ORF      STATUS       Function Best COG  Functional category                                          Pathways and functional systems
r_klactVI3097.1   suspect: Pn  PT    KOG2301   Inorganic ion transport and metabolism                         Voltage-gated Ca2+ channels, alpha1 subunits
r_klactVI3097.1   suspect: Pn  PT    KOG2301   Signal transduction mechanisms                                 Voltage-gated Ca2+ channels, alpha1 subunits

BLASTP 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= r_klactVI3097.1 1092997 1092851 -49  
         (49 letters)

Database: KOG eukaryal database 04/03 
           60,738 sequences; 30,389,216 total letters

Searching..................................................done

Color Key for Alignment Scores:   


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Hs4506813 [PT] KOG2301 Voltage-gated Ca2+ channels alpha1 subunits     27   7.0  
Hs22054465 [J] KOG0878 60S ribosomal protein L32                       27   7.0  
7296279 [U] KOG1983 Tomosyn and related SNARE-interacting proteins     26   9.1  

>Hs4506813 [PT] KOG2301 Voltage-gated Ca2+ channels alpha1 subunits
          Length = 1977

 Score = 26.6 bits (57), Expect = 7.0
 Identities = 11/19 (57%), Positives = 14/19 (72%)

Query: 2   STNGKYRRTRRSKKNQKRM 20
           S + K RR RR KKNQK++
Sbjct: 470 SKSAKERRNRRKKKNQKKL 488


>Hs22054465 [J] KOG0878 60S ribosomal protein L32
          Length = 108

 Score = 26.6 bits (57), Expect = 7.0
 Identities = 15/42 (35%), Positives = 21/42 (49%), Gaps = 6/42 (14%)

Query: 1  MSTNGKYRRTRRSKKNQKRMVPSGIEPLI------PALLARC 36
          M T    +RTR S    + M+PSG + L+      P +L RC
Sbjct: 23 MMTKILIKRTRSSSSTTEYMLPSGFQKLLVHPVKKPEVLLRC 64


>7296279 [U] KOG1983 Tomosyn and related SNARE-interacting proteins
          Length = 1161

 Score = 26.2 bits (56), Expect = 9.1
 Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 3/47 (6%)

Query: 6   KYRRTRRSKKNQKRMVPSGIE--PLIPALLARCLNQ-LGQGTNFLLF 49
           K R+ R ++ NQ   VP+ +E  P+   + ARC +  LG     LLF
Sbjct: 667 KLRKGRSTRTNQSNQVPTTLEARPVERQIEARCADDGLGSMVRCLLF 713


  Database: KOG eukaryal database 04/03
    Posted date:  Apr 14, 2003  1:07 PM
  Number of letters in database: 30,389,216
  Number of sequences in database:  60,738
  
Lambda     K      H
   0.323    0.138    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,981,975
Number of Sequences: 60738
Number of extensions: 82496
Number of successful extensions: 183
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 182
Number of HSP's gapped (non-prelim): 3
length of query: 49
length of database: 30,389,216
effective HSP length: 25
effective length of query: 24
effective length of database: 28,870,766
effective search space: 692898384
effective search space used: 692898384
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)