score = 194 bits (492), Expect = 7e-49
Identities = 132/465 (28%), Positives = 236/465 (50%), Gaps = 55/465 (11%)
Query: 362 LIVCPVTLIGNWKKEFKKWLPMNRIGVLTLHSRNSPTEDKAQVRSFLK---VPRTYQVLI 418
+++ P + + NW EFK+W+P R+ DK +F++ +P + V +
Sbjct: 215 MVLVPKSTLHNWMNEFKRWVPSLRVICFV--------GDKDARAAFIRDEMMPGEWDVCV 266
Query: 419 VGYEKLLSIKDELQNEKRNLDLVICDEGHRLKNKDSKILKVLQSLDIEKKIVLSGTPIQN 478
YE + IK++ +K + ++ DE HR+KN+ SK+ ++++ +++L+GTP+QN
Sbjct: 267 TSYEMV--IKEKSVFKKFHWRYLVIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQN 324
Query: 479 DLEEFYTIIDFINPGILGSFGRFKREYILPIARSRDVNAKQNQTLVEQGLLRSDQLIEIT 538
+L E + +++F+ P + S F + N +Q LVE+ L +
Sbjct: 325 NLHELWALLNFLLPDVFNSADDFDSWFDTK-------NCLGDQKLVER-------LHAVL 370
Query: 539 KRFILRRTNEILQQYLPPRTDLIIFCKPTAEQVEAFHKILTEG--QLNFSN-MTFNSSLG 595
K F+LRR +++ LPP+ ++ I+ + Q E + KIL + LN S M L
Sbjct: 371 KPFLLRRIKTDVEKSLPPKKEIKIYLGLSKMQREWYTKILMKDIDVLNSSGKMDKMRLLN 430
Query: 596 LITLFKKICNSTRLI---KTDPYYEERLSQVQXXXXXXXXXXXXLRILLSLLHELKTKTD 652
++ +K CN L + P Y + +L LL +LK +
Sbjct: 431 ILMQLRKCCNHPYLFDGAEPGPPY--------TTDEHIVSNSGKMVVLDKLLAKLKEQ-G 481
Query: 653 EKVVVISNYTQTLDIIEGHCSSEGYTSARLDGSTATKTRD------------QIVTSFNN 700
+V++ S T+ LDI+E +C GY RLDG T + R+ + + +FN
Sbjct: 482 SRVLIFSQMTRLLDILEDYCMWRGYEYCRLDGQTPHEEREDKFLEVEFLGQREAIEAFNA 541
Query: 701 -DPSIFVFLLSAKSGGVGLNLIGASRLVLFDNDWNPSIDLQAMSRIHRDGQRRPCFIYRL 759
+ S F+F+LS ++GG+G+NL A ++L+D+DWNP +DLQAM R HR GQ++P ++RL
Sbjct: 542 PNSSKFIFMLSTRAGGLGINLASADVVILYDSDWNPQVDLQAMDRAHRIGQKKPVRVFRL 601
Query: 760 VTTGCIDEKILQRQLMKIALSKKFLDSATDQSKNDDDLFQQEELK 804
+T ++E+I++R +K+ L + + + L ++E L+
Sbjct: 602 ITDNTVEERIVERAEIKLRLDSIVIQQGRLIDQQSNKLAKEEMLQ 646
>7303422 [K] KOG0385 Chromatin remodeling complex WSTF-ISWI small subunit
Length = 1027
Score = 194 bits (492), Expect = 7e-49
Identities = 143/511 (27%), Positives = 250/511 (47%), Gaps = 58/511 (11%)
Query: 300 KGDESMILERDDDIKGCLLADEMGLGKXXXXXXXXXXXXKQTPYPTIINQRGVTLAGEIS 359
+G MI ++ I G +LADEMGLGK NQ G +
Sbjct: 134 RGLNWMISLYENGING-ILADEMGLGKTLQTISLLGYLKH------FKNQAGPHI----- 181
Query: 360 KVLIVCPVTLIGNWKKEFKKWLPMNRIGVLT--LHSRNSPTEDKAQVRSFLKVPRTYQVL 417
++ P + + NW EFKKW P R L +RN+ D + +P + V
Sbjct: 182 ---VIVPKSTLQNWVNEFKKWCPSLRAVCLIGDQDTRNTFIRD-------VLMPGEWDVC 231
Query: 418 IVGYEKLLSIKDELQNEKRNLDLVICDEGHRLKNKDSKILKVLQSLDIEKKIVLSGTPIQ 477
+ YE + I+++ +K N ++ DE HR+KN+ SK+ ++L+ +++++GTP+Q
Sbjct: 232 VTSYE--MCIREKSVFKKFNWRYLVIDEAHRIKNEKSKLSEILREFKTANRLLITGTPLQ 289
Query: 478 NDLEEFYTIIDFINPGILGSFGRFKREYILPIARSRDVNAKQNQTLVEQGLLRSDQLIEI 537
N+L E + +++F+ P + S F + N L + L+ +L +
Sbjct: 290 NNLHELWALLNFLLPDVFNSSEDFDEWF------------NTNTCLGDDALIT--RLHAV 335
Query: 538 TKRFILRRTNEILQQYLPPRTDLIIFCKPTAEQVEAFHKILTEG--QLNFSNMTFNSSLG 595
K F+LRR +++ L P+ ++ IF + Q + + K+L + +N + L
Sbjct: 336 LKPFLLRRLKAEVEKRLKPKKEMKIFVGLSKMQRDWYTKVLLKDIDVVNGAGKVEKMRLQ 395
Query: 596 LITLFKKICNSTRLIKTDPYYEERLSQ--VQXXXXXXXXXXXXLRILLSLLHELKTKTDE 653
I + + C + PY + + IL LL +L+ +
Sbjct: 396 NILMQLRKCTN------HPYLFDGAEPGPPYTTDTHLVYNSGKMAILDKLLPKLQEQ-GS 448
Query: 654 KVVVISNYTQTLDIIEGHCSSEGYTSARLDGSTATKTRDQIVTSFNNDPSI-FVFLLSAK 712
+V++ S T+ LDI+E +C Y RLDG T + R++ + FN D S F+F+LS +
Sbjct: 449 RVLIFSQMTRMLDILEDYCHWRNYNYCRLDGQTPHEDRNRQIQEFNMDNSAKFLFMLSTR 508
Query: 713 SGGVGLNLIGASRLVLFDNDWNPSIDLQAMSRIHRDGQRRPCFIYRLVTTGCIDEKILQR 772
+GG+G+NL A ++++D+DWNP +DLQAM R HR GQ++ ++RL+T ++EKI++R
Sbjct: 509 AGGLGINLATADVVIIYDSDWNPQMDLQAMDRAHRIGQKKQVRVFRLITESTVEEKIVER 568
Query: 773 QLMKIALSK------KFLDSATDQSKNDDDL 797
+K+ L K + +D+ ++Q D+ L
Sbjct: 569 AEVKLRLDKMVIQGGRLVDNRSNQLNKDEML 599
>Hs4557449 [K] KOG0384 Chromodomain-helicase DNA-binding protein
Length = 1739
Score = 193 bits (490), Expect = 1e-48
Identities = 148/469 (31%), Positives = 232/469 (48%), Gaps = 45/469 (9%)
Query: 317 LLADEMGLGKXXXXXXXXXXXXKQTPYPTIINQRGVTLAGEISKVLIVCPVTLIGNWKKE 376
+LADEMGLGK Q LIV P++ + +W++E
Sbjct: 506 ILADEMGLGKTIQTISFLSYLFHQHQL--------------YGPFLIVVPLSTLTSWQRE 551
Query: 377 FKKWLPMNRIGVLT--LHSRNSPTEDKAQVRSFLKVPRTYQVLIVGYEKLLSIKDELQNE 434
F+ W P + V L SRN+ E + + S K + + LI YE LL KD+
Sbjct: 552 FEIWAPEINVVVYIGDLMSRNTIREYE-WIHSQTKRLK-FNALITTYEILL--KDKTVLG 607
Query: 435 KRNLDLVICDEGHRLKNKDSKILKVLQSLDIEKKIVLSGTPIQNDLEEFYTIIDFINPGI 494
N + DE HRLKN DS + K L +++++GTP+QN L+E ++++ FI P
Sbjct: 608 SINWAFLGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSLLHFIMPEK 667
Query: 495 LGSFGRFKREYILPIARSRDVNAKQNQTLVEQGLLRSDQLIEITKRFILRRTNEILQQYL 554
+ F+ ++ + R+ N Q+ L ++ + F+LRR + +++ L
Sbjct: 668 FEFWEDFEEDH----GKGRE-NGYQS-------------LHKVLEPFLLRRVKKDVEKSL 709
Query: 555 PPRTDLIIFCKPTAEQVEAFHKILTEGQLNFSNMTFNSSLGLITL---FKKICNSTRLIK 611
P + + I+ + +A Q + + ILT + T S+ G + + KK CN LIK
Sbjct: 710 PAKVEQILRVEMSALQKQYYKWILTRNYKALAKGTRGSTSGFLNIVMELKKCCNHCYLIK 769
Query: 612 TDPYYEERLSQVQXXXXXXXXXXXXLRILLSLLHELKTKTDEKVVVISNYTQTLDIIEGH 671
P E Q L +L LL L+ + + +V++ S + LDI+ +
Sbjct: 770 --PPEENERENGQEILLSLIRSSGKLILLDKLLTRLRERGN-RVLIFSQMVRMLDILAEY 826
Query: 672 CSSEGYTSARLDGSTATKTRDQIVTSFNNDPSI-FVFLLSAKSGGVGLNLIGASRLVLFD 730
+ + Y RLDGS + R Q + FN D S F FLLS ++GG+G+NL A +V+FD
Sbjct: 827 LTIKHYPFQRLDGSIKGEIRKQALDHFNADGSEDFCFLLSTRAGGLGINLASADTVVIFD 886
Query: 731 NDWNPSIDLQAMSRIHRDGQRRPCFIYRLVTTGCIDEKILQRQLMKIAL 779
+DWNP DLQA +R HR GQ++ IYRLVT G ++E+I++R K+ L
Sbjct: 887 SDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGTVEEEIIERAKKKMVL 935
>At2g02090 [B] KOG0389 SNF2 family DNA-dependent ATPase
Length = 763
Score = 193 bits (490), Expect = 1e-48
Identities = 166/586 (28%), Positives = 261/586 (44%), Gaps = 119/586 (20%)
Query: 278 LRPHQREGVKFLYDCVMNMVHTKGDESMILERDDDIKGCLLADEMGLGKXXXXXXXXXXX 337
L+P+Q GV FL +++ KG I+G +LADEMGLGK
Sbjct: 213 LKPYQLVGVNFLL-----LLYKKG-----------IEGAILADEMGLGKTIQAIT----- 251
Query: 338 XKQTPYPTIINQRGVTLAGEISKVLIVCPVTLIGNWKKEFKKWLPMNRIGVLTLHSRNSP 397
Y T++++ L + L+VCP +++ NW++E +KW P VL H
Sbjct: 252 -----YLTLLSR----LNNDPGPHLVVCPASVLENWERELRKWCPS--FTVLQYHGAARA 300
Query: 398 TEDKAQVRSFLKV--PRTYQVLIVGYEKLLSIKDELQNEKRNL-----DLVICDEGHRLK 450
+ ++ S K P + VL+V Y ++ +++++ L V+ DE H LK
Sbjct: 301 AYSR-ELNSLSKAGKPPPFNVLLVCYSLFERHSEQQKDDRKVLKRWRWSCVLMDEAHALK 359
Query: 451 NKDSKILKVLQSL--DIEKKIVLSGTPIQNDLEEFYTIIDFINPGILGSFGRFKREYILP 508
+K+S K L S+ + ++++L+GTP+QNDL E +++++F+ P I +
Sbjct: 360 DKNSYRWKNLMSVARNANQRLMLTGTPLQNDLHELWSLLEFMLPDIFTTEN--------- 410
Query: 509 IARSRDVNAKQNQTLVEQGLLRSDQLIEITKRFILRRTNEILQQYLPPRTDLIIFCKPTA 568
+ + +NA+ + + ++ I FILRR + Q L P+ + +
Sbjct: 411 VDLKKLLNAEDTELIT--------RMKSILGPFILRRLKSDVMQQLVPKIQRVEYVLMER 462
Query: 569 EQVEAFHKILTEGQ-------LNFSNMTFNSSLGLI---------TLFKKICNSTRLIKT 612
+Q +A+ + + E + + S+ + NS + T F+KI N LI+
Sbjct: 463 KQEDAYKEAIEEYRAASQARLVKLSSKSLNSLAKALPKRQISNYFTQFRKIANHPLLIRR 522
Query: 613 --------------------------DPYYEE-------RLSQVQ----------XXXXX 629
D EE R+ Q+
Sbjct: 523 IYSDEDVIRIARKLHPIGAFGFECSLDRVIEEVKGFNDFRIHQLLFQYGVNDTKGTLSDK 582
Query: 630 XXXXXXXLRILLSLLHELKTKTDEKVVVISNYTQTLDIIEGHCSSEGYTSARLDGSTATK 689
R L LL +K K+ +V++ S +T LDI+E G T RLDGST
Sbjct: 583 HVMLSAKCRTLAELLPSMK-KSGHRVLIFSQWTSMLDILEWTLDVIGVTYRRLDGSTQVT 641
Query: 690 TRDQIVTSFNNDPSIFVFLLSAKSGGVGLNLIGASRLVLFDNDWNPSIDLQAMSRIHRDG 749
R IV +FNND SIF LLS ++GG GLNL GA +++ D D+NP ID QA R HR G
Sbjct: 642 DRQTIVDTFNNDKSIFACLLSTRAGGQGLNLTGADTVIIHDMDFNPQIDRQAEDRCHRIG 701
Query: 750 QRRPCFIYRLVTTGCIDEKILQRQLMKIALSKKFLDSATDQSKNDD 795
Q +P I+RLVT +DE I + K+ L L+S N D
Sbjct: 702 QTKPVTIFRLVTKSTVDENIYEIAKRKLVLDAAVLESGVHVDDNGD 747
>CE11572 [K] KOG0384 Chromodomain-helicase DNA-binding protein
Length = 1465
Score = 192 bits (489), Expect = 2e-48
Identities = 155/508 (30%), Positives = 237/508 (46%), Gaps = 63/508 (12%)
Query: 278 LRPHQREGVKFLYDCVMNMVHTKGDESMILERDDDIKGCLLADEMGLGKXXXXXXXXXXX 337
LR +Q EG+ + M KG+ S +LADEMGLGK
Sbjct: 405 LRDYQLEGLNW-----MVYAWCKGNSS------------ILADEMGLGKTIQSISLLASL 447
Query: 338 XKQTPYPTIINQRGVTLAGEISKVLIVCPVTLIGNWKKEFKKWLP-MNRIGVL-TLHSRN 395
+ LAG L+V P++ + W+KEF +W P MN + + + SR+
Sbjct: 448 FHR-----------YDLAGPY---LVVVPLSTMAAWQKEFAQWAPEMNLVVYMGDVVSRD 493
Query: 396 SPTEDKAQVRSFLKVPRTYQVLIVGYEKLLSIKDELQNEKRNLDLVICDEGHRLKNKDSK 455
+ + V K+ ++ YE LL KD+ + ++ DE HRLKN +S
Sbjct: 494 MIRQYEWFVGGTKKMK--INAILTTYEILL--KDKAFLSSIDWAALLVDEAHRLKNDESL 549
Query: 456 ILKVLQSLDIEKKIVLSGTPIQNDLEEFYTIIDFINPGILGSFGRFKREYILPIARSRDV 515
+ K L K++++GTP+QN L+E + ++ FI P + F+ + +
Sbjct: 550 LYKSLTQFRFNHKLLITGTPLQNSLKELWALLHFIMPEKFDCWEEFETAH-------NES 602
Query: 516 NAKQNQTLVEQGLLRSDQLIEITKRFILRRTNEILQQYLPPRTDLIIFCKPTAEQVEAFH 575
N K L ++ + F+LRR + +++ LPP+T+ I+ TA Q + +
Sbjct: 603 NHKGISALHKK-----------LEPFLLRRVKKDVEKSLPPKTEQILRVDMTAHQKQFYK 651
Query: 576 KILTEGQLNFSNMTFNSSLGLITL---FKKICNSTRLIKTDPYYEERLSQVQXXXXXXXX 632
ILT+ S S G + L KK CN L + Y+ Q
Sbjct: 652 WILTKNYRELSKGVKGSINGFVNLVMELKKCCNHASLTRQ---YDHIYDDAQGRLQQLLK 708
Query: 633 XXXXLRILLSLLHELKTKTDEKVVVISNYTQTLDIIEGHCSSEGYTSARLDGSTATKTRD 692
L +L LL LK K +V++ S LDI++ + + S RLDGS R
Sbjct: 709 SSGKLILLDKLLCRLKDK-GHRVLIFSQMVMMLDILQEYLQLRRFPSQRLDGSMRADLRK 767
Query: 693 QIVTSFNNDPSI-FVFLLSAKSGGVGLNLIGASRLVLFDNDWNPSIDLQAMSRIHRDGQR 751
Q + +N S F FLLS ++GG+G+NL A +++FD+DWNP DLQAMSR HR GQ
Sbjct: 768 QALDHYNAPGSTDFAFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAMSRAHRIGQT 827
Query: 752 RPCFIYRLVTTGCIDEKILQRQLMKIAL 779
+ IYRLVT G ++E+I++R K+ L
Sbjct: 828 KTVNIYRLVTKGSVEEEIVERAKRKLVL 855
>At3g54280 [K] KOG0392 SNF2 family DNA-dependent ATPase domain-containing
protein
Length = 2049
Score = 191 bits (485), Expect = 4e-48
Identities = 150/545 (27%), Positives = 246/545 (44%), Gaps = 77/545 (14%)
Query: 317 LLADEMGLGKXXXXXXXXXXXXKQTPYPTIINQRGVTLAGEISKVLIVCPVTLIGNWKKE 376
+L D+MGLGK + +RG T ++ +IVCP TL+G+W E
Sbjct: 1466 ILCDDMGLGKTLQASAIVASDAAE--------RRGSTDELDVFPSIIVCPSTLVGHWAFE 1517
Query: 377 FKKWLPMNRIGVLTLHSRNSPTEDKAQVRSFLKVPRTYQVLIVGYEKLLSIKDELQNEKR 436
+K++ ++ + VL +D+ +R + V+I Y+ + D L
Sbjct: 1518 IEKYIDLSLLSVLQYVGS---AQDRVSLREQFN---NHNVIITSYDVVRKDVDYLTQFSW 1571
Query: 437 NLDLVICDEGHRLKNKDSKILKVLQSLDIEKKIVLSGTPIQNDLEEFYTIIDFINPGILG 496
N I DEGH +KN SKI ++ L + +++LSGTPIQN++ E +++ DF+ PG LG
Sbjct: 1572 NY--CILDEGHIIKNAKSKITAAVKQLKAQHRLILSGTPIQNNIMELWSLFDFLMPGFLG 1629
Query: 497 SFGRFKREYILPIARSRDVNAKQNQTLVEQGLLRSDQLIEITKRFILRRTNEILQQYLPP 556
+ +F+ Y P+ +RD E G+L + L + F+LRRT E + LP
Sbjct: 1630 TERQFQASYGKPLLAARDPKCSAKD--AEAGVLAMEALHKQVMPFLLRRTKEEVLSDLPE 1687
Query: 557 RTDLIIFCKPTAEQVEAFHK-------------ILTEGQLNFSNMTFNSSLGLITLFK-- 601
+ +C + Q++ + + I +G + N + +F+
Sbjct: 1688 KIIQDRYCDLSPVQLKLYEQFSGSSAKQEISSIIKVDGSADSGNADVAPTKASTHVFQAL 1747
Query: 602 ----KICNSTRLIKTDPYYEERLSQVQXXXXXXXXXXXXLR---------ILLSLLHELK 648
K+C+ L+ D E S + L L +L E
Sbjct: 1748 QYLLKLCSHPLLVLGDKVTEPVASDLAAMINGCSDIITELHKVQHSPKLVALQEILEECG 1807
Query: 649 TKTD------------EKVVVISNYTQTLDIIEG---HCSSEGYTSARLDGSTATKTRDQ 693
+D +V++ + + LDIIE + T RLDGS + R +
Sbjct: 1808 IGSDASSSDGTLSVGQHRVLIFAQHKALLDIIEKDLFQAHMKSVTYMRLDGSVVPEKRFE 1867
Query: 694 IVTSFNNDPSIFVFLLSAKSGGVGLNLIGASRLVLFDNDWNPSID-----------LQAM 742
IV +FN+DP+I V LL+ GG+GLNL A LV ++DWNP D QAM
Sbjct: 1868 IVKAFNSDPTIDVLLLTTHVGGLGLNLTSADTLVFMEHDWNPMRDHQFANIELNKLWQAM 1927
Query: 743 SRIHRDGQRRPCFIYRLVTTGCIDEKILQRQLMKIALSKKFL--DSATDQSKNDD---DL 797
R HR GQ+R ++RL+ G ++EK++ Q K++++ + ++A+ ++ N D DL
Sbjct: 1928 DRAHRLGQKRVVNVHRLIMRGTLEEKVMSLQKFKVSVANTVINAENASMKTMNTDQLLDL 1987
Query: 798 FQQEE 802
F E
Sbjct: 1988 FASAE 1992
>ECU10g1320 [K] KOG0385 Chromatin remodeling complex WSTF-ISWI small subunit
Length = 823
Score = 190 bits (482), Expect = 1e-47
Identities = 137/535 (25%), Positives = 253/535 (46%), Gaps = 74/535 (13%)
Query: 278 LRPHQREGVKFLYDCVMNMVHTKGDESMILERDDDIKGCLLADEMGLGKXXXXXXXXXXX 337
LR +Q EG+ +L + N ++ C+LADEMGLGK
Sbjct: 53 LRDYQIEGLNWLINMHENSIN-----------------CILADEMGLGKTLQTIAFLG-- 93
Query: 338 XKQTPYPTIINQRGVTLAGEISKVLIVCPVTLIGNWKKEFKKWLPMNRIGVLTLHSRNSP 397
Y + + E + LI+ P + + NW++EF+K++P ++ V SR
Sbjct: 94 -----YIRYVKK-------ERKRHLIILPKSTLANWRREFRKFMPNYKVRVF-YSSRKEM 140
Query: 398 TEDKAQVRSFLKVPRTYQVLIVGYEKLLSIKDELQNEKRNLDLVICDEGHRLKNKDSKIL 457
+ ++ S + + YE ++ + L K + ++ DE HR+KN+ S +
Sbjct: 141 RREAEEIMS-----SRWDACLTTYEMCINARSILNTVKWSY--IVIDEAHRIKNEHSLLS 193
Query: 458 KVLQSLDIEKKIVLSGTPIQNDLEEFYTIIDFINPGILGSFGRFKREYILPIARSRDVNA 517
K+++ + +++++GTP+QN++ E + +++FI P I +F+ Y++ I
Sbjct: 194 KIVRIFSCDHRLLITGTPLQNNVHELWALLNFIVPEIFNDAEKFE-SYVMNIDEGDGEAI 252
Query: 518 KQNQTLVEQGLLRSDQLIEITKRFILRRTNEILQQYLPPRTDLIIFCKPTAEQVEAFHKI 577
++ +++++ F LRR ++ LPP+ + ++ K + Q E + +
Sbjct: 253 RRIRSVLQL--------------FFLRREKIDVEMSLPPKKIVNLYSKLSPMQREWYRML 298
Query: 578 LTE--GQLNFSNMTFNSSLGLITLFKKICNSTRLI---KTDPYYEERLSQVQXXXXXXXX 632
L L + + ++ +K CN L + PY ++
Sbjct: 299 LKRDLSPLGSTRDPKGMLMNVVMQLRKCCNHPYLFPDAEPKPYTNDK---------HIIE 349
Query: 633 XXXXLRILLSLLHELKTKTDEKVVVISNYTQTLDIIEGHCSSEGYTSARLDGSTATKTRD 692
+ +L LL LK K +V++ S + LDI+E + Y R+DGST+ + R
Sbjct: 350 NSGKMIVLDKLLASLKAK-GSRVLIFSQMSMMLDILEDYAMFREYEYCRIDGSTSYRDRT 408
Query: 693 QIVTSFNNDPSI-FVFLLSAKSGGVGLNLIGASRLVLFDNDWNPSIDLQAMSRIHRDGQR 751
+ + FN + S F+FLL+ ++GG+G+NL A ++LFD+DWNP +DLQA R HR GQ+
Sbjct: 409 EAIDGFNAEGSEKFLFLLTTRAGGLGINLSTADTVILFDSDWNPQMDLQAQDRAHRIGQK 468
Query: 752 RPCFIYRLVTTGCIDEKILQRQLMKIALSKKFLDSATDQSKNDDDLFQQEELKDL 806
+ ++RL++ ++E+I+ R L K+ L L +S + Q EL D+
Sbjct: 469 KQVVVFRLISENTVEERIVYRSLQKLKLDDILLQGRYHRSSS----VSQSELIDI 519
>Hs20536191 [K] KOG0385 Chromatin remodeling complex WSTF-ISWI small subunit
Length = 897
Score = 189 bits (481), Expect = 1e-47
Identities = 145/535 (27%), Positives = 242/535 (45%), Gaps = 69/535 (12%)
Query: 278 LRPHQREGVKFLYDCVMNMVHTKGDESMILERDDDIKGCLLADEMGLGKXXXXXXXXXXX 337
LR +Q EGV +L +R GC+L DEMGLGK
Sbjct: 46 LRSYQLEGVNWL-----------------AQRFHCQNGCILGDEMGLGKTCQTIALF--- 85
Query: 338 XKQTPYPTIINQRGVTLAGEISK---VLIVCPVTLIGNWKKEFKKWLPMNRIGVLTLHSR 394
+ LAG ++ LI+CP++++ NWK+E +++ P L+ +
Sbjct: 86 --------------IYLAGRLNDEGPFLILCPLSVLSNWKEEMQRFAPG-----LSCVTY 126
Query: 395 NSPTEDKAQVRSFLKVPRTYQVLIVGYEKLLSIKDELQNEKRNLDLVICDEGHRLKNKDS 454
E++A ++ LK + VL+ YE + +KD + +++ DE HRLKN+ S
Sbjct: 127 AGDKEERACLQQDLKQESRFHVLLTTYE--ICLKDASFLKSFPWSVLVVDEAHRLKNQSS 184
Query: 455 KILKVLQSLDIEKKIVLSGTPIQNDLEEFYTIIDFINPGILGSFGRFKREYILPIARSRD 514
+ K L + ++L+GTPIQN L+E Y+++ F+ P + K E I R +D
Sbjct: 185 LLHKTLSEFSVVFSLLLTGTPIQNSLQELYSLLSFVEPDLFS-----KEEVGDFIQRYQD 239
Query: 515 VNAKQNQTLVEQGLLRSDQLIEITKRFILRRTNEILQQYLPPRTDLIIFCKPTAEQVEAF 574
+ + ++L ++ + F+LRR + LP +T+++I+ +A Q + +
Sbjct: 240 IEKESES---------GNELHKLLQPFLLRRVKAEVATELPKKTEVVIYHGMSALQKKYY 290
Query: 575 HKILTEGQLNFSNMTFNSSLGLITLFKKICNSTRLIKTDPYYEERLSQVQXXXXXXXXXX 634
IL + F N T + I + R PY + +
Sbjct: 291 KAILMKDLDAFENETAKK-----VKLQNILSQLRKCVDHPYLFDGVEPEPFEVGDHLTEA 345
Query: 635 XXLRILLSLLHELKTKTDEKVVVISNYTQTLDIIEGHCSSEGYTSARLDGSTATKTRDQI 694
LL L +V++ S TQ LDI++ + GY+ R+DGS + R
Sbjct: 346 SGKLHLLDKLLAFLYSGGHRVLLFSQMTQMLDILQDYMDYRGYSYERVDGSVRGEERHLA 405
Query: 695 VTSFNNDPSIFVFLLSAKSGGVGLNLIGASRLVLFDNDWNPSIDLQAMSRIHRDGQRRPC 754
+ +F P IFVFLLS ++GGVG+NL A ++ D+D+NP DLQA +R HR GQ +
Sbjct: 406 IKNFGQQP-IFVFLLSTRAGGVGMNLTAADTVIFVDSDFNPQNDLQAAARAHRIGQNKSV 464
Query: 755 FIYRLVTTGCIDEKILQRQLMKIALSKKFLDS-----ATDQSKNDDDLFQQEELK 804
+ RL+ ++E + ++ K+ L+ ++ + D DL E LK
Sbjct: 465 KVIRLIGRDTVEEIVYRKAASKLQLTNMIIEGGHFTLGAQKPAADADLQLSEILK 519
>7300091 [K] KOG0392 SNF2 family DNA-dependent ATPase domain-containing
protein
Length = 1861
Score = 188 bits (478), Expect = 3e-47
Identities = 161/587 (27%), Positives = 262/587 (44%), Gaps = 87/587 (14%)
Query: 246 LFDPVSIKDPLIMNKTENHKVSVIVDPLLSKTLRPHQREGVKFLYDCVMNMVHTKGDESM 305
LF+P SI N+KV V + S LR +Q+ G+ +L+ +N + G
Sbjct: 1269 LFNPKSIP---------NYKVPVPI----SVELRCYQQAGINWLW--FLNKYNLHG---- 1309
Query: 306 ILERDDDIKGCLLADEMGLGKXXXXXXXXXXXXKQTPYPTIINQRGVTLAGEISKVLIVC 365
+L D+MGLGK + N L++C
Sbjct: 1310 -----------ILCDDMGLGKTLQTICILAGDHMHRQTANLANLPS----------LVIC 1348
Query: 366 PVTLIGNWKKEFKKWLPMNRIGVLTLHSRNSPTEDKAQVRSFLKVPRTYQVLIVGYEKLL 425
P TL G+W E +K+L + + LH P + ++RS + +++ Y+ +
Sbjct: 1349 PPTLTGHWVYEVEKFLDQGSV-LRPLHYYGFPV-GREKLRS--DIGTKCNLVVASYDTVR 1404
Query: 426 SIKDELQNEKRNLDLVICDEGHRLKNKDSKILKVLQSLDIEKKIVLSGTPIQNDLEEFYT 485
D N + DEGH +KN +K K ++ L +++LSGTPIQN++ E ++
Sbjct: 1405 KDIDFFSGIHFNY--CVLDEGHIIKNGKTKSSKAIKRLKANHRLILSGTPIQNNVLELWS 1462
Query: 486 IIDFINPGILGSFGRFKREYILPIARSRDVNAKQNQTLVEQGLLRSDQLIEITKRFILRR 545
+ DF+ PG LG+ +F + + PI SRD AK + E G+L + L F+LRR
Sbjct: 1463 LFDFLMPGFLGTEKQFVQRFSRPILSSRD--AKSSAKEQEAGVLAMEALHRQVLPFLLRR 1520
Query: 546 TNEILQQYLPPRTDLIIFCKPTAEQVEAFHKILTEGQLN-FSNMTFNSSLGLIT------ 598
E + + LPP+ + C+ + Q+ + + + + +SS ++T
Sbjct: 1521 VKEDVLKDLPPKITQDLLCELSPLQLRLYEDFSNKHLKDCLDKLGDSSSASMVTENLSAK 1580
Query: 599 --------LFKKICNSTRLIKTDPYYEERLSQVQXXXXXXXXX------XXXLRILLSLL 644
+ +CN +L+ E L++V L L LL
Sbjct: 1581 THIFQALRYLQNVCNHPKLVLRQ---SEELTKVTSQLALSNSSLDDIEHSAKLPALKQLL 1637
Query: 645 ------HELKTKTDEKVVVISNYTQTLDIIE-----GHCSSEGYTSARLDGSTATKTRDQ 693
+ ++ + + ++ LDI+E H S Y RLDGS R
Sbjct: 1638 LDCGIGVQTESVSQHRALIFCQLKAMLDIVEQDLLRRHLPSVTY--LRLDGSVPASQRQD 1695
Query: 694 IVTSFNNDPSIFVFLLSAKSGGVGLNLIGASRLVLFDNDWNPSIDLQAMSRIHRDGQRRP 753
IV +FN+DPSI V LL+ GG+GLNL GA ++ ++DWNP DLQAM R HR GQ++
Sbjct: 1696 IVNNFNSDPSIDVLLLTTMVGGLGLNLTGADTVIFVEHDWNPMKDLQAMDRAHRIGQKKV 1755
Query: 754 CFIYRLVTTGCIDEKILQRQLMKIALSKKFL--DSATDQSKNDDDLF 798
+YRL+T ++EKI+ Q KI + + ++A+ Q+ +F
Sbjct: 1756 VNVYRLITRNSLEEKIMGLQKFKILTANTVVSAENASLQTMGTSQIF 1802
>Hs21362042 [K] KOG0384 Chromodomain-helicase DNA-binding protein
Length = 2713
Score = 188 bits (477), Expect = 4e-47
Identities = 149/519 (28%), Positives = 246/519 (46%), Gaps = 69/519 (13%)
Query: 314 KGCLLADEMGLGKXXXXXXXXXXXXKQTPYPTIINQRGVTLAGEISKVLIVCPVTLIGNW 373
K C+LADEMGLGK T +++ + L G LI+ P++ I NW
Sbjct: 478 KNCILADEMGLGKTIQSI-------------TFLSE--IFLRGIHGPFLIIAPLSTITNW 522
Query: 374 KKEFKKWLPMNRIGVLTLH----SRNSPTEDKAQVRSFLKVPRT----YQVLIVGYEKLL 425
++EF+ W MN I H SR + + R P + + V+I +E +L
Sbjct: 523 EREFRTWTEMNAI---VYHGSQISRQMIQQYEMVYRDAQGNPLSGVFKFHVVITTFEMIL 579
Query: 426 SIKDELQNEKRNLDLVICDEGHRLKNKDSKILKVLQSLDIEKKIVLSGTPIQNDLEEFYT 485
+ EL+ K + VI DE HRLKN++ K+L+ L+ + +E K++L+GTP+QN +EE ++
Sbjct: 580 ADCPELK--KIHWSCVIIDEAHRLKNRNCKLLEGLKLMALEHKVLLTGTPLQNSVEELFS 637
Query: 486 IIDFINPGILGSFGRFKREYILPIARSRDVNAKQNQTLVEQGLLRSDQLIEITKRFILRR 545
+++F+ P S F E+ D+ ++ + +L I K +LRR
Sbjct: 638 LLNFLEPSQFPSETAFLEEF-------GDLKTEE----------QVKKLQSILKPMMLRR 680
Query: 546 TNEILQQYLPPRTDLIIFCKPTAEQVEAFHKILTEGQLNFSNMTFNSS-------LGLIT 598
+ +++ L P+ + II + T Q + + IL + NFS +T ++ + +
Sbjct: 681 LKDDVEKNLAPKQETIIEVELTNIQKKYYRAILEK---NFSFLTKGANQHNMPNLINTMM 737
Query: 599 LFKKICNSTRLIKTDPYYEERLSQVQXXXXXXXXXXXXLRILLS------LLHELKTKT- 651
+K CN LI EE++ + L+ ++ L+ +L K
Sbjct: 738 ELRKCCNHPYLINGA---EEKILEDFRKTHSPDAPDFQLQAMIQAAGKLVLIDKLLPKLI 794
Query: 652 --DEKVVVISNYTQTLDIIEGHCSSEGYTSARLDGSTATKTRDQIVTSF-NNDPSIFVFL 708
KV++ S + LDI+E + YT R+DG R + F D FVFL
Sbjct: 795 AGGHKVLIFSQMVRCLDILEDYLIQRRYTYERIDGRVRGNLRQAAIDRFCKPDSDRFVFL 854
Query: 709 LSAKSGGVGLNLIGASRLVLFDNDWNPSIDLQAMSRIHRDGQRRPCFIYRLVTTGCIDEK 768
L ++GG+G+NL A ++FD+DWNP DLQA +R HR GQ + +YRL+T + +
Sbjct: 855 LCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKVYRLITRNSYERE 914
Query: 769 ILQRQLMKIALSKKFL-DSATDQSKNDDDLFQQEELKDL 806
+ + +K+ L K L D N + E++DL
Sbjct: 915 MFDKASLKLGLDKAVLQDINRKGGTNGVQQLSKMEVEDL 953
>SPAC1250.01 [BK] KOG0386 Chromatin remodeling complex SWI/SNF component SWI2
and related ATPases (DNA/RNA helicase superfamily)
Length = 1199
Score = 187 bits (476), Expect = 5e-47
Identities = 140/505 (27%), Positives = 246/505 (47%), Gaps = 44/505 (8%)
Query: 300 KGDESMILERDDDIKGCLLADEMGLGKXXXXXXXXXXXXKQTPYPTIINQRGVTLAGEIS 359
+G + MI ++ + G +LADEMGLGK ++ Q G
Sbjct: 423 RGLQWMISLYNNHLNG-ILADEMGLGKTIQTISLITHLIEKK------RQNG-------- 467
Query: 360 KVLIVCPVTLIGNWKKEFKKWLPMNRIGVLTLHSRNSPTEDKA---QVRSFLKVPRTYQV 416
L++ P++ + NW EF++W P ++ + + P KA QVR +QV
Sbjct: 468 PFLVIVPLSTLTNWTMEFERWAP----SIVKIVYKGPPQVRKALHPQVRH-----SNFQV 518
Query: 417 LIVGYEKLLSIKDELQNEKRNLDLVICDEGHRLKNKDSKILKVLQSLDIEK-KIVLSGTP 475
L+ YE + IKD + +I DEGHR+KN SK+ L + + +++L+GTP
Sbjct: 519 LLTTYEYI--IKDRPLLSRIKWIYMIIDEGHRMKNTQSKLTNTLTTYYSSRYRLILTGTP 576
Query: 476 IQNDLEEFYTIIDFINPGILGSFGRFKREYILPIARSRDVNAKQNQTLVEQGLLRSDQLI 535
+QN+L E + +++F+ P I S F + P A + + + + E+ LL +L
Sbjct: 577 LQNNLPELWALLNFVLPRIFNSIKSFDEWFNTPFANTGGQD--KMELTEEESLLVIRRLH 634
Query: 536 EITKRFILRRTNEILQQYLPPRTDLIIFCKPTAEQVEAFHKILTEGQLNFSNMTFNSS-- 593
++ + F+LRR + ++ LP + + +I C+ + Q + ++++ G L + +
Sbjct: 635 KVLRPFLLRRLKKDVEAELPDKVEKVIRCQMSGLQQKLYYQMKKHGMLYVEDAKRGKTGI 694
Query: 594 ---LGLITLFKKICNSTRLIKTDPYYEERLSQVQXXXXXXXXXXXXLRILLSLLHELKTK 650
+ KKICN + + E + +L +L +L +
Sbjct: 695 KGLQNTVMQLKKICNHPFVFED---VERSIDPTGFNYDMLWRVSGKFELLDRILPKL-FR 750
Query: 651 TDEKVVVISNYTQTLDIIEGHCSSEGYTSARLDGSTATKTRDQIVTSFNNDPS--IFVFL 708
+ ++++ TQ ++I+E + + RLDGST R +++ FN DP+ + +FL
Sbjct: 751 SGHRILMFFQMTQIMNIMEDYLHYRQWRYLRLDGSTKADDRSKLLGVFN-DPTAEVNLFL 809
Query: 709 LSAKSGGVGLNLIGASRLVLFDNDWNPSIDLQAMSRIHRDGQRRPCFIYRLVTTGCIDEK 768
LS ++GG+GLNL A +++FD+DWNP DLQA R HR GQ + IYRL+T ++E
Sbjct: 810 LSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQTKEVRIYRLITEKSVEEN 869
Query: 769 ILQRQLMKIALSKKFLDSATDQSKN 793
IL R K+ + K + + +K+
Sbjct: 870 ILARAQYKLDIDGKVIQAGKFDNKS 894
>Hs21071050 [BK] KOG0386 Chromatin remodeling complex SWI/SNF component SWI2 and
related ATPases (DNA/RNA helicase superfamily)
Length = 1568
Score = 187 bits (476), Expect = 5e-47
Identities = 147/514 (28%), Positives = 255/514 (49%), Gaps = 55/514 (10%)
Query: 300 KGDESMILERDDDIKGCLLADEMGLGKXXXXXXXXXXXXKQT----PYPTIINQRGVTLA 355
+G E M+ ++++ G +LADEMGLGK + PY
Sbjct: 726 QGLEWMVSLYNNNLNG-ILADEMGLGKTIQTIALITYLMEHKRLNGPY------------ 772
Query: 356 GEISKVLIVCPVTLIGNWKKEFKKWLPMNRIGVLTLHSRNSPTEDKAQVRSFLKVPRT-- 413
LI+ P++ + NW EF KW P V+ + + +P A RS + R+
Sbjct: 773 ------LIIVPLSTLSNWTYEFDKWAP----SVVKISYKGTP----AMRRSLVPQLRSGK 818
Query: 414 YQVLIVGYEKLLSIKDELQNEKRNLDLVICDEGHRLKNKDSKILKVLQSLDIE-KKIVLS 472
+ VL+ YE + IKD+ K +I DEGHR+KN K+ +VL + + ++I+L+
Sbjct: 819 FNVLLTTYEYI--IKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLT 876
Query: 473 GTPIQNDLEEFYTIIDFINPGILGSFGRFKREYILPIARSRD-VNAKQNQTLVEQGLLRS 531
GTP+QN L E + +++F+ P I S F++ + P A + + V+ + +T++ ++R
Sbjct: 877 GTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGERVDLNEEETIL---IIR- 932
Query: 532 DQLIEITKRFILRRTNEILQQYLPPRTDLIIFCKPTAEQ------VEAFHKILTEGQLNF 585
+L ++ + F+LRR + ++ LP + + +I C +A Q ++A +LT+G
Sbjct: 933 -RLHKVLRPFLLRRLKKEVESQLPEKVEYVIKCDMSALQKILYRHMQAKGILLTDGSEKD 991
Query: 586 SNMTFNSS--LGLITLFKKICNSTRLIK-TDPYYEERL--SQVQXXXXXXXXXXXXLRIL 640
+ + I +KICN + + + + E L S +L
Sbjct: 992 KKGKGGAKTLMNTIMQLRKICNHPYMFQHIEESFAEHLGYSNGVINGAELYRASGKFELL 1051
Query: 641 LSLLHELKTKTDEKVVVISNYTQTLDIIEGHCSSEGYTSARLDGSTATKTRDQIVTSFNN 700
+L +L+ T+ +V++ T + I+E + + + RLDG+T ++ R ++ FN
Sbjct: 1052 DRILPKLRA-TNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAALLKKFNE 1110
Query: 701 DPS-IFVFLLSAKSGGVGLNLIGASRLVLFDNDWNPSIDLQAMSRIHRDGQRRPCFIYRL 759
S F+FLLS ++GG+GLNL A +V+FD+DWNP DLQA R HR GQ+ + RL
Sbjct: 1111 PGSQYFIFLLSTRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRL 1170
Query: 760 VTTGCIDEKILQRQLMKIALSKKFLDSATDQSKN 793
T ++EKIL K+ + +K + + K+
Sbjct: 1171 CTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKS 1204
>Hs21071048 [BK] KOG0386 Chromatin remodeling complex SWI/SNF component SWI2 and
related ATPases (DNA/RNA helicase superfamily)
Length = 1586
Score = 187 bits (476), Expect = 5e-47
Identities = 147/514 (28%), Positives = 255/514 (49%), Gaps = 55/514 (10%)
Query: 300 KGDESMILERDDDIKGCLLADEMGLGKXXXXXXXXXXXXKQT----PYPTIINQRGVTLA 355
+G E M+ ++++ G +LADEMGLGK + PY
Sbjct: 726 QGLEWMVSLYNNNLNG-ILADEMGLGKTIQTIALITYLMEHKRLNGPY------------ 772
Query: 356 GEISKVLIVCPVTLIGNWKKEFKKWLPMNRIGVLTLHSRNSPTEDKAQVRSFLKVPRT-- 413
LI+ P++ + NW EF KW P V+ + + +P A RS + R+
Sbjct: 773 ------LIIVPLSTLSNWTYEFDKWAP----SVVKISYKGTP----AMRRSLVPQLRSGK 818
Query: 414 YQVLIVGYEKLLSIKDELQNEKRNLDLVICDEGHRLKNKDSKILKVLQSLDIE-KKIVLS 472
+ VL+ YE + IKD+ K +I DEGHR+KN K+ +VL + + ++I+L+
Sbjct: 819 FNVLLTTYEYI--IKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLT 876
Query: 473 GTPIQNDLEEFYTIIDFINPGILGSFGRFKREYILPIARSRD-VNAKQNQTLVEQGLLRS 531
GTP+QN L E + +++F+ P I S F++ + P A + + V+ + +T++ ++R
Sbjct: 877 GTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGERVDLNEEETIL---IIR- 932
Query: 532 DQLIEITKRFILRRTNEILQQYLPPRTDLIIFCKPTAEQ------VEAFHKILTEGQLNF 585
+L ++ + F+LRR + ++ LP + + +I C +A Q ++A +LT+G
Sbjct: 933 -RLHKVLRPFLLRRLKKEVESQLPEKVEYVIKCDMSALQKILYRHMQAKGILLTDGSEKD 991
Query: 586 SNMTFNSS--LGLITLFKKICNSTRLIK-TDPYYEERL--SQVQXXXXXXXXXXXXLRIL 640
+ + I +KICN + + + + E L S +L
Sbjct: 992 KKGKGGAKTLMNTIMQLRKICNHPYMFQHIEESFAEHLGYSNGVINGAELYRASGKFELL 1051
Query: 641 LSLLHELKTKTDEKVVVISNYTQTLDIIEGHCSSEGYTSARLDGSTATKTRDQIVTSFNN 700
+L +L+ T+ +V++ T + I+E + + + RLDG+T ++ R ++ FN
Sbjct: 1052 DRILPKLRA-TNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAALLKKFNE 1110
Query: 701 DPS-IFVFLLSAKSGGVGLNLIGASRLVLFDNDWNPSIDLQAMSRIHRDGQRRPCFIYRL 759
S F+FLLS ++GG+GLNL A +V+FD+DWNP DLQA R HR GQ+ + RL
Sbjct: 1111 PGSQYFIFLLSTRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRL 1170
Query: 760 VTTGCIDEKILQRQLMKIALSKKFLDSATDQSKN 793
T ++EKIL K+ + +K + + K+
Sbjct: 1171 CTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKS 1204
>YER164w [K] KOG0384 Chromodomain-helicase DNA-binding protein
Length = 1468
Score = 186 bits (473), Expect = 1e-46
Identities = 165/603 (27%), Positives = 269/603 (44%), Gaps = 100/603 (16%)
Query: 212 KVPPAQKQLVDQPTVKSALPPLSQELIGQITYSPLFDPVSIKDPLIMNKTENHKVSVIVD 271
K+ P Q + LP S Q P F+ +S++ P I
Sbjct: 329 KLAPEQVKHFQNRENSKILPQYSSNYTSQ---RPRFEKLSVQPPFIKGGE---------- 375
Query: 272 PLLSKTLRPHQREGVKFLYDCVMNMVHTKGDESMILERDDDIKGCLLADEMGLGKXXXXX 331
LR Q G+ + M + +KGD +LADEMGLGK
Sbjct: 376 ------LRDFQLTGINW-----MAFLWSKGDNG------------ILADEMGLGKTVQTV 412
Query: 332 XXXXXXXKQTPYPTIINQRGVTLAGEISKVLIVCPVTLIGNWKKEFKKWLP-MNRIGVLT 390
+ + +IV P++ + W F+KW P +N I
Sbjct: 413 AFISWL--------------IFARRQNGPHIIVVPLSTMPAWLDTFEKWAPDLNCI---- 454
Query: 391 LHSRNSPTEDKAQVRSFLKVPRT-------YQVLIVGYEKLLSIKDELQNEKRNLDLVIC 443
+ N + D + F PR + VL+ YE +L + EL + K +
Sbjct: 455 CYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRAELGSIK--WQFMAV 512
Query: 444 DEGHRLKNKDSKILKVLQSLDIEKKIVLSGTPIQNDLEEFYTIIDFINPGILGSFGRFKR 503
DE HRLKN +S + + L S + +++++GTP+QN+++E +++F+ P GRF
Sbjct: 513 DEAHRLKNAESSLYESLNSFKVANRMLITGTPLQNNIKELAALVNFLMP------GRFTI 566
Query: 504 EYILPIARSRDVNAKQNQTLVEQGLLRSDQLIEITKRFILRRTNEILQQYLPPRTDLIIF 563
+ + +NQ ++ + L + FILRR + +++ LP +T+ I+
Sbjct: 567 DQEIDF---------ENQDEEQEEYIH--DLHRRIQPFILRRLKKDVEKSLPSKTERILR 615
Query: 564 CKPTAEQVEAFHKILTEGQLNFSNMTFNSSLGLITLFKKICNSTRLIKTDPYY----EER 619
+ + Q E + ILT+ N+S +T + G +L I N + PY EER
Sbjct: 616 VELSDVQTEYYKNILTK---NYSALTAGAKGGHFSLL-NIMNELKKASNHPYLFDNAEER 671
Query: 620 LSQV--------QXXXXXXXXXXXXLRILLSLLHELKTKTDEKVVVISNYTQTLDIIEGH 671
+ Q + + +L LL LK K +V++ S + LDI+ +
Sbjct: 672 VLQKFGDGKMTRENVLRGLIMSSGKMVLLDQLLTRLK-KDGHRVLIFSQMVRMLDILGDY 730
Query: 672 CSSEGYTSARLDGSTATKTRDQIVTSFNN-DPSIFVFLLSAKSGGVGLNLIGASRLVLFD 730
S +G RLDG+ + R + FN+ D + FVFLLS ++GG+G+NL+ A +V+FD
Sbjct: 731 LSIKGINFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLSTRAGGLGINLMTADTVVIFD 790
Query: 731 NDWNPSIDLQAMSRIHRDGQRRPCFIYRLVTTGCIDEKILQRQLMKIALSKKFLD-SATD 789
+DWNP DLQAM+R HR GQ+ +YRLV+ ++E++L+R K+ L + TD
Sbjct: 791 SDWNPQADLQAMARAHRIGQKNHVMVYRLVSKDTVEEEVLERARKKMILEYAIISLGVTD 850
Query: 790 QSK 792
+K
Sbjct: 851 GNK 853
>ECU01g0350 [K] KOG0384 Chromodomain-helicase DNA-binding protein
Length = 1251
Score = 186 bits (473), Expect = 1e-46
Identities = 143/539 (26%), Positives = 246/539 (45%), Gaps = 86/539 (15%)
Query: 314 KGCLLADEMGLGKXXXXXXXXXXXXKQTPYPTIINQRGVTLAGEISKVLIVCPVTLIGNW 373
+ C++ADEMGLGK + Y + VL+V P+++I +W
Sbjct: 321 QSCIMADEMGLGKTVQSVTFINTLFTKYDY--------------CAPVLVVTPLSIIPHW 366
Query: 374 KKEFKKWLPMNRIGVLTLHSRNSPTEDKAQVRSFLKVP----RTYQVLIVGYEKLLSIKD 429
++EF+ W + VL H A+ LK R + VLI Y+ +++ ++
Sbjct: 367 EREFEAWTDLR---VLKYHENRPGRALIAEYEFVLKKNNLEIRLFDVLITTYDTVMAEQE 423
Query: 430 ELQNEKRNLDLVICDEGHRLKNKDSKILKVLQSLDIEKKIVLSGTPIQNDLEEFYTIIDF 489
L + + + I DE HRLKN SK +L++L K++LSGTP+QN++ E +++++F
Sbjct: 424 HLS--QFHFSVGIFDEAHRLKNAKSKAATILRTLKFNHKVLLSGTPLQNNISELWSLLNF 481
Query: 490 INPGILGSFGRFKREYILPIARSRDVNAKQNQTLVEQGLLRSDQLIEITKRFILRRTNEI 549
I+P S F E+ + ++N + QGLLR +LRR E
Sbjct: 482 IDPMRFSSLPHFLGEF-----KMENINDVEKL----QGLLRP---------LMLRRMKED 523
Query: 550 LQQYLPPRTDLIIFCKPTAEQVEAFHKILTEGQLNFSNMTFNSS----LGLITLFKKICN 605
+++ +P + + II T Q + F++ + E + F S L ++ +K C
Sbjct: 524 VEKSIPTKEETIIEVALTMIQ-KRFYRAILEKNIEFLTKGGKESAPNLLNVMMELRKCCI 582
Query: 606 STRLIK------TDPYYEER-------------------------------LSQVQXXXX 628
LIK Y +++ +S +
Sbjct: 583 HPYLIKGAEEQILSGYLKKKRERSKAEGAENDITLTSEVLNEDEHQDGNSVISDIDEYYK 642
Query: 629 XXXXXXXXLRILLSLLHELKTKTDEKVVVISNYTQTLDIIEGHCSSEGYTSARLDGSTAT 688
L +L LL +LK KV++ S T+ LD++ + + Y R+DG T
Sbjct: 643 IFIQSSGKLVLLDKLLGKLKD--GHKVLIFSQMTRCLDLLAEYLAYRKYKYERIDGGART 700
Query: 689 KTRDQIVTSFNNDPS-IFVFLLSAKSGGVGLNLIGASRLVLFDNDWNPSIDLQAMSRIHR 747
+ R + F++ S +FVFLLS ++GGVG+NL A +++FD+DWNP DLQA +R HR
Sbjct: 701 ENRQAAIDRFSDKTSDVFVFLLSTRAGGVGINLTAADTVIIFDSDWNPQNDLQAQARCHR 760
Query: 748 DGQRRPCFIYRLVTTGCIDEKILQRQLMKIALSKKFLDSATDQSKNDDDLFQQEELKDL 806
GQ +YRLVT + ++ + +K+ L + L T + + + +++ ++ L
Sbjct: 761 IGQTSEVKVYRLVTENTYEREMFDKAGLKLGLDRAVLQKMTFEEQKSEKTRKKDAIETL 819
>CE27114 [BK] KOG0386 Chromatin remodeling complex SWI/SNF component SWI2
and related ATPases (DNA/RNA helicase superfamily)
Length = 1336
Score = 186 bits (472), Expect = 1e-46
Identities = 138/501 (27%), Positives = 248/501 (48%), Gaps = 52/501 (10%)
Query: 300 KGDESMILERDDDIKGCLLADEMGLGKXXXXXXXXXXXXKQTPYPTIINQRGVTLAGEIS 359
KG E M+ ++++ G +LADEMGLGK TI +T EI
Sbjct: 372 KGLEWMVSLFNNNLNG-ILADEMGLGK------------------TIQTIAFITYLMEIK 412
Query: 360 KV----LIVCPVTLIGNWKKEFKKWLPMNRIGVLTLHSRNSPTEDKAQVRSFLKVPRTYQ 415
K L++ P++ + NW+ EF KW + L + P E + +K + +
Sbjct: 413 KTSGPFLVIVPLSTVPNWQNEFDKWAAN-----VHLIAYKGPKETRKVFEPIIKSGK-FN 466
Query: 416 VLIVGYEKLLSIKDELQNEKRNLDLVICDEGHRLKNKDSKILKVLQS-LDIEKKIVLSGT 474
VL+ +E + I+++ K +I DEGHRLKN+ K+ ++L + +++++++GT
Sbjct: 467 VLLTTFEYV--IREKALLGKLRWKYMIIDEGHRLKNQHCKLTEMLNTRFQCQRRLLITGT 524
Query: 475 PIQNDLEEFYTIIDFINPGILGSFGRFKREYILPIARSRD-VNAKQNQTLVEQGLLRSDQ 533
P+QN L E + +++F+ P I S F++ + P A + + V Q +T++ ++R +
Sbjct: 525 PLQNKLPELWALLNFLLPSIFSSCSTFEQWFNAPFATTGEKVELTQEETML---IIR--R 579
Query: 534 LIEITKRFILRRTNEILQQYLPPRTDLIIFCKPTAEQVEAFHK----ILTEGQLNFSNMT 589
L ++ + F+LRR + ++ LP + + ++ C +A Q + +L +G+ N + +
Sbjct: 580 LHKVLRPFLLRRLKKEVESELPDKMEFVVRCDMSALQKVLYKHMQKGLLLDGKTNTGSKS 639
Query: 590 FNSSLGLITLFKKICNSTRLIKTDPYYEERLSQVQXXXXXXXXXXXXLRILLSLLHELKT 649
+++ +K+CN L + EE + L LL +
Sbjct: 640 LRNTM---IHLRKLCNHPFLFEN---VEESCRNFWDARFISAVDLYRVSGKLELLSRILP 693
Query: 650 K---TDEKVVVISNYTQTLDIIEGHCSSEGYTSARLDGSTATKTRDQIVTSFNNDPS-IF 705
K T +V++ T + I+E + RLDGST R ++ FN S F
Sbjct: 694 KLQATGHRVLMFFQMTSMMTIVEDFLAGGTIQYLRLDGSTKPDERGALLDKFNAPNSEYF 753
Query: 706 VFLLSAKSGGVGLNLIGASRLVLFDNDWNPSIDLQAMSRIHRDGQRRPCFIYRLVTTGCI 765
+F+LS ++GG+GLNL A +++FD+DWNP D+QA R HR GQ+ ++RL+T +
Sbjct: 754 LFMLSTRAGGLGLNLQTADTVIIFDSDWNPHQDMQAQDRAHRIGQKAEVRVFRLITANSV 813
Query: 766 DEKILQRQLMKIALSKKFLDS 786
+EKIL K+ + +K + +
Sbjct: 814 EEKILAAARYKLNVDEKVIQA 834
>CE00789 [K] KOG0385 Chromatin remodeling complex WSTF-ISWI small subunit
Length = 971
Score = 186 bits (472), Expect = 1e-46
Identities = 130/468 (27%), Positives = 231/468 (48%), Gaps = 47/468 (10%)
Query: 317 LLADEMGLGKXXXXXXXXXXXXKQTPYPTIINQRGVTLAGEISKVLIVCPVTLIGNWKKE 376
+LADEMGLGK + S L++ P + + NW E
Sbjct: 116 ILADEMGLGKTLQTISMIGYMKHYK--------------NKASPHLVIVPKSTLQNWANE 161
Query: 377 FKKWLPMNRIGVLTLHSRNSPTEDKAQVRSFLKVPRTYQVLIVGYEKLLSIKDELQNEKR 436
FKKW P VL + QV + +P+ + V YE +L +K +L+ K
Sbjct: 162 FKKWCPSINAVVLI-----GDEAARNQVLRDVILPQKFDVCCTTYEMMLKVKTQLK--KL 214
Query: 437 NLDLVICDEGHRLKNKDSKILKVLQSLDIEKKIVLSGTPIQNDLEEFYTIIDFINPGILG 496
N +I DE HR+KN+ SK+ + ++ L+ E +++++GTP+QN+L E + +++F+ P I
Sbjct: 215 NWRYIIIDEAHRIKNEKSKLSETVRELNSENRLLITGTPLQNNLHELWALLNFLLPDIFT 274
Query: 497 SFGRFKREYILPIARSRDVNAKQNQTLVEQGLLRSDQLIEITKRFILRRTNEILQQYLPP 556
S F + S D + N LV++ L ++ + F+LRR +++ L P
Sbjct: 275 SSDDFDSWF------SNDAMSG-NTDLVQR-------LHKVLQPFLLRRIKSDVEKSLLP 320
Query: 557 RTDLIIFCKPTAEQVEAFHKILTEGQ--LNFSNMTFNSSLGLITLFKKICNSTRLIKTDP 614
+ ++ ++ + Q E + K+L + +N + + L I + + C + P
Sbjct: 321 KKEVKVYVGLSKMQREWYTKVLMKDIDIINGAGKVEKARLMNILMHLRKCVN------HP 374
Query: 615 YYEERLSQVQ--XXXXXXXXXXXXLRILLSLLHELKTKTDEKVVVISNYTQTLDIIEGHC 672
Y + + +L LL + K + +V++ S +++ LD++E C
Sbjct: 375 YLFDGAEPGPPFTTDQHLVDNSGKMVVLDKLLMKFKEQ-GSRVLIFSQFSRMLDLLEDFC 433
Query: 673 SSEGYTSARLDGSTATKTRDQIVTSFNN-DPSIFVFLLSAKSGGVGLNLIGASRLVLFDN 731
Y RLDGST + R + ++N D F+F+L+ ++GG+G+NL A ++++D+
Sbjct: 434 WWRHYEYCRLDGSTPHEDRSNAIEAYNAPDSKKFIFMLTTRAGGLGINLATADVVIIYDS 493
Query: 732 DWNPSIDLQAMSRIHRDGQRRPCFIYRLVTTGCIDEKILQRQLMKIAL 779
DWNP DLQAM R HR GQ++ ++RL+T +DE+I+++ K+ L
Sbjct: 494 DWNPQSDLQAMDRAHRIGQKKQVRVFRLITENTVDERIIEKAEAKLRL 541
>YAL019w [B] KOG0389 SNF2 family DNA-dependent ATPase
Length = 1131
Score = 186 bits (471), Expect = 2e-46
Identities = 152/546 (27%), Positives = 244/546 (43%), Gaps = 88/546 (16%)
Query: 316 CLLADEMGLGKXXXXXXXXXXXXKQTPYPTIINQRGVTLAGEISKVLIVCPVTLIGNWKK 375
C+LAD+MGLGK Y IN+ G L +V P + + NW +
Sbjct: 593 CILADDMGLGKTCQVISFFA-------YLKQINEPGPHL--------VVVPSSTLENWLR 637
Query: 376 EFKKWLPMNRIGVLTLHSRNSPTEDKAQVRSFL-KVPRTYQVLIVGYEKLLSIKDELQNE 434
EF+K+ P L + +++ ++R L + Y V++ Y K ++
Sbjct: 638 EFQKFAP-----ALKIEPYYGSLQEREELRDILERNAGKYDVIVTTYNLAAGNKYDVSFL 692
Query: 435 K-RNLDLVICDEGHRLKNKDSKILKVLQSLDIEKKIVLSGTPIQNDLEEFYTIIDFINPG 493
K RN ++V+ DEGH LKN S+ L + +++L+GTP+QN+L+E ++++FI P
Sbjct: 693 KNRNFNVVVYDEGHMLKNSTSERFAKLMKIRANFRLLLTGTPLQNNLKELMSLLEFIMPN 752
Query: 494 ILGSFGRFKREYILPIARSRDVNAKQNQTLVEQGLLRSDQLIEITKRFILRRTNEILQQY 553
+ S A++ D N N L ++ + R+ ++ K FILRR + + ++
Sbjct: 753 LFISKKESFDAIFKQRAKTTDDNKNHNPLLAQEAITRAKTMM---KPFILRRRKDQVLKH 809
Query: 554 LPPRTDLIIFCKPTAEQVEAFHK----------ILTEGQL-----NFSNMTFNSSLGLIT 598
LPP+ I +C+ A Q + + K ++ +G+L S + +SS LI
Sbjct: 810 LPPKHTHIQYCELNAIQKKIYDKEIQIVLEHKRMIKDGELPKDAKEKSKLQSSSSKNLIM 869
Query: 599 ----------LFKKICNSTRLIKT------DPYYEERLSQVQXXXXXXXXXXXXLR---- 638
LF+ I N + K +P Y E ++ L
Sbjct: 870 ALRKASLHPLLFRNIYNDKIITKMSDAILDEPAYAENGNKEYIKEDMSYMTDFELHKLCC 929
Query: 639 -----------------------ILLSLLHELKTKTDEKVVVISNYTQTLDIIEGHCSSE 675
L LL + EKV++ S +TQ LDI+E S+
Sbjct: 930 NFPNTLSKYQLHNDEWMQSGKIDALKKLLKTIIVDKQEKVLIFSLFTQVLDILEMVLSTL 989
Query: 676 GYTSARLDGSTATKTRDQIVTSFNNDPSIFVFLLSAKSGGVGLNLIGASRLVLFDNDWNP 735
Y RLDGST R ++ F D I +F+LS K+GG G+NL+ A+ +++FD +NP
Sbjct: 990 DYKFLRLDGSTQVNDRQLLIDKFYEDKDIPIFILSTKAGGFGINLVCANNVIIFDQSFNP 1049
Query: 736 SIDLQAMSRIHRDGQRRPCFIYRLVTTGCIDEKILQRQLMKIALSKKFLDSATDQSKNDD 795
D QA R HR GQ + I L+T I+EKI Q +A +K LDS + K
Sbjct: 1050 HDDRQAADRAHRVGQTKEVNITTLITKDSIEEKIHQ-----LAKNKLALDSYISEDKKSQ 1104
Query: 796 DLFQQE 801
D+ + +
Sbjct: 1105 DVLESK 1110
>At5g66750 [K] KOG0385 Chromatin remodeling complex WSTF-ISWI small subunit
Length = 764
Score = 186 bits (471), Expect = 2e-46
Identities = 152/536 (28%), Positives = 258/536 (47%), Gaps = 90/536 (16%)
Query: 272 PLLSK-TLRPHQREGVKFLYDCVMNMVHTKGDESMILERDDDIKGCLLADEMGLGKXXXX 330
PLL+ L+ +Q +GVK+L N ++ +LAD+MGLGK
Sbjct: 195 PLLTGGQLKSYQLKGVKWLISLWQNGLNG-----------------ILADQMGLGKTIQT 237
Query: 331 XXXXXXXXKQTPYPTIINQRGVTLAGEISKVLIVCPVTLIGNWKKEFKKWLPMNRIGVLT 390
+ + +G L G L++ P++ + NW E ++ P I +
Sbjct: 238 IGF------------LSHLKGNGLDGPY---LVIAPLSTLSNWFNEIARFTPS--INAII 280
Query: 391 LHSRNSPTEDKAQVRSFLKVPRTYQVLIVGYEKLLSIKDELQNEKRNL-----DLVICDE 445
H + ++ + V + ++I YE ++ + KR L V+ DE
Sbjct: 281 YHGDKNQRDELRRKHMPKTVGPKFPIVITSYEVAMN------DAKRILRHYPWKYVVIDE 334
Query: 446 GHRLKNKDSKILKVLQSLDIEKKIVLSGTPIQNDLEEFYTIIDFINPGILGSFGRFKREY 505
GHRLKN K+L+ L+ L ++ K++L+GTP+QN+L E +++++FI P I S F+ +
Sbjct: 335 GHRLKNHKCKLLRELKHLKMDNKLLLTGTPLQNNLSELWSLLNFILPDIFTSHDEFESWF 394
Query: 506 ILPIARSRDVNAK-QNQTLVEQGLLRSDQLIE----ITKRFILRRTNEILQQYLPPRTDL 560
D + K +N+ E+ R Q++ I + FILRR ++ LP + ++
Sbjct: 395 --------DFSEKNKNEATKEEEEKRRAQVVSKLHGILRPFILRRMKCDVELSLPRKKEI 446
Query: 561 IIFCKPTAEQVEAFHKILTEGQLNFSNMTFNSSLG---------LITLFKKICNSTRLIK 611
I++ T Q + F + L L +++ N+ G L+ +K CN L++
Sbjct: 447 IMYATMTDHQ-KKFQEHLVNNTLE-AHLGENAIRGQGWKGKLNNLVIQLRKNCNHPDLLQ 504
Query: 612 TD-------PYYEERLSQVQXXXXXXXXXXXXLRILLSLLHELKTKTDEKVVVISNYTQT 664
P EE + Q R+L LL L + KV++ S +T+
Sbjct: 505 GQIDGSYLYPPVEEIVGQC-----------GKFRLLERLLVRLFAN-NHKVLIFSQWTKL 552
Query: 665 LDIIEGHCSSEGYTSARLDGSTATKTRDQIVTSFNNDPS-IFVFLLSAKSGGVGLNLIGA 723
LDI++ + S +G+ R+DGS R + + F+++ S +FLLS ++GG+G+NL A
Sbjct: 553 LDIMDYYFSEKGFEVCRIDGSVKLDERRRQIKDFSDEKSSCSIFLLSTRAGGLGINLTAA 612
Query: 724 SRLVLFDNDWNPSIDLQAMSRIHRDGQRRPCFIYRLVTTGCIDEKILQRQLMKIAL 779
+L+D+DWNP +DLQAM R HR GQ +P +YRL T I+ ++L+R K+ L
Sbjct: 613 DTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRLSTAQSIETRVLKRAYSKLKL 668
>7295870 [K] KOG0384 Chromodomain-helicase DNA-binding protein
Length = 1883
Score = 186 bits (471), Expect = 2e-46
Identities = 157/572 (27%), Positives = 266/572 (46%), Gaps = 83/572 (14%)
Query: 277 TLRPHQREGVKFLYDCVMNMVHTKGDESMILERDDDIKGCLLADEMGLGKXXXXXXXXXX 336
TLR +Q +G+ +L +H+ E+ ++ LADEMGLGK
Sbjct: 527 TLRDYQMDGLNWL-------LHSWCKENSVI----------LADEMGLGKTIQTICFLYS 569
Query: 337 XXKQTPYPTIINQRGVTLAGEISKVLIVCPVTLIGNWKKEFKKWLP-MNRIGVL-TLHSR 394
K + L V P++ + W++EF W P MN + L + SR
Sbjct: 570 LFK--------------IHHLYGPFLCVVPLSTMTAWQREFDLWAPDMNVVTYLGDIKSR 615
Query: 395 NSPTEDKAQVRSFLKVPRTYQVLIVGYEKLLSIKDELQNEKRNLDLVICDEGHRLKNKDS 454
+ + Q S ++ + ++ YE +L K L + LV DE HRLKN DS
Sbjct: 616 ELIQQYEWQFESSKRLK--FNCILTTYEIVLKDKQFLGTLQWAALLV--DEAHRLKNDDS 671
Query: 455 KILKVLQSLDIEKKIVLSGTPIQNDLEEFYTIIDFINPGILGSFGRFKREYILPIARSRD 514
+ K L+ D +++++GTP+QN L+E + ++ FI P ++ F+
Sbjct: 672 LLYKSLKEFDTNHRLLITGTPLQNSLKELWALLHFIMPDKFDTWENFE------------ 719
Query: 515 VNAKQNQTLVEQGLLRSDQLIEITKRFILRRTNEILQQYLPPRTDLIIFCKPTAEQVEAF 574
Q+ ++G R Q +E +ILRR + +++ LP + + I+ + T+ Q + +
Sbjct: 720 ---VQHGNAEDKGYTRLHQQLE---PYILRRVKKDVEKSLPAKVEQILRVEMTSLQKQYY 773
Query: 575 HKILTEGQLNFSNM------TFNSSLGLITLFKKICNSTRLIKTDPYYEERLSQVQXXXX 628
ILT+ NF + + ++ L ++ KK CN LI+ + L Q +
Sbjct: 774 KWILTK---NFDALRKGKRGSTSTFLNIVIELKKCCNHAALIRPSEFELMGLQQDEALQT 830
Query: 629 XXXXXXXXLRILLSLLHELKTKTDEKVVVISNYTQTLDIIEGHCSSEGYTSARLDGSTAT 688
L +L LL LK +T +V++ S + LD++ + + RLDGS
Sbjct: 831 LLKGSGK-LVLLDKLLCRLK-ETGHRVLIFSQMVRMLDVLADYLQKRHFPFQRLDGSIKG 888
Query: 689 KTRDQIVTSFNNDPSI-FVFLLSAKSGGVGLNLIGASRLVLFDNDWNPSIDLQAMSRIHR 747
+ R Q + FN + S F FLLS ++GG+G+NL A +++FD+DWNP DLQA +R HR
Sbjct: 889 EMRRQALDHFNAEGSQDFCFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAQARAHR 948
Query: 748 DGQRRPCFIYRLVTTGCIDEKILQRQLMKIAL-----------SKKFLDSATDQSKNDDD 796
GQ+ IYRLVT ++E+I++R K+ L + LD + + ++ +
Sbjct: 949 IGQKNQVNIYRLVTARSVEEQIVERAKQKMVLDHLVIQRMDTTGRTVLDKSGNGHSSNSN 1008
Query: 797 LFQQEELKDLFTINLSTL-----SNTHDLICN 823
F +++L + L + DL+C+
Sbjct: 1009 PFNKDDLSAILKFGAEELFKDEQEHDDDLVCD 1040
>At1g08600 [K] KOG1015 Transcription regulator XNP/ATRX DEAD-box superfamily
Length = 1447
Score = 185 bits (470), Expect = 2e-46
Identities = 160/596 (26%), Positives = 269/596 (44%), Gaps = 102/596 (17%)
Query: 267 SVIVDPLLSKTLRPHQREGVKFLYDCVMNMVHT--KGDESMILERDDDIKGCLLADEMGL 324
+V V +S L+ HQ G++F+++ ++ + GD+ + GC+LA MGL
Sbjct: 676 AVRVPRSISAKLKVHQVTGIRFMWENIIQSISRVKSGDKGL---------GCILAHTMGL 726
Query: 325 GKXXXXXXXXXXXXKQTPYPTIINQRGVTLAGEISKVLIVCPVTLIGNWKKEFKKWLPMN 384
GK R V L + LIV PV ++ NW+ EF+KW+P
Sbjct: 727 GKTFQVIAFLYTA-----------MRCVDLG--LKTALIVTPVNVLHNWRSEFEKWMPSE 773
Query: 385 ----RIGVLTLHSRNSPTEDKAQVRS----FLKVPRTYQVLIVGYE-KLLSIKDELQNEK 435
RI +L SR + + R FL ++ L +G K L+ + N
Sbjct: 774 VKPLRIFMLGDVSRERRFDLLTKWRKKGGVFLMGYTNFRNLSLGRGVKDLNAARGICNAL 833
Query: 436 RN-LDLVICDEGHRLKNKDSKILKVLQSLDIEKKIVLSGTPIQNDLEEFYTIIDFINPGI 494
R+ D+++CDE H +KN + + L+ + +++I L+G+P+QN+L E+Y ++DF+ G
Sbjct: 834 RDGPDILVCDEAHIIKNTKADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGF 893
Query: 495 LGSFGRFKREYILPIARSRDVNAKQNQTLVEQGLLRSDQLIEITKRFILRRTNEILQQYL 554
LGS F+ + PI + +N+ + RS L E K F+ R ++++ L
Sbjct: 894 LGSSPEFRNRFQNPIENGQHMNSTAEDVKIMN--QRSHILYEQLKGFVQRMDMNVVKKDL 951
Query: 555 PPRTDLIIFCKPTAEQVEAFHKIL-----TEGQL------NF------------------ 585
PP+T +I K + Q + + L ++G+ NF
Sbjct: 952 PPKTVFVISVKLSPLQRILYQRFLELYGFSDGRTDERMRKNFFAAYQVLAQILNHPGIPQ 1011
Query: 586 --SNMTFNSSLGLITLFKKICNSTRLI------------------KTDPYYEER--LSQV 623
S + N G I C+S I K D Y ++ + +
Sbjct: 1012 LRSEDSKNGRRGSIVDIPDDCSSDENIDYNMVTGEKQRTMNDLQDKVDGYLQKDWWVDLL 1071
Query: 624 QXXXXXXXXXXXXLRILLSLLHELKTKTDEKVVVISNYTQTLDIIEGHCS---------- 673
Q + +LL +L + +K +V S TLD+IE + S
Sbjct: 1072 QKNNYKVSDFSGKMILLLDIL-SMSADVGDKALVFSQSIPTLDLIELYLSRVPRHGKQGK 1130
Query: 674 --SEGYTSARLDGSTATKTRDQIVTSFN--NDPSIFVFLLSAKSGGVGLNLIGASRLVLF 729
+G R+DG T + R ++V FN ++ + L+S ++G +G+NL A+R+++
Sbjct: 1131 FWKKGKDWYRIDGKTESSERQKLVDRFNEPDNKRVKCTLISTRAGSLGINLYAANRVIIV 1190
Query: 730 DNDWNPSIDLQAMSRIHRDGQRRPCFIYRLVTTGCIDEKILQRQLMKIALSKKFLD 785
D WNP+ DLQA+ R R GQ++P F YRL+ G I+EKI +RQ+ K L+ + +D
Sbjct: 1191 DGSWNPTYDLQAIFRAWRYGQKKPVFAYRLMARGTIEEKIYKRQVTKEGLAARVVD 1246
>SPAC1783.05 [K] KOG0384 Chromodomain-helicase DNA-binding protein
Length = 1373
Score = 185 bits (469), Expect = 3e-46
Identities = 144/514 (28%), Positives = 238/514 (46%), Gaps = 56/514 (10%)
Query: 317 LLADEMGLGKXXXXXXXXXXXXKQTPYPTIINQRGVTLAGEISKVLIVCPVTLIGNWKKE 376
+LADEMGLGK + Q G LIV P++ + W++
Sbjct: 412 ILADEMGLGKTVQTVCFLSYLVHS------LKQHG--------PFLIVVPLSTVPAWQET 457
Query: 377 FKKWLP-MNRIGVLTLHSRNSPTEDKAQVRSFLKVPRT------YQVLIVGYEKLLSIKD 429
W P +N I TE +A +R + T + +L+ YE +L K
Sbjct: 458 LANWTPDLNSI------CYTGNTESRANIREYEFYLSTNSRKLKFNILLTTYEYILKDKQ 511
Query: 430 ELQNEKRNLDLVICDEGHRLKNKDSKILKVLQSLDIEKKIVLSGTPIQNDLEEFYTIIDF 489
EL N + + DE HRLKN +S + + L +++++GTP+QN+L+E ++++F
Sbjct: 512 ELNNIR--WQYLAIDEAHRLKNSESSLYETLSQFRTANRLLITGTPLQNNLKELASLVNF 569
Query: 490 INPGILGSFGRFKREYILPIARSRDVNAKQNQTLVEQGLLRSDQLIEITKRFILRRTNEI 549
+ PG + YI NA+Q + + + L E + FILRR +
Sbjct: 570 LMPG---------KFYIRDELNFDQPNAEQERDIRD--------LQERLQPFILRRLKKD 612
Query: 550 LQQYLPPRTDLIIFCKPTAEQVEAFHKILTEGQLNFSNMTFN----SSLGLITLFKKICN 605
+++ LP +++ I+ + + Q E + ILT+ + T S L ++ KK+ N
Sbjct: 613 VEKSLPSKSERILRVELSDMQTEWYKNILTKNYRALTGHTDGRGQLSLLNIVVELKKVSN 672
Query: 606 STRLIK--TDPYYEERLSQVQXXXXXXXXXXXXLRILLSLLHELKTKTDEKVVVISNYTQ 663
L + + R + + +L LL LK +V++ S +
Sbjct: 673 HPYLFPGAAEKWMMGRKMTREDTLRGIIMNSGKMVLLDKLLQRLK-HDGHRVLIFSQMVR 731
Query: 664 TLDIIEGHCSSEGYTSARLDGSTATKTRDQIVTSFNN-DPSIFVFLLSAKSGGVGLNLIG 722
L+I+ + S GY RLDG+ R + FN D FVFLLS ++GG+G+NL
Sbjct: 732 MLNILGEYMSLRGYNYQRLDGTIPASVRRVSIDHFNAPDSPDFVFLLSTRAGGLGINLNT 791
Query: 723 ASRLVLFDNDWNPSIDLQAMSRIHRDGQRRPCFIYRLVTTGCIDEKILQRQLMKIALSKK 782
A +++FD+DWNP DLQAM+R HR GQ+ +YR ++ ++E IL+R K+ L
Sbjct: 792 ADTVIIFDSDWNPQADLQAMARAHRIGQKNHVNVYRFLSKDTVEEDILERARRKMILEYA 851
Query: 783 FLD-SATDQSKND-DDLFQQEELKDLFTINLSTL 814
+ T++SKN +D + +EL + S +
Sbjct: 852 IISLGVTEKSKNSKNDKYDAQELSAILKFGASNM 885
>Hs20533808 [R] KOG0383 Predicted helicase
Length = 1954
Score = 185 bits (469), Expect = 3e-46
Identities = 156/554 (28%), Positives = 252/554 (45%), Gaps = 79/554 (14%)
Query: 277 TLRPHQREGVKFLYDCVMNMVHTKGDESMILERDDDIKGCLLADEMGLGKXXXXXXXXXX 336
TL P+Q EG+ +L +G ++ +LADEMGLGK
Sbjct: 699 TLHPYQLEGLNWL-----RFSWAQGTDT------------ILADEMGLGKTVQTIVFLYS 741
Query: 337 XXKQTPYPTIINQRGVTLAGEISKVLIVCPVTLIGNWKKEFKKWLPMNRIGVLT------ 390
K+ + +G L+ P++ I NW++EF+ W P + T
Sbjct: 742 LYKEG------HSKG--------PYLVSAPLSTIINWEREFEMWAPDFYVVTYTGDKESR 787
Query: 391 --LHSRNSPTEDKAQVRSFLKVPRT-------YQVLIVGYEKLLSIKDELQNEKRNLDLV 441
+ ED A +RS KV R + VL+ YE L++I + LV
Sbjct: 788 SVIRENEFSFEDNA-IRSGKKVFRMKKEVQIKFHVLLTSYE-LITIDQAILGSIEWACLV 845
Query: 442 ICDEGHRLKNKDSKILKVLQSLDIEKKIVLSGTPIQNDLEEFYTIIDFINPGILGSFGRF 501
+ DE HRLKN SK +VL S I+ K++L+GTP+QN+LEE + +++F+ P + F
Sbjct: 846 V-DEAHRLKNNQSKFFRVLNSYKIDYKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGF 904
Query: 502 KREYILPIARSRDVNAKQNQTLVEQGLLRSDQLIEITKRFILRRTNEILQQYLPPRTDLI 561
E+ D++ K++Q +L ++ +LRR + + +P +T+LI
Sbjct: 905 LEEFA-------DIS-KEDQI---------KKLHDLLGPHMLRRLKADVFKNMPAKTELI 947
Query: 562 IFCKPTAEQVEAFHKILTEGQLNFSNMTFNSSLGLITLF---KKICNSTRLIKTDPYYEE 618
+ + + Q + + ILT ++ + + L+ + KK CN L
Sbjct: 948 VRVELSQMQKKYYKFILTRNFEALNSKGGGNQVSLLNIMMDLKKCCNHPYLFPVAAVEAP 1007
Query: 619 RLSQVQXXXXXXXXXXXXLRILLSLLHELKTKTDEKVVVISNYTQTLDIIEGHCSSEGYT 678
L L +L +L +L+ + +V++ S T+ LD++E EGY
Sbjct: 1008 VLPNGSYDGSSLVKSSGKLMLLQKMLKKLRDE-GHRVLIFSQMTKMLDLLEDFLEYEGYK 1066
Query: 679 SARLDGSTATKTRDQIVTSFNNDPSI-FVFLLSAKSGGVGLNLIGASRLVLFDNDWNPSI 737
R+DG R + + FN + F FLLS ++GG+G+NL A ++++D+DWNP
Sbjct: 1067 YERIDGGITGGLRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNPHN 1126
Query: 738 DLQAMSRIHRDGQRRPCFIYRLVTTGCIDEKILQRQLMKIALSKKFL--------DSATD 789
D+QA SR HR GQ + IYR VT ++E+I Q K+ L+ + S T
Sbjct: 1127 DIQAFSRAHRIGQNKKVMIYRFVTRASVEERITQVAKRKMMLTHLVVRPGLGSKSGSMTK 1186
Query: 790 QSKNDDDLFQQEEL 803
Q +D F EEL
Sbjct: 1187 QELDDILKFGTEEL 1200
>CE03657 [R] KOG0383 Predicted helicase
Length = 1787
Score = 185 bits (469), Expect = 3e-46
Identities = 156/558 (27%), Positives = 252/558 (44%), Gaps = 85/558 (15%)
Query: 253 KDPLIMNKTENHKVSVI----VDP-LLSKT---LRPHQREGVKFLYDCVMNMVHTKGDES 304
+D + + + K+ ++ V P +S+T L P+Q EG+ +L C N G ++
Sbjct: 583 EDEVTSRRKKREKIDILKKYEVQPDFISETGGNLHPYQLEGINWLRHCWSN-----GTDA 637
Query: 305 MILERDDDIKGCLLADEMGLGKXXXXXXXXXXXXKQTPYPTIINQRGVTLAGEISKVLIV 364
+LADEMGLGK K+ + +G LI
Sbjct: 638 ------------ILADEMGLGKTVQSLTFLYTLMKEG------HTKG--------PFLIA 671
Query: 365 CPVTLIGNWKKEFKKWLP----MNRIG------VLTLHS--------RNSPTEDKAQVRS 406
P++ I NW++E + W P + +G V+ H R P K +
Sbjct: 672 APLSTIINWEREAELWCPDFYVVTYVGDRESRMVIREHEFSFVDGAVRGGPKVSKIKTLE 731
Query: 407 FLKVPRTYQVLIVGYEKLLSIKDELQNEKRNLDLVICDEGHRLKNKDSKILKVLQSLDIE 466
LK + VL+ YE + K L + + ++ DE HRLKN S K L+ +I+
Sbjct: 732 NLK----FHVLLTSYECINMDKAILSSI--DWAALVVDEAHRLKNNQSTFFKNLREYNIQ 785
Query: 467 KKIVLSGTPIQNDLEEFYTIIDFINPGILGSFGRFKREYILPIARSRDVNAKQNQTLVEQ 526
+++L+GTP+QN+LEE + +++F+ P F E+ +K++Q
Sbjct: 786 YRVLLTGTPLQNNLEELFHLLNFLAPDRFNQLESFTAEF--------SEISKEDQI---- 833
Query: 527 GLLRSDQLIEITKRFILRRTNEILQQYLPPRTDLIIFCKPTAEQVEAFHKILTEG--QLN 584
++L + +LRR + +P + +LI+ + +A Q + + ILT LN
Sbjct: 834 -----EKLHNLLGPHMLRRLKADVLTGMPSKQELIVRVELSAMQKKYYKNILTRNFDALN 888
Query: 585 FSNM-TFNSSLGLITLFKKICNSTRLIKTDPYYEERLSQVQXXXXXXXXXXXXLRILLSL 643
N T S + +I KK CN L +L +L +
Sbjct: 889 VKNGGTQMSLINIIMELKKCCNHPYLFMKACLEAPKLKNGMYEGSALIKNAGKFVLLQKM 948
Query: 644 LHELKTKTDEKVVVISNYTQTLDIIEGHCSSEGYTSARLDGSTATKTRDQIVTSFNNDPS 703
L +LK +V++ S T LDI+E C EGY R+DGS + R + +N +
Sbjct: 949 LRKLKDG-GHRVLIFSQMTMMLDILEDFCDVEGYKYERIDGSITGQQRQDAIDRYNAPGA 1007
Query: 704 I-FVFLLSAKSGGVGLNLIGASRLVLFDNDWNPSIDLQAMSRIHRDGQRRPCFIYRLVTT 762
FVFLLS ++GG+G+NL A ++++D+DWNP D+QA SR HR GQ+ IYR VT
Sbjct: 1008 KQFVFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRLGQKHKVMIYRFVTK 1067
Query: 763 GCIDEKILQRQLMKIALS 780
G ++E+I K+ L+
Sbjct: 1068 GSVEERITSVAKKKMLLT 1085
>Hs4557447 [K] KOG0384 Chromodomain-helicase DNA-binding protein
Length = 1709
Score = 184 bits (467), Expect = 6e-46
Identities = 142/470 (30%), Positives = 224/470 (47%), Gaps = 45/470 (9%)
Query: 316 CLLADEMGLGKXXXXXXXXXXXXKQTPYPTIINQRGVTLAGEISKVLIVCPVTLIGNWKK 375
C+LADEMGLGK + L+V P++ + +W++
Sbjct: 502 CILADEMGLGKTIQTISFLNYLFHEHQL--------------YGPFLLVVPLSTLTSWQR 547
Query: 376 EFKKWL-PMNRIGVL-TLHSRNSPTEDKAQVRSFLKVPRTYQVLIVGYEKLLSIKDELQN 433
E + W MN + L ++SRN + ++ + +L+ YE LL KD+
Sbjct: 548 EIQTWASQMNAVVYLGDINSRNMIRTHEWTHHQTKRL--KFNILLTTYEILL--KDKAFL 603
Query: 434 EKRNLDLVICDEGHRLKNKDSKILKVLQSLDIEKKIVLSGTPIQNDLEEFYTIIDFINPG 493
N + DE HRLKN DS + K L +++++GTP+QN L+E ++++ FI P
Sbjct: 604 GGLNWAFIGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSLLHFIMPE 663
Query: 494 ILGSFGRFKREYILPIARSRDVNAKQNQTLVEQGLLRSDQLIEITKRFILRRTNEILQQY 553
S+ F+ E+ + R E G + +E F+LRR + +++
Sbjct: 664 KFSSWEDFEEEH----GKGR-----------EYGYASLHKELE---PFLLRRVKKDVEKS 705
Query: 554 LPPRTDLIIFCKPTAEQVEAFHKILTEGQLNFSNMTFNSSLGLITL---FKKICNSTRLI 610
LP + + I+ + +A Q + + ILT S + S+ G + + KK CN LI
Sbjct: 706 LPAKVEQILRMEMSALQKQYYKWILTRNYKALSKGSKGSTSGFLNIMMELKKCCNHCYLI 765
Query: 611 KTDPYYEERLSQVQXXXXXXXXXXXXLRILLSLLHELKTKTDEKVVVISNYTQTLDIIEG 670
K P Q L +L LL L+ + +V++ S + LDI+
Sbjct: 766 K--PPDNNEFYNKQEALQHLIRSSGKLILLDKLLIRLRER-GNRVLIFSQMVRMLDILAE 822
Query: 671 HCSSEGYTSARLDGSTATKTRDQIVTSFNNDPS-IFVFLLSAKSGGVGLNLIGASRLVLF 729
+ + RLDGS + R Q + FN + S F FLLS ++GG+G+NL A +V+F
Sbjct: 823 YLKYRQFPFQRLDGSIKGELRKQALDHFNAEGSEDFCFLLSTRAGGLGINLASADTVVIF 882
Query: 730 DNDWNPSIDLQAMSRIHRDGQRRPCFIYRLVTTGCIDEKILQRQLMKIAL 779
D+DWNP DLQA +R HR GQ++ IYRLVT G ++E IL+R K+ L
Sbjct: 883 DSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGSVEEDILERAKKKMVL 932
>Hs4557451 [R] KOG0383 Predicted helicase
Length = 1944
Score = 182 bits (463), Expect = 2e-45
Identities = 140/482 (29%), Positives = 225/482 (46%), Gaps = 52/482 (10%)
Query: 317 LLADEMGLGKXXXXXXXXXXXXKQTPYPTIINQRGVTLAGEISKVLIVCPVTLIGNWKKE 376
+LADEMGLGK K+ + +G L+ P++ I NW++E
Sbjct: 758 ILADEMGLGKTIQTIVFLYSLYKEG------HTKG--------PFLVSAPLSTIINWERE 803
Query: 377 FKKWLPMNRIGVLT--------LHSRNSPTEDKAQV--RSFLKVPRTYQV----LIVGYE 422
F+ W P + T + ED A + K+ R QV L+ YE
Sbjct: 804 FQMWAPKFYVVTYTGDKDSRAIIRENEFSFEDNAIKGGKKAFKMKREAQVKFHVLLTSYE 863
Query: 423 KLLSIKDELQNEKRNLDLVICDEGHRLKNKDSKILKVLQSLDIEKKIVLSGTPIQNDLEE 482
L++I R LV+ DE HRLKN SK +VL I+ K++L+GTP+QN+LEE
Sbjct: 864 -LITIDQAALGSIRWACLVV-DEAHRLKNNQSKFFRVLNGYKIDHKLLLTGTPLQNNLEE 921
Query: 483 FYTIIDFINPGILGSFGRFKREYILPIARSRDVNAKQNQTLVEQGLLRSDQLIEITKRFI 542
+ +++F+ P + F E+ D++ K++Q +L ++ +
Sbjct: 922 LFHLLNFLTPERFNNLEGFLEEFA-------DIS-KEDQI---------KKLHDLLGPHM 964
Query: 543 LRRTNEILQQYLPPRTDLIIFCKPTAEQVEAFHKILTEGQLNFSNMTFNSSLGLITLF-- 600
LRR + + +P +T+LI+ + + Q + + ILT ++ + + L+ +
Sbjct: 965 LRRLKADVFKNMPAKTELIVRVELSPMQKKYYKYILTRNFEALNSRGGGNQVSLLNIMMD 1024
Query: 601 -KKICNSTRLIKTDPYYEERLSQVQXXXXXXXXXXXXLRILLSLLHELKTKTDEKVVVIS 659
KK CN L +L L +L +L +LK + +V++ S
Sbjct: 1025 LKKCCNHPYLFPVAAMESPKLPSGAYEGGALIKSSGKLMLLQKMLRKLKEQ-GHRVLIFS 1083
Query: 660 NYTQTLDIIEGHCSSEGYTSARLDGSTATKTRDQIVTSFNNDPSI-FVFLLSAKSGGVGL 718
T+ LD++E EGY R+DG R + + FN + F FLLS ++GG+G+
Sbjct: 1084 QMTKMLDLLEDFLDYEGYKYERIDGGITGALRQEAIDRFNAPGAQQFCFLLSTRAGGLGI 1143
Query: 719 NLIGASRLVLFDNDWNPSIDLQAMSRIHRDGQRRPCFIYRLVTTGCIDEKILQRQLMKIA 778
NL A +++FD+DWNP D+QA SR HR GQ IYR VT ++E+I Q K+
Sbjct: 1144 NLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRASVEERITQVAKRKMM 1203
Query: 779 LS 780
L+
Sbjct: 1204 LT 1205
>CE18196 [K] KOG0384 Chromodomain-helicase DNA-binding protein
Length = 2957
Score = 181 bits (459), Expect = 5e-45
Identities = 154/576 (26%), Positives = 261/576 (44%), Gaps = 99/576 (17%)
Query: 246 LFDPVSIKDPLIMNKTENHKVSVIVDPLLSKTLRPHQREGVKFLYDCVMNMVHTKGDESM 305
+ DP I++ E K+S +LR +Q EGV +L C N
Sbjct: 1155 VIDPAKIREKQRPEPEEWKKMSTSKVWKNGNSLREYQFEGVDWLLYCYYNA--------- 1205
Query: 306 ILERDDDIKGCLLADEMGLGKXXXXXXXXXXXXKQTPYPTIINQRGVTLAGEISKVLIVC 365
+ C+LADEMGLGK TI + G L+V
Sbjct: 1206 --------QNCILADEMGLGKTVQ---------------TITFLSRIYDYGIHGPFLVVV 1242
Query: 366 PVTLIGNWKKEFKKWLPMNRIGVLTLHSRNSPTEDKAQV---------------RSFLKV 410
P++ I NW +EF+ W MN I H E Q ++F+K+
Sbjct: 1243 PLSTIQNWVREFETWTDMNAI---VYHGSAYAREVLQQYEVFYDKRHCGAKNWKKNFVKI 1299
Query: 411 PRTYQVLIVGYEKLLSIKDELQNEKRNLDLVICDEGHRLKNKDSKIL-KVLQSLDIEKKI 469
LI +E ++S + L+ K + + DE HRLKN++ K+L L + +E ++
Sbjct: 1300 ----DALITTFETVVSDVEFLK--KIPWRVCVIDEAHRLKNRNCKLLVNGLLAFRMEHRV 1353
Query: 470 VLSGTPIQNDLEEFYTIIDFINPGILGSFGRFKREYILPIARSRDVNAKQNQTLVEQGLL 529
+L+GTP+QN+++E +++++F++P + F ++ + Q V++
Sbjct: 1354 LLTGTPLQNNIDELFSLLNFLHPQQFDNSATFLEQF----------GSCQTDDQVQK--- 1400
Query: 530 RSDQLIEITKRFILRRTNEILQQYLPPRTDLIIFCKPTAEQVEAFHKILTEGQLNFSNMT 589
L EI K +LRR E +++ L P+ + II + + Q + + IL + NFS++
Sbjct: 1401 ----LQEILKPMMLRRLKEDVEKSLGPKEETIIEVQLSDMQKKFYRAIL---ERNFSHLC 1453
Query: 590 FNSS----LGLITLFKKICNSTRLIK------------TDPYYEERLSQVQXXXXXXXXX 633
+S + ++ +K CN LI P ++E
Sbjct: 1454 KGTSAPSLMNVMMELRKCCNHPFLINGAEEAIMNDFRLAHPDWDEET----LAHKALIQA 1509
Query: 634 XXXLRILLSLLHELKTKTDEKVVVISNYTQTLDIIEGHCSSEGYTSARLDGSTATKTRDQ 693
+ ++ LL +L+ K KV++ S + LD++E S Y R+DG+ R
Sbjct: 1510 SGKVVLIEKLLPKLR-KDGHKVLIFSQMVKVLDLLEEFLISMSYPFERIDGNVRGDLRQA 1568
Query: 694 IVTSFNNDPSI-FVFLLSAKSGGVGLNLIGASRLVLFDNDWNPSIDLQAMSRIHRDGQRR 752
+ F+ + S FVFLL ++GG+G+NL A +++FD+DWNP DLQA +R HR GQ++
Sbjct: 1569 AIDRFSKENSDRFVFLLCTRAGGLGINLTAADTVIIFDSDWNPQNDLQAQARCHRIGQKK 1628
Query: 753 PCFIYRLVTTGCIDEKILQRQLMKIALSKKFLDSAT 788
+YRL+T+ + ++ + +K+ L K L S T
Sbjct: 1629 LVKVYRLITSNTYEREMFDKASLKLGLDKAVLQSTT 1664
>CE11028 [KL] KOG0387 Transcription-coupled repair protein CSB/RAD26
(contains SNF2 family DNA-dependent ATPase domain)
Length = 1785
Score = 181 bits (459), Expect = 5e-45
Identities = 140/532 (26%), Positives = 241/532 (44%), Gaps = 46/532 (8%)
Query: 293 VMNMVHTKGDESM--ILERDDDIKGCLLADEMGLGKXXXXXXXXXXXXK--QTPYPTIIN 348
V N +H E + + ++ D G +LADEMGLGK + +T Y T
Sbjct: 190 VWNKLHKFQQEGVEWLQKKTDHRSGGILADEMGLGKTIQSVVFLRSIQETARTHYKTT-- 247
Query: 349 QRGVTLAGEISKVLIVCPVTLIGNWKKEFKKWLPMNRIGVLTLHSRNSPTEDKAQVRSFL 408
+ LIVC V++I W KE +W P R+ +L H ED F
Sbjct: 248 --------GLDTALIVCHVSIIAQWIKELNQWFPKARVFLLHSHCSTGRQEDYVG-SIFR 298
Query: 409 KVPRTYQ------VLIVGYEKLLSIKDELQNEKRNLDLVICDEGHRLKNKDSKILKVLQS 462
K+ R + +++ Y +K + K +VI DEGH ++N+++K ++
Sbjct: 299 KLQRRRKEYPDGAIILTTYSLFTKLKKPIV--KHLWQVVILDEGHYIRNENTKCSIAMRK 356
Query: 463 LDIEKKIVLSGTPIQNDLEEFYTIIDFINPGILGSFGRFKREYILPIARSRDVNAKQNQT 522
L ++ +L+GTP QN L EF+ ++DF++PG L F R + I ++N
Sbjct: 357 LMTTQRFILTGTPFQNRLSEFWKLVDFVHPGRLSDSATFHRNFTHIINAGANLNCSPEAA 416
Query: 523 LVEQGLLRSDQLIEITKRFILRRTNE----ILQQYLPPRTDLIIFCKPTAEQVEAFHKIL 578
L + + K ILRR E +LQ LP + ++++ C+ + Q + +
Sbjct: 417 AKAYECLVALHIA--VKPLILRRLQEDHKEVLQ--LPEKQEIVLSCELSKRQRRLYMEYG 472
Query: 579 TEGQLN-FSNMTFNSSLGLITLFKKICNSTRLIKTDPYYEERLSQVQXXXXXXXXXXXXL 637
Q+N + +G+ L ICN + ++ + ++ +
Sbjct: 473 NSHQVNEIIERRLKAFVGINHL-TNICNHPGIYRSLSPASPKFGSIKDSGK--------V 523
Query: 638 RILLSLLHELKTKTDEKVVVISNYTQTLDIIEGHCSSEGYTSARLDGSTATKTRDQIVTS 697
+ L + +V++ + + ++E + +G L G+ + R +I+
Sbjct: 524 EMTFKLFDDWFKSPTNRVILFTQRRTVITMMEYFLAEKGIKCVSLTGADSAAARPKIIKK 583
Query: 698 FNNDPSIFVFLLSAKSGGVGLNLIGASRLVLFDNDWNPSIDLQAMSRIHRDGQRRPCFIY 757
F +D SI VFL++ ++GG+GLNL A+++++FD DWNP D QA +RI+R GQ IY
Sbjct: 584 FEDDVSIKVFLMTTRAGGLGLNLTCANKVIIFDPDWNPQADNQAKNRIYRMGQTNDVAIY 643
Query: 758 RLVTTGCIDEKILQRQLMKIALSKKFLDSATDQSKNDDDLFQQEELKDLFTI 809
RLV+ G I++ +Q+ K L+ + L +A D L DLF +
Sbjct: 644 RLVSNGTIEDLKFFKQVQKENLAARLLHNA-----EIDQFVPNNTLADLFRL 690
>Hs4557453 [R] KOG0383 Predicted helicase
Length = 1912
Score = 181 bits (458), Expect = 6e-45
Identities = 144/524 (27%), Positives = 236/524 (44%), Gaps = 73/524 (13%)
Query: 277 TLRPHQREGVKFLYDCVMNMVHTKGDESMILERDDDIKGCLLADEMGLGKXXXXXXXXXX 336
TL P+Q EG+ +L +G ++ +LADEMGLGK
Sbjct: 725 TLHPYQMEGLNWL-----RFSWAQGTDT------------ILADEMGLGKTVQTAVFLYS 767
Query: 337 XXKQTPYPTIINQRGVTLAGEISKVLIVCPVTLIGNWKKEFKKWLPMNRIGVLT------ 390
K+ + +G L+ P++ I NW++EF+ W P +
Sbjct: 768 LYKEG------HSKG--------PFLVSAPLSTIINWEREFEMWAPDMYVVTYVGDKDSR 813
Query: 391 --LHSRNSPTEDKAQVRSFLKVPRTYQVLIVGYEKLLSIKDELQNEKRNLDLV-----IC 443
+ ED A +R K R + V + LL+ + + + L + I
Sbjct: 814 AIIRENEFSFEDNA-IRGGKKASRMKKEASVKFHVLLTSYELITIDMAILGSIDWACLIV 872
Query: 444 DEGHRLKNKDSKILKVLQSLDIEKKIVLSGTPIQNDLEEFYTIIDFINPGILGSFGRFKR 503
DE HRLKN SK +VL ++ K++L+GTP+QN+LEE + +++F+ P + F
Sbjct: 873 DEAHRLKNNQSKFFRVLNGYSLQHKLLLTGTPLQNNLEELFHLLNFLTPERFHNLEGFLE 932
Query: 504 EYILPIARSRDVNAKQNQTLVEQGLLRSDQLIEITKRFILRRTNEILQQYLPPRTDLIIF 563
E+ D+ AK++Q +L ++ +LRR + + +P +T+LI+
Sbjct: 933 EFA-------DI-AKEDQI---------KKLHDMLGPHMLRRLKADVFKNMPSKTELIVR 975
Query: 564 CKPTAEQVEAFHKILTEGQLNFSNMTFN------SSLGLITLFKKICNSTRLIKTDPYYE 617
+ + Q + + ILT NF + S L ++ KK CN L
Sbjct: 976 VELSPMQKKYYKYILTR---NFEALNARGGGNQVSLLNVVMDLKKCCNHPYLFPVAAMEA 1032
Query: 618 ERLSQVQXXXXXXXXXXXXLRILLSLLHELKTKTDEKVVVISNYTQTLDIIEGHCSSEGY 677
++ L +L +L LK + +V++ S T+ LD++E EGY
Sbjct: 1033 PKMPNGMYDGSALIRASGKLLLLQKMLKNLK-EGGHRVLIFSQMTKMLDLLEDFLEHEGY 1091
Query: 678 TSARLDGSTATKTRDQIVTSFNNDPSI-FVFLLSAKSGGVGLNLIGASRLVLFDNDWNPS 736
R+DG R + + FN + F FLLS ++GG+G+NL A ++++D+DWNP
Sbjct: 1092 KYERIDGGITGNMRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNPH 1151
Query: 737 IDLQAMSRIHRDGQRRPCFIYRLVTTGCIDEKILQRQLMKIALS 780
D+QA SR HR GQ + IYR VT ++E+I Q K+ L+
Sbjct: 1152 NDIQAFSRAHRIGQNKKVMIYRFVTRASVEERITQVAKKKMMLT 1195
>SPAC20G8.08c [B] KOG0389 SNF2 family DNA-dependent ATPase
Length = 944
Score = 180 bits (457), Expect = 8e-45
Identities = 150/553 (27%), Positives = 248/553 (44%), Gaps = 85/553 (15%)
Query: 277 TLRPHQREGVKFLYDCVMNMVHTKGDESMILERDDDIKGCLLADEMGLGKXXXXXXXXXX 336
TL+ +Q G+ +L C+M G +LADEMGLGK
Sbjct: 413 TLKSYQIVGLNWL--CLMYKAKLSG---------------ILADEMGLGKTCQVISFLAS 455
Query: 337 XXKQTPYPTIINQRGVTLAGEISKVLIVCPVTLIGNWKKEFKKWLPMNRIGVLTLHSRNS 396
+ ++G+ ++ L+V P + +GNW +EF+K+ P R+ S
Sbjct: 456 ----------LKEKGIQ-----NRHLVVVPSSTLGNWLREFEKFCPSLRV------ESYS 494
Query: 397 PTEDKAQVRSFLKVPRTYQVLIVGYEKLLSIKDELQN-EKRNLDLVICDEGHRLKNKDSK 455
T+ + + + + + VL+ Y+ +D+ K+ D+ I DEGH LKN+ S+
Sbjct: 495 GTQSERINKRYYLMDTDFDVLVTTYQLASGSRDDRSFLRKQRFDISIFDEGHYLKNRMSE 554
Query: 456 ILKVLQSLDIEKKIVLSGTPIQNDLEEFYTIIDFINPGILGSFGRFKREYILPIARSRDV 515
K L ++ +++++GTP+QN+L+E +++ F+ P + + + I I + D
Sbjct: 555 RYKHLMNIPANFRLLITGTPLQNNLKELISLLAFMLPKVFDN-NMQGLDIIYKIKTTSDG 613
Query: 516 NAKQNQTLVEQGLLRSDQLIEITKRFILRRTNEILQQYLPPRTDLIIFCKPTAEQVEAFH 575
+ ++ E R + I FILRR E + LPP+ + +C Q+ +
Sbjct: 614 DIERAYLSQE----RISRAKTIMNPFILRRRKENVLSDLPPKIQHVEYCHMEETQLSLYL 669
Query: 576 KILTEGQLNFSN---------------MTFNSSLGLITLF---KKICNSTRLIKTDPYYE 617
+L L +N + F S L TL K+I + +P Y
Sbjct: 670 SVLELKNLVNANRENILMQLRKAALHQLLFRSQYNLETLSLMSKRILREDAYLDANPQYI 729
Query: 618 ERLSQVQXXXXXXXXX------------------XXXLRILLSLLHELKTKTDEKVVVIS 659
+V ++ L SLL K++ +E++++ S
Sbjct: 730 FEDMEVMSDFELHKLADQYRHLHPFALKGKPWMDSAKVKKLCSLLK--KSRPNERILIFS 787
Query: 660 NYTQTLDIIEGHCSSEGYTSARLDGSTATKTRDQIVTSFNNDPSIFVFLLSAKSGGVGLN 719
+TQ LDI+E ++ RLDGST +TR Q++ F+ + + VFLLS KSGG G+N
Sbjct: 788 QFTQVLDILEYVLNTLDLEFLRLDGSTPVETRQQLIDDFHTNENYKVFLLSTKSGGFGIN 847
Query: 720 LIGASRLVLFDNDWNPSIDLQAMSRIHRDGQRRPCFIYRLVTTGCIDEKILQRQLMKIAL 779
L A+ ++LFD +NP D+QA R HR GQ RP +YRL+T I+E I + K+ L
Sbjct: 848 LTCANIVILFDCSFNPFDDMQAEDRAHRVGQTRPVHVYRLITKNTIEENIRRLANTKLTL 907
Query: 780 SKKFLDSATDQSK 792
TD K
Sbjct: 908 ESSL---TTDSEK 917
>Hs14149730 [B] KOG0389 SNF2 family DNA-dependent ATPase
Length = 1026
Score = 179 bits (455), Expect = 1e-44
Identities = 149/552 (26%), Positives = 246/552 (43%), Gaps = 91/552 (16%)
Query: 275 SKTLRPHQREGVKFLYDCVMNMVHTKGDESMILERDDDIKGCLLADEMGLGKXXXXXXXX 334
S +L+P+Q+ G+ +L +VH G + G +LADEMGLGK
Sbjct: 494 SLSLKPYQKVGLNWLA-----LVHKHG-----------LNG-ILADEMGLGKTIQAIAFL 536
Query: 335 XXXXKQTPYPTIINQRGVTLAGEISKVLIVCPVTLIGNWKKEFKKWLPMNRIGVLTLHSR 394
++ G LIV P + I NW +E W P + VL +
Sbjct: 537 AYLYQE---------------GNNGPHLIVVPASTIDNWLREVNLWCPT--LKVLCYYGS 579
Query: 395 NSPTEDKAQVRSFLKVP-RTYQVLIVGYEKLLSIKDELQNEKR-NLDLVICDEGHRLKNK 452
E++ Q+R + Y V++ Y +S D+ +R L+ I DEGH LKN
Sbjct: 580 Q---EERKQIRFNIHSRYEDYNVIVTTYNCAISSSDDRSLFRRLKLNYAIFDEGHMLKNM 636
Query: 453 DSKILKVLQSLDIEKKIVLSGTPIQNDLEEFYTIIDFINPGILGSFGRFKREYILPIARS 512
S + L +++ +++L+GTP+QN+L E ++++F+ P + S I + S
Sbjct: 637 GSIRYQHLMTINANNRLLLTGTPVQNNLLELMSLLNFVMPHMFSS----STSEIRRMFSS 692
Query: 513 RDVNAKQNQTLVEQGLLRSDQLIEITKRFILRRTNEILQQYLPPRTDLIIFCKPTAEQVE 572
+ +A + ++ + + Q+I K FILRR E + + LPP+ D I C + +Q +
Sbjct: 693 KTKSADEQSIYEKERIAHAKQII---KPFILRRVKEEVLKQLPPKKDRIELCAMSEKQEQ 749
Query: 573 AFHKILTEGQLNFSNMTFNSSL-GLITLFKKICNSTRLIKTDPYYEERLSQVQXXXXXXX 631
+ + + + +N+ N+ + ++ +K+ N L+ Y E+L ++
Sbjct: 750 LYLGLFNRLKKSINNLEKNTEMCNVMMQLRKMANHP-LLHRQYYTAEKLKEMSQLMLKEP 808
Query: 632 XX------------------------------------------XXXLRILLSLLHELKT 649
R+L +L ELK
Sbjct: 809 THCEANPDLIFEDMEVMTDFELHVLCKQYRHINNFQLDMDLILDSGKFRVLGCILSELKQ 868
Query: 650 KTDEKVVVISNYTQTLDIIEGHCSSEGYTSARLDGSTATKTRDQIVTSFNNDPSIFVFLL 709
K D +VV+ S +T LDI+E + RLDG T R ++ FN D IFVFLL
Sbjct: 869 KGD-RVVLFSQFTMMLDILEVLLKHHQHRYLRLDGKTQISERIHLIDEFNTDMDIFVFLL 927
Query: 710 SAKSGGVGLNLIGASRLVLFDNDWNPSIDLQAMSRIHRDGQRRPCFIYRLVTTGCIDEKI 769
S K+GG+G+NL A+ ++L D D NP D QA R HR GQ + + +L++ G I+E +
Sbjct: 928 STKAGGLGINLTSANVVILHDIDCNPYNDKQAEDRCHRVGQTKEVLVIKLISQGTIEESM 987
Query: 770 LQRQLMKIALSK 781
L+ K+ L +
Sbjct: 988 LKINQQKLKLEQ 999
>SPAC3G6.01 [K] KOG0384 Chromodomain-helicase DNA-binding protein
Length = 1388
Score = 178 bits (452), Expect = 3e-44
Identities = 144/513 (28%), Positives = 239/513 (46%), Gaps = 53/513 (10%)
Query: 317 LLADEMGLGKXXXXXXXXXXXXKQTPYPTIINQRGVTLAGEISKVLIVCPVTLIGNWKKE 376
+LADEMGLGK + Q G L+V P++ + W++
Sbjct: 397 ILADEMGLGKTVQTVAFLSYLAHS------LRQHG--------PFLVVVPLSTVPAWQET 442
Query: 377 FKKWLP-MNRIGVL-TLHSRNSPTEDKAQVRSFLKVPRTYQVLIVGYEKLLSIKDELQNE 434
W MN I L SR + + V K+ + +L+ YE +L + L N
Sbjct: 443 LALWASDMNCISYLGNTTSRQVIRDYEFYVDGTQKIK--FNLLLTTYEYVLKDRSVLSNI 500
Query: 435 KRNLDLVICDEGHRLKNKDSKILKVLQSLDIEKKIVLSGTPIQNDLEEFYTIIDFINPGI 494
K + DE HRLKN +S + + L +++++GTP+QN++ E ++DF+ PG
Sbjct: 501 K--WQYMAIDEAHRLKNSESSLYEALSQFKNSNRLLITGTPLQNNIRELAALVDFLMPG- 557
Query: 495 LGSFGRFKREYILPIARSRDVNAKQNQTLVEQGLLRSDQLIEITKRFILRRTNEILQQYL 554
+F+ I ++ A + ++ +RS Q E + +ILRR + +++ L
Sbjct: 558 -----KFE------IREEINLEAPDEE---QEAYIRSLQ--EHLQPYILRRLKKDVEKSL 601
Query: 555 PPRTDLIIFCKPTAEQVEAFHKILTEGQL----NFSNMTFNSSLGLITLFKKICNSTRLI 610
P +++ I+ + + Q+ + ILT + S+ + S L ++ KK N L
Sbjct: 602 PSKSERILRVELSDLQMYWYKNILTRNYRVLTQSISSGSQISLLNIVVELKKASNHPYLF 661
Query: 611 KTDPYYEERLSQVQXXXXXXXXXXXXLR-----ILLSLLHELKTKTDEKVVVISNYTQTL 665
D E + ++ + +LL L + +V++ S + L
Sbjct: 662 --DGVEESWMQKINSQGRRDEVLKGLIMNSGKMVLLDKLLSRLRRDGHRVLIFSQMVRML 719
Query: 666 DIIEGHCSSEGYTSARLDGSTATKTRDQIVTSFN--NDPSIFVFLLSAKSGGVGLNLIGA 723
DI+ + S GY RLDG+ R + FN N P FVFLLS ++GG+G+NL+ A
Sbjct: 720 DILGDYLSLRGYPHQRLDGTVPAAVRRTSIDHFNAPNSPD-FVFLLSTRAGGLGINLMTA 778
Query: 724 SRLVLFDNDWNPSIDLQAMSRIHRDGQRRPCFIYRLVTTGCIDEKILQRQLMKIALSKKF 783
+++FD+DWNP DLQAM+R HR GQ+ +YRL++ I+E +L+R K+ L
Sbjct: 779 DTVIIFDSDWNPQADLQAMARAHRIGQKNHVMVYRLLSKDTIEEDVLERARRKMILEYAI 838
Query: 784 LD-SATDQSKND-DDLFQQEELKDLFTINLSTL 814
+ TD+ KN +D F EEL + S +
Sbjct: 839 ISLGVTDKQKNSKNDKFSAEELSAILKFGASNM 871
>CE17716 [R] KOG0383 Predicted helicase
Length = 1829
Score = 176 bits (445), Expect = 2e-43
Identities = 145/525 (27%), Positives = 234/525 (43%), Gaps = 77/525 (14%)
Query: 278 LRPHQREGVKFLYDCVMNMVHTKGDESMILERDDDIKGCLLADEMGLGKXXXXXXXXXXX 337
L P+Q EG+ +L C N G ++ +LADEMGLGK
Sbjct: 602 LHPYQLEGLNWLRHCWSN-----GTDA------------ILADEMGLGKTVQSLTFLYSL 644
Query: 338 XKQTPYPTIINQRGVTLAGEISKVLIVCPVTLIGNWKKEFKKWLP----MNRIG------ 387
K+ LI P++ I NW++E ++W P + +G
Sbjct: 645 MKEGHCK--------------GPFLIAAPLSTIINWEREAEQWCPDFYVVTYVGLRDARV 690
Query: 388 VLTLHS--------RNSPTEDKAQVRSFLKVPRTYQVLIVGYEKLLSIKDELQNEKRNLD 439
VL H R+ P K + +K + VL+ YE + K L + +
Sbjct: 691 VLREHEFSFVEGAVRSGPKASKMKTTENMK----FHVLLTSYETINMDKTILSSIEWGA- 745
Query: 440 LVICDEGHRLKNKDSKILKVLQSLDIEKKIVLSGTPIQNDLEEFYTIIDFINPGILGSFG 499
++ DE HRLKN S K L I +++L+GTP+QN+LEE + +++F++
Sbjct: 746 -LVVDEAHRLKNNQSLFFKNLNEYTIHYRVLLTGTPLQNNLEELFHLLNFLSKERFNQLE 804
Query: 500 RFKREYILPIARSRDVNAKQNQTLVEQGLLRSDQLIEITKRFILRRTNEILQQYLPPRTD 559
F E+ + +K++Q ++L + +LRR + +P +++
Sbjct: 805 AFTAEF--------NEISKEDQI---------EKLHNLLGPHMLRRLKADVLTGMPSKSE 847
Query: 560 LIIFCKPTAEQVEAFHKILTEG--QLNFSNM-TFNSSLGLITLFKKICNSTRLIKTDPYY 616
LI+ + +A Q + + ILT LN N T S + ++ KK CN L
Sbjct: 848 LIVRVELSAMQKKWYKNILTRNFDALNVKNGGTQMSLMNVLMELKKCCNHPYLFVKAELE 907
Query: 617 EERLSQVQXXXXXXXXXXXXLRILLSLLHELKTKTDEKVVVISNYTQTLDIIEGHCSSEG 676
+ +L +L +LK +V++ S T+ LDI+E C EG
Sbjct: 908 APKEKNGMYEGTALIKNSGKFVLLQKMLRKLKDG-GHRVLIFSQMTRMLDIMEDLCEYEG 966
Query: 677 YTSARLDGSTATKTRDQIVTSFNNDPSI-FVFLLSAKSGGVGLNLIGASRLVLFDNDWNP 735
Y R+DGS + R + +N + F+FLLS ++GG+G+NL A ++++D+DWNP
Sbjct: 967 YRYERIDGSIMGQMRQDAIDRYNAPGAQQFIFLLSTRAGGLGINLATADTVIIYDSDWNP 1026
Query: 736 SIDLQAMSRIHRDGQRRPCFIYRLVTTGCIDEKILQRQLMKIALS 780
D+QA SR HR GQ+ IYR VT ++EKI K+ L+
Sbjct: 1027 HNDIQAFSRAHRLGQKHKVMIYRFVTKKSVEEKITSVAKKKMLLN 1071
>7293795 [R] KOG0383 Predicted helicase
Length = 883
Score = 175 bits (443), Expect = 3e-43
Identities = 137/514 (26%), Positives = 245/514 (47%), Gaps = 56/514 (10%)
Query: 317 LLADEMGLGKXXXXXXXXXXXXKQTPYPTIINQRGVTLAGEISKVLIVCPVTLIGNWKKE 376
+LADEMGLGK K+ + RG LI P++ + NW++E
Sbjct: 289 ILADEMGLGKTIQTVVFLYSLFKEG------HCRG--------PFLISVPLSTLTNWERE 334
Query: 377 FKKWLP----MNRIGVLTLHS---RNSPTEDKAQVRSFLKVPRTYQ--VLIVGYEKLLSI 427
+ W P + +G T + ++ + ++ ++ + Y+ V++ YE +S+
Sbjct: 335 LELWAPELYCVTYVGGKTARAVIRKHEISFEEVTTKTMRENQTQYKFNVMLTSYE-FISV 393
Query: 428 KDELQNEKRNLDLVICDEGHRLKNKDSKILKVLQSLDIEKKIVLSGTPIQNDLEEFYTII 487
D + ++ DE HRL++ SK ++L I K++L+GTP+QN+LEE + ++
Sbjct: 394 -DAAFLGCIDWAALVVDEAHRLRSNQSKFFRILSKYRIGYKLLLTGTPLQNNLEELFHLL 452
Query: 488 DFINPGILGSFGRFKREYILPIARSRDVNAKQNQTLVEQGLLRSDQLIEITKRFILRRTN 547
+F++ G F+ E+ DV+ ++ + +L EI + +LRR
Sbjct: 453 NFLSSGKFNDLQTFQAEF-------TDVSKEE----------QVKRLHEILEPHMLRRLK 495
Query: 548 EILQQYLPPRTDLIIFCKPTAEQVEAFHKILTEGQLNFSNMTFN------SSLGLITLFK 601
+ + +PP+++ I+ + ++ Q + + ILT+ NF + S L ++ +
Sbjct: 496 ADVLKSMPPKSEFIVRVELSSMQKKFYKHILTK---NFKALNQKGGGRVCSLLNIMMDLR 552
Query: 602 KICNSTRLIKTDPYYEERLSQVQXXXXXXXXXXXXLRILLSLLHELKTKTDEKVVVISNY 661
K CN L + L +L +L +LK + +V++ S
Sbjct: 553 KCCNHPYLFPSAAEEATISPSGLYEMSSLTKASGKLDLLSKMLKQLKA-DNHRVLLFSQM 611
Query: 662 TQTLDIIEGHCSSEGYTSARLDGSTATKTRDQIVTSFNNDPS-IFVFLLSAKSGGVGLNL 720
T+ L+++E EGY R+DGS R + + FN+ S FVFLLS ++GG+G+NL
Sbjct: 612 TKMLNVLEHFLEGEGYQYDRIDGSIKGDLRQKAIDRFNDPVSEHFVFLLSTRAGGLGINL 671
Query: 721 IGASRLVLFDNDWNPSIDLQAMSRIHRDGQRRPCFIYRLVTTGCIDEKILQRQLMKIALS 780
A +++FD+DWNP D+QA SR HR GQ++ IYR VT ++E+I+Q K+ L+
Sbjct: 672 ATADTVIIFDSDWNPHNDVQAFSRAHRMGQKKKVMIYRFVTHNSVEERIMQVAKHKMMLT 731
Query: 781 KKFLDSATDQSKNDDDLFQQEELKDLFTINLSTL 814
+ + F ++EL+D+ L
Sbjct: 732 HLVVRPGMGGMTTN---FSKDELEDILRFGTEDL 762
>SPBP35G2.10 [R] KOG0383 Predicted helicase
Length = 1418
Score = 174 bits (442), Expect = 4e-43
Identities = 144/536 (26%), Positives = 241/536 (44%), Gaps = 72/536 (13%)
Query: 277 TLRPHQREGVKFLYDCVMNMVHTKGDESMILERDDDIKGCLLADEMGLGKXXXXXXXXXX 336
TL P+Q +G+ +LY + H C+LADEMGLGK
Sbjct: 555 TLMPYQLKGLNWLY--LRWYTHHP---------------CILADEMGLGK---------- 587
Query: 337 XXKQTPYPTIINQRGVTLAGEISKVLIVCPVTLIGNWKKEFKKWLPMNRIGVLTLHSRN- 395
+ + +++ R + VL++ P + NW++E KKW P +I VL +N
Sbjct: 588 TVQVISFISVLFYR-----HKCFPVLVIVPHATVANWERELKKWAPFLQINVLVGSEKNR 642
Query: 396 SPTEDKAQVRSFLKVPRTYQVLIV---GYEKLLSIKDELQNEKRNLDLVICDEGHRLKNK 452
S D + + VL++ E+ +S+ + Q ++I DEG RLKN
Sbjct: 643 SLVRDYRLINQKDPKHVSTHVLVISASNVEREISLLRKFQ-----WKVLIVDEGQRLKND 697
Query: 453 DSKILKVLQSLDIEKKIVLSGTPIQNDLEEFYTIIDFINPGILGSFGRFKREYILPIARS 512
S + L S+ + K++L+GTP+QN++ E + ++ F+NP + + KR I+ +
Sbjct: 698 QSSLFYYLSSVKSDFKLLLTGTPLQNNVRELFNLLQFLNPMKINAAELEKRYSIIDTEKV 757
Query: 513 RDVNAKQNQTLVEQGLLRSDQLIEITKRFILRRTNEILQQYLPPRTDLIIFCKPTAEQVE 572
+++ +I K F LRR + P + ++II T Q
Sbjct: 758 TELH-------------------QILKPFFLRRVKSEVLDNFPTKVEVIIPLSMTPVQKG 798
Query: 573 AFHKILTEGQLNFSNMT---FNSSLG--LITLFKKICNSTRLIKTDPY-----YEERLSQ 622
+ IL++ N+T SS G T I R PY E+R
Sbjct: 799 LYKSILSKNLSLLRNITGYANTSSSGGQRTTSLNNILMQLRKTLAHPYIYSPDIEDRNLP 858
Query: 623 VQXXXXXXXXXXXXLRILLSLLHELKTKTDEKVVVISNYTQTLDIIEGHCSSEGYTSARL 682
+ IL L+ +L T+ ++++ S + Q LDI+E + AR
Sbjct: 859 YELAMRSLEEASCKFLILRLLVPKLITR-GHRILLFSQFIQQLDILEDWFEYKNIAYARF 917
Query: 683 DGSTATKTRDQIVTSFNNDPS-IFVFLLSAKSGGVGLNLIGASRLVLFDNDWNPSIDLQA 741
DG+++ R + SFN S + FLLS ++GGVG+NL A +++ D D+NP D+QA
Sbjct: 918 DGASSEMERQSAIDSFNAPNSELSCFLLSTRAGGVGINLASADTVIILDPDFNPHQDMQA 977
Query: 742 MSRIHRDGQRRPCFIYRLVTTGCIDEKILQRQLMKIALSKKFLDSATDQSKNDDDL 797
++R HR GQ++ ++ L T ++EKI+Q K+ L ++S ++ DL
Sbjct: 978 IARAHRYGQKKKVLVFVLTTRDSVEEKIIQNAQKKLVLDHLIVESLDQNHNSEKDL 1033
>7297570 [B] KOG0389 SNF2 family DNA-dependent ATPase
Length = 844
Score = 170 bits (431), Expect = 8e-42
Identities = 144/511 (28%), Positives = 236/511 (46%), Gaps = 70/511 (13%)
Query: 317 LLADEMGLGKXXXXXXXXXXXXKQTPYPTIINQRGVTLAGEISKVLIVCPVTLIGNWKKE 376
+LADEMGLGK + + + G++ A LIV P + + NW+ E
Sbjct: 311 ILADEMGLGKTIQVIA----------FLAYLKENGLSQAAH----LIVVPSSTLDNWEAE 356
Query: 377 FKKWLPMNRIGVLTLHSRNSPTEDKAQVRS-FLKVPRT-YQVLIVGYEKLLSIKDELQNE 434
+W P L + + +++ ++R F K T + VL+ Y + S +E +
Sbjct: 357 ISRWCPE-----LVVEKYHGSQDERRRMRGRFAKDGFTGFDVLLTTYHIVGSTPEERKMF 411
Query: 435 KR-NLDLVICDEGHRLKNKDSKILKVLQSLDIEKKIVLSGTPIQNDLEEFYTIIDFINPG 493
+ LD VI DE H LKN ++ L +++ +I+L+GTP+QN+L E +++ F+ P
Sbjct: 412 RVCKLDYVIFDEAHMLKNMTTQRYANLITINARMRILLTGTPLQNNLLELISLLCFVMPK 471
Query: 494 ILGSFGRFKREYILPIARSRDVNAKQNQTLVEQGLLRSDQLIEITKRFILRRTNEILQQY 553
+ +S D + + E + R+ +++ K F+LRR + + +
Sbjct: 472 FFAKSIEDIKSLFAKKGKS-DGDQDEVSQFQETQIQRAKRIM---KPFVLRRLKKDVLKN 527
Query: 554 LPPRTDLIIFCKPTAEQVEAFHKILTEGQLNFSNMTFNSSLGLITLF------------- 600
LP + L+ +++Q +H+++ N + +S I +
Sbjct: 528 LPKKLSLVEKVPMSSQQKIYYHELVDYYSNNKGEVCSSSERAGIAIMMEMRRIANHPLLM 587
Query: 601 -------------KKICNSTRLIKTDPYY--EER--LSQVQXXXXXXXXXXXXLRI---- 639
K++ N++ KT+ Y EE +S Q ++I
Sbjct: 588 RHYFTDANLRGFSKRLANASSFKKTNEQYIFEELAVMSDFQVYQMMNKHEFYDVKIPDNL 647
Query: 640 ---------LLSLLHELKTKTDEKVVVISNYTQTLDIIEGHCSSEGYTSARLDGSTATKT 690
L +LL +LK + +V++ S +T LDI+E + + RLDG+TA
Sbjct: 648 ICDSGKFLYLDTLLPKLKAE-GHRVLLFSQFTMMLDIVEEYLRIRKFGFCRLDGATAVNV 706
Query: 691 RDQIVTSFNNDPSIFVFLLSAKSGGVGLNLIGASRLVLFDNDWNPSIDLQAMSRIHRDGQ 750
R ++T FN D SIFVFLLS K+GGVG+NL A V+ D D+NP D QA R HR GQ
Sbjct: 707 RQDLITDFNGDDSIFVFLLSTKAGGVGINLTAADTCVIHDIDFNPYNDKQAEDRCHRMGQ 766
Query: 751 RRPCFIYRLVTTGCIDEKILQRQLMKIALSK 781
+RP IYRL++ I+E IL K+ L K
Sbjct: 767 QRPVTIYRLISESTIEEGILMAAEEKLKLEK 797
>CE16277 [B] KOG0389 SNF2 family DNA-dependent ATPase
Length = 1038
Score = 170 bits (430), Expect = 1e-41
Identities = 145/544 (26%), Positives = 247/544 (44%), Gaps = 73/544 (13%)
Query: 292 CVMNMVHTKGDESMILERDDDIKGCLLADEMGLGKXXXXXXXXXXXXKQTPYPTIINQRG 351
C ++ G + +I+ + D+ +L DEMGLGK + + + Q G
Sbjct: 392 CTLHDYQLIGVKWLIMMYNKDLNA-ILGDEMGLGKTIQIVA----------FLSYLKQIG 440
Query: 352 VTLAGEISKVLIVCPVTLIGNWKKEFKKWLPMNRIGVLTLHSRNSPTEDKAQVRSFLKVP 411
T LIV P + I NW EF KW P I +LT + +++ +R +K
Sbjct: 441 KT-----GPHLIVVPSSTIENWIGEFHKWCPS--IQLLTYYGSQ---DERKHLRHRVKKQ 490
Query: 412 RTY-QVLIVGYEKLLSIKDELQNEKR-NLDLVICDEGHRLKNKDSKILKVLQSLDIEKKI 469
+ + V++ Y + S D+ + K +L+ VI DEGH LKN DS+ + L + +KKI
Sbjct: 491 KDHIDVILTTYNMVTSKSDDKKFFKNFSLNYVIYDEGHMLKNCDSERYRGLMKVKGKKKI 550
Query: 470 VLSGTPIQNDLEEFYTIIDFINPGILGSFGRFKREYILPIARSRDVNAKQNQTLVEQGLL 529
+L+GTP+QN+L E +++ F+ + + + + +N+ L +Q
Sbjct: 551 LLTGTPLQNNLIELISLMYFVLSKVFNKYCEDITHLLQHFKQLGPALDTKNKALYQQD-- 608
Query: 530 RSDQLIEITKRFILRRTNEILQQYLPPRTDLIIFCKPTAEQVEAFHKILTEGQLNFSNMT 589
R ++ I + +ILRR + LP +++ II + Q + + I+ Q + +
Sbjct: 609 RIEEAKAILQPYILRRLKNQVLGSLPSKSEQIIEVEMKKPQKQLYDNIVEALQQSEES-- 666
Query: 590 FNSSLGLITLFKKICNSTRLIKTDPYYEERLSQV-------------------------- 623
S G + ++ N L++ Y +++L ++
Sbjct: 667 -GDSYGSLMRLRQAANHP-LLRRSEYTDQKLDKIAKMLCLREKAYADKKWQHVSEDLAWL 724
Query: 624 ------QXXXXXXXXXXXXLRILLSL-----------LHELKTKTDEKVVVISNYTQTLD 666
Q L L+L L E++ K D KV++ S +T LD
Sbjct: 725 SDIKIHQLCERFRCTSKFLLNEQLALKSGKCEQLDVMLPEIQKKGD-KVLIFSQFTSMLD 783
Query: 667 IIEGHCSSEGYTSARLDGSTATKTRDQIVTSFNNDPSIFVFLLSAKSGGVGLNLIGASRL 726
I+E + + GY+ RLDG T R +++ FN +FVFLLS ++GG+G+NL A+ +
Sbjct: 784 ILEVYLNIRGYSYKRLDGQTPVLDRQEMINEFNLSKDLFVFLLSTRAGGLGINLTSANHI 843
Query: 727 VLFDNDWNPSIDLQAMSRIHRDGQRRPCFIYRLVTTGCIDEKILQRQLMKIALSKKFLDS 786
++ D D+NP D QA R HR GQ +P + RLV+ G ++ +L K+ L K+ D
Sbjct: 844 IIHDIDFNPYNDKQAEDRCHRMGQEKPVHVTRLVSKGTVEVGMLALAKKKLQLEKQVTDG 903
Query: 787 ATDQ 790
Q
Sbjct: 904 VKGQ 907
>At5g63950 [KL] KOG0387 Transcription-coupled repair protein CSB/RAD26
(contains SNF2 family DNA-dependent ATPase domain)
Length = 1053
Score = 167 bits (424), Expect = 5e-41
Identities = 149/557 (26%), Positives = 251/557 (44%), Gaps = 87/557 (15%)
Query: 274 LSKTLRPHQREGVKFLYDCVMNMVHTKGDESMILERDDDIKGCLLADEMGLGKXXXXXXX 333
++ L PHQREG+ +L+ +HT+G KG +L D+MGLGK
Sbjct: 373 IATMLYPHQREGLNWLWS-----LHTQG------------KGGILGDDMGLGKTMQICSF 415
Query: 334 XXXXXKQTPYPTIINQRGVTLAGEISKVLIVCPVTLIGNWKKEFKKWLPMNRIGVLTLHS 393
G+ + I + L+V P TL+ +W KE + +G+ +
Sbjct: 416 LA---------------GLFHSKLIKRALVVAPKTLLPHWMKE------LATVGLSQMTR 454
Query: 394 RNSPTEDKAQVRSFLKVPRTYQVLIVGYEKLLS----------IKDELQNEKRNLDLVIC 443
T KA+ + + +L+ Y+ + + DE + D +I
Sbjct: 455 EYYGTSTKAREYDLHHILQGKGILLTTYDIVRNNTKALQGDDHYTDEDDEDGNKWDYMIL 514
Query: 444 DEGHRLKNKDSKILKVLQSLDIEKKIVLSGTPIQNDLEEFYTIIDFINPGILGSFGRFKR 503
DEGH +KN +++ K L + +I++SGTPIQN+L+ SF RFK+
Sbjct: 515 DEGHLIKNPNTQRAKSLLEIPSSHRIIISGTPIQNNLKAL-------------SFNRFKQ 561
Query: 504 EYILPIARSRDVNAKQNQTLVEQGLLRSDQLIEITKRFILRRTNEIL------QQYLPPR 557
Y I R D NA + + G + L E + F LRR + L +
Sbjct: 562 NYEHYILRGTDKNATDREQRI--GSTVAKNLREHIQPFFLRRLKSEVFGDDGATSKLSKK 619
Query: 558 TDLIIFCKPTAEQVEAFHKILTEGQLNFSNMTFNSSLGLITLFKKICNSTRLIKTDPYYE 617
+++++ + TA Q + + L ++ S S L +T+ KKIC+ L+ T E
Sbjct: 620 DEIVVWLRLTACQRQLYEAFLNS-EIVLSAFD-GSPLAALTILKKICDHPLLL-TKRAAE 676
Query: 618 ERLSQVQXXXXXXXXXXXXLRILLSLLH-----ELKTKTDEKVVVISNYTQTLDIIEGHC 672
+ L + R+ + + + +TK D +S LD +
Sbjct: 677 DVLEGMDSTLTQEEAGVAE-RLAMHIADNVDTDDFQTKNDSISCKLSFIMSLLDSL---- 731
Query: 673 SSEGYTSARLDGSTATKTRDQIVTSFNNDPSIFVFLLSAKSGGVGLNLIGASRLVLFDND 732
+S GY+ R+DG+T R + V F +FLL+++ GG+GL L A R+++ D
Sbjct: 732 TSNGYSFLRIDGTTKAPDRLKTVEEFQEGHVAPIFLLTSQVGGLGLTLTKADRVIVVDPA 791
Query: 733 WNPSIDLQAMSRIHRDGQRRPCFIYRLVTTGCIDEKILQRQLMKIALSKKFLDSATDQSK 792
WNPS D Q++ R +R GQ + +YRL+T+ ++EKI ++Q+ K L K +AT+ K
Sbjct: 792 WNPSTDNQSVDRAYRIGQTKDVIVYRLMTSATVEEKIYRKQVYKGGLFK----TATEH-K 846
Query: 793 NDDDLFQQEELKDLFTI 809
F Q++L++LF++
Sbjct: 847 EQIRYFSQQDLRELFSL 863
>ECU03g1530 [K] KOG0392 SNF2 family DNA-dependent ATPase domain-containing
protein
Length = 1256
Score = 161 bits (408), Expect = 4e-39
Identities = 138/548 (25%), Positives = 242/548 (43%), Gaps = 98/548 (17%)
Query: 274 LSKTLRPHQREGVK---FLYDCVMNMVHTKGDESMILERDDDIKGCLLADEMGLGKXXXX 330
+S LR +Q EGVK FLY +N + LAD+MGLGK
Sbjct: 793 ISVKLRDYQMEGVKWLNFLYSFSLNGI--------------------LADDMGLGKTLQV 832
Query: 331 XXXXXXXXKQTPYPTIINQRGVTLAGEISKVLIVCPVTLIGNWKKEFKKWLPMNRIGVLT 390
+T KVL++CP +L G+WK E KK+ P +
Sbjct: 833 LTFLCSEIYKTN----------------RKVLVICPSSLTGHWKSEVKKFFPFVAAEIYK 876
Query: 391 LHSRNSPTEDKAQVRSFLKVPRTYQVLIVGYEKLLSIKDELQNEKRNLDLVICDEGHRLK 450
R+ TY +LI YE + D L +++ V+ DEGH L+
Sbjct: 877 REDRD-----------------TYSILISSYETFRN--DYLNFIEKDWFYVVVDEGHVLR 917
Query: 451 NKDSKILKVLQSLDIEKKIVLSGTPIQNDLEEFYTIIDFINPGILGSFGRFKREYILPIA 510
NK + + + + +K+VL+GTP+ N +E+ ++ +F+ P +G ++EY
Sbjct: 918 NKQTILYSRMNMIRCSRKMVLTGTPVHNSVEDLISLFNFLMPNYIGP----EKEY----- 968
Query: 511 RSRDVNAKQNQTLVEQGLLRSDQLIEITKRFILRRTNEILQQYLPPR--TDLIIFCKPTA 568
+N K + + +E+ R D L FILRR + + LPP+ D+ + P
Sbjct: 969 --GSLNVKMSDSEIEKTHKRLDLLHRKVLPFILRRLKIDVLKDLPPKIIRDITVELGPVQ 1026
Query: 569 EQV------EAFHKILTEGQLNFSNMTFNSSLGLITLFKKICNSTRLIKTDPYYEERLSQ 622
E++ + + L + +L + + ++G FK+ + + ++++
Sbjct: 1027 EKLYREIDEKGGKESLGDAELEYGKVD-QKNVG----FKRTRDLFLAVSHIGHFKD---- 1077
Query: 623 VQXXXXXXXXXXXXLRILLSLLHELKTKTDEKVVVISNYTQTLD-IIEGHCSSEGYTSAR 681
L ++SL K+++ + T+D +I+ + +R
Sbjct: 1078 ----STEVSCKVKALEDIISLCG--GEDLGSKILIFFQFKSTIDLVIKDIMKKYKFKYSR 1131
Query: 682 LDGSTATKTRDQIVTSFNNDPSIFVFLLSAKSGGVGLNLIGASRLVLFDNDWNPSIDLQA 741
LDGS + R +I FN + +F L+ + GG+GLNL GA +V++++DWNP DLQA
Sbjct: 1132 LDGSVPSAARTKIAEEFNTGTTQMLF-LTTQVGGLGLNLTGADTVVMYEHDWNPFNDLQA 1190
Query: 742 MSRIHRDGQRRPCFIYRLVTTGCIDEKILQRQLMKIALSKKFLDSATDQSKNDDDLFQQE 801
M R HR GQ+R ++R + ++EK++ Q K+ ++ +S Q D + +
Sbjct: 1191 MDRAHRIGQKRTVNVFRFIARNTLEEKVMNLQSFKMFVA----NSLVSQQNADIETMDTK 1246
Query: 802 ELKDLFTI 809
+L + F +
Sbjct: 1247 DLLERFQV 1254
>CE15856 [K] KOG0392 SNF2 family DNA-dependent ATPase domain-containing
protein
Length = 1529
Score = 157 bits (396), Expect = 9e-38
Identities = 154/636 (24%), Positives = 284/636 (44%), Gaps = 77/636 (12%)
Query: 205 KHLNGEPKV--PPAQKQLVDQ-PTVKSALPPLSQELIGQITY-SPLFDPVSIKDPLIMNK 260
++LNG + P L DQ TV+ A + LI IT +P F + L+ K
Sbjct: 890 RYLNGWATLLAPVIFPLLADQCETVRDAAGEAFRRLIPVITLENPDFSIEGMSQELLAKK 949
Query: 261 TE-NHKVSVIVDPL-LSKTLRPHQREGVKFLYDCVMNMVHTKGDESMILERDDDIKGCLL 318
+E ++ ++V+ P L + +R R G ++ +G + R + G +L
Sbjct: 950 SEYSNFINVLGSPSSLPRVIRADIRGGFD---TSMLREYQLEGITWIRFLRTYGLHG-IL 1005
Query: 319 ADEMGLGKXXXXXXXXXXXXKQTPYPTIINQRGVTLAGEISKVLIVCPVTLIGNWKKEFK 378
AD+MGLGK QT ++ ++ LIVCP TL+ +W E+
Sbjct: 1006 ADDMGLGKTL-----------QTMCSIALSVDRDEMSEFHRCSLIVCPRTLVDHWCLEWN 1054
Query: 379 KWLPMNRIGVLTLHSRNSPTEDKAQVRSFLKVPRTY--QVLIVGYEKLLS--IKDELQNE 434
++ P +V + + R + ++ ++ Y++L + + D + N
Sbjct: 1055 RFFPQ-------------------RVPASKNLTRCHGAEICVIAYDELKTAYMMDRVWN- 1094
Query: 435 KRNLDLVICDEGHRLKNKDSKILKVLQSLDIEKKIVLSGTPIQNDLEEFYTIIDFINPGI 494
++ DEGH ++N + K L + +++LSGTP+QN + +++ ++ PG
Sbjct: 1095 -----YIVLDEGHVMRNSKLRAWKFASQLVGKSRLILSGTPVQNSPADLWSLFAWLMPGY 1149
Query: 495 LGSFGRFKREYILPIARSRDVNAKQNQTLVEQGLLRSDQLIEITKRFILRRTNEILQQYL 554
LGS +F+ +++ I + R K N+ ++ G QL ++ F++RR + + L
Sbjct: 1150 LGSEKQFRSQFLKKIMKCR--LPKANEADLKAGSAAISQLHKLVLPFVMRRLKTEVLKEL 1207
Query: 555 PPRTDLIIFCKPTAEQVEAFHKILTEGQLNFSNMTFNSSLGLITLFKKICNSTRLIKTD- 613
P + C+ T +Q E + ++ + ++ +S + LITL +K+ + T+L+
Sbjct: 1208 PEKNVQDYECELTEDQKEIYRFVVDRCTSSQEDVGLSSLVTLITL-RKLTDHTKLVHDTL 1266
Query: 614 -----PYY--EERLSQVQXXXXXXXXXXXXLRILLSLLHELKTKTD--------EKVVVI 658
P Y + L+ I + E++ D + ++
Sbjct: 1267 AKIGAPQYILSKALAAKSGKMEALKQLLIECEICKNPDEEVEQPEDLGGLVASGHRALIF 1326
Query: 659 SNYTQTLDIIEGHCSSEGYTSAR----LDGSTATKTRDQIVTSFNNDPSIFVFLLSAKSG 714
+ + ++ S + S LDGS R ++V FN D +I V +L+ G
Sbjct: 1327 CQWKTSAKLVSDALKSGEFGSVVSHLVLDGSVPAGDRMKMVNRFNEDKTIDVLILTTHVG 1386
Query: 715 GVGLNLIGASRLVLFDNDWNPSIDLQAMSRIHRDGQRRPCFIYRLVTTGCIDEKILQRQL 774
GVGLNL GA ++ D+DWNP DLQA+ R HR GQ R +YRL+T G ++EK++
Sbjct: 1387 GVGLNLTGADTVIFLDHDWNPMKDLQAIDRAHRLGQTRNVNVYRLITQGTVEEKVMSLAK 1446
Query: 775 MKIALSKKFLDSATDQSKNDDDLFQQEELKDLFTIN 810
K+ ++ + + + EL ++FT++
Sbjct: 1447 FKLNTAQALIGADNTSMMT----METGELMNMFTLD 1478
>At2g44980 [K] KOG0385 Chromatin remodeling complex WSTF-ISWI small subunit
Length = 861
Score = 153 bits (386), Expect = 1e-36
Identities = 145/553 (26%), Positives = 238/553 (42%), Gaps = 94/553 (16%)
Query: 274 LSKTLRPHQREGVKFLYDCVMNMVHTKGDESMILERDDDIKGCLLADEMGLGKXXXXXXX 333
++ TL+PHQ EGV +L + V+ ++LE D+MGLGK
Sbjct: 47 VTATLKPHQVEGVSWLIQKYLLGVN------VVLE----------LDQMGLGKTLQAISF 90
Query: 334 XXXXXKQTPYPTIINQRGVTLAGEISKVLIVCPVTLIGNWKKEFKKWLP----MNRIG-- 387
+ P L++CP+++ W E ++ P + +G
Sbjct: 91 LSYLKFRQGLP--------------GPFLVLCPLSVTDGWVSEINRFTPNLEVLRYVGDK 136
Query: 388 VLTLHSRNSPTEDKAQVRSFLKVPRTYQVLIVGYEKLLSIKDELQNEKRNLDLVICDEGH 447
L R S D F + TY + +V + L I + I DE
Sbjct: 137 YCRLDMRKS-MYDHGHFLPFDVLLTTYDIALVDQDFLSQIPWQY---------AIIDEAQ 186
Query: 448 RLKNKDSKILKVL-QSLDIEKKIVLSGTPIQNDLEEFYTIIDFINPGILGSFGRFKREYI 506
RLKN +S + VL + I ++++++GTPIQN+L E + ++ F P + G+ +F +
Sbjct: 187 RLKNPNSVLYNVLLEQFLIPRRLLITGTPIQNNLTELWALMHFCMPLVFGTLDQFLSAF- 245
Query: 507 LPIARSRDV-NAKQNQTLVEQGLLRSDQLIEITKRFILRRTNEILQQ----YLPPRTDLI 561
DV N K+ L I F+LRRT +L + LPP T+L
Sbjct: 246 KETGDGLDVSNDKETYK----------SLKFILGAFMLRRTKSLLIESGNLVLPPLTELT 295
Query: 562 IFCKPTAEQVEAFHKILTEG-----QLNFSNMTFNSSLGLITLFKKICNSTRL---IKTD 613
+ + Q + + IL + +L+ S ++ +K C+ L I+ +
Sbjct: 296 VMVPLVSLQKKIYTSILRKELPGLLELSSGGSNHTSLQNIVIQLRKACSHPYLFPGIEPE 355
Query: 614 PYYE-ERLSQVQXXXXXXXXXXXXLRILLSLLHELKTKTDEKVVVISNYTQTLDIIEGHC 672
P+ E E L Q L LL LH+ + +V++ S T TLDI++
Sbjct: 356 PFEEGEHLVQASGKLLV-------LDQLLKRLHD----SGHRVLLFSQMTSTLDILQDFM 404
Query: 673 SSEGYTSARLDGSTATKTRDQIVTSFN-----------NDPSIFVFLLSAKSGGVGLNLI 721
Y+ RLDGS + R + +F+ + + FVF++S ++GGVGLNL+
Sbjct: 405 ELRRYSYERLDGSVRAEERFAAIKNFSAKTERGLDSEVDGSNAFVFMISTRAGGVGLNLV 464
Query: 722 GASRLVLFDNDWNPSIDLQAMSRIHRDGQRRPCFIYRLVTTGCIDEKILQRQLMKIALSK 781
A ++ ++ DWNP +D QA+ R HR GQ LVT ++E IL+R K+ LS
Sbjct: 465 AADTVIFYEQDWNPQVDKQALQRAHRIGQISHVLSINLVTEHSVEEVILRRAERKLQLSH 524
Query: 782 KFLDSATDQSKND 794
+ ++ + D
Sbjct: 525 NVVGDNMEEKEED 537
>At2g46020 [BK] KOG0386 Chromatin remodeling complex SWI/SNF component SWI2
and related ATPases (DNA/RNA helicase superfamily)
Length = 1245
Score = 147 bits (372), Expect = 6e-35
Identities = 123/495 (24%), Positives = 227/495 (45%), Gaps = 51/495 (10%)
Query: 317 LLADEMGLGKXXXXXXXXXXXXKQTPYPTIINQRGVTLAGEISKVLIVCPVTLIGNWKKE 376
+LADEMGLGK + G LI+ P ++ NWK E
Sbjct: 56 ILADEMGLGKTVQVMALIAYLME--------------FKGNYGPHLIIVPNAVLVNWKSE 101
Query: 377 FKKWLPMNRIGVLTLHSRNSPTEDKAQVRSFLKVPRTYQVLIVGYEKLLSIKDELQNEKR 436
WLP V ++ + + ++++ S +K + + VL+ YE ++ + +L K
Sbjct: 102 LHTWLP----SVSCIYYVGTK-DQRSKLFSQVKFEK-FNVLVTTYEFIMYDRSKLS--KV 153
Query: 437 NLDLVICDEGHRLKNKDSKILKVLQSLDIEKKIVLSGTPIQNDLEEFYTIIDFINPGILG 496
+ +I DE R+K+++S + + L +++++L+GTP+QNDL+E +++++ + P +
Sbjct: 154 DWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPDVFD 213
Query: 497 SFGRFKREYILPIARSRDV-NAKQNQTLVEQGLLRSDQLIEITKRFILRRTNEILQQYLP 555
+ F + P + N + + E+ ++ +L +I + F+LRR E ++ LP
Sbjct: 214 NRKAFHDWFAQPFQKEGPAHNIEDDWLETEKKVIVIHRLHQILEPFMLRRRVEDVEGSLP 273
Query: 556 PRTDLIIFCKPTAEQVEAFHKILTEGQLN---------------FSNMTFNSSLGLITLF 600
+ +++ C+ +A Q + I G L + + +
Sbjct: 274 AKVSVVLRCRMSAIQSAVYDWIKATGTLRVDPDDEKLRAQKNPIYQAKIYRTLNNRCMEL 333
Query: 601 KKICNSTRLIKTDPYYEERLSQVQXXXXXXXXXXXXLRILLSLLHELKTKTDEKVVVISN 660
+K CN L PY+ + L IL +L +L+ +T +V++ S
Sbjct: 334 RKACNHPLL--NYPYFND------FSKDFLVRSCGKLWILDRILIKLQ-RTGHRVLLFST 384
Query: 661 YTQTLDIIEGHCSSEGYTSARLDGSTATKTRDQIVTSFNN-DPSIFVFLLSAKSGGVGLN 719
T+ LDI+E + R+DG+T+ + R+ + FN+ D F+FLLS ++ G GLN
Sbjct: 385 MTKLLDILEEYLQWRRLVYRRIDGTTSLEDRESAIVDFNDPDTDCFIFLLSIRAAGRGLN 444
Query: 720 LIGASRLVLFDNDWNPSIDLQAMSRIHRDGQRRPCFIYRLVTTGCIDEKILQRQLMKIAL 779
L A +V++D D NP + QA++R HR GQ R +++ + EK+ Q
Sbjct: 445 LQTADTVVIYDPDPNPKNEEQAVARAHRIGQTRE---VKVIYMEAVVEKLSSHQKEDELR 501
Query: 780 SKKFLDSATDQSKND 794
S +D D + D
Sbjct: 502 SGGSVDLEDDMAGKD 516
>At1g05480 [L] KOG0390 DNA repair protein SNF2 family
Length = 588
Score = 146 bits (368), Expect = 2e-34
Identities = 145/602 (24%), Positives = 247/602 (40%), Gaps = 84/602 (13%)
Query: 280 PHQREGVKFLYDCVMNMVHTKGDESMILERDDDIKGCLLADEMGLGKXXXXXXXXXXXXK 339
PHQ+EG +F++ + + +E E D+ GC+++ G GK
Sbjct: 3 PHQQEGFEFIWKNLAGTIML--NELKDFENSDETGGCIMSHAPGTGKTRL---------- 50
Query: 340 QTPYPTIINQRGVTLAGEISKVLIVCPVTLIGNWKKEFKKW---LPMNRIGVLT------ 390
TII + K +I+ P +L+ W +EFKKW +P + + L
Sbjct: 51 -----TIIFLQAYLQCFPDCKPVIIAPASLLLTWAEEFKKWNISIPFHNLSSLDFTGKEN 105
Query: 391 ------LHSRNSPTEDKAQVR-----SFLKVPRTYQVLIVGYEKLLSIKDELQNEK---- 435
L +N+ ++R S++K + YEKL +KDE + K
Sbjct: 106 SAALGLLMQKNATARSNNEIRMVKIYSWIKSKSILGISYNLYEKLAGVKDEDKKTKMVRE 165
Query: 436 ----RNLD-----------LVICDEGHRLKNKDSKILKVLQSLDIEKKIVLSGTPIQNDL 480
+ LD L++ DE H +N+ S I K L ++ +K+I+LSGTP QN+
Sbjct: 166 VKPDKELDDIREILMGRPGLLVLDEAHTPRNQRSCIWKTLSKVETQKRILLSGTPFQNNF 225
Query: 481 EEFYTIIDFINPGILGSFGRFKREYILPIARSRDVNAKQNQTLVEQGLLRSDQLIEITKR 540
E ++ P L ++ + + + N + +G+ ++L +
Sbjct: 226 LELCNVLGLARPKYLERLTSTLKKSGMTVTKRGKKNL--GNEINNRGI---EELKAVMLP 280
Query: 541 FILRRTNEILQQYLPPRTDLIIFCKPTAEQVEAFHKI-LTEGQLNFSNMTFNSSLGLITL 599
F+ ILQ LP + ++ P Q I +T + + L L+++
Sbjct: 281 FVHVHKGSILQSSLPGLRECVVVLNPPELQRRVLESIEVTHNRKTKNVFETEHKLSLVSV 340
Query: 600 FKKICNSTRLIKTDPY-YEERLSQVQXXXXXXXXXXXXLRILLSLLHELKTKTDEKVVVI 658
+ + ++ + + +E L R L+ + EL EKV+V
Sbjct: 341 HPSLVSRCKISEKERLSIDEALLAQLKKVRLDPNQSVKTRFLMEFV-ELCEVIKEKVLVF 399
Query: 659 SNYTQTLDIIEGHCSSE-----GYTSARLDGSTATKTRDQIVTSFNNDPS-IFVFLLSAK 712
S Y L +I H S G + G K R ++ FN+ S VFL S K
Sbjct: 400 SQYIDPLKLIMKHLVSRFKWNPGEEVLYMHGKLEQKQRQTLINEFNDPKSKAKVFLASTK 459
Query: 713 SGGVGLNLIGASRLVLFDNDWNPSIDLQAMSRIHRDGQRRPCFIYRLVTTGCIDEKILQR 772
+ G++L+GASR++L D WNP+++ QA+SR +R GQ+R + Y LV G + +
Sbjct: 460 ACSEGISLVGASRVILLDVVWNPAVERQAISRAYRIGQKRIVYTYHLVAKGTPEGPKYCK 519
Query: 773 QLMKIALS-------------KKFLDSATDQSKNDDDLFQQEELKDLFTINLSTLSNTHD 819
Q K +S K+ + A + K D + + +L D+F NL D
Sbjct: 520 QAQKDRISELVFACSSRHDKGKEKIAEAVTEDKVLDTMVEHSKLGDMFD-NLIVQPKEAD 578
Query: 820 LI 821
L+
Sbjct: 579 LV 580
>At3g24340 [L] KOG0390 DNA repair protein SNF2 family
Length = 1132
Score = 140 bits (353), Expect = 9e-33
Identities = 147/586 (25%), Positives = 235/586 (40%), Gaps = 91/586 (15%)
Query: 272 PLLSKTLRPHQREGVKFLYDCV--------MNMVHTKGDESMILERDDDIKGCLLADEMG 323
P + TL PHQ+EG +F++ + +N V KG GC+++ + G
Sbjct: 571 PGIKDTLYPHQQEGFEFIWKNLAGTTKINELNSVGVKGSG-----------GCIISHKAG 619
Query: 324 LGKXXXXXXXXXXXXKQTPYPTIINQRGVTLAGEISKVLIVCPVTLIGNWKKEFKKW--- 380
GK K+ P S +++ P TL+ W+ E +KW
Sbjct: 620 TGKTRLTVVFLQSYLKRFPN---------------SHPMVIAPATLMRTWEDEVRKWNVN 664
Query: 381 LPMNRIGVLTLH--------SRNSPTEDKAQVRSFLKVPRTYQVLIVG-----YEKLLSI 427
+P + L L SR +R V Q I+G YEKL +
Sbjct: 665 IPFYNMNSLQLSGYEDAEAVSRLEGNRHHNSIRMVKLVSWWKQKSILGISYPLYEKLAAN 724
Query: 428 KDE--LQNEKRNL----DLVICDEGHRLKNKDSKILKVLQSLDIEKKIVLSGTPIQNDLE 481
K+ +Q +R L L++ DEGH +N+ S I KVL + EK+I LSGT QN+ +
Sbjct: 725 KNTEGMQVFRRMLVELPGLLVLDEGHTPRNQSSLIWKVLTEVRTEKRIFLSGTLFQNNFK 784
Query: 482 EFYTIIDFINPGILGSFGRFKREYILPIARSRDVNAKQNQTLVEQGLLRSDQLIEITKRF 541
E ++ P + E + +V+ L + F
Sbjct: 785 ELSNVLCLARPADKDTISSRIHELSKCSQEGEHGRVNEENRIVD--------LKAMIAHF 836
Query: 542 ILRRTNEILQQYLPPRTDLIIFCKPTAEQVEAFHKILTEGQLNFSNMTFNSSLGLITLFK 601
+ ILQ+ LP D ++ P +Q KIL + + F L +++
Sbjct: 837 VHVHEGTILQESLPGLRDCVVVLNPPFQQ----KKILDRIDTSQNTFEFEHKLSAVSVHP 892
Query: 602 KI---CNSTRLIKTDPYYEERLSQVQXXXXXXXXXXXXLRILLSLLHELKTKTDEKVVVI 658
+ CN T+ K D + L+ + + EKV+V
Sbjct: 893 SLYLCCNPTK--KEDLVIGPATLGTLKRLRLKYEEGVKTKFLIDFIR-ISGTVKEKVLVY 949
Query: 659 SNYTQTLDIIE----GHCS-SEGYTSARLDGSTATKTRDQIVTSFNN-DPSIFVFLLSAK 712
S Y TL +I C +EG + G + R ++ +FN D V L S K
Sbjct: 950 SQYIDTLKLIMEQLIAECDWTEGEQILLMHGKVEQRDRQHMIDNFNKPDSGSKVLLASTK 1009
Query: 713 SGGVGLNLIGASRLVLFDNDWNPSIDLQAMSRIHRDGQRRPCFIYRLVTTGCIDEKILQR 772
+ G++L+GASR+V+ D WNPS++ QA+SR R GQ+R FIY L+ + +
Sbjct: 1010 ACSEGISLVGASRVVILDVVWNPSVESQAISRAFRIGQKRAVFIYHLMVKDTSEWNKYCK 1069
Query: 773 QLMKIALSKKFLDSATDQSK---ND--------DDLFQQEELKDLF 807
Q K +S+ S ++ K N+ D++ + E+LK +F
Sbjct: 1070 QSEKHRISELVFSSTNEKDKPINNEVVSKDRILDEMVRHEKLKHIF 1115
>At2g21450 [L] KOG0390 DNA repair protein SNF2 family
Length = 816
Score = 136 bits (343), Expect = 1e-31
Identities = 142/577 (24%), Positives = 241/577 (41%), Gaps = 98/577 (16%)
Query: 268 VIVDPLLSKTLRPHQREGVKFLYDCVMNMVHTKGDESMILERDDDIKGCLLADEMGLGKX 327
+ + P + +RPHQ EG +FL + + D+ GC+LA G GK
Sbjct: 255 MFIHPWHDQEMRPHQTEGFRFLCNNLAA---------------DEPGGCILAHAPGSGKT 299
Query: 328 XXXXXXXXXXXKQTPYPTIINQRGVTLAGEISKVLIVCPVTLIGNWKKEFKKWLPMNRIG 387
P ++ L+V P +I +WK+EF W + +I
Sbjct: 300 FLLISFLQSFMAMDPQ---------------ARPLVVLPKGIIESWKREFTLW-EVEKIP 343
Query: 388 VLTLHSRNSPTEDKAQVRSFLKVPRTYQVLIVGYEKLLSIKDELQNEKRNLD-------- 439
+L +S + + K Q++ + + +L +GY++ I + E + D
Sbjct: 344 LLDFYSVKAESR-KQQLKVLGQWIKERSILFLGYQQFTRIICDDNFEAASEDCKLILLEK 402
Query: 440 --LVICDEGHRLKNKDSKILKVLQSLDIEKKIVLSGTPIQNDLEEFYTIIDFINPGILGS 497
L+I DEGH +NK++ +L L + +K+VL+GT QN++EE + I+D + P L
Sbjct: 403 PTLLILDEGHTSRNKETYMLSSLARVKTRRKVVLTGTLFQNNVEEVFNILDLVRPKFLKR 462
Query: 498 FGRFKREYI------LPIARSRDVNAKQNQTLVEQGLLRSDQLIEITKRFILRRTNEILQ 551
G RE + I R + VN Q+ + +E + +E+T + R TN
Sbjct: 463 PGT--REIVSRIMSKAEIPRGKQVN--QSSSSIEGTFFAA---VELT---LQRSTN---- 508
Query: 552 QYLPPRTDLIIFCKPTAEQVEAFHKILTEG----------QLNFSNMTFNSSLGL--ITL 599
+ LI + + +HK G LN S++ + GL + L
Sbjct: 509 --FSAKASLIKDLREMTRNILHYHKADFSGLLPGLSEFTVMLNLSSIQRDEVKGLRKMEL 566
Query: 600 FKKICNSTRLI---KTDPYYEERLSQVQXXXXXXXXXXXXLRILLSLLH----------- 645
FK+I L K + EE S + L +L ++
Sbjct: 567 FKQISLGAALYIHPKLKSFLEENPSNGEKGFSDNNTTVMKLDKMLKKINVRDGVKMKFFL 626
Query: 646 ---ELKTKTDEKVVVISNYTQTLDIIEGHCSSE-----GYTSARLDGSTATKTRDQIVTS 697
L T EK++V S Y + +E SS G + G ++ + R+ +
Sbjct: 627 NLLALCESTGEKLLVFSQYIVPIKTLERLMSSMKGWRLGKEMFTITGDSSNEQREWSMER 686
Query: 698 FNNDPSIFVFLLSAKSGGVGLNLIGASRLVLFDNDWNPSIDLQAMSRIHRDGQRRPCFIY 757
FNN VF S K+ G G++L+GASR+++ D NPS+ QA++R +R GQ+R + Y
Sbjct: 687 FNNSLEAKVFFGSIKACGEGISLVGASRVLILDVHLNPSVTQQAVARAYRPGQKRKVYAY 746
Query: 758 RLVTTGCIDEKILQRQLMKIALSKKFLDSATDQSKND 794
+LV +E+ + K +SK + + + D
Sbjct: 747 KLVAADSPEEENYETCTRKEMMSKMWFEWNVGSGRED 783
>CE17314 [K] KOG1015 Transcription regulator XNP/ATRX DEAD-box superfamily
Length = 1359
Score = 135 bits (340), Expect = 3e-31
Identities = 97/357 (27%), Positives = 173/357 (48%), Gaps = 51/357 (14%)
Query: 252 IKDPLIMNKTENHKVSVIVDPLLSKTLRPHQREGVKFLYDCVMNMVHTKGDESMILERDD 311
+ DP E K V V L + L+PHQ G++F+YDC + D
Sbjct: 437 VLDPDSSTVDEESKKPVEVHNSLVRILKPHQAHGIQFMYDCAFESLD---------RLDT 487
Query: 312 DIKGCLLADEMGLGKXXXXXXXXXXXXKQTPYPTIINQRGVTLAGEISKVLIVCPVTLIG 371
+ G +LA MGLGK + +++++ + + +VL+V P +I
Sbjct: 488 EGSGGILAHCMGLGKTLQVITFL--------HTVLMHEK---IGEKCKRVLVVVPKNVII 536
Query: 372 NWKKEFKKWL-----PMNRIGVLTLHSRNSPTEDKAQVRSFLKVPRTYQVLIVGYE--KL 424
NW KEF+KWL ++ I V L S + ED+ + +T V+I+GY+ ++
Sbjct: 537 NWFKEFQKWLVDNDEELDTIDVNELDSYKT-IEDRRRALKAWHSSKTPSVMIIGYDLFRI 595
Query: 425 LSIKDELQNEK-----RNL----------------DLVICDEGHRLKNKDSKILKVLQSL 463
L+++D+ + +K R L D+V+CDE H+LKN DS + K + +
Sbjct: 596 LTVEDDPKKKKPKNRNRRLEKAKEDFRKYLQNPGPDMVVCDEAHKLKNDDSALSKCMVKI 655
Query: 464 DIEKKIVLSGTPIQNDLEEFYTIIDFINPGILGSFGRFKREYILPIARSRDVNAKQNQTL 523
+++I L+GTP+QN+L E++ +++F+ PG+LG+ F ++ I R R +A +
Sbjct: 656 LTKRRICLTGTPLQNNLMEYHCMVNFVKPGLLGTKTEFANRFVNIINRGRTKDASPLE-- 713
Query: 524 VEQGLLRSDQLIEITKRFILRRTNEILQQYLPPRTDLIIFCKPTAEQVEAFHKILTE 580
V R L + K+ + R+ +L + +PP+ + +I + T Q ++ L +
Sbjct: 714 VSFMKRRCHVLYDHLKKCVDRKDYRVLTEAIPPKQEYVINVRQTERQCALYNAFLND 770
Score = 94.7 bits (234), Expect = 6e-19
Identities = 49/150 (32%), Positives = 87/150 (57%), Gaps = 7/150 (4%)
Query: 675 EGYTSARLDGSTATKTRDQIVTSFNNDPSIF--VFLLSAKSGGVGLNLIGASRLVLFDND 732
EG +DGS + RD + TSFN+ ++ + L+S ++G +G N++ A+R+++FD
Sbjct: 1012 EGEDYMTIDGSVQSGKRDAVQTSFNDPLNLRARLMLISTRAGSLGTNMVAANRVIIFDAC 1071
Query: 733 WNPSIDLQAMSRIHRDGQRRPCFIYRLVTTGCIDEKILQRQLMKIALSKKFLDSATDQSK 792
WNPS D Q++ R++R GQ +P +IYR + G ++E+I +RQ+ K + S + +D A Q
Sbjct: 1072 WNPSHDTQSLFRVYRFGQTKPVYIYRFIAQGTMEERIYKRQVTKESTSMRVVDEAQIQRH 1131
Query: 793 NDDDLFQQEELKDLFTINLSTLSNTHDLIC 822
+ +L +L+ ST ++ C
Sbjct: 1132 -----YLGNDLTELYQFTPSTFDPDVEISC 1156
>7301343 [K] KOG1015 Transcription regulator XNP/ATRX DEAD-box superfamily
Length = 1311
Score = 135 bits (340), Expect = 3e-31
Identities = 90/341 (26%), Positives = 167/341 (48%), Gaps = 39/341 (11%)
Query: 240 QITYSPLF---DPVSIKDPLIMNKTENHKVSVIVDPLLSKTLRPHQREGVKFLYDCVMNM 296
Q Y+ +F + V I + ++ E+ K + VD L K L+PHQ GVKF++D
Sbjct: 414 QKLYNRIFVKSESVEINELVLDFDEESKKALLQVDKGLLKKLKPHQVAGVKFMWDACF-- 471
Query: 297 VHTKGDESMILERDDDIKGCLLADEMGLGKXXXXXXXXXXXXKQTPYPTIINQRGVTLAG 356
E++ ++ GC+LA MGLGK + ++N R
Sbjct: 472 ------ETLKESQEKPGSGCILAHCMGLGKTLQVVTLS--------HTLLVNTRRTG--- 514
Query: 357 EISKVLIVCPVTLIGNWKKEFKKWLPMNRIGVLTLHSRNSPTEDKAQVRSFLKVPRTYQV 416
+ +VLI+ P++ + NW +EF W+ + ++ + + ++ + V
Sbjct: 515 -VDRVLIISPLSTVNNWAREFTSWMKFANRNDIEVYDISRYKDKPTRIFKLNEWFNEGGV 573
Query: 417 LIVGYEKLLSIKDE----LQNEKRNL----------DLVICDEGHRLKNKDSKILKVLQS 462
I+GY+ + +E L+ ++R DLV+CDEGH LKN+ + I K +
Sbjct: 574 CILGYDMYRILANEKAKGLRKKQREQLMQALVDPGPDLVVCDEGHLLKNEKTSISKAVTR 633
Query: 463 LDIEKKIVLSGTPIQNDLEEFYTIIDFINPGILGSFGRFKREYILPIARSRDVNAKQNQT 522
+ +++IVL+GTP+QN+L E+Y +I F+ P +LG++ + ++ PI + ++ +
Sbjct: 634 MRTKRRIVLTGTPLQNNLREYYCMIQFVKPNLLGTYKEYMNRFVNPITNGQYTDSTERDL 693
Query: 523 LVEQGLLRSDQLIEITKRFILRRTNEILQQYLPPRTDLIIF 563
+ + RS L ++ + I RR +L YLPP+ + +++
Sbjct: 694 RLMKH--RSHILHKLLEGCIQRRDYSVLAPYLPPKHEYVVY 732
Score = 113 bits (282), Expect = 2e-24
Identities = 67/199 (33%), Positives = 112/199 (55%), Gaps = 30/199 (15%)
Query: 637 LRILLSLLHELKTKTDEKVVVISNYTQTLDIIEGH----------------------CSS 674
L ILL LL + + D K++V S Q+LD+IE C +
Sbjct: 900 LLILLRLLQQCEAIGD-KLLVFSQSLQSLDVIEHFLSLVDSNTKNYEFEGDVGDFKGCWT 958
Query: 675 EGYTSARLDGSTATKTRDQIVTSFNNDPSIF--VFLLSAKSGGVGLNLIGASRLVLFDND 732
G RLDGS + + R+ + FNN ++ +FL+S ++GG+G+NL+ A+R+V+FD
Sbjct: 959 SGKDYFRLDGSCSVEQREAMCKQFNNITNLRARLFLISTRAGGLGINLVAANRVVIFDVS 1018
Query: 733 WNPSIDLQAMSRIHRDGQRRPCFIYRLVTTGCIDEKILQRQLMKIALSKKFLDSATDQSK 792
WNPS D Q++ R++R GQ +PC+IYRL+ G +++K+ +RQ+ K A +K+ +D +
Sbjct: 1019 WNPSHDTQSIFRVYRFGQIKPCYIYRLIAMGTMEQKVYERQVAKQATAKRVID-----EQ 1073
Query: 793 NDDDLFQQEELKDLFTINL 811
+ Q +L +L++ L
Sbjct: 1074 QISRHYNQTDLMELYSYEL 1092
>At2g16390 [L] KOG0390 DNA repair protein SNF2 family
Length = 888
Score = 135 bits (339), Expect = 4e-31
Identities = 141/549 (25%), Positives = 247/549 (44%), Gaps = 79/549 (14%)
Query: 272 PLLSKTLRPHQREGVKFLYDCVMNMVHTKGDESMILERDDDIKGCLLADEMGLGKXXXXX 331
P + ++PHQ EG +FL N+V DD GC++A G GK
Sbjct: 344 PTHAAEMKPHQIEGFQFLCS---NLVA------------DDPGGCIMAHAPGSGKTFMII 388
Query: 332 XXXXXXXKQTPYPTIINQRGVTLAGEISKVLIVCPVTLIGNWKKEFKKWLPMNRIGVLTL 391
+ P +K L+V P ++ WKKEF +W + I +L
Sbjct: 389 SFMQSFLAKYPQ---------------AKPLVVLPKGILPTWKKEFVRW-QVEDIPLLDF 432
Query: 392 HSRNSPTEDKAQVRSFLKV-PRTYQVLIVGYEKLLSI-----KDELQNEKRNL---DLVI 442
+S + E++AQ S LK +L +GY++ +I D L ++ L ++I
Sbjct: 433 YSAKA--ENRAQQLSILKQWMEKKSILFLGYQQFSTIVCDDTTDSLSCQEILLKVPSILI 490
Query: 443 CDEGHRLKNKDSKILKVLQSLDIEKKIVLSGTPIQNDLEEFYTIIDFINPGILG---SFG 499
DEGH +N+D+ +L+ L + +K+VLSGT QN ++E + I++ + P L S
Sbjct: 491 LDEGHTPRNEDTNLLQSLAQVQTPRKVVLSGTLYQNHVKEVFNILNLVRPKFLKLDTSKS 550
Query: 500 RFKR--EYILPIARSR------DVNAKQNQTLVEQGLLRSDQ----------LIEITKRF 541
KR Y R R D+ + N+T VE L +S+ L E+TK+
Sbjct: 551 AVKRILAYTPCDVRGRLTGSNSDMASMFNET-VEHTLQKSEDFTVKIKVIQDLREMTKKV 609
Query: 542 ILRRTNEILQQYLPPRTDLIIFCKPTAEQVEAFHKILTEGQLNFSNMTFNSSLGLITLFK 601
+ + L + LP D + + +Q+ K+ E + F S++ L K
Sbjct: 610 LHYYKGDFLDE-LPGLADFTVVLNLSPKQLNEVKKLRREKR-KFKVSAVGSAIYLHPKLK 667
Query: 602 KICNSTRLIKTDPYYEERLSQVQXXXXXXXXXXXXLRILLSLLHELKTKTDEKVVVISNY 661
+ + + +D +E + ++ + L+L++ L EK++V S Y
Sbjct: 668 VFSDKSDDV-SDTTMDEMVEKLDLNEGVKA------KFFLNLIN-LCDSAGEKLLVFSQY 719
Query: 662 TQTLDIIEGHCS-SEGYTSAR----LDGSTATKTRDQIVTSFNNDPSIFVFLLSAKSGGV 716
L +E + ++G+ + L G+T+++ R+ + +FN+ P +F S K+ G
Sbjct: 720 LIPLKFLERLAALAKGWKLGKEVFVLTGNTSSEQREWSMETFNSSPDAKIFFGSIKACGE 779
Query: 717 GLNLIGASRLVLFDNDWNPSIDLQAMSRIHRDGQRRPCFIYRLVTTGCIDEKILQRQLMK 776
G++L+GASR+++ D NPS+ QA+ R R GQ++ YRL+ +E+ K
Sbjct: 780 GISLVGASRILILDVPLNPSVTRQAIGRAFRPGQKKMVHAYRLIAGSSPEEEDHNTCFKK 839
Query: 777 IALSKKFLD 785
+SK + +
Sbjct: 840 EVISKMWFE 848
>Hs14767157 [K] KOG0385 Chromatin remodeling complex WSTF-ISWI small subunit
Length = 348
Score = 134 bits (336), Expect = 9e-31
Identities = 72/186 (38%), Positives = 107/186 (56%), Gaps = 4/186 (2%)
Query: 596 LITLFKKICNSTRLIKTDPYYEERLSQVQXXXXXXXXXXXXLRILLSLLHELKTKTDEKV 655
++ L +K CN LI+ Y + ++Q IL +L ELK K KV
Sbjct: 73 IMMLLRKCCNHPYLIE---YPIDPVTQEFKIDEELVTNSGKFLILDRMLPELK-KRGHKV 128
Query: 656 VVISNYTQTLDIIEGHCSSEGYTSARLDGSTATKTRDQIVTSFNNDPSIFVFLLSAKSGG 715
++ S T LDI+ +C + +RLDGS + R++ + SFN DP +F+FL+S ++GG
Sbjct: 129 LLFSQMTSMLDILMDYCHLRDFNFSRLDGSMSYSEREKNMHSFNTDPEVFIFLVSTRAGG 188
Query: 716 VGLNLIGASRLVLFDNDWNPSIDLQAMSRIHRDGQRRPCFIYRLVTTGCIDEKILQRQLM 775
+G+NL A ++++D+DWNP DLQA R HR GQ +P +YRLVT ID+KI++R
Sbjct: 189 LGINLTAADTVIIYDSDWNPQSDLQAQDRCHRIGQTKPVVVYRLVTANTIDQKIVERAAA 248
Query: 776 KIALSK 781
K L K
Sbjct: 249 KRKLEK 254
>HsM8922362 [K] KOG0385 Chromatin remodeling complex WSTF-ISWI small subunit
Length = 310
Score = 133 bits (334), Expect = 1e-30
Identities = 72/183 (39%), Positives = 105/183 (57%), Gaps = 4/183 (2%)
Query: 599 LFKKICNSTRLIKTDPYYEERLSQVQXXXXXXXXXXXXLRILLSLLHELKTKTDEKVVVI 658
L +K CN LI+ Y + ++Q IL +L ELK K KV++
Sbjct: 3 LLRKCCNHPYLIE---YPIDPVTQEFKIDEELVTNSGKFLILDRMLPELK-KRGHKVLLF 58
Query: 659 SNYTQTLDIIEGHCSSEGYTSARLDGSTATKTRDQIVTSFNNDPSIFVFLLSAKSGGVGL 718
S T LDI+ +C + +RLDGS + R++ + SFN DP +F+FL+S ++GG+G+
Sbjct: 59 SQMTSMLDILMDYCHLRDFNFSRLDGSMSYSEREKNMHSFNTDPEVFIFLVSTRAGGLGI 118
Query: 719 NLIGASRLVLFDNDWNPSIDLQAMSRIHRDGQRRPCFIYRLVTTGCIDEKILQRQLMKIA 778
NL A ++++D+DWNP DLQA R HR GQ +P +YRLVT ID+KI++R K
Sbjct: 119 NLTAADTVIIYDSDWNPQSDLQAQDRCHRIGQTKPVVVYRLVTANTIDQKIVERAAAKRK 178
Query: 779 LSK 781
L K
Sbjct: 179 LEK 181
>CE27689 [B] KOG1000 Chromatin remodeling protein HARP/SMARCAL1 DEAD-box
superfamily
Length = 689
Score = 127 bits (319), Expect = 8e-29
Identities = 143/556 (25%), Positives = 225/556 (39%), Gaps = 111/556 (19%)
Query: 220 LVDQPTVKSALPPLSQELIGQITYSPLFDPVSIKDPLIMNKTENHKVSVIVDPLLSKTLR 279
L + VK L PL Q +IG + P P + + ++DP L + L
Sbjct: 155 LKNATAVKVELEPLPQNIIGLTNFKPKAAPSDL--------------NTVMDPSLIERLF 200
Query: 280 PHQREGVKFLYDCVMNMVHTKGDESMILERDDDIKGCLLADEMGLGKXXXXXXXXXXXXK 339
P+Q+EGV F LERD I LLADEMGLGK
Sbjct: 201 PYQKEGVIFA-----------------LERDGRI---LLADEMGLGKSVQALTIARYYKA 240
Query: 340 QTPYPTIINQRGVTLAGEISKVLIVCPVTLIGNWKKEFKKWLP-MNRIGVLTLHSRNSPT 398
P +LIVCP ++ G WKK+ + P ++RI ++ S P
Sbjct: 241 DWP------------------LLIVCPASVKGAWKKQLNTFFPIIHRIFIVDKSSDPLP- 281
Query: 399 EDKAQVRSFLKVPRTYQVLIVGYEKLLSIKDELQNEKRNLDLVICDEGHRLKNKDSKILK 458
V + V I+ YE+++ D L+ EK +I DE H L KD K +
Sbjct: 282 ----------DVCTSNTVAIMSYEQMVLKHDILKKEKYR--TIIFDESHML--KDGKARR 327
Query: 459 VLQSLDIEK----KIVLSGTPIQNDLEEFYTIIDFINPGILGSFGRFKREYILPIARSRD 514
+ D+ K I+LSGTP + E +T I I+ + +F F Y
Sbjct: 328 TKVATDLSKVALHVILLSGTPALSRPSELFTQIRLIDHKLFTNFHEFAIRY--------- 378
Query: 515 VNAKQNQTLVE-QGLLRSDQLIEIT-KRFILRRTN-EILQQYLPPRTDLIIFCKPTAEQV 571
+ KQ + E +G S++L I KR ++RR ++L+ R +++ PT +
Sbjct: 379 CDGKQGRFCFEAKGCTNSEELAAIMFKRLMIRRLKADVLKDLPEKRREVVYVSGPT---I 435
Query: 572 EAFHKILTEGQLNFSNMTFNSSLGLITLFKKICNSTRLIKTDPYYEERLSQVQXXXXXXX 631
+A L + + ++ + NS + + T ++K E L
Sbjct: 436 DARMDDLQKARADYEKV--NSMERKHESLLEFYSLTGIVKAAAVCEHILEN--------- 484
Query: 632 XXXXXLRILLSLLHELKTKTDEKVVVISNYTQTLDIIEGHCSSEGYTSARLDGSTATKTR 691
+ KV++ +++ LD I+ + S R+DG T + R
Sbjct: 485 -------------YFYPDAPPRKVLIFAHHQIVLDTIQVEVNKRKLGSIRIDGKTPSHRR 531
Query: 692 DQIVTSFNNDPSIFVFLLSAKSGGVGLNLIGASRLVLFDNDWNPSIDLQAMSRIHRDGQR 751
+ SF D +I V +LS + GVG+ L AS +V + +NP +QA R HR GQ+
Sbjct: 532 TALCDSFQTDDNIRVAVLSITAAGVGITLTAASVVVFAEIHFNPGYLVQAEDRAHRVGQK 591
Query: 752 RPCFIYRLVTTGCIDE 767
F+ L+ D+
Sbjct: 592 DSVFVQYLIAKKTADD 607
>CE27688 [B] KOG1000 Chromatin remodeling protein HARP/SMARCAL1 DEAD-box
superfamily
Length = 687
Score = 127 bits (319), Expect = 8e-29
Identities = 143/556 (25%), Positives = 225/556 (39%), Gaps = 111/556 (19%)
Query: 220 LVDQPTVKSALPPLSQELIGQITYSPLFDPVSIKDPLIMNKTENHKVSVIVDPLLSKTLR 279
L + VK L PL Q +IG + P P + + ++DP L + L
Sbjct: 153 LKNATAVKVELEPLPQNIIGLTNFKPKAAPSDL--------------NTVMDPSLIERLF 198
Query: 280 PHQREGVKFLYDCVMNMVHTKGDESMILERDDDIKGCLLADEMGLGKXXXXXXXXXXXXK 339
P+Q+EGV F LERD I LLADEMGLGK
Sbjct: 199 PYQKEGVIFA-----------------LERDGRI---LLADEMGLGKSVQALTIARYYKA 238
Query: 340 QTPYPTIINQRGVTLAGEISKVLIVCPVTLIGNWKKEFKKWLP-MNRIGVLTLHSRNSPT 398
P +LIVCP ++ G WKK+ + P ++RI ++ S P
Sbjct: 239 DWP------------------LLIVCPASVKGAWKKQLNTFFPIIHRIFIVDKSSDPLP- 279
Query: 399 EDKAQVRSFLKVPRTYQVLIVGYEKLLSIKDELQNEKRNLDLVICDEGHRLKNKDSKILK 458
V + V I+ YE+++ D L+ EK +I DE H L KD K +
Sbjct: 280 ----------DVCTSNTVAIMSYEQMVLKHDILKKEKYR--TIIFDESHML--KDGKARR 325
Query: 459 VLQSLDIEK----KIVLSGTPIQNDLEEFYTIIDFINPGILGSFGRFKREYILPIARSRD 514
+ D+ K I+LSGTP + E +T I I+ + +F F Y
Sbjct: 326 TKVATDLSKVALHVILLSGTPALSRPSELFTQIRLIDHKLFTNFHEFAIRY--------- 376
Query: 515 VNAKQNQTLVE-QGLLRSDQLIEIT-KRFILRRTN-EILQQYLPPRTDLIIFCKPTAEQV 571
+ KQ + E +G S++L I KR ++RR ++L+ R +++ PT +
Sbjct: 377 CDGKQGRFCFEAKGCTNSEELAAIMFKRLMIRRLKADVLKDLPEKRREVVYVSGPT---I 433
Query: 572 EAFHKILTEGQLNFSNMTFNSSLGLITLFKKICNSTRLIKTDPYYEERLSQVQXXXXXXX 631
+A L + + ++ + NS + + T ++K E L
Sbjct: 434 DARMDDLQKARADYEKV--NSMERKHESLLEFYSLTGIVKAAAVCEHILEN--------- 482
Query: 632 XXXXXLRILLSLLHELKTKTDEKVVVISNYTQTLDIIEGHCSSEGYTSARLDGSTATKTR 691
+ KV++ +++ LD I+ + S R+DG T + R
Sbjct: 483 -------------YFYPDAPPRKVLIFAHHQIVLDTIQVEVNKRKLGSIRIDGKTPSHRR 529
Query: 692 DQIVTSFNNDPSIFVFLLSAKSGGVGLNLIGASRLVLFDNDWNPSIDLQAMSRIHRDGQR 751
+ SF D +I V +LS + GVG+ L AS +V + +NP +QA R HR GQ+
Sbjct: 530 TALCDSFQTDDNIRVAVLSITAAGVGITLTAASVVVFAEIHFNPGYLVQAEDRAHRVGQK 589
Query: 752 RPCFIYRLVTTGCIDE 767
F+ L+ D+
Sbjct: 590 DSVFVQYLIAKKTADD 605
>At3g12810 [R] KOG0391 SNF2 family DNA-dependent ATPase
Length = 1048
Score = 126 bits (316), Expect = 2e-28
Identities = 67/173 (38%), Positives = 108/173 (61%), Gaps = 7/173 (4%)
Query: 637 LRILLSLLHELKTKTDEKVVVISNYTQTLDIIEGHCSSEGYTSARLDGSTATKTRDQIVT 696
L+ L LL +LK + ++ + T+ LD++E + GYT RLDGST + R ++
Sbjct: 662 LQELAMLLRKLKFG-GHRALIFTQMTKMLDVLEAFINLYGYTYMRLDGSTPPEERQTLMQ 720
Query: 697 SFNNDPSIFVFLLSAKSGGVGLNLIGASRLVLFDNDWNPSIDLQAMSRIHRDGQRRPCFI 756
FN +P IF+F+LS +SGGVG+NL+GA ++ +D+DWNP++D QA R HR GQ R I
Sbjct: 721 RFNTNPKIFLFILSTRSGGVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHI 780
Query: 757 YRLVTTGCIDEKILQRQLMKIALSKKFLDSATDQS-KNDDDLFQQEELKDLFT 808
YRL++ I+E IL++ A K+ LD+ Q+ + + + F++ + +LF+
Sbjct: 781 YRLISESTIEENILKK-----ANQKRVLDNLVIQNGEYNTEFFKKLDPMELFS 828
Score = 116 bits (291), Expect = 1e-25
Identities = 83/300 (27%), Positives = 148/300 (48%), Gaps = 30/300 (10%)
Query: 317 LLADEMGLGKXXXXXXXXXXXXKQTPYPTIINQRGVTLAGEISKVLIVCPVTLIGNWKKE 376
+LADEMGLGK + +G+ LIV P +++ NW+ E
Sbjct: 143 ILADEMGLGKTIMTIALLAH---------LACDKGIW-----GPHLIVVPTSVMLNWETE 188
Query: 377 FKKWLPMNRIGVLTLHSRNSPTEDKAQVRSFLKVPRTYQVLIVGYEKLLSIKDELQNEKR 436
F KW P +I L S E K + + ++K+ ++ V I Y L I+D +++
Sbjct: 189 FLKWCPAFKI----LTYFGSAKERKLKRQGWMKL-NSFHVCITTYR--LVIQDSKMFKRK 241
Query: 437 NLDLVICDEGHRLKNKDSKILKVLQSLDIEKKIVLSGTPIQNDLEEFYTIIDFINPGILG 496
+I DE H +KN S+ + L + + +++I+L+GTP+QNDL E ++++ F+ P +
Sbjct: 242 KWKYLILDEAHLIKNWKSQRWQTLLNFNSKRRILLTGTPLQNDLMELWSLMHFLMPHVFQ 301
Query: 497 SFGRFKREYILPIARSRDVNAKQNQTLVEQGLLRSDQLIEITKRFILRRTNEILQQYLPP 556
S FK + PIA + K N+ ++ D+L + + F+LRR +++ LP
Sbjct: 302 SHQEFKDWFCNPIAGMVEGQEKINKEVI-------DRLHNVLRPFLLRRLKRDVEKQLPS 354
Query: 557 RTDLIIFCKPTAEQVEAFHKIL--TEGQLNFSNMTFNSSLGLITLFKKICNSTRLIKTDP 614
+ + +IFC+ + Q + + TE Q ++ +F + +I +K+CN L + P
Sbjct: 355 KHEHVIFCRLSKRQRNLYEDFIASTETQATLTSGSFFGMISIIMQLRKVCNHPDLFEGRP 414
>7291744 [R] KOG1016 Predicted DNA helicase DEAD-box superfamily
Length = 1534
Score = 126 bits (316), Expect = 2e-28
Identities = 95/346 (27%), Positives = 153/346 (43%), Gaps = 64/346 (18%)
Query: 272 PLLSKTLRPHQREGVKFLYDCVMNMVHTKGDESMILERDDDIKGCLLADEMGLGKXXXXX 331
P ++K ++PHQ GV+FLYD ++ S GC+LA MGLGK
Sbjct: 378 PQIAKVIKPHQIGGVRFLYDNIIESTRRYNKSSGF--------GCILAHSMGLGKTLQVV 429
Query: 332 XXXXXXXKQTPYPTIINQRGVTLAGEISKVLIVCPVTLIGNWKKEFKKWLPM-------- 383
+ T T VL V P+ + NW EF W+P
Sbjct: 430 SFCDIFLRHTSAKT---------------VLCVMPINTLQNWLSEFNMWIPRYSTDSNVR 474
Query: 384 -NRIGVLTLHSRNSPTEDKAQVRSFLKVPRTYQVLIVGYE--KLLSIK------------ 428
+ L+ + +A+V L VL++GYE +LL++K
Sbjct: 475 PRNFDIFVLNDQQKTLTARAKV--ILNWVHDGGVLLIGYELFRLLALKLVKTRKRKGSVI 532
Query: 429 --------DELQN------EKRNLDLVICDEGHRLKNKDSKILKVLQSLDIEKKIVLSGT 474
+L N K DLVICDEGHR+KN + I L+ + ++IVL+G
Sbjct: 533 RPDGMDSSSDLMNLVYEALVKPGPDLVICDEGHRIKNSHAGISLALKEIRTRRRIVLTGY 592
Query: 475 PIQNDLEEFYTIIDFINPGILGSFGRFKREYILPIARSRDVNAKQNQTLVEQGLLRSDQL 534
P+QN+L E++ ++DF+ P LG+ F + PI + V++ + ++ R+ L
Sbjct: 593 PLQNNLLEYWCMVDFVRPNYLGTRTEFCNMFERPIQNGQCVDSTPDD--IKLMRYRAHVL 650
Query: 535 IEITKRFILRRTNEILQQYLPPRTDLIIFCKPTAEQVEAFHKILTE 580
+ F+ RR++ +LQ LP + + +I K TA Q + + +T+
Sbjct: 651 HSLLLGFVQRRSHTVLQLTLPQKYEYVILVKMTAFQRKLYDTFMTD 696
>Hs20336209 [K] KOG1015 Transcription regulator XNP/ATRX DEAD-box superfamily
Length = 2492
Score = 125 bits (314), Expect = 3e-28
Identities = 97/355 (27%), Positives = 169/355 (47%), Gaps = 50/355 (14%)
Query: 244 SPLFDPVSIKDPLIMNKTENHKVSVI-VDPLLSKTLRPHQREGVKFLYDCVMNMVHTKGD 302
SP P++ K L++++ E K ++ V + L+PHQ +GV+F++DC
Sbjct: 1527 SPTKCPITTK--LVLDEDEETKEPLVQVHRNMVIKLKPHQVDGVQFMWDCCC-------- 1576
Query: 303 ESMILERDDDIKGCLLADEMGLGKXXXXXXXXXXXXKQTPYPTIINQRGVTLAGEI--SK 360
ES+ + GC+LA MGLGK V L ++ S
Sbjct: 1577 ESVKKTKKSPGSGCILAHCMGLGKTLQVVSFLHT---------------VLLCDKLDFST 1621
Query: 361 VLIVCPVTLIGNWKKEFKKWLPMNRIGVLTLHSRNSPTEDKAQVRSFL--KVPRTYQVLI 418
L+VCP+ NW EF+KW + L T + Q RS++ + V+I
Sbjct: 1622 ALVVCPLNTALNWMNEFEKWQEGLKDDE-KLEVSELATVKRPQERSYMLQRWQEDGGVMI 1680
Query: 419 VGYEKLLSIKDELQNEKRNL-------------DLVICDEGHRLKNKDSKILKVLQSLDI 465
+GYE ++ + R L D V+CDEGH LKN+ S + K + S+
Sbjct: 1681 IGYEMYRNLAQGRNVKSRKLKEIFNKALVDPGPDFVVCDEGHILKNEASAVSKAMNSIRS 1740
Query: 466 EKKIVLSGTPIQNDLEEFYTIIDFINPGILGSFGRFKREYILPIARSRDVNAKQNQTLVE 525
++I+L+GTP+QN+L E++ +++FI +LGS F+ +I PI + ++ T+V+
Sbjct: 1741 RRRIILTGTPLQNNLIEYHCMVNFIKENLLGSIKEFRNRFINPIQNGQCADS----TMVD 1796
Query: 526 QGLL--RSDQLIEITKRFILRRTNEILQQYLPPRTDLIIFCKPTAEQVEAFHKIL 578
++ R+ L E+ + R+ L ++LPP+ + ++ + T+ Q + + L
Sbjct: 1797 VRVMKKRAHILYEMLAGCVQRKDYTALTKFLPPKHEYVLAVRMTSIQCKLYQYYL 1851
Score = 100 bits (249), Expect = 1e-20
Identities = 48/138 (34%), Positives = 87/138 (62%), Gaps = 7/138 (5%)
Query: 681 RLDGSTATKTRDQIVTSFNNDPSIF--VFLLSAKSGGVGLNLIGASRLVLFDNDWNPSID 738
RLDGST ++R + FN++ ++ +F++S K+G +G+NL+ A+R+++FD WNPS D
Sbjct: 2085 RLDGSTTAQSRKKWAEEFNDETNVRGRLFIISTKAGSLGINLVAANRVIIFDASWNPSYD 2144
Query: 739 LQAMSRIHRDGQRRPCFIYRLVTTGCIDEKILQRQLMKIALSKKFLDSATDQSKNDDDLF 798
+Q++ R++R GQ +P ++YR + G +++KI RQ+ K +LS + +D + + F
Sbjct: 2145 IQSIFRVYRFGQTKPVYVYRFLAQGTMEDKIYDRQVTKQSLSFRVVD-----QQQVERHF 2199
Query: 799 QQEELKDLFTINLSTLSN 816
EL +L+T L +
Sbjct: 2200 TMNELTELYTFEPDLLDD 2217
>Hs20336207 [K] KOG1015 Transcription regulator XNP/ATRX DEAD-box superfamily
Length = 2288
Score = 125 bits (314), Expect = 3e-28
Identities = 97/355 (27%), Positives = 169/355 (47%), Gaps = 50/355 (14%)
Query: 244 SPLFDPVSIKDPLIMNKTENHKVSVI-VDPLLSKTLRPHQREGVKFLYDCVMNMVHTKGD 302
SP P++ K L++++ E K ++ V + L+PHQ +GV+F++DC
Sbjct: 1323 SPTKCPITTK--LVLDEDEETKEPLVQVHRNMVIKLKPHQVDGVQFMWDCCC-------- 1372
Query: 303 ESMILERDDDIKGCLLADEMGLGKXXXXXXXXXXXXKQTPYPTIINQRGVTLAGEI--SK 360
ES+ + GC+LA MGLGK V L ++ S
Sbjct: 1373 ESVKKTKKSPGSGCILAHCMGLGKTLQVVSFLHT---------------VLLCDKLDFST 1417
Query: 361 VLIVCPVTLIGNWKKEFKKWLPMNRIGVLTLHSRNSPTEDKAQVRSFL--KVPRTYQVLI 418
L+VCP+ NW EF+KW + L T + Q RS++ + V+I
Sbjct: 1418 ALVVCPLNTALNWMNEFEKWQEGLKDDE-KLEVSELATVKRPQERSYMLQRWQEDGGVMI 1476
Query: 419 VGYEKLLSIKDELQNEKRNL-------------DLVICDEGHRLKNKDSKILKVLQSLDI 465
+GYE ++ + R L D V+CDEGH LKN+ S + K + S+
Sbjct: 1477 IGYEMYRNLAQGRNVKSRKLKEIFNKALVDPGPDFVVCDEGHILKNEASAVSKAMNSIRS 1536
Query: 466 EKKIVLSGTPIQNDLEEFYTIIDFINPGILGSFGRFKREYILPIARSRDVNAKQNQTLVE 525
++I+L+GTP+QN+L E++ +++FI +LGS F+ +I PI + ++ T+V+
Sbjct: 1537 RRRIILTGTPLQNNLIEYHCMVNFIKENLLGSIKEFRNRFINPIQNGQCADS----TMVD 1592
Query: 526 QGLL--RSDQLIEITKRFILRRTNEILQQYLPPRTDLIIFCKPTAEQVEAFHKIL 578
++ R+ L E+ + R+ L ++LPP+ + ++ + T+ Q + + L
Sbjct: 1593 VRVMKKRAHILYEMLAGCVQRKDYTALTKFLPPKHEYVLAVRMTSIQCKLYQYYL 1647
Score = 100 bits (249), Expect = 1e-20
Identities = 48/138 (34%), Positives = 87/138 (62%), Gaps = 7/138 (5%)
Query: 681 RLDGSTATKTRDQIVTSFNNDPSIF--VFLLSAKSGGVGLNLIGASRLVLFDNDWNPSID 738
RLDGST ++R + FN++ ++ +F++S K+G +G+NL+ A+R+++FD WNPS D
Sbjct: 1881 RLDGSTTAQSRKKWAEEFNDETNVRGRLFIISTKAGSLGINLVAANRVIIFDASWNPSYD 1940
Query: 739 LQAMSRIHRDGQRRPCFIYRLVTTGCIDEKILQRQLMKIALSKKFLDSATDQSKNDDDLF 798
+Q++ R++R GQ +P ++YR + G +++KI RQ+ K +LS + +D + + F
Sbjct: 1941 IQSIFRVYRFGQTKPVYVYRFLAQGTMEDKIYDRQVTKQSLSFRVVD-----QQQVERHF 1995
Query: 799 QQEELKDLFTINLSTLSN 816
EL +L+T L +
Sbjct: 1996 TMNELTELYTFEPDLLDD 2013
>Hs20336205 [K] KOG1015 Transcription regulator XNP/ATRX DEAD-box superfamily
Length = 2454
Score = 125 bits (314), Expect = 3e-28
Identities = 97/355 (27%), Positives = 169/355 (47%), Gaps = 50/355 (14%)
Query: 244 SPLFDPVSIKDPLIMNKTENHKVSVI-VDPLLSKTLRPHQREGVKFLYDCVMNMVHTKGD 302
SP P++ K L++++ E K ++ V + L+PHQ +GV+F++DC
Sbjct: 1489 SPTKCPITTK--LVLDEDEETKEPLVQVHRNMVIKLKPHQVDGVQFMWDCCC-------- 1538
Query: 303 ESMILERDDDIKGCLLADEMGLGKXXXXXXXXXXXXKQTPYPTIINQRGVTLAGEI--SK 360
ES+ + GC+LA MGLGK V L ++ S
Sbjct: 1539 ESVKKTKKSPGSGCILAHCMGLGKTLQVVSFLHT---------------VLLCDKLDFST 1583
Query: 361 VLIVCPVTLIGNWKKEFKKWLPMNRIGVLTLHSRNSPTEDKAQVRSFL--KVPRTYQVLI 418
L+VCP+ NW EF+KW + L T + Q RS++ + V+I
Sbjct: 1584 ALVVCPLNTALNWMNEFEKWQEGLKDDE-KLEVSELATVKRPQERSYMLQRWQEDGGVMI 1642
Query: 419 VGYEKLLSIKDELQNEKRNL-------------DLVICDEGHRLKNKDSKILKVLQSLDI 465
+GYE ++ + R L D V+CDEGH LKN+ S + K + S+
Sbjct: 1643 IGYEMYRNLAQGRNVKSRKLKEIFNKALVDPGPDFVVCDEGHILKNEASAVSKAMNSIRS 1702
Query: 466 EKKIVLSGTPIQNDLEEFYTIIDFINPGILGSFGRFKREYILPIARSRDVNAKQNQTLVE 525
++I+L+GTP+QN+L E++ +++FI +LGS F+ +I PI + ++ T+V+
Sbjct: 1703 RRRIILTGTPLQNNLIEYHCMVNFIKENLLGSIKEFRNRFINPIQNGQCADS----TMVD 1758
Query: 526 QGLL--RSDQLIEITKRFILRRTNEILQQYLPPRTDLIIFCKPTAEQVEAFHKIL 578
++ R+ L E+ + R+ L ++LPP+ + ++ + T+ Q + + L
Sbjct: 1759 VRVMKKRAHILYEMLAGCVQRKDYTALTKFLPPKHEYVLAVRMTSIQCKLYQYYL 1813
Score = 100 bits (249), Expect = 1e-20
Identities = 48/138 (34%), Positives = 87/138 (62%), Gaps = 7/138 (5%)
Query: 681 RLDGSTATKTRDQIVTSFNNDPSIF--VFLLSAKSGGVGLNLIGASRLVLFDNDWNPSID 738
RLDGST ++R + FN++ ++ +F++S K+G +G+NL+ A+R+++FD WNPS D
Sbjct: 2047 RLDGSTTAQSRKKWAEEFNDETNVRGRLFIISTKAGSLGINLVAANRVIIFDASWNPSYD 2106
Query: 739 LQAMSRIHRDGQRRPCFIYRLVTTGCIDEKILQRQLMKIALSKKFLDSATDQSKNDDDLF 798
+Q++ R++R GQ +P ++YR + G +++KI RQ+ K +LS + +D + + F
Sbjct: 2107 IQSIFRVYRFGQTKPVYVYRFLAQGTMEDKIYDRQVTKQSLSFRVVD-----QQQVERHF 2161
Query: 799 QQEELKDLFTINLSTLSN 816
EL +L+T L +
Sbjct: 2162 TMNELTELYTFEPDLLDD 2179
>Hs5730067 [R] KOG0391 SNF2 family DNA-dependent ATPase
Length = 2971
Score = 125 bits (313), Expect = 4e-28
Identities = 68/181 (37%), Positives = 106/181 (57%), Gaps = 5/181 (2%)
Query: 637 LRILLSLLHELKTKTDEKVVVISNYTQTLDIIEGHCSSEGYTSARLDGSTATKTRDQIVT 696
L+ L LL +LK + +V++ + T+ LD++E + G+ RLDGST + R ++
Sbjct: 1786 LQTLAVLLRQLKAE-GHRVLIFTQMTRMLDVLEQFLTYHGHLYLRLDGSTRVEQRQALME 1844
Query: 697 SFNNDPSIFVFLLSAKSGGVGLNLIGASRLVLFDNDWNPSIDLQAMSRIHRDGQRRPCFI 756
FN D IF F+LS +SGGVG+NL GA +V +D+DWNP++D QA R HR GQ R I
Sbjct: 1845 RFNADKRIFCFILSTRSGGVGVNLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHI 1904
Query: 757 YRLVTTGCIDEKILQRQLMKIALSKKFLDSATDQSKNDDDLFQQEELKDLFTINLSTLSN 816
YRL++ ++E IL++ K L D A + F+Q+ +++LF + L S+
Sbjct: 1905 YRLISERTVEENILKKANQKRMLG----DMAIEGGNFTTAYFKQQTIRELFDMPLEEPSS 1960
Query: 817 T 817
+
Sbjct: 1961 S 1961
Score = 99.8 bits (247), Expect = 2e-20
Identities = 73/300 (24%), Positives = 141/300 (46%), Gaps = 30/300 (10%)
Query: 317 LLADEMGLGKXXXXXXXXXXXXKQTPYPTIINQRGVTLAGEISKVLIVCPVTLIGNWKKE 376
+LADEMGLGK + G LI+ P +++ NW+ E
Sbjct: 443 ILADEMGLGKTIQTISLLAHLACEK--------------GNWGPHLIIVPTSVMLNWEME 488
Query: 377 FKKWLPMNRIGVLTLHSRNSPTEDKAQVRSFLKVPRTYQVLIVGYEKLLSIKDELQNEKR 436
K+W P +I LT + E K + + + K P + V I Y+ L ++D ++
Sbjct: 489 LKRWCPSFKI--LTYYGAQK--ERKLKRQGWTK-PNAFHVCITSYK--LVLQDHQAFRRK 541
Query: 437 NLDLVICDEGHRLKNKDSKILKVLQSLDIEKKIVLSGTPIQNDLEEFYTIIDFINPGILG 496
N +I DE +KN S+ + L + + +++++L+GTP+QN L E ++++ F+ P +
Sbjct: 542 NWRYLILDEAQNIKNFKSQRWQSLLNFNSQRRLLLTGTPLQNSLMELWSLMHFLMPHVFQ 601
Query: 497 SFGRFKREYILPIARSRDVNAKQNQTLVEQGLLRSDQLIEITKRFILRRTNEILQQYLPP 556
S FK + P+ + + + N+ LV+ +L ++ + F+LRR +++ +P
Sbjct: 602 SHREFKEWFSNPLTGMIEGSQEYNEGLVK-------RLHKVLRPFLLRRVKVDVEKQMPK 654
Query: 557 RTDLIIFCKPTAEQVEAFHKILTEGQLNFSNMT--FNSSLGLITLFKKICNSTRLIKTDP 614
+ + +I C+ + Q + + + + T F S + ++ +K+CN L P
Sbjct: 655 KYEHVIRCRLSKRQRCLYDDFMAQTTTKETLATGHFMSVINILMQLRKVCNHPNLFDPRP 714
>CE25717 [R] KOG0391 SNF2 family DNA-dependent ATPase
Length = 1933
Score = 122 bits (306), Expect = 3e-27
Identities = 85/313 (27%), Positives = 151/313 (48%), Gaps = 27/313 (8%)
Query: 514 DVNAKQNQTLVEQGLLRSDQLIEITKRFILRRTNEILQQYLPPRTDLIIFCKPTAEQVEA 573
++ A+ + VE+ + ++L+E + + R Y+ P C+P++ + +
Sbjct: 1138 EIIAEFPRLAVEEDEVVQERLLEYCELLVQR-----FGMYVEPVLTDAWQCRPSSSGLPS 1192
Query: 574 FHKILTEGQLNFSNMTFNSSLGLITLFKKICNSTRLIKTDPYYEERLSQVQXXXXXXXXX 633
+ + N SN+ NS L+ + + + E RL +
Sbjct: 1193 YIRN------NLSNIELNSRSLLLNTSTNFDTRMSISRALQFPELRLIEYDCGKLQT--- 1243
Query: 634 XXXLRILLSLLHELKTKTDEKVVVISNYTQTLDIIEGHCSSEGYTSARLDGSTATKTRDQ 693
L +LL L+ K + ++ + ++ LD+++ S GY RLDG+T + R
Sbjct: 1244 ---LAVLLRQLYLYK----HRCLIFTQMSKMLDVLQTFLSHHGYQYFRLDGTTGVEQRQA 1296
Query: 694 IVTSFNNDPSIFVFLLSAKSGGVGLNLIGASRLVLFDNDWNPSIDLQAMSRIHRDGQRRP 753
++ FN DP +F F+LS +SGGVG+NL GA ++ +D+DWNP++D QA R HR GQ R
Sbjct: 1297 MMERFNADPKVFCFILSTRSGGVGVNLTGADTVIFYDSDWNPTMDAQAQDRCHRIGQTRN 1356
Query: 754 CFIYRLVTTGCIDEKILQRQLMKIALSKKFLDSA------TDQSKNDDDLFQQEELKDLF 807
IYRL++ I+E IL++ K L + +D A QS + DLF E ++
Sbjct: 1357 VSIYRLISERTIEENILRKATQKRRLGELAIDEAGFTPEFFKQSDSIRDLFDGENVEVTA 1416
Query: 808 TINLSTLSNTHDL 820
+++T + ++
Sbjct: 1417 VADVATTMSEKEM 1429
Score = 104 bits (259), Expect = 7e-22
Identities = 90/334 (26%), Positives = 154/334 (45%), Gaps = 37/334 (11%)
Query: 286 VKFLYDCVMNMVHTKGDESMILERDDDIKGCLLADEMGLGKXXXXXXXXXXXXKQTPYPT 345
V FL + G + M+ + ++ G +LADEMGLGK T
Sbjct: 589 VPFLIRGQLREYQMVGLDWMVTLYEKNLNG-ILADEMGLGKTIQ---------------T 632
Query: 346 IINQRGVTLAGEI-SKVLIVCPVTLIGNWKKEFKKWLPMNRIGVLTLHSRNSPTEDKAQV 404
I + + I LIV P ++I NW+ EFKKW P +I LT +++A+
Sbjct: 633 ISLLAHMACSESIWGPHLIVVPTSVILNWEMEFKKWCPALKI--LTYFGT---AKERAEK 687
Query: 405 RSFLKVPRTYQVLIVGYEKLLSIKDELQNEKRNLDLVICDEGHRLKNKDSKILKVLQSLD 464
R P + V I Y+ + +D ++R +I DE +KN S+ + L ++
Sbjct: 688 RKGWMKPNCFHVCITSYKTVT--QDIRAFKQRAWQYLILDEAQNIKNWKSQRWQALLNVR 745
Query: 465 IEKKIVLSGTPIQNDLEEFYTIIDFINPGILGSFGRFKREYILPIARSRDVNAKQNQTLV 524
++++L+GTP+QN L E ++++ F+ P I S FK + P+ + N + N L+
Sbjct: 746 ARRRLLLTGTPLQNSLMELWSLMHFLMPTIFSSHDDFKDWFSNPLTGMMEGNMEFNAPLI 805
Query: 525 EQGLLRSDQLIEITKRFILRRTNEILQQYLPPRTDLIIFCKPTAEQVEAFHKIL----TE 580
+L ++ + FILRR + +++ LP +T+ I+ C + Q + + T+
Sbjct: 806 -------GRLHKVLRPFILRRLKKEVEKQLPEKTEHIVNCSLSKRQRYLYDDFMSRRSTK 858
Query: 581 GQLNFSNMTFNSSLGLITLFKKICNSTRLIKTDP 614
L NM S L ++ +K CN L + P
Sbjct: 859 ENLKSGNMM--SVLNIVMQLRKCCNHPNLFEPRP 890
>CE17477 [R] KOG1016 Predicted DNA helicase DEAD-box superfamily
Length = 1274
Score = 117 bits (293), Expect = 8e-26
Identities = 102/421 (24%), Positives = 181/421 (42%), Gaps = 95/421 (22%)
Query: 274 LSKTLRPHQREGVKFLYDCVMNMVHTKGDESMILERDDDIKGCLLADEMGLGKXXXXXXX 333
L+ L+PHQ G++F+YD N + + G+ + D GC+LA MGLGK
Sbjct: 252 LTHVLQPHQLGGIRFMYD---NTIESLGEY-----KKSDGFGCILAHSMGLGKTIQVITF 303
Query: 334 XXXXXKQTPYPTIINQRGVTLAGEISKVLIVCPVTLIGNWKKEFKKWLPM-----NRI-- 386
+ T + KVL++ P+ I NW E+ KW+P +RI
Sbjct: 304 SEIFLRAT---------------KAKKVLVIVPINTIQNWYSEYDKWIPKFSDTGDRIRS 348
Query: 387 --------GVLTLHSRNSPTEDKAQVRSFLKVPRTYQVLIV------------------- 419
GV T R + E Q + V L++
Sbjct: 349 FEVFLLGDGVKTFDQRVNLIEQWDQTGGVMLVGYDMFRLLIKMTLPKKQKKGRPKLNLSG 408
Query: 420 ---GYEKLLSIKDELQNEKRNLD---------------------------LVICDEGHRL 449
G+ K S +L++E+ + LV+CDEGH++
Sbjct: 409 ISSGFSKDSSEDQKLRDEELEFETGFTSGGRVRQEAYSLIRSALLEPGPDLVVCDEGHKI 468
Query: 450 KNKDSKILKVLQSLDIEKKIVLSGTPIQNDLEEFYTIIDFINPGILGSFGRFKREYILPI 509
KN ++I L +++ +++IVL+G P+QN+L E++ +IDF+ P LG+ F + PI
Sbjct: 469 KNITAEISMTLGAINTKRRIVLTGYPLQNNLLEYFCMIDFVRPKYLGTRKSFIDRFEKPI 528
Query: 510 ARSRDVNAKQNQTLVEQGLLRSDQLIEITKRFILRRTNEILQQYLPPRTDLIIFCKPTAE 569
+ V++ + V+ L R+ L+E+ K F+ RRT+ +L++ LP + ++ + +
Sbjct: 529 KNGQCVDSSPDD--VKIALQRTHVLVELVKGFVQRRTHHLLKKILPESKEYVLLLRKSQI 586
Query: 570 QVEAFHKIL--TEGQLNFSNMTFNSSLGLITLFKKICNST----RLIKTDPYYEERLSQV 623
Q + + + + ++ +N + L + KI N RL++ EE +V
Sbjct: 587 QRQLYRNFVLWAKNEIAANNDAVFNPLMAFSACSKIWNHPDILYRLVEQKKRAEEDKKRV 646
Query: 624 Q 624
+
Sbjct: 647 E 647
Score = 103 bits (256), Expect = 2e-21
Identities = 57/182 (31%), Positives = 99/182 (54%), Gaps = 20/182 (10%)
Query: 639 ILLSLLHELKTKTDEKVVVISNYTQTLDIIE--------------GHCSSEGYTSARLDG 684
I L +L E T+ EK+++ S LD++E G + RLDG
Sbjct: 781 ISLEILDE-STQIGEKILIFSQNLTALDMLEEILKKRQIRGKDGPGQRWEKNRNYLRLDG 839
Query: 685 STATKTRDQIVTSFNNDPSIFVFLLSAKSGGVGLNLIGASRLVLFDNDWNPSIDLQAMSR 744
+T+ R++++ FN++P + +FL+S ++G +G+NL+ A+R ++ D WNP D QA+ R
Sbjct: 840 TTSGADREKLINRFNSEPGLSLFLISTRAGSLGINLVSANRCIIIDACWNPCHDAQAVCR 899
Query: 745 IHRDGQRRPCFIYRLVTTGCIDEKILQRQLMKIALSKKFLDSATDQSKNDDDLFQQEELK 804
++R GQ++ F+YRL+ ++ I RQ+ K L ++ +D A D Q+EL+
Sbjct: 900 VYRYGQQKKTFVYRLIMDNSMERSIFNRQISKHGLQQRVVDDA-----QVDANISQKELE 954
Query: 805 DL 806
L
Sbjct: 955 TL 956
>Hs20538502 [R] KOG1016 Predicted DNA helicase DEAD-box superfamily
Length = 1359
Score = 116 bits (291), Expect = 1e-25
Identities = 95/365 (26%), Positives = 162/365 (44%), Gaps = 82/365 (22%)
Query: 267 SVIVDPLLSKTLRPHQREGVKFLYDCVMNMVHTKGDESMILERDDDIKGCLLADEMGLGK 326
+V + P L++ ++PHQ G++FLYD N+V ES+ + GC+LA MGLGK
Sbjct: 152 NVFLAPQLARAVKPHQIGGIRFLYD---NLV-----ESLERFKTSSGFGCILAHSMGLGK 203
Query: 327 XXXXXXXXXXXXKQTPYPTIINQRGVTLAGEISKVLIVCPVTLIGNWKKEFKKWLPMNRI 386
+ TP T VL + PV + NW EF WLP
Sbjct: 204 TLQVISFIDVLFRHTPAKT---------------VLAIVPVNTLQNWLAEFNMWLPPPE- 247
Query: 387 GVLTLHSRNSPTE-------------DKAQVRSFLKVPRTY----QVLIVGYE--KLLSI 427
L + N P E + + S KV + VL++GYE +LL++
Sbjct: 248 ---ALPADNKPEEVQPRFFKVHILNDEHKTMASRAKVMADWVSEGGVLLMGYEMYRLLTL 304
Query: 428 K-------------------------DELQNEKRNL---------DLVICDEGHRLKNKD 453
K D Q +R D+VICDEGHR+KN
Sbjct: 305 KKSFATGRPKKTKKRSHPVIIDLDEEDRQQEFRREFEKALCRPGPDVVICDEGHRIKNCQ 364
Query: 454 SKILKVLQSLDIEKKIVLSGTPIQNDLEEFYTIIDFINPGILGSFGRFKREYILPIARSR 513
+ + L+++ +++VL+G P+QN+L E++ ++DF+ P LG+ F + PI +
Sbjct: 365 ASTSQALKNIRSRRRVVLTGYPLQNNLIEYWCMVDFVRPDFLGTRQEFSNMFERPILNGQ 424
Query: 514 DVNAKQNQTLVEQGLLRSDQLIEITKRFILRRTNEILQQYLPPRTDLIIFCKPTAEQVEA 573
+++ + + RS L + + F+ RR + +L+ +LP + + +I + + Q +
Sbjct: 425 CIDSTPQDVRLMR--YRSHVLHSLLEGFVQRRGHTVLKIHLPAKEENVILVRLSKIQRDL 482
Query: 574 FHKIL 578
+ + +
Sbjct: 483 YTQFM 487
Score = 108 bits (269), Expect = 5e-23
Identities = 65/168 (38%), Positives = 98/168 (57%), Gaps = 22/168 (13%)
Query: 639 ILLSLLHELKTKTDEKVVVISNYTQTLDIIEGHCS---------SEGYTSA--------- 680
+LL L E K +K++V S TL +IE +EG +
Sbjct: 616 VLLFHLIEESVKLGDKILVFSQSLSTLALIEEFLGKREVPCPPGTEGQGAQKWVRNISYF 675
Query: 681 RLDGSTATKTRDQIVTSFNNDPS---IFVFLLSAKSGGVGLNLIGASRLVLFDNDWNPSI 737
RLDGST R++++ FN DPS ++FLLS ++G +G+NLIGA+R+V+FD WNP
Sbjct: 676 RLDGSTPAFERERLINQFN-DPSNLTTWLFLLSTRAGCLGVNLIGANRVVVFDASWNPCH 734
Query: 738 DLQAMSRIHRDGQRRPCFIYRLVTTGCIDEKILQRQLMKIALSKKFLD 785
D QA+ R++R GQ++PC+IYRLV +++KI RQ+ K +S + +D
Sbjct: 735 DAQAVCRVYRYGQKKPCYIYRLVADYTLEKKIYDRQISKQGMSDRVVD 782
>At4g31900 [R] KOG0383 Predicted helicase
Length = 1067
Score = 116 bits (291), Expect = 1e-25
Identities = 63/237 (26%), Positives = 125/237 (52%), Gaps = 5/237 (2%)
Query: 544 RRTNEILQQYLPPRTDLIIFCKPTAEQVEAFHKILTEGQLNFSNMTFNSSLGLITLFKKI 603
R ++L+ +PP+ +LI+ +++Q E + ++T + ++ +++
Sbjct: 326 RLKKDVLKDKVPPKKELILRVDMSSQQKEVYKAVITNNYQVLTKKRDAKISNVLMKLRQV 385
Query: 604 CNSTRLIKTDPYYEERLSQVQXXXXXXXXXXXXLRILLSLLHELKTKTDEKVVVISNYTQ 663
C+ L+ P +E R L++L ++ +LK + +V++ + +
Sbjct: 386 CSHPYLL---PDFEPRFEDANEAFTKLLEASGKLQLLDKMMVKLKEQ-GHRVLIYTQFQH 441
Query: 664 TLDIIEGHCSSEGYTSARLDGSTATKTRDQIVTSFNNDPSI-FVFLLSAKSGGVGLNLIG 722
TL ++E + + + + R+DG + R + FN + S F FLLS ++GG+G+NL
Sbjct: 442 TLYLLEDYFTFKNWNYERIDGKISGPERQVRIDRFNAENSNRFCFLLSTRAGGIGINLAT 501
Query: 723 ASRLVLFDNDWNPSIDLQAMSRIHRDGQRRPCFIYRLVTTGCIDEKILQRQLMKIAL 779
A ++++D+DWNP DLQAM+R+HR GQ IYRL+ G ++E++++ K+ L
Sbjct: 502 ADTVIIYDSDWNPHADLQAMARVHRLGQTNKVMIYRLIHKGTVEERMMEITKNKMLL 558
>CE11083 [KL] KOG4439 RNA polymerase II transcription termination factor
TTF2/lodestar DEAD-box superfamily
Length = 1091
Score = 116 bits (290), Expect = 2e-25
Identities = 63/159 (39%), Positives = 93/159 (57%), Gaps = 4/159 (2%)
Query: 653 EKVVVISNYTQTLDIIEGHCSSEGYTSARLDGSTATKTRDQIVTSFNNDPS-IFVFLLSA 711
EKVV++S +T L++IE H S G+ + G K R + V SFN + V LLS
Sbjct: 934 EKVVIVSQWTSVLNLIEIHIKSSGFKYTSITGQVLVKDRQERVDSFNREKGGARVMLLSL 993
Query: 712 KSGGVGLNLIGASRLVLFDNDWNPSIDLQAMSRIHRDGQRRPCFIYRLVTTGCIDEKILQ 771
+GGVGLNL G + LV+ D WNP+++ QA RI+R GQ++ FI+RLVT G I+++++
Sbjct: 994 AAGGVGLNLTGGNHLVMVDLHWNPALEQQAFDRIYRMGQKKDVFIHRLVTKGTIEQRVVM 1053
Query: 772 RQLMKIALSKKFLDSATDQSKNDDDLFQQEELKDLFTIN 810
Q K+AL+ LD + N ++K LF +N
Sbjct: 1054 LQKDKVALASSVLDGNATRKMNK---LTTADIKMLFGLN 1089
>YGL150c [L] KOG0388 SNF2 family DNA-dependent ATPase
Length = 1489
Score = 115 bits (287), Expect = 4e-25
Identities = 61/157 (38%), Positives = 96/157 (60%), Gaps = 2/157 (1%)
Query: 637 LRILLSLLHELKTKTDEKVVVISNYTQTLDIIEGHCSSEGYTSARLDGSTATKTRDQIVT 696
LR L LL +LK++ +V++ T+ +D++E + + Y RLDGS+ + R +V
Sbjct: 1301 LRKLDELLVKLKSE-GHRVLIYFQMTKMMDLMEEYLTYRQYNHIRLDGSSKLEDRRDLVH 1359
Query: 697 SFNNDPSIFVFLLSAKSGGVGLNLIGASRLVLFDNDWNPSIDLQAMSRIHRDGQRRPCFI 756
+ +P IFVFLLS ++GG+G+NL A ++ +D+DWNP+ID QAM R HR GQ R +
Sbjct: 1360 DWQTNPEIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTIDSQAMDRAHRLGQTRQVTV 1419
Query: 757 YRLVTTGCIDEKILQRQLMKIALSKKFLDSATDQSKN 793
YRL+ G I+E++ R K + + ++ T Q KN
Sbjct: 1420 YRLLVRGTIEERMRDRAKQKEQVQQVVMEGKT-QEKN 1455
Score = 96.3 bits (238), Expect = 2e-19
Identities = 88/372 (23%), Positives = 155/372 (41%), Gaps = 59/372 (15%)
Query: 259 NKTENHKVSVIVDPLLSKTLRPHQREGVKFLYDCVMNMVHTKGDESMILERDDDIKGCLL 318
N T ++++ +L+ TL+ +Q +G+ +L + D I G +L
Sbjct: 687 NPTSLGEITIEQPKILACTLKEYQLKGLNWLANLY----------------DQGING-IL 729
Query: 319 ADEMGLGKXXXXXXXXXXXXKQTPYPTIINQRGVTLAGEISKVLIVCPVTLIGNWKKEFK 378
ADEMGLGK + N G L+V P + + NW E
Sbjct: 730 ADEMGLGKTVQSISVLAHLAENH------NIWG--------PFLVVTPASTLHNWVNEIS 775
Query: 379 KWLPMNRIGVLTLHSRNSPTEDKAQVRSFLKVPRT--YQVLIVGYEKLLSIKDELQNEKR 436
K+LP +I ++ + K R L+ + + V++ Y+ +++ + LQ K
Sbjct: 776 KFLPQFKILPYWGNANDRKVLRKFWDRKNLRYNKNAPFHVMVTSYQMVVTDANYLQ--KM 833
Query: 437 NLDLVICDEGHRLKNKDSKILKVLQSLDIEKKIVLSGTPIQNDLEEFYTIIDFINPGILG 496
+I DE +K+ S K L S +++L+GTPIQN ++E + ++ FI P +
Sbjct: 834 KWQYMILDEAQAIKSSQSSRWKNLLSFHCRNRLLLTGTPIQNSMQELWALLHFIMPSLFD 893
Query: 497 SFGRFKREYILPIARSRDVNAKQNQTLVEQGLLRSDQLIEITKRFILRRTNEILQQYLPP 556
S F + I + N K NQ + +L I K F+LRR + +Q L
Sbjct: 894 SHDEFNEWFSKDIESHAEANTKLNQQQLR-------RLHMILKPFMLRRVKKNVQSELGD 946
Query: 557 RTDLIIFCKPTAEQVEAFHKILTEGQLNF------------SNMTFNSS-----LGLITL 599
+ ++ + C T Q + + + ++ N+ SN NS + +
Sbjct: 947 KIEIDVLCDLTQRQAKLYQVLKSQISTNYDAIENAATNDSTSNSASNSGSDQNLINAVMQ 1006
Query: 600 FKKICNSTRLIK 611
F+K+CN L +
Sbjct: 1007 FRKVCNHPDLFE 1018
>YDR334w [R] KOG0391 SNF2 family DNA-dependent ATPase
Length = 1514
Score = 112 bits (279), Expect = 3e-24
Identities = 63/171 (36%), Positives = 97/171 (55%), Gaps = 7/171 (4%)
Query: 637 LRILLSLLHELKTKTDEKVVVISNYTQTLDIIEGHCSSEGYTSARLDGSTATKTRDQIVT 696
L+ L LL +LK + ++ + T+ LD++E + GY RLDG+T + R +
Sbjct: 1248 LQKLAILLQQLKDN-GHRALIFTQMTKVLDVLEQFLNYHGYLYMRLDGATKIEDRQILTE 1306
Query: 697 SFNNDPSIFVFLLSAKSGGVGLNLIGASRLVLFDNDWNPSIDLQAMSRIHRDGQRRPCFI 756
FN D I VF+LS++SGG+G+NL GA ++ +D+DWNP++D Q R HR GQ R I
Sbjct: 1307 RFNTDSRITVFILSSRSGGLGINLTGADTVIFYDSDWNPAMDKQCQDRCHRIGQTRDVHI 1366
Query: 757 YRLVTTGCIDEKILQRQLMKIALSKKFLDSATDQSKN-DDDLFQQEELKDL 806
YR V+ I+ IL++ A K+ LD+ Q + D F + ++DL
Sbjct: 1367 YRFVSEHTIESNILKK-----ANQKRQLDNVVIQEGDFTTDYFSKLSVRDL 1412
Score = 103 bits (257), Expect = 1e-21
Identities = 85/369 (23%), Positives = 167/369 (45%), Gaps = 54/369 (14%)
Query: 260 KTENHKVSVI---VDPLLSKTLRPHQREGVKFLYDCVMNMVHTKGDESMILERDDDIKGC 316
K + ++SV+ V LL LR +Q++G+ +L N HT G
Sbjct: 675 KVQEEQLSVVDVPVPSLLRGNLRTYQKQGLNWLASLYNN--HTNG--------------- 717
Query: 317 LLADEMGLGKXXXXXXXXXXXXKQTPYPTIINQRGVTLAGEISKVLIVCPVTLIGNWKKE 376
+LADEMGLGK + LIV P +++ NW+ E
Sbjct: 718 ILADEMGLGKTIQTISLLAYLACEKE--------------NWGPHLIVVPTSVLLNWEME 763
Query: 377 FKKWLPMNRIGVLTLHSRNSPTEDKAQVRSFLKVPRTYQVLIVGYEKLLSIKDELQNEKR 436
FK++ P G L SP + K + + + K P + V IV Y+ L ++D+ +++
Sbjct: 764 FKRFAP----GFKVLTYYGSPQQRKEKRKGWNK-PDAFHVCIVSYQ--LVVQDQHSFKRK 816
Query: 437 NLDLVICDEGHRLKNKDSKILKVLQSLDIEKKIVLSGTPIQNDLEEFYTIIDFINPGIL- 495
++ DE H +KN S + L + + +++++L+GTP+QN+L E ++++ F+ P +
Sbjct: 817 RWQYMVLDEAHNIKNFRSTRWQALLNFNTQRRLLLTGTPLQNNLAELWSLLYFLMPQTVI 876
Query: 496 --------GSFGRFKREYILPIARSRDVNAKQNQTLVEQGLLRSDQLIEITKRFILRRTN 547
F++ + P+ + + QN ++ +L ++ + ++LRR
Sbjct: 877 DGKKVSGFADLDAFQQWFGRPV--DKIIETGQNFGQDKETKKTVAKLHQVLRPYLLRRLK 934
Query: 548 EILQQYLPPRTDLIIFCKPTAEQVEAFHKILTEGQ--LNFSNMTFNSSLGLITLFKKICN 605
+++ +P + + I++CK + Q + ++ Q ++ F S + + +K+CN
Sbjct: 935 ADVEKQMPAKYEHIVYCKLSKRQRFLYDDFMSRAQTKATLASGNFMSIVNCLMQLRKVCN 994
Query: 606 STRLIKTDP 614
L + P
Sbjct: 995 HPNLFEVRP 1003
>ECU09g1890 [L] KOG0388 SNF2 family DNA-dependent ATPase
Length = 883
Score = 110 bits (274), Expect = 1e-23
Identities = 57/157 (36%), Positives = 92/157 (58%), Gaps = 2/157 (1%)
Query: 637 LRILLSLLHELKTKTDEKVVVISNYTQTLDIIEGHCSSEGYTSARLDGSTATKTRDQIVT 696
L +L LL +LK + ++++ T+ +D+IE + +GYT RLDGS R +++
Sbjct: 728 LVVLDELLPKLKAE-GHRLLMYFQMTRMIDLIEDYLVRKGYTYLRLDGSLKASARAEVIR 786
Query: 697 SFNNDPSIFVFLLSAKSGGVGLNLIGASRLVLFDNDWNPSIDLQAMSRIHRDGQRRPCFI 756
+ F+FLLS ++GG+G+NL A +V +D+DWNP+ D QAM R HR GQ R +
Sbjct: 787 DWQASDK-FIFLLSTRAGGLGINLTAADTVVFYDSDWNPTADQQAMDRAHRLGQTRDVTV 845
Query: 757 YRLVTTGCIDEKILQRQLMKIALSKKFLDSATDQSKN 793
YRL+T G ++EK+L+ K + K + + +N
Sbjct: 846 YRLITRGTVEEKVLESANRKDEIQKMVIHGNIFEGEN 882
Score = 92.4 bits (228), Expect = 3e-18
Identities = 83/320 (25%), Positives = 141/320 (43%), Gaps = 39/320 (12%)
Query: 292 CVMNMVHTKGDESMILERDDDIKGCLLADEMGLGKXXXXXXXXXXXXKQTPYPTIINQRG 351
C + +G ++ D I G +LAD+MGLGK + P
Sbjct: 273 CTLKEYQLRGLNWLVSLYDKGING-ILADDMGLGKTVQSISLLAHLYETEEVP------- 324
Query: 352 VTLAGEISKVLIVCPVTLIGNWKKEFKKWLPMNRIGVLTLHSRNSPTEDKAQVRSFLKVP 411
L+V + + NW +EF ++LP R+ SP+E K + F
Sbjct: 325 -------GPFLVVTISSTLDNWAQEFARFLPSFRV----CRFSGSPSERKELKKRF---- 369
Query: 412 RTYQVLIVGYEKLLSIKDELQNEKRNLDLVICDEGHRLKNKDSKILKVLQSLDIEKKIVL 471
+ V+I Y+ +S DE +K +I DE +K+ S+ K L S +++L
Sbjct: 370 KNSDVVITTYQTAVS--DEKMLKKIKWQYMILDEAQAIKSSMSRRWKTLLSFKARNRLLL 427
Query: 472 SGTPIQNDLEEFYTIIDFINPGILGSFGRFKREYILPIARSRDVNAKQNQTLVEQGLLRS 531
+GTPIQN ++E + ++ FI P + S F + ++ + +A +T+ E+ L R
Sbjct: 428 TGTPIQNSMQELWALLHFIMPTLFDSLNEFSDWF----SKEIETSAIMKKTVDEKSLQR- 482
Query: 532 DQLIEITKRFILRRTNEILQQYLPPRTDLIIFCKPTAEQVEAFHKILTEGQLNFSNMTFN 591
L I K F+LRR + L +T + ++C + Q + +K +T + S+M
Sbjct: 483 --LHAILKPFMLRRHKSDVIHELGQKTQIDLYCDLSYRQ-KVLYKEITR---SCSSMEME 536
Query: 592 SSLGLITLFKKICNSTRLIK 611
+ L+ KK+CN L K
Sbjct: 537 N---LLMQLKKVCNHPDLFK 553
>SPAC17A2.12 [KL] KOG1001 Helicase-like transcription factor HLTF/DNA helicase
RAD5 DEAD-box superfamily
Length = 897
Score = 109 bits (272), Expect = 2e-23
Identities = 62/169 (36%), Positives = 98/169 (57%), Gaps = 3/169 (1%)
Query: 642 SLLHELKTKTDEKVVVISNYTQTLDIIEGHCSSEGYTSARLDGSTATKTRDQIVTSFNND 701
++L + +K +EK++V S ++Q L ++ E R DG+ + R + + SFNND
Sbjct: 731 TILDIIGSKRNEKILVYSQFSQYLCLVSHMLKLENIRHVRYDGTMSANQRQKSLHSFNND 790
Query: 702 PSIFVFLLSAKSGGVGLNLIGASRLVLFDNDWNPSIDLQAMSRIHRDGQRRPCFIYRLVT 761
+ V L+S K+G VGLNL A+ ++L + +NPSI+ QA+ R+HR GQ++P +YR +T
Sbjct: 791 KDVLVMLVSLKAGSVGLNLTIANHVILQEPFYNPSIEDQAIDRVHRLGQQKPVTVYRFIT 850
Query: 762 TGCIDEKILQRQLMKIALSKKFLDSATDQSKNDDDLFQQEELKDLFTIN 810
I+E+I+ Q K L K+ LDS N +EEL LF +N
Sbjct: 851 KDTIEERIVSVQRKKRQLVKEALDS---NENNPLSRLDKEELLYLFGLN 896
Score = 67.4 bits (163), Expect = 1e-10
Identities = 68/285 (23%), Positives = 112/285 (38%), Gaps = 42/285 (14%)
Query: 315 GCLLADEMGLGKXXXXXXXXXXXXKQTPYPTIINQRGVTLAGEISKVLIVCPVTLIGNWK 374
G ++AD+MGLGK Q P LIV V L+ W
Sbjct: 271 GGVMADDMGLGKTIQTIALLLTQKSQDPLR--------------KTNLIVVSVALLHQWA 316
Query: 375 KEFK-KWLPMNRIGVLTLHSRNSPTEDKAQVRSFLKVPRTYQVLIVGYEKLLSIKDELQN 433
+E K P ++ V H D ++ + V TY +L YE + D N
Sbjct: 317 EELSTKVHPSKKLSVYIHHGSTKKNLDSYELSQYDVVLTTYSML--AYE--MKQNDAFNN 372
Query: 434 E--------------KRNLDLVICDEGHRLKNKDSKILKVLQSLDIEKKIVLSGTPIQND 479
+ + ++ DE H ++N+D+ K LD + + LSGTPIQN
Sbjct: 373 NNPATATPPPACSLLETSWYRIVLDEAHTIRNRDTLAAKCCVKLDAKYRWCLSGTPIQNH 432
Query: 480 LEEFYTIIDFINPGILGSFGRFKREYILPIARSRDVNAKQNQTLVEQGLLRSDQLIEIT- 538
++EFY+++ F+ + F ++ P+ R +VE L R L+ T
Sbjct: 433 IDEFYSLLKFLRIKPYCVWSLFAKDISRPLKSYR-------ADIVEAALKRLRILLASTV 485
Query: 539 -KRFILRRTNEILQQYLPPRTDLIIFCKPTAEQVEAFHKILTEGQ 582
+R R N + LPP+T + E+ +++ ++ Q
Sbjct: 486 FRRTKETRVNNLPIVNLPPKTIRTVSVNLLPEERALYNEQMSSAQ 530
>Hs19923174 [KL] KOG4439 RNA polymerase II transcription termination factor
TTF2/lodestar DEAD-box superfamily
Length = 1162
Score = 108 bits (269), Expect = 5e-23
Identities = 61/150 (40%), Positives = 86/150 (56%), Gaps = 4/150 (2%)
Query: 642 SLLHEL----KTKTDEKVVVISNYTQTLDIIEGHCSSEGYTSARLDGSTATKTRDQIVTS 697
SLL EL + +K V++S +T L ++ H G T A +DGS K R +V +
Sbjct: 995 SLLAELEAIQRNSASQKSVIVSQWTNMLKVVALHLKKHGLTYATIDGSVNPKQRMDLVEA 1054
Query: 698 FNNDPSIFVFLLSAKSGGVGLNLIGASRLVLFDNDWNPSIDLQAMSRIHRDGQRRPCFIY 757
FN+ V L+S +GGVGLNL G + L L D WNPS++ QA RI+R GQ++ I+
Sbjct: 1055 FNHSRGPQVMLISLLAGGVGLNLTGGNHLFLLDMHWNPSLEDQACDRIYRVGQQKDVVIH 1114
Query: 758 RLVTTGCIDEKILQRQLMKIALSKKFLDSA 787
R V G ++EKILQ Q K L+K+ L +
Sbjct: 1115 RFVCEGTVEEKILQLQEKKKDLAKQVLSGS 1144
Score = 69.3 bits (168), Expect = 3e-11
Identities = 77/333 (23%), Positives = 137/333 (41%), Gaps = 58/333 (17%)
Query: 296 MVHTKGDESMILERDDDI-KGCLLADEMGLGKXXXXXXXXXXXXKQTPYPTIINQRGVTL 354
++H K + +L R+ +G +LAD+MGLGK Q +T
Sbjct: 571 LLHQKQALAWLLWRESQKPQGGILADDMGLGKTLTMIALILTQKNQEKKEEKEKSTALTW 630
Query: 355 AGEISK-------VLIVCPVTLIGNWKKEFKKWLPMNRIGVLTLHSRNSPTEDKAQVRSF 407
+ LI+CP +LI +WK E +K + N++ V H N + +A+V S
Sbjct: 631 LSKDDSCDFTSHGTLIICPASLIHHWKNEVEKRVNSNKLRVYLYHGPNR--DSRARVLS- 687
Query: 408 LKVPRTYQVLIVGY----EKLLSIKDELQNEKRNLDL--------------VICDEGHRL 449
TY ++I Y +++ + K E + NL++ +I DE H +
Sbjct: 688 -----TYDIVITTYSLVAKEIPTNKQEAEIPGANLNVEGTSTPLLRIAWARIILDEAHNV 742
Query: 450 KNKDSKILKVLQSLDIEKKIVLSGTPIQNDLEEFYTIIDFINPGILGSFGRFKREYILPI 509
KN + + L + ++GTPIQN+L + Y+++ F+ F ++ +
Sbjct: 743 KNPRVQTSIAVCKLQACARWAVTGTPIQNNLLDMYSLLKFLRCSPFDEFNLWRSQV---- 798
Query: 510 ARSRDVNAKQNQTLVEQGLLRSDQLIEITKRFILRRTNEILQQYLPPRTDLIIFCKPTAE 569
D +K+ ++L +TK +LRRT + L P L+I
Sbjct: 799 ----DNGSKKG----------GERLSILTKSLLLRRTKDQLDSTGRP---LVIL---PQR 838
Query: 570 QVEAFHKILTEGQLNFSNMTFNSSLGLITLFKK 602
+ + H L+E + N+ F S + + K
Sbjct: 839 KFQLHHLKLSEDEETVYNVFFARSRSALQSYLK 871
>7298963 [KL] KOG4439 RNA polymerase II transcription termination factor
TTF2/lodestar DEAD-box superfamily
Length = 1061
Score = 107 bits (266), Expect = 1e-22
Identities = 61/158 (38%), Positives = 90/158 (56%), Gaps = 6/158 (3%)
Query: 651 TDEKVVVISNYTQTLDIIEGHCSSEGYTSARLDGSTATKTRDQIVTSFNN-DPSIFVFLL 709
+D+K +V+S +T LDI+ H S +G + L+G+ K R IV FN+ + V LL
Sbjct: 907 SDDKAIVVSQWTSVLDILRDHLSKDGVATLSLNGTIPVKNRQDIVNEFNDRNNQKRVLLL 966
Query: 710 SAKSGGVGLNLIGASRLVLFDNDWNPSIDLQAMSRIHRDGQRRPCFIYRLVTTGCIDEKI 769
S +GGVGLNLIGA+ L+L D WNP ++ QA RI+R GQ++ IY+ + ++++I
Sbjct: 967 SLTAGGVGLNLIGANHLLLLDLHWNPQLEAQAQDRIYRVGQKKNVIIYKFMCVDTVEQRI 1026
Query: 770 LQRQLMKIALSKKFLDSATDQSKNDDDLFQQEELKDLF 807
Q K+ L+ L A SK D +LK LF
Sbjct: 1027 KGLQDKKLDLADGVLTGAKVSSKLTID-----DLKGLF 1059
Score = 56.2 bits (134), Expect = 2e-07
Identities = 47/198 (23%), Positives = 84/198 (41%), Gaps = 28/198 (14%)
Query: 314 KGCLLADEMGLGKXXXXXXXXXX------------XXKQTPYPTIINQRGVTLAGEISK- 360
+G +LAD+MGLGK + N++ ++ G SK
Sbjct: 459 RGGILADDMGLGKTLTMISSVLACKNGQEMSEGKDESSDSDSEDDKNKKRKSVTGWKSKG 518
Query: 361 --------VLIVCPVTLIGNWKKEFKKWLPMNRIGVLTLHSRNSPTEDKAQVRSFLKVPR 412
L+VCP +L+ W+ E + + ++ V H N T+ K +R + V
Sbjct: 519 RKDTRRGGTLVVCPASLLRQWESEVESKVSRQKLTVCVHHGNNRETKGK-YLRDYDIVVT 577
Query: 413 TYQVLIVGYEKLLSIKDELQNEKRNLDLVICDEGHRLKNKDSKILKVLQSLDIEKKIVLS 472
TYQ++ ++ L ++ +I DE H ++N S+ + L + + L+
Sbjct: 578 TYQIVAREHKSLSAVFGVKWRR------IILDEAHVVRNHKSQSSLAVCDLRGKYRWALT 631
Query: 473 GTPIQNDLEEFYTIIDFI 490
GTPIQN + Y ++ F+
Sbjct: 632 GTPIQNKELDVYALLKFL 649
>ECU06g0820 [B] KOG1000 Chromatin remodeling protein HARP/SMARCAL1 DEAD-box
superfamily
Length = 556
Score = 105 bits (262), Expect = 3e-22
Identities = 125/546 (22%), Positives = 210/546 (37%), Gaps = 112/546 (20%)
Query: 269 IVDPLLSKTLRPHQREGVKFLYDCVMNMVHTKGDESMILERDDDIKGCLLADEMGLGKXX 328
++ P+ S L P QREGV+ + M+ +AD+MGLGK
Sbjct: 116 LIGPIYSMLL-PFQREGVEHALNRGGRMI--------------------VADDMGLGKTI 154
Query: 329 XXXXXXXXXXKQTPYPTIINQRGVTLAGEISKVLIVCPVTLIGNWKKEFKKWLPMNRIGV 388
+ P ++I+ P +L+ +W +++L M + +
Sbjct: 155 QALAVAYYYRAEWP------------------LVIIAPASLLEDWADACRRFLGMEAMVM 196
Query: 389 LTLHSRNSPTEDKAQVRSFLKVPRTYQVLIVGYEKLLSIKDELQNEKRNLDLVICDEGHR 448
ED Q ++ +V YE S + L +VI DE H
Sbjct: 197 RR-------KEDFGQ-----------EIGVVSYEVASSHANVLAC---GAGVVIADECHY 235
Query: 449 LKNKDSKILKVLQSL--DIEKKIVLSGTPIQNDLEEFYTIIDFINPGILGSFGRFKREYI 506
LK+ +K K + L + + ++LSGTP + E Y II ++ I F + Y
Sbjct: 236 LKSLQTKRTKAIVPLLQKVSRALLLSGTPAVSRPLELYPIISAVDRTIFPRFAEYGARYC 295
Query: 507 LPIARSRDVNAKQNQTLVEQGLLRSDQLIEITKRFIL-RRTNEILQQYLPPRTDLIIFCK 565
K Q +G +++L + ++F++ RRT + + LPP+ + +
Sbjct: 296 N--------GRKVGQWYDYKGCSNAEELHYVLRKFLMIRRTKDEVLGQLPPKFRRQVVLE 347
Query: 566 PTAEQVEAFHKILTEGQLNFSNMTFNSSLGLITLFKKICNSTRLIKTDPYYEERLSQVQX 625
T Q + ++ E M + ++GL K DP + + V+
Sbjct: 348 CTGRQDDPRKDLVGESVDTNVVMQYREAVGL--------------KVDPVKQYLATMVEK 393
Query: 626 XXXXXXXXXXXLRILLSLLHELKTKTDEKVVVISNYTQTLDIIEGHCSSEGYTSARLDGS 685
K VV ++T+ ++ +EG + R+DGS
Sbjct: 394 GM--------------------------KFVVFCHHTEMMESLEGFFAERNVPMIRIDGS 427
Query: 686 TATKTRDQIVTSFNNDPSIFVFLLSAKSGGVGLNLIGASRLVLFDNDWNPSIDLQAMSRI 745
+ +R +V F + + V LLS + GL L +V + WNP + LQA RI
Sbjct: 428 VPSTSRHLLVKKFQENEEVMVALLSITACSTGLTLTAGRAVVFAELYWNPGVLLQAEDRI 487
Query: 746 HRDGQRRPCFIYRLVTTGCIDEKILQRQLMKIALSKKFLDSATDQSKNDDDLFQQEELKD 805
HR GQ+ I LV G IDE + + L K+ + + L ++Q KN Q K
Sbjct: 488 HRIGQKSSVDIIYLVAKGTIDEYVWPKLLSKLNVLES-LGVGSNQLKNVGVSSQAAGQKT 546
Query: 806 LFTINL 811
L N+
Sbjct: 547 LCQFNI 552
>CE14110 [KL] KOG4439 RNA polymerase II transcription termination factor
TTF2/lodestar DEAD-box superfamily
Length = 1026
Score = 104 bits (260), Expect = 6e-22
Identities = 61/185 (32%), Positives = 103/185 (54%), Gaps = 13/185 (7%)
Query: 641 LSLLHELKTKTDEKVVVISNYTQTLDIIEGHCSSEGYTSARLDGSTATKTRDQIVTSFNN 700
L ++ E+ K EKVV++S +T L+++E H + G+ + G K R + V SFN
Sbjct: 846 LEVVREILEKK-EKVVIVSQWTSVLNLVEKHIQAGGHNYTSITGQVLVKDRQERVDSFNQ 904
Query: 701 DPS-IFVFLLSAKSGGVGLNLIGASRLVLFDNDWNPSIDLQAMSRIHRDGQRRPCFIY-- 757
+ V LLS +GGVGLNLIG + L++ D WNP+++ QA RI+R GQ++ FI+
Sbjct: 905 EKGGAQVMLLSLTAGGVGLNLIGGNHLIMVDLHWNPALEQQACDRIYRMGQKKEVFIHRL 964
Query: 758 ------RLVTTGCIDEKILQRQLMKIALSKKFLDSATDQSKNDDDLFQQEELKDLFTINL 811
RL+ G I+++++ Q K+AL+ L+ + N +++ LF ++
Sbjct: 965 NISKFCRLIVKGTIEQRVMDLQEKKLALAASVLEGTATRKLNK---LTTADIRMLFGLDG 1021
Query: 812 STLSN 816
S+ +N
Sbjct: 1022 SSNAN 1026
Score = 61.2 bits (147), Expect = 7e-09
Identities = 70/305 (22%), Positives = 119/305 (38%), Gaps = 68/305 (22%)
Query: 278 LRPHQREGVKFLYDCVMNMVHTKGDESMILERDDDIKGCLLADEMGLGKXXXXXXX---- 333
L PHQ+ G+++L + G +LAD+MGLGK
Sbjct: 389 LMPHQKAGLRWL----------------VWREGQPHSGGILADDMGLGKTLSMLSLIVHQ 432
Query: 334 -XXXXXKQTPYPTIINQRGVTLAGE-----ISKVLIVCPVTLIGNWKKEFKKWLPMNRIG 387
++ ++ +A E + LI+ P +LI W+ E + L + +
Sbjct: 433 KAARRARKESGDNAADKEKRRVAKEEGLYPSNGTLIIAPASLIHQWEAEINRRLESDLLS 492
Query: 388 VLTLHSRNSPTE-DKAQVRSFLKVPRTYQVLI--------VGYEKLLSIKDELQNE---- 434
V H + + ++ + V TY + G +K DE +NE
Sbjct: 493 VFMFHGTKKQRQIEPKELARYDVVITTYTLAANELMEKKAAGSKKEEDSDDESENEENPR 552
Query: 435 ----KRNLDL-------VICDEGHRLKNKDSKILKVLQSLDIEKKIVLSGTPIQNDLEEF 483
K + L VI DE H +KN+ S+ K + L + LSGTPI N+L +
Sbjct: 553 RPAGKNDSPLARVAWSRVILDEAHAIKNRLSQCSKAVCRLSSFSRWCLSGTPIHNNLWDL 612
Query: 484 YTIIDFINPGILGSFGRFKREYILPIARSRDVNAKQNQTLVEQGLLRSDQLIEITKRFIL 543
Y+++ F+ + G +F E I+P+ +D++ +TK +L
Sbjct: 613 YSLVRFLRIPLFGD-RKFWAESIMPMKTG-----------------MADRVNLLTKNLML 654
Query: 544 RRTNE 548
RRT +
Sbjct: 655 RRTKD 659
>SPCC1235.05c [B] KOG0389 SNF2 family DNA-dependent ATPase
Length = 1284
Score = 104 bits (259), Expect = 7e-22
Identities = 59/163 (36%), Positives = 92/163 (56%), Gaps = 1/163 (0%)
Query: 637 LRILLSLLHELKTKTDEKVVVISNYTQTLDIIEGHCSSEGYTSARLDGSTATKTRDQIVT 696
+R+L LL ++K + ++++ S +TQ LDI+E + + RLDGST + R I+
Sbjct: 926 IRVLKELLPKMKEE-GSRILLFSQFTQMLDILEQVLDTLKISYVRLDGSTQVEVRQDIID 984
Query: 697 SFNNDPSIFVFLLSAKSGGVGLNLIGASRLVLFDNDWNPSIDLQAMSRIHRDGQRRPCFI 756
F+ + + VFLLS K+GG G+NL A+ ++L+D +NP DLQA R HR GQ R +
Sbjct: 985 QFHKEEDVTVFLLSTKAGGFGINLACANVVILYDCSYNPFDDLQAEDRAHRVGQVREVTV 1044
Query: 757 YRLVTTGCIDEKILQRQLMKIALSKKFLDSATDQSKNDDDLFQ 799
RL+T I+E I + K+AL D+ + + L Q
Sbjct: 1045 IRLITDNTIEEYIQKLANTKLALDMSLSSDGKDREEIGERLVQ 1087
Score = 90.9 bits (224), Expect = 8e-18
Identities = 70/262 (26%), Positives = 128/262 (48%), Gaps = 27/262 (10%)
Query: 317 LLADEMGLGKXXXXXXXXXXXXKQTPYPTIINQRGVTLAGEISKVLIVCPVTLIGNWKKE 376
+LADEMGLGK +Q G L+V P + + NW +E
Sbjct: 572 ILADEMGLGKTCQVVAFFALLLEQ---------------GHHGPHLVVVPSSTLENWLRE 616
Query: 377 FKKWLPMNRIGVLTLHSRNSPTEDKAQVRSFLKVPRT-YQVLIVGYEKLLSIKDELQNEK 435
++ P R+ +++A +R ++ Y +L+ Y+ + K++ K
Sbjct: 617 LARFCPSLRV-----EPYYGSQQERANIREAIEENEIKYDILVTTYQLATNNKEDRSFLK 671
Query: 436 -RNLDLVICDEGHRLKNKDSKILKVLQSLDIEKKIVLSGTPIQNDLEEFYTIIDFINPGI 494
+N D+ + DEGH LKN+ S+ K L +L+ +++L+GTP+QN+L+E +++ FI P +
Sbjct: 672 HQNFDVCVYDEGHYLKNRMSERYKHLMNLNANFRLLLTGTPLQNNLKELVSLLAFILPNM 731
Query: 495 LGSFGRFKREYILPIARSRDVNAKQNQTLVEQGLLRSDQLIEITKRFILRRTNEILQQYL 554
S + I + D + +Q L +Q + R+ + +T + RR N++L L
Sbjct: 732 FDS-DMDDLDVIFKAKPTADADIEQ-ALLSKQRISRAKTM--MTPFVLRRRKNQVLND-L 786
Query: 555 PPRTDLIIFCKPTAEQVEAFHK 576
P +T +I CK + Q+E +++
Sbjct: 787 PKKTQIIEHCKLSENQLEIYNR 808
>At5g43530 [KL] KOG1001 Helicase-like transcription factor HLTF/DNA helicase
RAD5 DEAD-box superfamily
Length = 1277
Score = 104 bits (259), Expect = 7e-22
Identities = 62/169 (36%), Positives = 92/169 (53%), Gaps = 7/169 (4%)
Query: 640 LLSLLHELKTK-TDEKVVVISNYTQTLDIIEGHCSSEGYTSARLDGSTATKTRDQIVTSF 698
LL L ++K + EK +V S +T LD++E G+ R DG A K R++++ F
Sbjct: 1114 LLKCLEKIKKSGSGEKSIVFSQWTSFLDLLEIPLRRRGFEFLRFDGKLAQKGREKVLKEF 1173
Query: 699 NNDPSIFVFLLSAKSGGVGLNLIGASRLVLFDNDWNPSIDLQAMSRIHRDGQRRPCFIYR 758
N + L+S K+GGVGLNL AS + L D WNP+++ QA+ RIHR GQ+R F+ R
Sbjct: 1174 NETKQKTILLMSLKAGGVGLNLTAASSVFLMDPWWNPAVEEQAIMRIHRIGQKRTVFVRR 1233
Query: 759 LVTTGCIDEKILQRQLMKIALSKKFLDSATDQSKNDDDLFQQEELKDLF 807
+ ++E++ Q Q K + + TD+ L EELK LF
Sbjct: 1234 FIVKDTVEERMQQVQARK---QRMIAGALTDEEVRSARL---EELKMLF 1276
Score = 63.2 bits (152), Expect = 2e-09
Identities = 75/329 (22%), Positives = 134/329 (39%), Gaps = 53/329 (16%)
Query: 314 KGCLLADEMGLGKXXXXXXXXXXX-XKQTPYPTII----------NQRGVTLAGEISKV- 361
+G +LAD MGLGK + P + N++ + +A K
Sbjct: 681 RGGILADAMGLGKTVMTIALILARPGRGNPENEDVLVADVNADKRNRKEIHMALTTVKAK 740
Query: 362 ---LIVCPVTLIGNWKKEFKKWLPMNRIGVLTLHSRNSPTEDKAQVRSFLKVPRTYQVLI 418
LI+CP+ L+ WK E + + + VL + + T D + S V TY VL
Sbjct: 741 GGTLIICPMALLSQWKDELETHSKPDTVSVLVYYGGDR-THDAKAIASHDVVLTTYGVLT 799
Query: 419 VGYEKLLSIKDELQNEKRNLDL--VICDEGHRLKNKDSKILKVLQSLDIEKKIVLSGTPI 476
Y++ D + +D ++ DE H +K+ ++ K L + L+GTP+
Sbjct: 800 SAYKQ-----DMANSIFHRIDWYRIVLDEAHTIKSWKTQAAKATFELSSHCRWCLTGTPL 854
Query: 477 QNDLEEFYTIIDFINPGILGSFGRFKREYILPIARSRDVNAKQNQTLVEQGLLRSDQLIE 536
QN LE+ Y+++ F++ ++ + +K Q E G R +LI+
Sbjct: 855 QNKLEDLYSLLCFLHVEPWCNWAWW---------------SKLIQKPYENGDPRGLKLIK 899
Query: 537 -ITKRFILRRTNEI------LQQYLPPRTDLIIFCKPTAEQVEAFHKILTEGQLNFSNM- 588
I + +LRRT E L LPP +I C+ + + + + + ++ F
Sbjct: 900 AILRPLMLRRTKETRDKEGSLILELPPTDVQVIECEQSEAERDFYTALFKRSKVQFDQFV 959
Query: 589 -------TFNSSLGLITLFKKICNSTRLI 610
+ + L L+ ++ CN L+
Sbjct: 960 AQGKVLHNYANILELLLRLRQCCNHPFLV 988
>Hs21071060 [B] KOG1000 Chromatin remodeling protein HARP/SMARCAL1 DEAD-box
superfamily
Length = 954
Score = 101 bits (252), Expect = 5e-21
Identities = 132/552 (23%), Positives = 217/552 (38%), Gaps = 107/552 (19%)
Query: 270 VDPLLSKTLRPHQREGVKFLYDCVMNMVHTKGDESMILERDDDIKGCLLADEMGLGKXXX 329
VDP L L P QR GV F KG LLAD+MGLGK
Sbjct: 428 VDPKLVSNLMPFQRAGVNFAI--------AKGGR------------LLLADDMGLGKTIQ 467
Query: 330 XXXXXXXXXKQTPYPTIINQRGVTLAGEISKVLIVCPVTLIGNWKKEFKKWLPMNRIGVL 389
K+ P +L+V P ++ W++ F +WLP L
Sbjct: 468 AICIAAFYRKEWP------------------LLVVVPSSVRFTWEQAFLRWLPS-----L 504
Query: 390 TLHSRNSPTEDKAQVRSFLKVPRTYQVLIVGYEKLLSIKDELQNEKRNLDLVICDEGHRL 449
+ N K ++ + L + IV ++ L ++ +L K +VI DE H L
Sbjct: 505 SPDCINVVVTGKDRLTAGL-------INIVSFDLLSKLEKQL---KTPFKVVIIDESHFL 554
Query: 450 KN-KDSKILKVLQSLDIEKKIVL-SGTPIQNDLEEFYTIIDFINPGILGSFGRFKREYIL 507
KN + ++ + L + K+++L SGTP + E YT I + P F F Y
Sbjct: 555 KNSRTARCRAAMPVLKVAKRVILLSGTPAMSRPAELYTQIIAVKPTFFPQFHAFGLRYCD 614
Query: 508 PIARSRDVNAKQNQTLVEQGLLRSDQLIEITKRFILRRTNEILQQYLPPRTDLIIFCKP- 566
+ + L E LL + ++ LRR + LP + I+ P
Sbjct: 615 AKRMPWGWDYSGSSNLGELKLLLEEAVM-------LRRLKSDVLSQLPAKQRKIVVIAPG 667
Query: 567 -----TAEQVEAFHKILTEGQLNFSNMTFNSSLGLITLFKKICNSTRLIKTDPYYEERLS 621
T ++A K +T + T + LF N T E ++
Sbjct: 668 RINARTRAALDAAAKEMTT-----KDKTKQQQKDALILF---FNRTA--------EAKIP 711
Query: 622 QVQXXXXXXXXXXXXLRILLSLLHELKTKTDEKVVVISNYTQTLDIIEGHCSSEGYTSAR 681
V + +L LL + EK +V +++ LD I + R
Sbjct: 712 SV-------------IEYILDLLESGR----EKFLVFAHHKVVLDAITQELERKHVQHIR 754
Query: 682 LDGSTATKTRDQIVTSFNNDPSIFVFLLSAKSGGVGLNLIGASRLVLFDNDWNPSIDLQA 741
+DGST++ R+ + F V +LS + +GL A +V + WNP + +QA
Sbjct: 755 IDGSTSSAEREDLCQQFQLSERHAVAVLSITAANMGLTFSSADLVVFAELFWNPGVLIQA 814
Query: 742 MSRIHRDGQRRPCFIYRLVTTGCIDE---KILQRQLMKIALSKKFLDSATDQSKNDDDLF 798
R+HR GQ I+ LV G D+ ++Q ++ +A + + ++ +++ D L+
Sbjct: 815 EDRVHRIGQTSSVGIHYLVAKGTADDYLWPLIQEKIKVLAEAGLSETNFSEMTESTDYLY 874
Query: 799 ---QQEELKDLF 807
+Q+++ DLF
Sbjct: 875 KDPKQQKIYDLF 886
>7296236 [K] KOG0384 Chromodomain-helicase DNA-binding protein
Length = 2237
Score = 101 bits (252), Expect = 5e-21
Identities = 66/234 (28%), Positives = 115/234 (48%), Gaps = 39/234 (16%)
Query: 277 TLRPHQREGVKFLYDCVMNMVHTKGDESMILERDDDIKGCLLADEMGLGKXXXXXXXXXX 336
+LRP+Q EG+ +L N C+LADEMGLGK
Sbjct: 2021 SLRPYQLEGLNWLKFSWYNT-----------------HNCILADEMGLGKTI-------- 2055
Query: 337 XXKQTPYPTIINQRGVTLAGEISKVLIVCPVTLIGNWKKEFKKWLPMNRIGVLTLHSRNS 396
+ + + + G+ L++ P++ I NW++EF+ W MN + +
Sbjct: 2056 --QSLTFVHSVYEYGIR-----GPFLVIAPLSTIPNWQREFEGWTDMNVVVYHGSVTSKQ 2108
Query: 397 PTED-----KAQVRSFLKVPRTYQVLIVGYEKLLSIKDELQNEKRNLDLVICDEGHRLKN 451
+D K + LK P + VLI +E +++ D + + N L + DE HRLKN
Sbjct: 2109 MIQDYEYYYKTESGKVLKEPIKFNVLITTFEMIVT--DYMDLKAFNWRLCVIDEAHRLKN 2166
Query: 452 KDSKILKVLQSLDIEKKIVLSGTPIQNDLEEFYTIIDFINPGILGSFGRFKREY 505
++ K+L+ L+ L++E +++LSGTP+QN++ E +++++F+ P S F E+
Sbjct: 2167 RNCKLLEGLRQLNLEHRVLLSGTPLQNNISELFSLLNFLEPSQFSSQEEFMSEF 2220
>SPAC25A8.01c [B] KOG0389 SNF2 family DNA-dependent ATPase
Length = 922
Score = 100 bits (250), Expect = 8e-21
Identities = 57/144 (39%), Positives = 79/144 (54%)
Query: 653 EKVVVISNYTQTLDIIEGHCSSEGYTSARLDGSTATKTRDQIVTSFNNDPSIFVFLLSAK 712
++VV+ S +TQ LDI++ S R DGST R ++ F D SI VFLLS K
Sbjct: 778 DRVVLFSQFTQVLDILQLVMKSLNLKFLRFDGSTQVDFRQDLIDQFYADESINVFLLSTK 837
Query: 713 SGGVGLNLIGASRLVLFDNDWNPSIDLQAMSRIHRDGQRRPCFIYRLVTTGCIDEKILQR 772
+GG G+NL A+ ++L+D +NP DLQA R HR GQ++ +Y+ V I+E I +
Sbjct: 838 AGGFGINLACANMVILYDVSFNPFDDLQAEDRAHRVGQKKEVTVYKFVVKDTIEEHIQRL 897
Query: 773 QLMKIALSKKFLDSATDQSKNDDD 796
KIAL +A DDD
Sbjct: 898 ANAKIALDATLSGNAETVEAEDDD 921
Score = 86.7 bits (213), Expect = 2e-16
Identities = 70/271 (25%), Positives = 135/271 (48%), Gaps = 29/271 (10%)
Query: 317 LLADEMGLGKXXXXXXXXXXXXKQTPYPTIINQRGVTLAGEISKVLIVCPVTLIGNWKKE 376
+LADEMGLGK + +++ + + L++ P + + NW +E
Sbjct: 409 ILADEMGLGKTCQTIA----------FFSLLMDKNIN-----GPHLVIAPASTMENWLRE 453
Query: 377 FKKWLPMNRIGVLTLHSRNSPTEDKAQVRSFLKVPRTYQVLIVGYEKLLSIKDE---LQN 433
F K+ P +I L S+ E + ++ S +Y V++ Y + K + L+N
Sbjct: 454 FAKFCPKLKIE-LYYGSQVEREEIRERINSNKD---SYNVMLTTYRLAATSKADRLFLRN 509
Query: 434 EKRNLDLVICDEGHRLKNKDSKILKVLQSLDIEKKIVLSGTPIQNDLEEFYTIIDFINPG 493
+K N+ + DEGH LKN+ S+ + L S+ + +++L+GTP+QN+L+E +++ FI P
Sbjct: 510 QKFNV--CVYDEGHYLKNRASERYRHLMSIPADFRVLLTGTPLQNNLKELISLLAFILPH 567
Query: 494 ILGSFGRFKREYILPIARSRDVNAKQNQTLVEQGLLRSDQLIEITKRFILRRTNEILQQY 553
+ +G + I + +S + + + L EQ + R+ ++ F+LRR +
Sbjct: 568 VF-DYGLKSLDVIFTMKKSPESDF-ERALLSEQRVSRAKMMM---APFVLRRKKSQVLDA 622
Query: 554 LPPRTDLIIFCKPTAEQVEAFHKILTEGQLN 584
LP +T +I FC+ + E+ + ++ +N
Sbjct: 623 LPKKTRIIEFCEFSEEERRRYDDFASKQSVN 653
>SPBC582.10c [KL] KOG1001 Helicase-like transcription factor HLTF/DNA helicase
RAD5 DEAD-box superfamily
Length = 830
Score = 100 bits (248), Expect = 1e-20
Identities = 53/131 (40%), Positives = 77/131 (58%)
Query: 654 KVVVISNYTQTLDIIEGHCSSEGYTSARLDGSTATKTRDQIVTSFNNDPSIFVFLLSAKS 713
K ++ S +T LDII+ H G R DG + R++ + +D V L S K
Sbjct: 672 KTIIFSQFTTFLDIIDLHLRKAGIGFVRYDGRMNNRAREKSLDLLRSDSGTQVLLCSLKC 731
Query: 714 GGVGLNLIGASRLVLFDNDWNPSIDLQAMSRIHRDGQRRPCFIYRLVTTGCIDEKILQRQ 773
G +GLNL ASR++L D WNP+I+ QA+ R+HR GQRR +Y+LV I+EKI++ Q
Sbjct: 732 GALGLNLTCASRVILCDVWWNPAIEEQAIDRVHRIGQRRDVLVYKLVVENTIEEKIVELQ 791
Query: 774 LMKIALSKKFL 784
+K L+K+ L
Sbjct: 792 NLKRDLAKQAL 802
Score = 62.0 bits (149), Expect = 4e-09
Identities = 82/370 (22%), Positives = 145/370 (39%), Gaps = 74/370 (20%)
Query: 171 TDIPVAKKHKATIE-----SKPPIQTFIPKITTKFKPLRKHLNGEPKVPPAQKQLVDQPT 225
T +P +KAT + + PI IP+ +T KH +K + PT
Sbjct: 133 TKVPEVSINKATSKRTDLINDKPIVIPIPRASTSTLYFGKH---NKPTSENRKGPIGIPT 189
Query: 226 VKSALPPLSQELIGQITYSPLFDPVSIKDPLIMNKTENHKVSVIVDPLLSKTLRPHQREG 285
+ +Q ++ ++ + + D ++KD + ++ P + L HQ +G
Sbjct: 190 EEILTSQNTQAMLHKLFENNVLD--NVKDDSMQRQSS-------FIPGMHIRLLDHQVQG 240
Query: 286 VKFLYDCVMNMVHTKGDESMILERDDDIKGCLLADEMGLGKXXXXXXXXXXXXKQTPYPT 345
+ +L K E++ G +LAD+MGLGK P P
Sbjct: 241 LTWL----------KSRETV---SKSSASGGILADDMGLGKTIQMIALILSH----PLPK 283
Query: 346 IINQRGVTLAGEISKVLIVCPVTLIGNWKKEFKKWLPMNRIGVLTLHSRNSPTEDKAQVR 405
+ I L+V P++LI W+ E + +++ + H A
Sbjct: 284 KKHS--------IKSTLVVAPLSLIKQWESEVQT---KSKLTAIVYHG--------ASRY 324
Query: 406 SFLKVPRTYQVLIVGYEKLLSI--------------KDELQNEKRNLDL-------VICD 444
LKV Y V+I Y+ L+S + EK+ L +I D
Sbjct: 325 KLLKVIHEYDVVITTYQILVSEWVSHNTTGTDGKSPTEAKSYEKKKPSLFAFYWWRIILD 384
Query: 445 EGHRLKNKDSKILKVLQSLDIEKKIVLSGTPIQNDLEEFYTIIDFINPGILGSFGRFKRE 504
E H +KNK SK +L + L+GTP+QN+++E Y+++ F++ +K +
Sbjct: 385 EAHTIKNKSSKSALACCALQGINRWCLTGTPLQNNVDELYSLVKFLHINPFNDQSVWKDQ 444
Query: 505 YILPIARSRD 514
LP+ + +
Sbjct: 445 ISLPLCQGEE 454
>At5g22750 [KL] KOG1001 Helicase-like transcription factor HLTF/DNA helicase
RAD5 DEAD-box superfamily
Length = 1029
Score = 100 bits (248), Expect = 1e-20
Identities = 59/171 (34%), Positives = 96/171 (55%), Gaps = 8/171 (4%)
Query: 640 LLSLLHELK--TKTDEKVVVISNYTQTLDIIEGHCSSEGYTSARLDGSTATKTRDQIVTS 697
+ +LL EL+ + K ++ S +T LD+++ S ++ RLDG+ + + R++++
Sbjct: 865 ITALLEELEGLRSSGSKSILFSQWTAFLDLLQIPLSRNNFSFVRLDGTLSQQQREKVLKE 924
Query: 698 FNNDPSIFVFLLSAKSGGVGLNLIGASRLVLFDNDWNPSIDLQAMSRIHRDGQRRPCFIY 757
F+ D SI V L+S K+GGVG+NL AS + D WNP+++ QA+ RIHR GQ + I
Sbjct: 925 FSEDGSILVLLMSLKAGGVGINLTAASNAFVMDPWWNPAVEEQAVMRIHRIGQTKEVKIR 984
Query: 758 RLVTTGCIDEKILQRQLMKIALSKKFLDSATDQSKNDDDLFQQEELKDLFT 808
R + G ++E++ Q K + + TDQ + EELK LFT
Sbjct: 985 RFIVKGTVEERMEAVQARK---QRMISGALTDQEVRSARI---EELKMLFT 1029
Score = 79.0 bits (193), Expect = 3e-14
Identities = 64/257 (24%), Positives = 118/257 (45%), Gaps = 18/257 (7%)
Query: 362 LIVCPVTLIGNWKKEFKKWLPMNRIGVLTLHSRNSPTEDKAQVRSFLKVPRTYQVLIVGY 421
LIVCP+TL+G WK E + + V + ++ P + K +S + + TY VL +
Sbjct: 493 LIVCPMTLLGQWKTEIEMHAKPGSLSVYVHYGQSRPKDAKLLSQSDVVIT-TYGVLTSEF 551
Query: 422 EKLLSIKDELQNEKRNLDLVICDEGHRLKNKDSKILKVLQSLDIEKKIVLSGTPIQNDLE 481
+ S E R +V+ DE H +KN S+I +L +++ L+GTPIQN+LE
Sbjct: 552 SQENSADHEGIYAVRWFRIVL-DEAHTIKNSKSQISLAAAALVADRRWCLTGTPIQNNLE 610
Query: 482 EFYTIIDFINPGILGSFGRFKREYILPIARSRDVNAKQNQTLVEQGLLRSDQLIEITKRF 541
+ Y+++ F+ G++ + + P + K Q++++ +LR TK
Sbjct: 611 DLYSLLRFLRIEPWGTWAWWNKLVQKPFEEGDERGLKLVQSILKPIMLRR------TKSS 664
Query: 542 ILRRTNEILQQYLPPRTDLIIFCKPTAEQVEAFHKILTEGQLNFSNM--------TFNSS 593
R IL LPP +I+C+ + + + + + ++ F + S
Sbjct: 665 TDREGRPIL--VLPPADARVIYCELSESERDFYDALFKRSKVKFDQFVEQGKVLHNYASI 722
Query: 594 LGLITLFKKICNSTRLI 610
L L+ ++ C+ L+
Sbjct: 723 LELLLRLRQCCDHPFLV 739
>At3g42670 [L] KOG0390 DNA repair protein SNF2 family
Length = 1256
Score = 100 bits (248), Expect = 1e-20
Identities = 131/601 (21%), Positives = 234/601 (38%), Gaps = 107/601 (17%)
Query: 272 PLLSKTLRPHQREGVKFLYDCVMNMVHTKGDESMILERDDDIKGCLLADEMGLGKXXXXX 331
P L + L HQ++ +FL+ + V +M+ D I GC+++ G GK
Sbjct: 668 PQLKRKLHLHQKKAFEFLWKNLAGSVVP----AMMDPSSDKIGGCVVSHTPGAGKTFLII 723
Query: 332 XXXXXXXKQTPYPTIINQRGVTLAGEISKVLIVCPVTLIGNWKKEFKKW-LPMNRIGVLT 390
K P + L++ P T + W KEF KW +P + V
Sbjct: 724 AFLASYLKIFPG---------------KRPLVLAPKTTLYTWYKEFIKWEIP---VPVHL 765
Query: 391 LHSRNSPTEDKAQVRSFLKVPRTYQ--------------------VLIVGYEKLLSIKDE 430
LH R + K + F +P+ Q VL++GY L++ E
Sbjct: 766 LHGRRTYCMSKEKTIQFEGIPKPSQDVMHVLDCLDKIQKWHAQPSVLVMGYTSFLTLMRE 825
Query: 431 ----------LQNEKRNLDLVICDEGHRLKNKDSKILKVLQSLDIEKKIVLSGTPIQNDL 480
+ + + L++ DEGH ++ S++ K L +D + +I+LSGT QN+
Sbjct: 826 DSKFAHRKYMAKVLRESPGLLVLDEGHNPRSTKSRLRKALMKVDTDLRILLSGTLFQNNF 885
Query: 481 EEFYTIIDFINPGILGSFGRFKREYILPIARSRDVN-AKQNQTLVEQGLLRSDQLIEITK 539
E++ + P +F E ++ + + N A+Q + + R L I K
Sbjct: 886 CEYFNTLCLARP-------KFVHEVLVELDKKFQTNQAEQKAPHLLENRARKFFLDIIAK 938
Query: 540 RFILRRTNEILQ------------------------QYLPPRTDLIIFCKPTAEQVEAFH 575
+ + +E LQ LP + T Q H
Sbjct: 939 KIDTKVGDERLQGLNMLRNMTSGFIDNYEGSGSGSGDVLPGLQIYTLLMNSTDVQ----H 994
Query: 576 KILTEGQLNFSNMTFNSSLGLITLFKKICNSTRLIKTDP-----YYEERLSQVQXXXXXX 630
K LT+ Q N + L L L L+KT + + L +++
Sbjct: 995 KSLTKLQ-NIMSTYHGYPLELELLITLAAIHPWLVKTTTCCAKFFNPQELLEIEKLKHDA 1053
Query: 631 XXXXXXLRILLSLLHELKTKTDEKVVV----ISNYTQTLDIIEGHCS-SEGYTSARLDGS 685
+ +L + +K EK+++ I+ L++ E G L G
Sbjct: 1054 KKGSKVMFVLNLVFRVVKR---EKILIFCHNIAPIRLFLELFENVFRWKRGRELLTLTGD 1110
Query: 686 TATKTRDQIVTSFNN-DPSIFVFLLSAKSGGVGLNLIGASRLVLFDNDWNPSIDLQAMSR 744
R +++ F V L S + G++L ASR+++ D++WNPS QA++R
Sbjct: 1111 LELFERGRVIDKFEEPGGQSRVLLASITACAEGISLTAASRVIMLDSEWNPSKTKQAIAR 1170
Query: 745 IHRDGQRRPCFIYRLVTTGCIDEKILQRQLMKIALSKKFLDSATDQSKNDDDLFQQEELK 804
R GQ++ ++Y+L++ G ++E +R K +S +++ D +Q E+++
Sbjct: 1171 AFRPGQQKVVYVYQLLSRGTLEEDKYRRTTWKEWVSSMIF---SEEFVEDPSQWQAEKIE 1227
Query: 805 D 805
D
Sbjct: 1228 D 1228
>SPCC330.01c [L] KOG1002 Nucleotide excision repair protein RAD16
Length = 963
Score = 99.8 bits (247), Expect = 2e-20
Identities = 54/155 (34%), Positives = 85/155 (54%), Gaps = 4/155 (2%)
Query: 654 KVVVISNYTQTLDIIEGHCSSEGYTSARLDGSTATKTRDQIVTSFNNDPSIFVFLLSAKS 713
K +V S +T LD+I G+ +LDG K R + +F+ND +I +FL+S K+
Sbjct: 812 KSIVFSQFTSMLDLIHWRLRKAGFNCVKLDGGMTPKARAATIEAFSNDINITIFLVSLKA 871
Query: 714 GGVGLNLIGASRLVLFDNDWNPSIDLQAMSRIHRDGQRRPCFIYRLVTTGCIDEKILQRQ 773
GGV LNL AS++ + D WN ++ QAM RIHR GQ+RP + L I+ KI++ Q
Sbjct: 872 GGVALNLTEASQVFMMDPWWNGAVQWQAMDRIHRIGQKRPIKVITLCIENSIESKIIELQ 931
Query: 774 LMKIALSKKFLDSATDQSKNDDDLFQQEELKDLFT 808
K + + + DQ + + E+++ LF+
Sbjct: 932 EKK----AQMIHATIDQDEKALNQLSVEDMQFLFS 962
Score = 58.9 bits (141), Expect = 3e-08
Identities = 57/221 (25%), Positives = 90/221 (39%), Gaps = 44/221 (19%)
Query: 278 LRPHQREGVKFLYDCVMNMVHTKGDESMILERDDDIKGCLLADEMGLGKXXXXXXXXXXX 337
L P QREGV +L + D G +LADEMG+GK
Sbjct: 357 LLPFQREGVYWLKR----------------QEDSSFGGGILADEMGMGKTI--------- 391
Query: 338 XKQTPYPTIINQRGVTLAGEISKVLIVCPVTLIGNWKKEFKKWLPMNRIGVLTLHSRNSP 397
QT + RG L+V PV I WK+E N+ L+ +
Sbjct: 392 --QTIALLLSEPRG-------KPTLVVAPVVAIMQWKEEIDTHT--NKALSTYLYYGQAR 440
Query: 398 TEDKAQVRSFLKVPRTYQVLIVGYEKLLS--------IKDELQNEKRNLDLVICDEGHRL 449
++ S+ V +Y V+ Y K S +K++ + +I DE H +
Sbjct: 441 DISGEELSSYDVVLTSYNVIESVYRKERSGFRRKNGVVKEKSLLHQMEFYRIILDEAHGI 500
Query: 450 KNKDSKILKVLQSLDIEKKIVLSGTPIQNDLEEFYTIIDFI 490
K++ + + L +KI LSGTP+QN + E ++++ F+
Sbjct: 501 KSRTCNTARAVCGLRTTRKICLSGTPLQNRIGELFSLLRFL 541
>HsM14149926 [K] KOG0384 Chromodomain-helicase DNA-binding protein
Length = 757
Score = 99.4 bits (246), Expect = 2e-20
Identities = 54/155 (34%), Positives = 81/155 (51%), Gaps = 2/155 (1%)
Query: 654 KVVVISNYTQTLDIIEGHCSSEGYTSARLDGSTATKTRDQIVTSF-NNDPSIFVFLLSAK 712
KV++ S + LDI+E + YT R+DG R + F D FVFLL +
Sbjct: 24 KVLIFSQMVRCLDILEDYLIQRRYTYERIDGRVRGNLRQAAIDRFCKPDSDRFVFLLCTR 83
Query: 713 SGGVGLNLIGASRLVLFDNDWNPSIDLQAMSRIHRDGQRRPCFIYRLVTTGCIDEKILQR 772
+GG+G+NL A ++FD+DWNP DLQA +R HR GQ + +YRL+T + ++ +
Sbjct: 84 AGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKVYRLITRNSYEREMFDK 143
Query: 773 QLMKIALSKKFL-DSATDQSKNDDDLFQQEELKDL 806
+K+ L K L D N + E++DL
Sbjct: 144 ASLKLGLDKAVLQDINRKGGTNGVQQLSKMEVEDL 178
>Hs13376715 [K] KOG0384 Chromodomain-helicase DNA-binding protein
Length = 336
Score = 97.8 bits (242), Expect = 7e-20
Identities = 92/343 (26%), Positives = 160/343 (45%), Gaps = 50/343 (14%)
Query: 352 VTLAGEISKVLIVCPVTLIGNWKKEFKKWLPMNRIGVL-TLHSRNSPTEDKAQVRS---- 406
+ L G LI+ P++ I NW++EF+ W +N + +L SR + + R
Sbjct: 16 ILLTGIRGPFLIIAPLSTIANWEREFRTWTDINVVVYHGSLISRQMIQQYEMYFRDSQGR 75
Query: 407 FLKVPRTYQVLIVGYEKLLSIKDELQNEKRNLDLVICDEGHRLKNKDSKILKVLQSLDIE 466
++ +Q +I +E +L EL + VI DE HRLKNK+ K+L+ L+ +++E
Sbjct: 76 IIRGAYRFQAIITTFEMILGGCGELNAIEWRC--VIIDEAHRLKNKNCKLLEGLKLMNLE 133
Query: 467 KKIVLSGTPIQNDLEEFYTIIDFINPGILGSFGRFKREYILPIARSRDVNAKQNQTLVEQ 526
K++L+GTP+QN +EE ++++ F+ P S F +E+ D+ ++
Sbjct: 134 HKVLLTGTPLQNTVEELFSLLHFLEPLRFPSESTFMQEF-------GDLETEE------- 179
Query: 527 GLLRSDQLIEITKRFILRRTNEILQQYLPPRTDLIIFCKPTAEQVEAFHKILTE------ 580
+ +L I K +LRR E +++ L P+ + II + T Q + + IL +
Sbjct: 180 ---QVQKLQAILKPMMLRRLKEDVEKKLAPKEETIIEVELTNIQKKYYRAILEKNFSFLS 236
Query: 581 ---GQLNFSNMTFNSSLGLITLFKKICNSTRLIKTDPYYEERLSQVQXXXXXXXXXXXXL 637
GQ N N+ N+ + L +K CN LIK EE++ L
Sbjct: 237 KGAGQTNVPNLV-NTMMEL----RKCCNHPYLIKG---AEEKILGEFRDTYNPAASDFHL 288
Query: 638 RIL------LSLLHELKTKT---DEKVVVISNYTQTLDIIEGH 671
+ + L L+ +L K KV++ S + LDI+E +
Sbjct: 289 QAMIQSAGKLVLIDKLLPKMKAGGHKVLIFSQMVRCLDILEDY 331
>At5g05130 [KL] KOG1001 Helicase-like transcription factor HLTF/DNA helicase
RAD5 DEAD-box superfamily
Length = 881
Score = 95.5 bits (236), Expect = 3e-19
Identities = 56/147 (38%), Positives = 86/147 (58%), Gaps = 5/147 (3%)
Query: 640 LLSLLHELKTKT-DEKVVVISNYTQTLDIIEGHCSSEGYTSARLDGSTATKTRDQIVTSF 698
LLSLL + + + K VV S + + L ++E + G+T RLDG+ K R Q++ F
Sbjct: 712 LLSLLMASRQENPNTKSVVFSQFRKMLLLLETPLKAAGFTILRLDGAMTVKKRTQVIGEF 771
Query: 699 NNDPSI---FVFLLSAKSGGVGLNLIGASRLVLFDNDWNPSIDLQAMSRIHRDGQRRPCF 755
N P + V L S K+ G G+NL ASR+ LFD WNP+++ QAM RIHR GQ++
Sbjct: 772 GN-PELTGPVVLLASLKASGTGINLTAASRVYLFDPWWNPAVEEQAMDRIHRIGQKQEVK 830
Query: 756 IYRLVTTGCIDEKILQRQLMKIALSKK 782
+ R++ I+E++L+ Q K L+ +
Sbjct: 831 MIRMIARNSIEERVLELQQKKKNLANE 857
Score = 52.0 bits (123), Expect = 4e-06
Identities = 70/344 (20%), Positives = 130/344 (37%), Gaps = 62/344 (18%)
Query: 308 ERDDDIKGCLLADEMGLGKXXXXXXXXXX-----XXKQTPYPTIINQRGVTLAGEISK-- 360
+R D ++G + AD+MGLGK TP ++ G + + K
Sbjct: 273 KRPDPLRGGVFADDMGLGKTLTLLSLIAFDRYGNASTSTPTEEPLDGEGDKIEKKGKKRG 332
Query: 361 ---------------------------VLIVCPVTLIGNWKKEFKKWLPMNRIGVLTLHS 393
LIVCP ++I W + ++ + V H
Sbjct: 333 RGKSSESVTRKKLKTDDVVGMNVSQKTTLIVCPPSVISAWITQLEEHTVPGILKVYMYHG 392
Query: 394 RNSPTEDKAQVRSFLKVPRTYQVLIVGYEKLLSIKDELQNEKRNLDLVICDEGHRLKNKD 453
T+D ++ + V TY L V ++ +K +I DE H +KN +
Sbjct: 393 -GERTDDVNELMKYDIVLTTYGTLAVEESW-----EDSPVKKMEWLRIILDEAHTIKNAN 446
Query: 454 SKILKVLQSLDIEKKIVLSGTPIQNDLEEFYTIIDFINPGILGSFGRFKREYILPIARSR 513
++ +V+ L ++ ++GTPIQN + Y+++ F+ ++ P+ +
Sbjct: 447 AQQSRVVCKLKASRRWAVTGTPIQNGSFDLYSLMAFLRFEPFSIKSYWQSLIQRPLGQGN 506
Query: 514 DVNAKQNQTLVEQGLLRSDQLIEITKRFILRRTNEILQQYLPPRTDLIIFCKPTAEQVEA 573
++GL R L+ LRRT E LPP+T + + + E+ +
Sbjct: 507 -----------KKGLSRLQVLMATIS---LRRTKEKSLIGLPPKTVETCYVELSPEERQL 552
Query: 574 FHKILTEGQLNFSNMTFNSS--------LGLITLFKKICNSTRL 609
+ + E + N+ N S L +I +++C+ L
Sbjct: 553 YDHMEGEAKGVVQNLINNGSLMRNYSTVLSIILRLRQLCDDMSL 596
>At1g05120 [L] KOG1002 Nucleotide excision repair protein RAD16
Length = 833
Score = 95.5 bits (236), Expect = 3e-19
Identities = 53/155 (34%), Positives = 80/155 (51%), Gaps = 4/155 (2%)
Query: 654 KVVVISNYTQTLDIIEGHCSSEGYTSARLDGSTATKTRDQIVTSFNNDPSIFVFLLSAKS 713
K +V S +T LD+I G + +L GS RD + F DP VFL+S K+
Sbjct: 682 KAIVFSQFTSFLDLINYTLGKCGVSCVQLVGSMTMAARDTAINKFKEDPDCRVFLMSLKA 741
Query: 714 GGVGLNLIGASRLVLFDNDWNPSIDLQAMSRIHRDGQRRPCFIYRLVTTGCIDEKILQRQ 773
GGV LNL AS + + D WNP+++ QA RIHR GQ +P + R + ++E+IL+ Q
Sbjct: 742 GGVALNLTVASHVFMMDPWWNPAVERQAQDRIHRIGQYKPIRVVRFIIENTVEERILRLQ 801
Query: 774 LMKIALSKKFLDSATDQSKNDDDLFQQEELKDLFT 808
K + + S+ +E+++ LFT
Sbjct: 802 KKK----ELVFEGTVGGSQEAIGKLTEEDMRFLFT 832
>7298962 [KL] KOG4439 RNA polymerase II transcription termination factor
TTF2/lodestar DEAD-box superfamily
Length = 965
Score = 95.5 bits (236), Expect = 3e-19
Identities = 55/172 (31%), Positives = 92/172 (52%), Gaps = 1/172 (0%)
Query: 637 LRILLSLLHELKTKTDEKVVVISNYTQTLDIIEGHCSSEGYTSARLDGSTATKTRDQIVT 696
L++++ L EL T T++K++V S + L I+ + + +G K R+ ++
Sbjct: 792 LKMVIDKLEELLTGTNDKIIVTSQWVSYLAIVRKRLQDLSWETLDFNGQLTAKEREIVLR 851
Query: 697 SFNNDPSIFVFLLSAKSGGVGLNLIGASRLVLFDNDWNPSIDLQAMSRIHRDGQRRPCFI 756
FN + V LLS +GGVGLNL A+ +++ D WNP ++ QA RI+R GQ +P FI
Sbjct: 852 DFNANNEKRVLLLSLTAGGVGLNLNVANHMLIVDLHWNPQLERQAQDRIYRYGQTKPTFI 911
Query: 757 YRLVTTGCIDEKILQRQLMKIALSKKFL-DSATDQSKNDDDLFQQEELKDLF 807
YR + ++++I Q K+ ++K L + + +K ELK LF
Sbjct: 912 YRYMCQDTVEQRIKSLQDCKLEIAKVVLPEEGGEVTKCVGGGLNLAELKKLF 963
Score = 55.1 bits (131), Expect = 5e-07
Identities = 51/229 (22%), Positives = 96/229 (41%), Gaps = 34/229 (14%)
Query: 359 SKVLIVCPVTLIGNWKKEFKKWLPMNRIGVLTLHSRNSPTEDKAQVRSFLKVPRTYQVLI 418
+ L+VCP++++ W E + N I VLT H P + + +F R+Y ++I
Sbjct: 390 ANTLVVCPMSVMCQWAHEVASKVAQNAIRVLTFH---GPNRHEIGIEAF----RSYDLVI 442
Query: 419 VGYEKLLSIKDELQNEKRNL----DLVICDEGHRLKNKDSKILKVLQSLDIEKKIVLSGT 474
Y +++ N + VI DE H ++N + + L L+GT
Sbjct: 443 TSYNLVVNELKRYGNTSPLFAVYWNRVILDEAHIIRNSKTNCCNSVCQLRAHCHWALTGT 502
Query: 475 PIQNDLEEFYTIIDFINPGILGSFGRFKREYILPIARSRDVNAKQNQTLVEQGLLRSDQL 534
P+QN + + ++ F+N ++K+ + + +L +L
Sbjct: 503 PVQNRGVDVFALLRFVNVPNFQDLQQWKKN-------------------LNESMLGHRRL 543
Query: 535 IEITKRFILRRTNEILQQY--LP--PRTDLIIFCKPTAEQVEAFHKILT 579
I K +LRRT + LQ +P P + + C ++ A ++IL+
Sbjct: 544 NFIIKPLMLRRTKQKLQASGDMPALPSLKIELICVQLSKTEMAVYQILS 592
>At1g50410 [KL] KOG1001 Helicase-like transcription factor HLTF/DNA helicase
RAD5 DEAD-box superfamily
Length = 1056
Score = 94.4 bits (233), Expect = 7e-19
Identities = 53/158 (33%), Positives = 85/158 (53%), Gaps = 6/158 (3%)
Query: 654 KVVVISNYTQTLDIIEGHCSSEGYTSARLDGSTATKTRDQIVTSFNNDPSIFVFLLSAKS 713
K ++ S +T LD++E RLDG+ + RD+ V F+NDP + V ++S K+
Sbjct: 903 KTIIFSQWTGMLDLVELSLIENSIEFRRLDGTMSLIARDRAVKEFSNDPDVKVMIMSLKA 962
Query: 714 GGVGLNLIGASRLVLFDNDWNPSIDLQAMSRIHRDGQRRPCFIYRLVTTGCIDEKILQRQ 773
G +GLN+I A ++L D WNP+ + QA+ R HR GQ RP + R+ ++++IL Q
Sbjct: 963 GNLGLNMIAACHVILLDLWWNPTTEDQAIDRAHRIGQTRPVTVTRITIKNTVEDRILALQ 1022
Query: 774 LMKIALSKKFLDSA--TDQSKNDDDLFQQEELKDLFTI 809
K +K + SA D + ++LK LF +
Sbjct: 1023 EEK----RKMVASAFGEDHGGSSATRLTVDDLKYLFMV 1056
>YBR114w [L] KOG1002 Nucleotide excision repair protein RAD16
Length = 790
Score = 93.6 bits (231), Expect = 1e-18
Identities = 51/141 (36%), Positives = 81/141 (57%), Gaps = 1/141 (0%)
Query: 637 LRILLSLLHELKT-KTDEKVVVISNYTQTLDIIEGHCSSEGYTSARLDGSTATKTRDQIV 695
+ L+ L++L++ K K +V S +T LD++E G+ + +L GS + RD+ +
Sbjct: 621 IEALVEELYKLRSNKRTIKSIVFSQFTSMLDLVEWRLKRAGFQTVKLQGSMSPTQRDETI 680
Query: 696 TSFNNDPSIFVFLLSAKSGGVGLNLIGASRLVLFDNDWNPSIDLQAMSRIHRDGQRRPCF 755
F N+ VFL+S K+GGV LNL AS++ + D WNPS++ Q+ R+HR GQ RP
Sbjct: 681 KYFMNNIQCEVFLVSLKAGGVALNLCEASQVFILDPWWNPSVEWQSGDRVHRIGQYRPVK 740
Query: 756 IYRLVTTGCIDEKILQRQLMK 776
I R I+ +I++ Q K
Sbjct: 741 ITRFCIEDSIEARIIELQEKK 761
Score = 71.6 bits (174), Expect = 5e-12
Identities = 100/438 (22%), Positives = 167/438 (37%), Gaps = 113/438 (25%)
Query: 81 TANYRRVTN-----KKNKTWDGDGYANMTSDDKLKFYNEAGVSLGSVPIKDRDLYETIWR 135
+ NY +++ K +KT G + +D + + Y + + S D+D
Sbjct: 18 SVNYNELSDDDTAVKNSKTLQLKGNSENVNDSQDEEYRDDATLVKSPDDDDKD------- 70
Query: 136 IGSTEFQIDYRISDQEELSSVQ----------DICKIKVSHTLGITDIPVAKKHKATIES 185
F ID SD+E ++ + +I +IK + D P+ KK K T
Sbjct: 71 -----FIIDLTGSDKERTATDENTHAIKNDNDEIIEIKEERDVSDDDEPLTKKRKTTARK 125
Query: 186 KPPIQTFIPKITTKFKPLRKHLNGEPKVPPAQKQLV----DQPTVKSALPPLSQELIGQI 241
K K +TK K PKV P ++ + P +++ L
Sbjct: 126 KKK------KTSTKKK--------SPKVTPYERNTLRLYEHHPELRNVFTDLKN------ 165
Query: 242 TYSPLFDPVSIKDPLIMNKTENHKVSVIVDPLLSKTLRPHQREGVKFLYDCVMNMVHTKG 301
+P + P K P D + K L P Q EG+ +L
Sbjct: 166 --APPYVPQRSKQP---------------DGMTIKLL-PFQLEGLHWL------------ 195
Query: 302 DESMILERDDDIKGCLLADEMGLGKXXXXXXXXXXXXKQTPYPTIINQRGVTLAGEISKV 361
I + + G +LADEMG+GK ++P
Sbjct: 196 ----ISQEESIYAGGVLADEMGMGKTIQTIALLMNDLTKSPS------------------ 233
Query: 362 LIVCPVTLIGNWKKEFKKWLPMNRIGVLTLHSRNSPTEDKAQVRSFLKVPRTYQVLIVGY 421
L+V P + WK E ++ ++ + H + T+ K ++ + V TY VL +
Sbjct: 234 LVVAPTVALMQWKNEIEQHTK-GQLKIYIYHGASRTTDIK-DLQGYDVVLTTYAVLESVF 291
Query: 422 EKL---LSIKDELQNEK---RNLDL--VICDEGHRLKNKDSKILKVLQSLDIEKKIVLSG 473
K K+ L + N+D VI DE H +K++ S + + +L +K+ LSG
Sbjct: 292 RKQNYGFRRKNGLFKQPSVLHNIDFYRVILDEAHNIKDRQSNTARAVNNLKTQKRWCLSG 351
Query: 474 TPIQNDLEEFYTIIDFIN 491
TP+QN + E Y++I F+N
Sbjct: 352 TPLQNRIGEMYSLIRFLN 369
>At3g57300 [L] KOG0388 SNF2 family DNA-dependent ATPase
Length = 1496
Score = 93.6 bits (231), Expect = 1e-18
Identities = 52/140 (37%), Positives = 81/140 (57%), Gaps = 10/140 (7%)
Query: 637 LRILLSLLHELKTKTDEKVVVISNYTQTLDIIEGHCSSEGYTSARLDGSTATKTRDQIVT 696
L+ L LL L+ + +V++ + T+ L+I+E + + Y RLDGS+ R +V
Sbjct: 1208 LQTLDILLKRLRAG-NHRVLLFAQMTKMLNILEDYMNYRKYKYLRLDGSSTIMDRRDMVR 1266
Query: 697 SFNNDPSIFVFLLSAKSGGVGLNLIGASRLVLFDNDWNPSIDLQAMSRIHRDGQRRPCFI 756
F + IFVFLLS ++GG+G+NL A ++ +++DWNP++DLQAM R HR GQ +
Sbjct: 1267 DFQHRSDIFVFLLSTRAGGLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTK---- 1322
Query: 757 YRLVTTGCIDEKILQRQLMK 776
++EKIL R K
Sbjct: 1323 -----DETVEEKILHRASQK 1337
Score = 86.7 bits (213), Expect = 2e-16
Identities = 82/362 (22%), Positives = 162/362 (44%), Gaps = 63/362 (17%)
Query: 267 SVIVDPLLSK-TLRPHQREGVKFLYDCVMNMVHTKGDESMILERDDDIKGCLLADEMGLG 325
S + P L K TL+ +Q +G+++L +C + + G +LADEMGLG
Sbjct: 574 STVQTPELFKGTLKEYQMKGLQWLVNCY----------------EQGLNG-ILADEMGLG 616
Query: 326 KXXXXXXXXXXXXKQTPYPTIINQRGVTLAGEISKVLIVCPVTLIGNWKKEFKKWLPMNR 385
K ++ + G L+V P +++ NW E ++ P
Sbjct: 617 KTIQAMAFLAHLAEEK-----------NIWGPF---LVVAPASVLNNWADEISRFCP--- 659
Query: 386 IGVLTLHSRNSPTEDKAQVRSFLKVPRTYQ------VLIVGYEKLLSIKDELQNEKRNLD 439
+ TL +++ +R + R Y+ +LI Y+ L++ DE +
Sbjct: 660 -DLKTLPYWGG-LQERTILRKNINPKRMYRRDAGFHILITSYQLLVT--DEKYFRRVKWQ 715
Query: 440 LVICDEGHRLKNKDSKILKVLQSLDIEKKIVLSGTPIQNDLEEFYTIIDFINPGILGSFG 499
++ DE +K+ S K L S + +++L+GTPIQN++ E + ++ FI P + +
Sbjct: 716 YMVLDEAQAIKSSSSIRWKTLLSFNCRNRLLLTGTPIQNNMAELWALLHFIMPMLFDNHD 775
Query: 500 RFKREYILPIARSRDVNAKQNQTLVEQGLLRSDQLIEITKRFILRRTNEILQQYLPPRTD 559
+F + ++ + +A+ TL E L ++L I K F+LRR + + L +T+
Sbjct: 776 QFNEWF----SKGIENHAEHGGTLNEHQL---NRLHAILKPFMLRRVKKDVVSELTTKTE 828
Query: 560 LIIFCKPTAEQVEAFH----------KILTEGQLNFSNMTFNSSLGLITLFKKICNSTRL 609
+ + CK ++ Q +AF+ ++ + F++ + + ++ +K+CN L
Sbjct: 829 VTVHCKLSSRQ-QAFYQAIKNKISLAELFDSNRGQFTDKKVLNLMNIVIQLRKVCNHPEL 887
Query: 610 IK 611
+
Sbjct: 888 FE 889
>SPBC23E6.02 [KL] KOG1001 Helicase-like transcription factor HLTF/DNA helicase
RAD5 DEAD-box superfamily
Length = 1040
Score = 93.2 bits (230), Expect = 2e-18
Identities = 50/143 (34%), Positives = 82/143 (56%), Gaps = 5/143 (3%)
Query: 647 LKTKTDEKVVVISNYTQTLDIIEGHCSSEGYTSARLDGSTATKTRDQIVTSFNNDPSIFV 706
+K + +K+++ S + L++ EG G +T R+Q + +F DP++ V
Sbjct: 878 IKKQPTDKILIFSQFVSFLELFTVPFRQEGIKYLMYTGGLSTAERNQALINFEVDPNVRV 937
Query: 707 FLLSAKSGGVGLNLIGASRLVLFDNDWNPSIDLQAMSRIHRDGQRRPCFIYRLVTTGCID 766
L+S K+G VGLNL A+ +++ D WNP I+ QA+ R HR GQ +P I R+VT I+
Sbjct: 938 LLISLKAGNVGLNLTCANHVIILDPFWNPYIEEQAVDRAHRIGQDKPVNILRIVTNNTIE 997
Query: 767 EKIL-----QRQLMKIALSKKFL 784
E++L +R+L+ AL +K L
Sbjct: 998 ERVLALQDRKRELIDSALGEKGL 1020
Score = 77.8 bits (190), Expect = 7e-14
Identities = 78/325 (24%), Positives = 142/325 (43%), Gaps = 54/325 (16%)
Query: 274 LSKTLRPHQREGVKFLYDCVMNMVHTKGDESMILERDDDIKGCLLADEMGLGKXXXXXXX 333
L TL HQ+EG+ +L + KG +LAD+MGLGK
Sbjct: 386 LIPTLMEHQKEGLMWLKRL----------------EESSKKGGILADDMGLGKTVQALAL 429
Query: 334 XXXXXKQTPYPTIINQRGVTLAGEISKVLIVCPVTLIGNWKKEF-KKWLPMNRIGVLTLH 392
++ + LI+ PV+L+ W E K P +R V H
Sbjct: 430 LVTRPPESK--------------SVKTTLIITPVSLLQQWHNEILTKIAPSHRPTVYIHH 475
Query: 393 SRNSPTEDKAQVRSFLKVPRTYQVLIVGYEKLL----SIKDELQNEK-RNLDL------- 440
+ + Q+ S+ V TY V+ ++ + SI+D +K +L
Sbjct: 476 GSSKKHKIAEQLMSYDIVLTTYNVIAYEFKNKMAYDKSIEDNAPIKKFEHLPFFEAEWYR 535
Query: 441 VICDEGHRLKNKDSKILKVLQSLDIEKKIVLSGTPIQNDLEEFYTIIDFINPGILGSFGR 500
VI DE +KN+++ + L+ + LSGTP+QN +EEFY++I F+ +
Sbjct: 536 VILDEAQTIKNRNTLAARGCCLLESTYRWCLSGTPMQNGVEEFYSLIKFLRIKPYSDWSS 595
Query: 501 FKREYILPIARSRDVNA--KQNQTLVEQGLLRSDQLIEITKRFILRRTNEILQQYLPPRT 558
F +++ +P++ + + +A K+ + L++ LLR + +I + IL LPP+T
Sbjct: 596 FSKDFTIPLSSNINTSAPMKRFRGLLKAVLLRRTKNTKIDGKPILT---------LPPKT 646
Query: 559 DLIIFCKPTAEQVEAFHKILTEGQL 583
+ ++ ++E ++ + + Q+
Sbjct: 647 AVKSETDLSSSEMEFYNTLQSGAQI 671
>At1g11100 [KL] KOG1001 Helicase-like transcription factor HLTF/DNA helicase
RAD5 DEAD-box superfamily
Length = 1227
Score = 93.2 bits (230), Expect = 2e-18
Identities = 51/157 (32%), Positives = 81/157 (51%), Gaps = 6/157 (3%)
Query: 653 EKVVVISNYTQTLDIIEGHCSSEGYTSARLDGSTATKTRDQIVTSFNNDPSIFVFLLSAK 712
EK +V + +T+ LD++E S G R DG RD V FN P + V ++S K
Sbjct: 1073 EKAIVFTQWTKMLDLLEAGLKSSGIQYRRFDGKMTVPARDAAVQDFNTLPDVSVMIMSLK 1132
Query: 713 SGGVGLNLIGASRLVLFDNDWNPSIDLQAMSRIHRDGQRRPCFIYRLVTTGCIDEKILQR 772
+ +GLN++ A +++ D WNP+ + QA+ R HR GQ RP + R ++++IL
Sbjct: 1133 AASLGLNMVAACHVIMLDLWWNPTTEDQAIDRAHRIGQTRPVKVVRFTVKDTVEDRILAL 1192
Query: 773 QLMKIALSKKFLDSATDQSKND--DDLFQQEELKDLF 807
Q K +K + SA + +N + E+L LF
Sbjct: 1193 QQKK----RKMVASAFGEHENGSRESHLSVEDLNYLF 1225
Score = 57.0 bits (136), Expect = 1e-07
Identities = 67/292 (22%), Positives = 111/292 (37%), Gaps = 52/292 (17%)
Query: 271 DPLLSKTLRPHQREGVKFLYDCVMNMVHTKGDESMILERDDDIKGCLLADEMGLGKXXXX 330
D +L+ +L HQR + + M+ T G+ G +LAD+ GLGK
Sbjct: 535 DGVLAVSLLRHQRIALSW-----MSQKETSGNPCF---------GGILADDQGLGKTVST 580
Query: 331 XXXXXXXXKQTPY-----------------------------PTIINQRGVTLAGEISKV 361
+ TPY ++ RG AG
Sbjct: 581 IALILTE-RSTPYLPCEEDSKNGGCNQSDHSQVVFNENKVVEDSLCKMRGRPAAG----T 635
Query: 362 LIVCPVTLIGNWKKEFKKWLPMN-RIGVLTLHSRNSPTEDKAQVRSFLKVPRTYQVLIVG 420
LIVCP +L+ W E +K + + + VL H S T+D ++ + V TY ++
Sbjct: 636 LIVCPTSLMRQWADELRKKVTLEAHLSVLVYHGC-SRTKDPHELAKYDVVITTYSLVSKR 694
Query: 421 YEKLLSIKDELQNEKRNLDL--VICDEGHRLKNKDSKILKVLQSLDIEKKIVLSGTPIQN 478
+ L + V+ DE +KN ++ L +++ LSGTPIQN
Sbjct: 695 KHMDCEPVEFLSGPLAQVSWFRVVLDEAQSIKNYKTQASIACSGLHAKRRWCLSGTPIQN 754
Query: 479 DLEEFYTIIDFINPGILGSFGRFKREYILPIARSRDVNAKQNQTLVEQGLLR 530
+ + Y+ F+ S+ F PI+ K Q ++++ +LR
Sbjct: 755 SIADLYSYFRFLKYDPYSSYQTFCETIKNPISSYPGEGYKTLQAILKKVMLR 806
>At5g20420 [L] KOG0390 DNA repair protein SNF2 family
Length = 1261
Score = 92.4 bits (228), Expect = 3e-18
Identities = 132/598 (22%), Positives = 245/598 (40%), Gaps = 100/598 (16%)
Query: 272 PLLSKTLRPHQREGVKFLYDCVMNMVHTKGDESMILERDDDIKGCLLADEMGLGKXXXXX 331
P L + L HQR +FL+ V V + S++ +I GC+++ G GK
Sbjct: 673 PKLKRKLHVHQRRAFEFLWRNVAGSV----EPSLMDPTSGNIGGCVISHSPGAGKTFLII 728
Query: 332 XXXXXXXKQTPYPTIINQRGVTLAGEISKVLIVCPVTLIGNWKKEFKKW-LPMNRIGVLT 390
K P + L++ P T + W KEF KW +P + V
Sbjct: 729 AFLTSYLKLFPG---------------KRPLVLAPKTTLYTWYKEFIKWEIP---VPVHL 770
Query: 391 LHSRNS-----------------PTEDKAQVRSFLKVPRTYQ----VLIVGYEKLLSIKD 429
+H R + P+ D V L+ + + VL++GY ++
Sbjct: 771 IHGRRTYCTFKQNKTVQFNGVPKPSRDVMHVLDCLEKIQKWHAHPSVLVMGYTSFTTLMR 830
Query: 430 E----------LQNEKRNLDLVICDEGHRLKNKDSKILKVLQSLDIEKKIVLSGTPIQND 479
E + + + L++ DEGH ++ S++ K L + + +I+LSGT QN+
Sbjct: 831 EDSKFAHRKYMAKVLRESPGLLVLDEGHNPRSTKSRLRKALMKVGTDLRILLSGTLFQNN 890
Query: 480 LEEFYTII-----DFINPGILGSFGRFKREYILPIA------RSR----DVNAKQ-NQTL 523
E++ + FI+ ++ +FK + + A R+R D+ AK+ + ++
Sbjct: 891 FCEYFNTLCLARPKFIHEVLMELDQKFKTNHGVNKAPHLLENRARKLFLDIIAKKIDASV 950
Query: 524 VEQGLLRSDQLIEITKRFI--LRRTNEILQQYLPPRTDLIIFCKPTAEQVEAFHKILTEG 581
++ L + L +T FI + LP + T Q HKILT+
Sbjct: 951 GDERLQGLNMLKNMTNGFIDNYEGSGSGSGDALPGLQIYTLVMNSTDIQ----HKILTKL 1006
Query: 582 QLNFSN-----MTFNSSLGLITLFKKICNSTRLIKTDPYYEERLSQVQXXXXXXXXXXXX 636
Q + + L + + S+ T + + LS++
Sbjct: 1007 QDVIKTYFGYPLEVELQITLAAIHPWLVTSSNCC-TKFFNPQELSEIGKLKHDAKKGSKV 1065
Query: 637 LRILLSLLHELKTKTDEKVVV-------ISNYTQTLDIIEGHCSSEGYTSARLDGSTATK 689
+ +L + +K EK+++ I +T+ + I G L G
Sbjct: 1066 MFVLNLIFRVVKR---EKILIFCHNIAPIRMFTELFENI--FRWQRGREILTLTGDLELF 1120
Query: 690 TRDQIVTSFN--NDPSIFVFLLSAKSGGVGLNLIGASRLVLFDNDWNPSIDLQAMSRIHR 747
R +++ F +PS V L S + G++L ASR+++ D++WNPS QA++R R
Sbjct: 1121 ERGRVIDKFEEPGNPS-RVLLASITACAEGISLTAASRVIMLDSEWNPSKTKQAIARAFR 1179
Query: 748 DGQRRPCFIYRLVTTGCIDEKILQRQLMKIALSKKFLDSATDQSKNDDDLFQQEELKD 805
GQ++ ++Y+L++ G ++E +R K +S +++ D L+Q E+++D
Sbjct: 1180 PGQQKVVYVYQLLSRGTLEEDKYRRTTWKEWVSCMIF---SEEFVADPSLWQAEKIED 1234
>At1g02670 [L] KOG1002 Nucleotide excision repair protein RAD16
Length = 678
Score = 92.4 bits (228), Expect = 3e-18
Identities = 51/147 (34%), Positives = 78/147 (52%), Gaps = 3/147 (2%)
Query: 654 KVVVISNYTQTLDIIEGHCSSEGYTSARLDGSTATKTRDQIVTSFNNDPSIFVFLLSAKS 713
K +V S +T LD+I G + +L GS + +D + +F +P V L+S ++
Sbjct: 527 KAIVFSQFTSFLDLISYALGKSGVSCVQLVGSMSKAAKDAALKNFKEEPDCRVLLMSLQA 586
Query: 714 GGVGLNLIGASRLVLFDNDWNPSIDLQAMSRIHRDGQRRPCFIYRLVTTGCIDEKILQRQ 773
GGV LNL AS + + D WNP+++ QA RIHR GQ +P + R + ++EKIL Q
Sbjct: 587 GGVALNLTAASHVFMMDPWWNPAVERQAQDRIHRIGQCKPVRVVRFIMEKTVEEKILTLQ 646
Query: 774 LMKIALSKKFL---DSATDQSKNDDDL 797
K L + L + A Q +DD+
Sbjct: 647 KKKEDLFESTLGDSEEAVVQKLGEDDI 673
Score = 62.4 bits (150), Expect = 3e-09
Identities = 47/184 (25%), Positives = 85/184 (45%), Gaps = 23/184 (12%)
Query: 313 IKGCLLADEMGLGKXXXXXXXXXXXXKQTPYPTIINQRGVTLAGE---ISKVLIVCPVTL 369
++G +LADEMG+GK ++ +R V A + L++ P
Sbjct: 153 VRGGILADEMGMGKTIQAISL------------VLARREVDRAKSREAVGHTLVLVPPVA 200
Query: 370 IGNWKKEFKKWLPMNRIGVLTLHSRNSPTEDK--AQVRSFLKVPRTYQVLIVGYEKLLSI 427
+ W E + VL H P DK ++ ++ V T ++ Y K +
Sbjct: 201 LSQWLDEISRLTSPGSTRVLQYHG---PKRDKNVQKLMNYDFVLTTSPIVENEYRKDEGV 257
Query: 428 KDELQNEKRNL--DLVICDEGHRLKNKDSKILKVLQSLDIEKKIVLSGTPIQNDLEEFYT 485
DE + ++ + +I DE H +KN+ S+ K + +L+ + LSGTP+QND++E Y+
Sbjct: 258 -DETMSPLHSIKWNRIIVDEAHDIKNRSSRTAKAVFALEATYRWALSGTPLQNDVDELYS 316
Query: 486 IIDF 489
++ +
Sbjct: 317 LVSY 320
>At3g20010 [KL] KOG1001 Helicase-like transcription factor HLTF/DNA helicase
RAD5 DEAD-box superfamily
Length = 1047
Score = 92.0 bits (227), Expect = 4e-18
Identities = 43/120 (35%), Positives = 70/120 (57%)
Query: 654 KVVVISNYTQTLDIIEGHCSSEGYTSARLDGSTATKTRDQIVTSFNNDPSIFVFLLSAKS 713
K ++ S +T LD++E G RLDG+ + RD+ V F+ P + V L+S K+
Sbjct: 894 KTIIFSQWTGMLDLVELRILESGIEFRRLDGTMSLAARDRAVKEFSKKPDVKVMLMSLKA 953
Query: 714 GGVGLNLIGASRLVLFDNDWNPSIDLQAMSRIHRDGQRRPCFIYRLVTTGCIDEKILQRQ 773
G +GLN++ A ++L D WNP+ + QA+ R HR GQ RP + R+ ++++IL+ Q
Sbjct: 954 GNLGLNMVAACHVILLDLWWNPTTEDQAIDRAHRIGQTRPVTVTRITIKDTVEDRILKLQ 1013
>Hs21071052 [KL] KOG1001 Helicase-like transcription factor HLTF/DNA helicase
RAD5 DEAD-box superfamily
Length = 1009
Score = 91.7 bits (226), Expect = 5e-18
Identities = 58/176 (32%), Positives = 92/176 (51%), Gaps = 7/176 (3%)
Query: 637 LRILLSLLHELKTKTDE-KVVVISNYTQTLDIIEGHCSSEGYTSARLDGSTATKTRDQIV 695
+ L+ L +L+ K K +V+S +T L +IE + G+ RLDGS A K R + +
Sbjct: 835 INALMHALTDLRKKNPNIKSLVVSQFTTFLSLIEIPLKASGFVFTRLDGSMAQKKRVESI 894
Query: 696 TSFNNDP--SIFVFLLSAKSGGVGLNLIGASRLVLFDNDWNPSIDLQAMSRIHRDGQRRP 753
F N S + LLS K+GGVGLNL ASR+ L D WNP+ + Q R HR GQ++
Sbjct: 895 QCFQNTEAGSPTIMLLSLKAGGVGLNLSAASRVFLMDPAWNPAAEDQCFDRCHRLGQKQE 954
Query: 754 CFIYRLVTTGCIDEKILQRQLMKIALSKKFLDSATDQSKNDDDLFQQEELKDLFTI 809
I + + ++E +L+ Q K ++ A K + D +Q ++ ++ T+
Sbjct: 955 VIITKFIVKDSVEENMLKIQNKK----RELAAGAFGTKKPNADEMKQAKINEIRTL 1006
Score = 64.3 bits (155), Expect = 8e-10
Identities = 58/258 (22%), Positives = 112/258 (42%), Gaps = 23/258 (8%)
Query: 362 LIVCPVTLIGNWKKEFKKWLPMNRIGVLTLHSRNSPTEDKAQVRSFLKVPRTYQVLIVGY 421
LI+CP++++ NW +F + + + ++ + A + V TY +L Y
Sbjct: 479 LIICPLSVLSNWIDQFGQHIKSDVHLNFYVYYGPDRIREPALLSKQDIVLTTYNILTHDY 538
Query: 422 EKLLSIKDELQNEKRNLDLVICDEGHRLKNKDSKILKVLQSLDIEKKIVLSGTPIQNDLE 481
K + VI DEGH ++N +++ K + L+ E++ VL+GTPIQN L+
Sbjct: 539 ----GTKGDSPLHSIRWLRVILDEGHAIRNPNAQQTKAVLDLESERRWVLTGTPIQNSLK 594
Query: 482 EFYTIIDFINPGILGSFGRFKREYILPIARSRDVNAKQNQTLVEQGLLRSDQLIEITKRF 541
+ ++++ F+ + R P+ + ++ Q+L++ LR + +I +
Sbjct: 595 DLWSLLSFLKLKPFIDREWWHRTIQRPVTMGDEGGLRRLQSLIKNITLRRTKTSKIKGKP 654
Query: 542 ILRRTNEILQQYLPPRTDLIIFCKPTAEQVEAFHKILTEGQLNFSNMTFNSS-------- 593
+L LP R I + E+ + + + EG+ FN
Sbjct: 655 VLE---------LPERKVFIQHITLSDEERKIYQSVKNEGRATIGRY-FNEGTVLAHYAD 704
Query: 594 -LGLITLFKKICNSTRLI 610
LGL+ ++IC T L+
Sbjct: 705 VLGLLLRLRQICCHTYLL 722
>At1g61140 [KL] KOG1001 Helicase-like transcription factor HLTF/DNA helicase
RAD5 DEAD-box superfamily
Length = 1287
Score = 89.7 bits (221), Expect = 2e-17
Identities = 43/124 (34%), Positives = 70/124 (55%)
Query: 653 EKVVVISNYTQTLDIIEGHCSSEGYTSARLDGSTATKTRDQIVTSFNNDPSIFVFLLSAK 712
EK +V S +T+ L+++E S RLDG+ + RD+ V FN P + V ++S K
Sbjct: 1131 EKAIVFSQWTKMLNLLEASLVSSHIQYRRLDGTMSVAARDKAVQDFNTLPEVTVMIMSLK 1190
Query: 713 SGGVGLNLIGASRLVLFDNDWNPSIDLQAMSRIHRDGQRRPCFIYRLVTTGCIDEKILQR 772
+ +GLN++ A +++ D WNP+ + QA+ R HR GQ RP + R ++++IL
Sbjct: 1191 AASLGLNMVAACHVLMLDLWWNPTTEDQAIDRAHRIGQTRPVTVVRFTVKDTVEDRILAL 1250
Query: 773 QLMK 776
Q K
Sbjct: 1251 QQKK 1254
>7296909 [B] KOG1000 Chromatin remodeling protein HARP/SMARCAL1 DEAD-box
superfamily
Length = 701
Score = 89.4 bits (220), Expect = 2e-17
Identities = 123/531 (23%), Positives = 196/531 (36%), Gaps = 104/531 (19%)
Query: 270 VDPLLSKTLRPHQREGVKFLYDCVMNMVHTKGDESMILERDDDIKGCLLADEMGLGKXXX 329
++P L+ L P Q++GV F + KG ++ DEMGLGK
Sbjct: 239 IEPKLADQLMPFQQDGVCFA-------IAQKGR-------------IMICDEMGLGKTYQ 278
Query: 330 XXXXXXXXXKQTPYPTIINQRGVTLAGEISKVLIVCPVTLI-GNWKKEFKKWLPMNRIGV 388
P L+VC +W K LP I
Sbjct: 279 ALAVADYFKDDWP-------------------LLVCTTASTRDSWAKHIMDLLPKVPIHY 319
Query: 389 LTLHSRNSPTEDKAQVRSFLKVPRTYQVLIVGYEKLLSIKDELQNEKRNLDLVICDEGHR 448
+ + + N +A+V LI Y + +D+L +R +I DE H
Sbjct: 320 VQVLNNNQLYVGEAKV------------LITSYNMMERHEDKLM--QRKFGFIIFDESHT 365
Query: 449 LKNKDSKILKVLQSLDIEKK--IVLSGTPIQNDLEEFYTIIDFINPGILGSFGRFKREYI 506
LKN +K + L + K ++LSGTP + E +T + I+ G +F F Y
Sbjct: 366 LKNSKAKCTTTAKRLTDQAKRVVLLSGTPALSRPLELFTQLQMID-GKFMNFMEFTTRYC 424
Query: 507 LPIARSRDVNAKQNQTLVEQGLLRSDQLIEITKRFILRRTN-EILQQYLPPRTDLIIFCK 565
+ +A L E ++ + +++LRRT E+L Q + ++
Sbjct: 425 DGKQSTFGWDANGQSNLEELKVI-------LHLKYMLRRTKVEVLPQLAEKNRETVVL-- 475
Query: 566 PTAEQVEAFHKILTEGQLNFSNMTFNSSLGLIT--LFKKICNSTRLIKTDPYYEERLSQV 623
+ + T+ L+ N ++ G T + + T +KT
Sbjct: 476 ---DPALVWTNAETKETLDAFNKELKTAKGRATEEILLRFYARTAEVKT----------- 521
Query: 624 QXXXXXXXXXXXXLRILLSLLHELKTKTDEKVVVISNYTQTLDIIEGHCSSEGYTSARLD 683
R + + L L K +K ++ +++ +D I S R+D
Sbjct: 522 --------------RAVCAYLKTL-VKEQKKFIIFAHHRVMMDAISDFLSGLKVHYIRID 566
Query: 684 GSTATKTRDQIVTSFNNDPSIFVFLLSAKSGGVGLNLIGASRLVLFDNDWNPSIDLQAMS 743
G T + R V +F S V LLS K+ G+ L A +V + DWNPS QA S
Sbjct: 567 GQTRSDHRSDSVDTFQKKSSCKVALLSLKACNSGITLTAAEIIVFAELDWNPSTLAQAES 626
Query: 744 RIHRDGQRRPCFIYRLVTTGCIDE------KILQRQLMKIALSKKFLDSAT 788
R HR GQ +P L+ D+ K Q L K+ + + L AT
Sbjct: 627 RAHRIGQTKPVICRYLIAHNTADDIIWNMLKNKQEVLSKVGIFAENLQKAT 677
>CE11450 [KL] KOG4439 RNA polymerase II transcription termination factor
TTF2/lodestar DEAD-box superfamily
Length = 518
Score = 87.0 bits (214), Expect = 1e-16
Identities = 50/129 (38%), Positives = 75/129 (57%), Gaps = 6/129 (4%)
Query: 666 DIIEGHCSSEGYTSARLDGSTATKTRDQIVTSFNNDPS-IFVFLLSAKSGGVGLNLIGAS 724
DI EG GYTS + G A K R + V SFN + LLS +GGVGLNLIG +
Sbjct: 374 DIQEG---GHGYTS--ITGEVAIKDRQERVDSFNQEKGGAQDMLLSLTAGGVGLNLIGGN 428
Query: 725 RLVLFDNDWNPSIDLQAMSRIHRDGQRRPCFIYRLVTTGCIDEKILQRQLMKIALSKKFL 784
L++ D WNP+++ QA RI+R GQ++ I+RL+ I+++++ Q K+AL+ L
Sbjct: 429 HLIMVDLHWNPALEQQACDRIYRMGQKKEVHIHRLIVKETIEQRVMSLQEKKLALAASVL 488
Query: 785 DSATDQSKN 793
+ + + N
Sbjct: 489 EGSATRGMN 497
>Hs15805014 [R] KOG0391 SNF2 family DNA-dependent ATPase
Length = 3124
Score = 84.3 bits (207), Expect = 8e-16
Identities = 48/135 (35%), Positives = 78/135 (57%), Gaps = 1/135 (0%)
Query: 637 LRILLSLLHELKTKTDEKVVVISNYTQTLDIIEGHCSSEGYTSARLDGSTATKTRDQIVT 696
L L LL +LK++ +V+++S LDI+E + T R+D + +++ R +++
Sbjct: 1864 LEALAILLQKLKSE-GRRVLILSQMILMLDILEMFLNFHYLTYVRIDENASSEQRQELMR 1922
Query: 697 SFNNDPSIFVFLLSAKSGGVGLNLIGASRLVLFDNDWNPSIDLQAMSRIHRDGQRRPCFI 756
SFN D IF +LS S G+NL+ A +V +DND NP +D +A R G+ + I
Sbjct: 1923 SFNRDRRIFCAILSTHSRTTGINLVEADTVVFYDNDLNPVMDAKAQEWCDRIGRCKDIHI 1982
Query: 757 YRLVTTGCIDEKILQ 771
YRLV+ I+EK+L+
Sbjct: 1983 YRLVSGNSIEEKLLK 1997
Score = 63.9 bits (154), Expect = 1e-09
Identities = 64/297 (21%), Positives = 128/297 (42%), Gaps = 36/297 (12%)
Query: 317 LLADEMGLGKXXXXXXXXXXXXKQTPYPTIINQRGVTLAGEISKVLIVCPVTLIGNWKKE 376
+LADE GLGK G L+V I W+ E
Sbjct: 1077 ILADEAGLGKTVQIIAFFAHLACNE--------------GNWGPHLVVVRSCNILKWELE 1122
Query: 377 FKKWLPMNRIGVLTLHSRNSPTEDKAQVRSFLKVPRTYQVLIVGYEKLLSIKDELQNEKR 436
K+W P G+ L S E KA+ + + + P ++ V I Y + + +
Sbjct: 1123 LKRWCP----GLKILSYIGSHRELKAKRQEWAE-PNSFHVCITSYTQFF--RGLTAFTRV 1175
Query: 437 NLDLVICDEGHRLKNKDSKILKVLQSLDIEKKIVLSGTPIQNDLEEFYTIIDFINPGILG 496
++ DE R+K + + + +L +++++L +P+ N E +T++ F+ PGI
Sbjct: 1176 RWKCLVIDEMQRVKGMTERHWEAVFTLQSQQRLLLIDSPLHNTFLELWTMVHFLVPGI-- 1233
Query: 497 SFGRFKREYILPIARSRDVNAKQNQTLVEQGLLRSDQLIEITKRFILRRTNEILQQYLPP 556
R Y+ R+ ++++Q + ++R L +T+ FILRRT +++ L
Sbjct: 1234 -----SRPYLSSPLRAP---SEESQDYYHKVVIR---LHRVTQPFILRRTKRDVEKQLTK 1282
Query: 557 RTDLIIFCKPTAEQVEAFHKILTE--GQLNFSNMTFNSSLGLITLFKKICNSTRLIK 611
+ + ++ C+ + Q + ++ + Q + F + L ++ ++ICN L++
Sbjct: 1283 KYEHVLKCRLSNRQKALYEDVILQPGTQEALKSGHFVNVLSILVRLQRICNHPGLVE 1339
>SPCC1620.14c [BK] KOG0386 Chromatin remodeling complex SWI/SNF component SWI2
and related ATPases (DNA/RNA helicase superfamily)
Length = 430
Score = 80.1 bits (196), Expect = 1e-14
Identities = 38/90 (42%), Positives = 56/90 (62%)
Query: 704 IFVFLLSAKSGGVGLNLIGASRLVLFDNDWNPSIDLQAMSRIHRDGQRRPCFIYRLVTTG 763
+++F+LS ++GG+GLNL A +++FD DWNP DLQA R HR GQ + I RL+T
Sbjct: 6 VYIFMLSTRAGGLGLNLQTADTVIIFDTDWNPHQDLQAQDRAHRIGQTKEVRILRLITEK 65
Query: 764 CIDEKILQRQLMKIALSKKFLDSATDQSKN 793
I+E IL R K+ L K + + +K+
Sbjct: 66 SIEENILSRAQYKLDLDGKVIQAGKFDNKS 95
>YLR032w [KL] KOG1001 Helicase-like transcription factor HLTF/DNA helicase
RAD5 DEAD-box superfamily
Length = 1169
Score = 77.4 bits (189), Expect = 9e-14
Identities = 57/178 (32%), Positives = 92/178 (51%), Gaps = 15/178 (8%)
Query: 640 LLSLLHELKTKTD----EKVVVISNYTQTLDIIEG---HCSSEGYTSA-RLDGSTATKTR 691
+ +LL EL+ D E+VV+ S ++ LDI+E H S+ + DG + K R
Sbjct: 996 ITALLKELQLLQDSSAGEQVVIFSQFSTYLDILEKELTHTFSKDVAKIYKFDGRLSLKER 1055
Query: 692 DQIVTSF--NNDPSIFVFLLSAKSGGVGLNLIGASRLVLFDNDWNPSIDLQAMSRIHRDG 749
++ F + + LLS K+GGVGLNL AS + D W+PS++ QA+ R+HR G
Sbjct: 1056 TSVLADFAVKDYSRQKILLLSLKAGGVGLNLTCASHAYMMDPWWSPSMEDQAIDRLHRIG 1115
Query: 750 QRRPCFIYRLVTTGCIDEKILQRQLMKIALSKKFLDSATDQSKNDDDLFQQEELKDLF 807
Q + R + I+EK+L +I K+ + A D +++ + EE++ LF
Sbjct: 1116 QTNSVKVMRFIIQDSIEEKML-----RIQEKKRTIGEAMDTDEDERRKRRIEEIQMLF 1168
>YOR191w [KL] KOG1001 Helicase-like transcription factor HLTF/DNA helicase
RAD5 DEAD-box superfamily
Length = 1619
Score = 75.1 bits (183), Expect = 5e-13
Identities = 45/160 (28%), Positives = 82/160 (51%), Gaps = 6/160 (3%)
Query: 653 EKVVVISNYTQTLDIIEGHCSSE-GYTSARLDGSTATKTRDQIVTSFNNDPSIFVFLLSA 711
EK+++ S +T +I+E ++ + + GS + R ++ F DP + L+S
Sbjct: 1462 EKIIIFSQFTTFFEILEHFLKNKLNFPYLKYIGSMNAQRRSDVINEFYRDPEKRILLISM 1521
Query: 712 KSGGVGLNLIGASRLVLFDNDWNPSIDLQAMSRIHRDGQRRPCFIYRLVTTGCIDEKILQ 771
K+G GL L A+ +V+ D WNP ++ QA R +R Q + +++L ++++I +
Sbjct: 1522 KAGNSGLTLTCANHVVIVDPFWNPYVEEQAQDRCYRISQTKKVQVHKLFIKDSVEDRISE 1581
Query: 772 RQLMKIALSKKFLDSATDQSK-NDDDLFQQEELKDLFTIN 810
Q K K+ +DSA D K + + + EL LF +N
Sbjct: 1582 LQKRK----KEMVDSAMDPGKIKEVNSLGRRELGFLFGLN 1617
>SPAC144.05 [L] KOG0298 DEAD box-containing helicase-like transcription
factor/DNA repair protein
Length = 1375
Score = 73.2 bits (178), Expect = 2e-12
Identities = 54/182 (29%), Positives = 86/182 (46%), Gaps = 15/182 (8%)
Query: 645 HELKTKTDE---KVVVISNYTQTLDIIEGHCSSEGYTSARLDGSTATKTRDQIVTSFNND 701
H L K +E KVVV S + LD++ + G R DG K+++ + F +
Sbjct: 1194 HLLYLKHNELYPKVVVFSQWLDVLDVLHKSFEANGIVFIRFDG----KSKNTCLKRFKEE 1249
Query: 702 PSIFVFLLSAKSGGVGLNLIGASRLVLFDNDWNPSIDLQAMSRIHRDGQRRPCFIYRLVT 761
S+ V L A+S GL L A+ + + + N I++QA+SR+HR GQ RP F+Y +
Sbjct: 1250 RSLQVLTLHARSQSSGLTLTNATHVFMCEPLLNSGIEMQAISRVHRIGQTRPTFVYYYIV 1309
Query: 762 TGCIDEKILQRQLMK-IALSKKFLD-------SATDQSKNDDDLFQQEELKDLFTINLST 813
++ IL L K L K LD + T ++ + + E+KD + L
Sbjct: 1310 EDTVEGHILNLSLTKHEQLDKLGLDVPLVGNINRTTEASSGGEQVDAAEIKDCLKMALKR 1369
Query: 814 LS 815
L+
Sbjct: 1370 LT 1371
>SPAC13G6.01c [KL] KOG1001 Helicase-like transcription factor HLTF/DNA helicase
RAD5 DEAD-box superfamily
Length = 104
Score = 73.2 bits (178), Expect = 2e-12
Identities = 38/107 (35%), Positives = 61/107 (56%), Gaps = 5/107 (4%)
Query: 701 DPSIFVFLLSAKSGGVGLNLIGASRLVLFDNDWNPSIDLQAMSRIHRDGQRRPCFIYRLV 760
DP + V ++S K+GGVGLNL A+ + + D W+ S++ QA+ RIHR GQ +P F+ R +
Sbjct: 1 DPDVNVLIISLKAGGVGLNLTCANHVFIMDPWWSWSVEAQAIDRIHRLGQEKPVFVTRYI 60
Query: 761 TTGCIDEKILQRQLMKIALSKKFLDSATDQSKNDDDLFQQEELKDLF 807
++E++L KI K F+ S+ + E++K LF
Sbjct: 61 VRDTVEERML-----KIQERKNFITGTLGMSEGKQQVQSIEDIKMLF 102
>Hs4757978 [K] KOG0385 Chromatin remodeling complex WSTF-ISWI small subunit
Length = 220
Score = 73.2 bits (178), Expect = 2e-12
Identities = 52/197 (26%), Positives = 90/197 (45%), Gaps = 27/197 (13%)
Query: 301 GDESMILERDDDIKGCLLADEMGLGKXXXXXXXXXXXXKQTPYPTIINQRGVTLAGEISK 360
G + + +R GC+L DEMGLGK + LAG ++
Sbjct: 14 GGSNWLAQRFHCQNGCILGDEMGLGKTCQTIALF-----------------IYLAGRLND 56
Query: 361 ---VLIVCPVTLIGNWKKEFKKWLPMNRIGVLTLHSRNSPTEDKAQVRSFLKVPRTYQVL 417
LI+CP ++ + + + + S E++A ++ LK + VL
Sbjct: 57 EGPFLILCPYVCFEQLERRNAEICSRSFLCNIC-----SDKEERACLQQDLKQESRFHVL 111
Query: 418 IVGYEKLLSIKDELQNEKRNLDLVICDEGHRLKNKDSKILKVLQSLDIEKKIVLSGTPIQ 477
+ YE + +KD + +++ DE HRLKN+ S + K L + ++L+GTPIQ
Sbjct: 112 LTTYE--ICLKDASFLKSFPWSVLVVDEAHRLKNQSSLLHKTLSEFSVVFSLLLTGTPIQ 169
Query: 478 NDLEEFYTIIDFINPGI 494
N L+E Y+++ F+ P +
Sbjct: 170 NSLQELYSLLSFVEPDL 186
>At1g48310 [B] KOG1000 Chromatin remodeling protein HARP/SMARCAL1 DEAD-box
superfamily
Length = 675
Score = 73.2 bits (178), Expect = 2e-12
Identities = 76/339 (22%), Positives = 140/339 (40%), Gaps = 29/339 (8%)
Query: 440 LVICDEGHRLKNKDSKILKVLQSLDIEKK----IVLSGTPIQNDLEEFYTIIDFINPGIL 495
+VI DE H LKN +K + L + KK I+LSGTP + E + ++ + P +
Sbjct: 321 VVIADESHFLKNGQAK--RTSACLPVIKKAQYAILLSGTPALSRPIELFKQLEALYPDVY 378
Query: 496 GSFGRFKREYILPIARSRDVNAKQNQTL----VEQGLLRSDQLIEITKRFIL-RRTNEIL 550
+ + Y ++ ++ QG D+L + K ++ RR + +
Sbjct: 379 RNIHEYGGRYCKGVSPLHIEKLPRSSYKGFFGTYQGASNHDELHNLMKATVMIRRLKKDV 438
Query: 551 QQYLPPRTDLIIFCKPTAEQVEAFHKILTEGQLNFSNMTFNSSLGLITLFKKICNSTRLI 610
LP + +F A+ ++ + + E ++ S + K C S I
Sbjct: 439 LTELPSKRRQQVFLDLAAKDMKQINALFHELKVVKSKI-------------KDCISEDDI 485
Query: 611 KTDPYYEERLSQVQXXXXXXXXXXXXLRILLSLLHELKTKTDEKVVVISNYTQTLDIIEG 670
K+ + E+ L L L +++ + K +V +++ L+ +
Sbjct: 486 KSLKFIEKNLINKIYTDSAVAKIPAVLDYLENVI-----EAGCKFLVFAHHQSMLEELHQ 540
Query: 671 HCSSEGYTSARLDGSTATKTRDQIVTSFNNDPSIFVFLLSAKSGGVGLNLIGASRLVLFD 730
+ R+DGST +R +V+ F + I +LS ++ GVG+ L AS ++ +
Sbjct: 541 FLKKKKVGCIRIDGSTPASSRQALVSDFQDKDEIKAAVLSIRAAGVGITLTAASTVIFAE 600
Query: 731 NDWNPSIDLQAMSRIHRDGQRRPCFIYRLVTTGCIDEKI 769
W P +QA R HR GQ I+ L+ +D+ I
Sbjct: 601 LSWTPGDLIQAEDRAHRIGQVSSVNIHYLLANDTVDDII 639
>7300511 [L] KOG0388 SNF2 family DNA-dependent ATPase
Length = 1477
Score = 73.2 bits (178), Expect = 2e-12
Identities = 75/315 (23%), Positives = 134/315 (41%), Gaps = 59/315 (18%)
Query: 310 DDDIKGCLLADEMGLGKXXXXXXXXXXXXKQTPYPTIINQRGVTLAGEISKVLIVCPVTL 369
D I G +LADEMGLGK I GV V +
Sbjct: 551 DQGISG-ILADEMGLGKTVQSIAFLCH---------IAEHYGV----------FVPDFKV 590
Query: 370 IGNWKKEFKKWLPMNRIGVLTLHSRNSPTEDKAQVRSFLKVPRTYQVLIVGYEKLLSIKD 429
+ W ++ + LH+R++ SF V +YQ+++ Y+ IK
Sbjct: 591 VPYWGSPAERKILRQFWDQKHLHTRDA---------SFHVVITSYQLVVSDYKYFNRIKW 641
Query: 430 ELQNEKRNLDLVICDEGHRLKNKDSKILKVLQSLDIEKKIVLSGTPIQNDLEEFYTIIDF 489
+ ++ DE +K+ S+ K+L +++LSGTPIQN + E + ++ F
Sbjct: 642 QY---------MVLDEAQAIKSAASQRWKLLLGFSCRNRLLLSGTPIQNSMAELWALLHF 692
Query: 490 INPGILGSFGRFKREYILPIARSRDVNA-KQNQTLVEQGLLRSDQLIEITKRFILRRTNE 548
I P + S F + S+D+ + +N+T +++ + +L I K F+LRR +
Sbjct: 693 IMPTLFDSHDEFNEWF------SKDIESHAENKTGIDEKQI--SRLHMILKPFMLRRIKK 744
Query: 549 ILQQYLPPRTDLIIFCKPTAEQVEAFHKI-----------LTEGQLNFSNMTFNSSL-GL 596
++ L + +++++C T Q + + LT G S+ + S+L L
Sbjct: 745 DVENELSDKIEIMVYCPLTIRQKLLYRALKQKIRIEDLLHLTSGSTTTSSSSSASNLMNL 804
Query: 597 ITLFKKICNSTRLIK 611
+ F+K+CN L +
Sbjct: 805 VMQFRKVCNHPELFE 819
Score = 58.5 bits (140), Expect = 5e-08
Identities = 35/103 (33%), Positives = 54/103 (51%), Gaps = 1/103 (0%)
Query: 637 LRILLSLLHELKTKTDEKVVVISNYTQTLDIIEGHCSSEGYTSARLDGSTATKTRDQIVT 696
L +L +LL LK +V++ S T+ +D++E + + RLDGS+ R +V
Sbjct: 1089 LFVLDNLLTRLKAN-GHRVLIYSQMTKMIDLLEEYMWHRKHRYMRLDGSSKISARRDMVA 1147
Query: 697 SFNNDPSIFVFLLSAKSGGVGLNLIGASRLVLFDNDWNPSIDL 739
F IFVFLLS ++GG+G+NL A L + P +L
Sbjct: 1148 DFQTRADIFVFLLSTRAGGLGINLTAADTLKSSVTPYRPKPNL 1190
>At2g40770 [L] KOG0298 DEAD box-containing helicase-like transcription
factor/DNA repair protein
Length = 1648
Score = 72.8 bits (177), Expect = 2e-12
Identities = 49/178 (27%), Positives = 87/178 (48%), Gaps = 16/178 (8%)
Query: 654 KVVVISNYTQTLDIIEGHCSSEGYTSARLDGSTATKTR-----------DQIVTSFNNDP 702
KV+V S++ LD++E ++ T R+ G ++T + + +
Sbjct: 1435 KVLVFSSWNDVLDVLEHAFAANSITCIRMKGGRKSQTAISKFKGSEKETQKTNSHQKEEK 1494
Query: 703 SIFVFLLSAKSGGVGLNLIGASRLVLFDNDWNPSIDLQAMSRIHRDGQRRPCFIYRLVTT 762
SI V LL + G GLNL+ A ++L + NP+ + QA+ R+HR GQ +P ++R + +
Sbjct: 1495 SIQVLLLLVQHGANGLNLLEAQHVILVEPLLNPAAEAQAVGRVHRIGQEKPTLVHRFLVS 1554
Query: 763 GCIDEKILQRQLMKIALSKKFLDSATDQSKNDDDLFQQEELKDLFTINLSTLSNTHDL 820
G ++E I + K F ++ +KN D F LKDL ++ S + T ++
Sbjct: 1555 GTVEESIYKLNRNKNTNLSSF---SSRNTKNQDQQFL--TLKDLESLFASPTAETAEM 1607
>At5g07810 [B] KOG1000 Chromatin remodeling protein HARP/SMARCAL1 DEAD-box
superfamily
Length = 1178
Score = 64.3 bits (155), Expect = 8e-10
Identities = 42/142 (29%), Positives = 68/142 (47%), Gaps = 8/142 (5%)
Query: 650 KTDEKVVVISNYTQTLDIIEGHCSSEGYTSARLDGSTATKTRDQIVTSFNNDPSIFVFLL 709
++ K+VV +++ + LD I+ +G R+DG+T + R V SF + + ++
Sbjct: 540 RSSTKMVVFAHHHKVLDGIQEFICDKGIGFVRIDGTTLPRDRQLAVQSFQFSSEVKIAII 599
Query: 710 SAKSGGVGLNLIGASRLVLFDNDWNPSIDLQAMSRIHRDGQRRPCFIYRLVTTGCIDEKI 769
++GGVGL+ A +V + PS+ LQA R HR GQ +Y +DE
Sbjct: 600 GVEAGGVGLDFSAAQNVVFLELPKTPSLLLQAEDRAHRRGQTSAVNVYIFCAKDTMDESN 659
Query: 770 LQRQLMKIALSKKF--LDSATD 789
Q L+KK + S TD
Sbjct: 660 WQN------LNKKLHRISSTTD 675
Score = 57.4 bits (137), Expect = 1e-07
Identities = 62/259 (23%), Positives = 105/259 (39%), Gaps = 59/259 (22%)
Query: 316 CLLADEMGLGKXXXXXXXXXXXXKQTPYPTIINQRGVTLAG---EISKVLIVCPVTLIGN 372
C +ADEMGLGK + + +AG +L+VCP L
Sbjct: 222 CFIADEMGLGKTL---------------------QAIAIAGCFISEGSILVVCPAVLRFT 260
Query: 373 WKKEFKKWLPM---NRIGVLTLHSRNSPTEDKAQVRSFLKVPRTYQVLIVGYEKLLSIKD 429
W +E ++WLP + + ++ H N +PR +V+++ Y+ L ++
Sbjct: 261 WAEELERWLPSCLPSDVHLVFGHQDNP-----------AYLPRWPKVVVISYKMLQHLRT 309
Query: 430 ELQNEKRNLDLVICDEGHRLK--NKDSKILKVLQSLDIEKK----IVLSGTPIQNDLEEF 483
+ +R L+I DE H L+ K S ++ LD+ +K I+LSGTP
Sbjct: 310 TML--EREWALLIVDESHHLRCSKKKSDPPEIKTVLDVAEKVKHIILLSGTP-------- 359
Query: 484 YTIIDFINPGILGSFGRFKREYILPIARSRDVNAKQNQTLVEQGLLRSDQLIEITKRFIL 543
PG+LG + + R + K Q +G + I + + ++
Sbjct: 360 ----SVSRPGLLGKDKYEFAKTYCEVGLVRGIQGKIFQDF-SKGTRLLELNILLNQTVMI 414
Query: 544 RRTNEILQQYLPPRTDLII 562
RR + L LPP+ I+
Sbjct: 415 RRLKQHLLTQLPPKRRQIV 433
>SPAC3G6.12 [L] KOG0388 SNF2 family DNA-dependent ATPase
Length = 1063
Score = 63.9 bits (154), Expect = 1e-09
Identities = 69/299 (23%), Positives = 122/299 (40%), Gaps = 45/299 (15%)
Query: 243 YSPLFDPVSIKDPLIMNKTENHKVSVIVDPLLSKTLRPHQREGVKFLYDCVMNMVHTKGD 302
+S LFD + P + N +P L Q + + C + KG
Sbjct: 795 HSQLFDANRQQSPNNSSSDMNEGEMNFQNPTLVNAFEVKQPK----MLMCKLKEYQLKGL 850
Query: 303 ESMILERDDDIKGCLLADEMGLGKXXXXXXXXXXXXKQTPYPTIINQRGVTLAGEISKV- 361
+ + I G +LADEMGLGK T+ + + E +
Sbjct: 851 NWLANLYEQGING-ILADEMGLGK------------------TVQSISVMAYLAETHNIW 891
Query: 362 ---LIVCPVTLIGNWKKEFKKWLPMNRIGVLTLHSRNSPTEDKAQVRSF-LKVPRTYQ-- 415
L++ P + + NW++E +++P L T+D+ +R F + TY
Sbjct: 892 GPFLVIAPASTLHNWQQEITRFVPK-----LKCIPYWGSTKDRKILRKFWCRKNMTYDEN 946
Query: 416 ----VLIVGYEKLLSIKDELQNEKRNLDLVICDEGHRLKNKDSKILKVLQSLDIEKKIVL 471
V++ Y+ ++ Q+ K +I DE +K+ S K L + +++L
Sbjct: 947 SPFHVVVTSYQLVVLDAQYFQSVK--WQYMILDEAQAIKSSSSSRWKSLLAFKCRNRLLL 1004
Query: 472 SGTPIQNDLEEFYTIIDFINPGILGSFGRFKREYILPIARSRDVNAKQNQTLVEQGLLR 530
+GTPIQN ++E + ++ FI P + S F + ++ + +A+ N L EQ L R
Sbjct: 1005 TGTPIQNTMQELWALLHFIMPSLFDSHNEFSEWF----SKDIESHAQSNTQLNEQQLKR 1059
>At3g16600 [KL] KOG1001 Helicase-like transcription factor HLTF/DNA helicase
RAD5 DEAD-box superfamily
Length = 638
Score = 63.5 bits (153), Expect = 1e-09
Identities = 40/109 (36%), Positives = 60/109 (54%), Gaps = 10/109 (9%)
Query: 683 DGSTATKTRDQIVTSFNNDPSIF----VFLLSAKSGGVGLNLIGASRLVLFDNDWNPSID 738
D S A + R Q S N D SI L+S K+G +GLN++ AS ++L D WNP+ +
Sbjct: 483 DSSVACRAR-QSRHSTNKDNSISGLVCAMLMSLKAGNLGLNMVAASHVILLDLWWNPTTE 541
Query: 739 LQAMSRIHRDGQRRPCFIYRLVTTGCIDEKIL-----QRQLMKIALSKK 782
QA+ R HR GQ R + R+ ++E+IL +R ++ AL +K
Sbjct: 542 DQAIDRAHRIGQTRAVTVTRIAIKNTVEERILTLHERKRNIVASALGEK 590
Score = 60.1 bits (144), Expect = 2e-08
Identities = 55/236 (23%), Positives = 99/236 (41%), Gaps = 26/236 (11%)
Query: 315 GCLLADEMGLGKXXXXXXXXXXXXKQTPYPTIINQRGVTLAGEISKVLIVCPVTLIGNWK 374
G +LAD+ GLGK K ++G G LIVCP +++ W
Sbjct: 76 GGILADDQGLGKTISTISLILLQ-KLKSQSKQRKRKGQNSGG----TLIVCPASVVKQWA 130
Query: 375 KEFKKWLPMNRIGVLTLHSRNSPTEDKAQVRSFLKVPRTYQVLI--VGYEKLLSIKDELQ 432
+E K+ + + +H + T+D ++ + V TY ++ V +L+ D ++
Sbjct: 131 REVKEKVSDEHKLSVLVHHGSHRTKDPTEIAIYDVVMTTYAIVTNEVPQNPMLNRYDSMR 190
Query: 433 NEKRNLD------------------LVICDEGHRLKNKDSKILKVLQSLDIEKKIVLSGT 474
+ +LD V+ DE H +KN + I K SL +++ L+GT
Sbjct: 191 G-RESLDGSSLIQPHVGALGRVRWLRVVLDEAHTIKNHRTLIAKACFSLRAKRRWCLTGT 249
Query: 475 PIQNDLEEFYTIIDFINPGILGSFGRFKREYILPIARSRDVNAKQNQTLVEQGLLR 530
PI+N +++ Y+ F+ F + PI + K+ Q ++ +LR
Sbjct: 250 PIKNKVDDLYSYFRFLRYHPYAMCNSFHQRIKAPIDKKPLHGYKKLQAILRGIMLR 305
>YLR247c [L] KOG0298 DEAD box-containing helicase-like transcription
factor/DNA repair protein
Length = 1556
Score = 63.2 bits (152), Expect = 2e-09
Identities = 50/185 (27%), Positives = 82/185 (44%), Gaps = 3/185 (1%)
Query: 641 LSLLHELKTKTDEKVVVISNYTQTLDIIEGHCSSEGYTSARLDGSTATKTRDQIVTSFNN 700
L L E + +V++ S T+ L +I Y L + T + + +F
Sbjct: 1368 LRLKSEQENADPPQVILYSQKTEYLKVIGKVLKL--YHIEHLACLSNTANVGETINNFKR 1425
Query: 701 DPSIFVFLLSAKSGGVGLNLIGASRLVLFDNDWNPSIDLQAMSRIHRDGQRRPCFIYRLV 760
PS+ LL+ K+ G GLNLI A + L D N S +LQAM R +R GQ F++ +
Sbjct: 1426 QPSVTCLLLNVKTLGAGLNLINAKHIFLLDPILNNSDELQAMGRNNRIGQDEETFVWNFM 1485
Query: 761 TTGCIDEKILQRQLMKIALSKKFLDSATDQSKNDDDLFQQEELKDL-FTINLSTLSNTHD 819
++E IL+ + + +K D+ D EE D F I++ +++
Sbjct: 1486 IRNTVEENILRYKCILEERKRKEKSKKGDKYDEAQDETDNEESDDAKFEISVVDQEVSNE 1545
Query: 820 LICNC 824
+ NC
Sbjct: 1546 HLWNC 1550
>Hs22054523 [L] KOG0298 DEAD box-containing helicase-like transcription
factor/DNA repair protein
Length = 1669
Score = 62.8 bits (151), Expect = 2e-09
Identities = 34/120 (28%), Positives = 65/120 (53%), Gaps = 3/120 (2%)
Query: 650 KTDEKVVVISNYTQTLDIIEGHCSSEGYTSARLDGSTATKTRDQIVTSFNNDPSIFVFLL 709
K +++ + + LDII + A++ + KT + +++F DP I + LL
Sbjct: 1536 KANQEEDIPVKWQDVLDIISKALTDNNMEFAQI---SRVKTFQENLSAFKRDPQINILLL 1592
Query: 710 SAKSGGVGLNLIGASRLVLFDNDWNPSIDLQAMSRIHRDGQRRPCFIYRLVTTGCIDEKI 769
+G GL +I A+ ++L + NP+ +LQA+ R+HR GQ +P ++R + I+E++
Sbjct: 1593 PLHTGSNGLTIIEATHVLLVEPILNPAHELQAIGRVHRIGQTKPTIVHRFLIKATIEERM 1652
>At2g25020 [L] KOG0390 DNA repair protein SNF2 family
Length = 476
Score = 59.7 bits (143), Expect = 2e-08
Identities = 58/240 (24%), Positives = 109/240 (45%), Gaps = 27/240 (11%)
Query: 359 SKVLIVCPVTLIGNWKKEFKKWLPMNRIGVLTLHSRNSPTEDKAQVRSFLKVPRTYQVLI 418
SK L V P ++ WK +F + L +N + +L +S + T + Q+ + +T ++
Sbjct: 237 SKPLFVLPKWVLNFWKTKFGE-LKVNDLVLLDFYSAKASTRSQ-QLEVLNRWIKTRSIIF 294
Query: 419 VGYEKLLSI---------KDELQNEKRNL-DLVICDEGHRLKNKDSKILKVLQSLDIEKK 468
+G ++ +I D ++ N+ +V+ D G +N+ LKV+ + K
Sbjct: 295 LGAKQFSNIISDNSGAEASDSCRDILLNIPSVVVFDRGTDPRNEMMSFLKVVARIKTPHK 354
Query: 469 IVLSGTPIQNDLEEFYTIIDFINPGIL--GSFGRFKREYILPIARSRDVNAKQNQ-TLVE 525
++L+G+ QN+++E + I+D + P L G+ R+++ A N K +E
Sbjct: 355 VLLTGSLYQNNIKEVFNILDVVFPEFLKHNRIGKNIRKFLNVEADGPSTNLKMPLFDKLE 414
Query: 526 QGLLRSD-----------QLIEITKRFILRRTNEILQQYLPPRTDLIIFCKPTAEQVEAF 574
+ LL D +L +T +FI E L + +P D + KPT Q A+
Sbjct: 415 EALLSQDSDHGDKISYLTELRMLTNKFIYNHKEEFLLE-VPGLMDFTVVLKPTLSQKSAW 473
>Hs20532976 [B] KOG1000 Chromatin remodeling protein HARP/SMARCAL1 DEAD-box
superfamily
Length = 293
Score = 57.8 bits (138), Expect = 8e-08
Identities = 31/86 (36%), Positives = 44/86 (51%)
Query: 681 RLDGSTATKTRDQIVTSFNNDPSIFVFLLSAKSGGVGLNLIGASRLVLFDNDWNPSIDLQ 740
R+DGS ++ R +V F DP V +LS ++ G GL AS +V + W+P Q
Sbjct: 115 RIDGSVSSSERIHLVNQFQKDPDTRVAILSIQAAGQGLTFTAASHVVFAELYWDPGHIKQ 174
Query: 741 AMSRIHRDGQRRPCFIYRLVTTGCID 766
A R HR GQ I+ L+ G +D
Sbjct: 175 AEDRAHRIGQCSSVNIHYLIANGTLD 200
>7295362 [L] KOG0298 DEAD box-containing helicase-like transcription
factor/DNA repair protein
Length = 1270
Score = 55.1 bits (131), Expect = 5e-07
Identities = 47/171 (27%), Positives = 77/171 (44%), Gaps = 14/171 (8%)
Query: 640 LLSLLHELKTKTD-EKVVVISNYTQTLDIIEGHCSSEGYTSARLDGSTATKTRDQIVTSF 698
++ L+ ++K + + EK++V S + L I S G + K D
Sbjct: 1110 VVELVLKIKGENEQEKIIVFSQWQAILIEIARALSLNGI---QFRNKCTNKDFDDFKNPL 1166
Query: 699 NNDPSIFVFLLSAKSGGVGLNLIGASRLVLFDNDWNPSIDLQAMSRIHRDGQRRPCFIYR 758
+N + L+ G GLNLI A+ + L + NP + QA+ RIHR GQ+RP ++R
Sbjct: 1167 SN---VTCLLMPLSKGSKGLNLIEATHVFLVEPILNPGDERQAIGRIHRFGQKRPTKVHR 1223
Query: 759 LVTTGCIDEKILQRQLMKIALSKKFLDSATDQSKNDDDLFQQEELKDLFTI 809
+ I+E IL +L D+ T + D + + LK LF +
Sbjct: 1224 FIVNETIEENIL-------SLITSADDTTTLSTHWDLENMTLDSLKKLFIL 1267
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.317 0.136 0.387
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,424,432
Number of Sequences: 60738
Number of extensions: 2192420
Number of successful extensions: 6639
Number of sequences better than 1.0e-05: 155
Number of HSP's better than 0.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 5805
Number of HSP's gapped (non-prelim): 329
length of query: 931
length of database: 30,389,216
effective HSP length: 116
effective length of query: 815
effective length of database: 23,343,608
effective search space: 19025040520
effective search space used: 19025040520
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)