ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactVI3247 good J KOG4600 Translation, ribosomal structure and biogenesis Mitochondrial ribosomal protein MRP7 (L2)
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactVI3247 1141605 1140514 -364
(364 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YNL005c [J] KOG4600 Mitochondrial ribosomal protein MRP7 (L2) 324 1e-88
SPBP19A11.05c [J] KOG4600 Mitochondrial ribosomal protein MRP7 (L2) 107 2e-23
At5g40950 [J] KOG4600 Mitochondrial ribosomal protein MRP7 (L2) 84 3e-16
At5g15220 [J] KOG4600 Mitochondrial ribosomal protein MRP7 (L2) 83 7e-16
At2g16930 [J] KOG4600 Mitochondrial ribosomal protein MRP7 (L2) 83 7e-16
Hs7706057 [J] KOG4600 Mitochondrial ribosomal protein MRP7 (L2) 65 1e-10
>YNL005c [J] KOG4600 Mitochondrial ribosomal protein MRP7 (L2)
Length = 371
Score = 324 bits (830), Expect = 1e-88
Identities = 181/365 (49%), Positives = 227/365 (61%), Gaps = 7/365 (1%)
Query: 3 SSSWQQVPKFVVQQVRTATKRAAGSRTSMKDSAGRRLGPKKYEGQATQVGEIIMRQRGTK 62
S S+Q+ V QVR ATKRAAGSRTSMKDSAGRRLGPKKYEGQ GEIIMRQRGTK
Sbjct: 11 SFSFQKHVSGVFLQVRNATKRAAGSRTSMKDSAGRRLGPKKYEGQDVSTGEIIMRQRGTK 70
Query: 63 FYPGENVGIGKDHTLFALEPGYVRYYLDPFHPGKKFIGVSLYKDVKLPLPHFEPRLRRFG 122
FYPGENVGIGKDH++FALEPG VRYYLDPFHP +KFIGV+L +D+KLP PHFEP +RRFG
Sbjct: 71 FYPGENVGIGKDHSIFALEPGVVRYYLDPFHPKRKFIGVALRRDLKLPSPHFEPTVRRFG 130
Query: 123 XXXXXXXXXXXXXXNALPRKIYLLKDELXXXXXXXXXXXXXXXAEYSKIISDLKVELDQQ 182
N++ RK YL K + + SK++ D +++LD +
Sbjct: 131 RFELTNKRAAYKEENSISRKDYLAKPNILKQLEVRESKRKELQDKLSKVLRD-ELKLDIK 189
Query: 183 ELAFALPYLLRWRTCLKNGFNESDARFNSYYYLEQELKLKMRNQE--XXXXXXXXXXXXQ 240
++ A YL+R R LKNG+ DARFNS YYL++E +LK R + +
Sbjct: 190 DIELATSYLIRVRASLKNGYPIEDARFNSRYYLKEEERLKARRESWTNEKLSESLSKIDE 249
Query: 241 VSTKLNESLSFNNKLELTKYISPEEKNTLKTQLITDL-KAIDIKDKNSKKQVLAKFTDAK 299
S LN S SFNNKLEL +YIS +EK LK +L+ DL K+ ++ K K + A F DA
Sbjct: 250 CSDLLNSSTSFNNKLELHQYISEQEKQALKAKLLEDLEKSQHLETKKDKNYIKALFKDAC 309
Query: 300 NFLTLSEEVRLRRKFXXXXXXXXXXXXXXXXXXXXXXNLTTRRYNYEQNTIDVITRPKTD 359
NFLTLSEEV LRRK+ ++ +RR++Y +N ++VI R +
Sbjct: 310 NFLTLSEEVHLRRKY---LKSVFPETDSTVETKSGKKSIVSRRFDYTKNKVEVIARSRRA 366
Query: 360 FLSKL 364
FLSKL
Sbjct: 367 FLSKL 371
>SPBP19A11.05c [J] KOG4600 Mitochondrial ribosomal protein MRP7 (L2)
Length = 153
Score = 107 bits (268), Expect = 2e-23
Identities = 52/106 (49%), Positives = 74/106 (69%), Gaps = 2/106 (1%)
Query: 17 VRTATKRAAGSRTSMKDSAGRRLGPKKYEGQATQVGEIIMRQRGTKFYPGENVGIGKDHT 76
+RT+TK GS + DSAGRRLG K+ E Q + GEI++RQRGTKF+PG+N G+GKDHT
Sbjct: 34 IRTSTKHGGGSSKNTGDSAGRRLGIKRSENQFVRAGEILIRQRGTKFHPGDNTGLGKDHT 93
Query: 77 LFALEPGYVRYY-LD-PFHPGKKFIGVSLYKDVKLPLPHFEPRLRR 120
+++L GYV+++ +D +K++GV K+ LP P EP +RR
Sbjct: 94 IYSLVSGYVKFFQMDVSLRKRRKYVGVVFDKETTLPRPKDEPTIRR 139
>At5g40950 [J] KOG4600 Mitochondrial ribosomal protein MRP7 (L2)
Length = 198
Score = 84.0 bits (206), Expect = 3e-16
Identities = 43/85 (50%), Positives = 59/85 (68%), Gaps = 2/85 (2%)
Query: 17 VRTATKRAAGSRTSMKDSAGRRLGPKKYEGQATQVGEIIMRQRGTKFYPGENVGIGKDHT 76
+ +A K+ AGS + +DS G+RLG K Y Q + G II+RQRGTKF+ G+NVGIGKDHT
Sbjct: 56 IESAHKKGAGSTKNGRDSPGQRLGVKIYGDQVAKPGAIIVRQRGTKFHAGKNVGIGKDHT 115
Query: 77 LFALEPGYVRYYLDPFHPGKKFIGV 101
+F+L G V++ + F P +K I V
Sbjct: 116 IFSLIDGLVKF--EKFGPDRKKISV 138
>At5g15220 [J] KOG4600 Mitochondrial ribosomal protein MRP7 (L2)
Length = 162
Score = 82.8 bits (203), Expect = 7e-16
Identities = 44/84 (52%), Positives = 59/84 (69%), Gaps = 1/84 (1%)
Query: 18 RTATKRAAGSRTSMKDSAGRRLGPKKYEGQATQVGEIIMRQRGTKFYPGENVGIGKDHTL 77
R ATK+ AGS + +DS + LG KK+ G++ G II+RQRGT+F+PG+ VGIGKDHTL
Sbjct: 45 RWATKKTAGSTKNGRDSNPKFLGVKKFGGESVIPGNIIVRQRGTRFHPGDYVGIGKDHTL 104
Query: 78 FALEPGYVRYYLDPFHPGKKFIGV 101
FAL+ G VR+ G+K+I V
Sbjct: 105 FALKEGRVRFEKSKI-TGRKWIHV 127
>At2g16930 [J] KOG4600 Mitochondrial ribosomal protein MRP7 (L2)
Length = 147
Score = 82.8 bits (203), Expect = 7e-16
Identities = 44/84 (52%), Positives = 59/84 (69%), Gaps = 1/84 (1%)
Query: 18 RTATKRAAGSRTSMKDSAGRRLGPKKYEGQATQVGEIIMRQRGTKFYPGENVGIGKDHTL 77
R ATK+ AGS + +DS + LG KK+ G++ G II+RQRGT+F+PG+ VGIGKDHTL
Sbjct: 38 RWATKKTAGSTKNGRDSNPKFLGVKKFGGESVIPGNIIVRQRGTRFHPGDYVGIGKDHTL 97
Query: 78 FALEPGYVRYYLDPFHPGKKFIGV 101
FAL+ G VR+ G+K+I V
Sbjct: 98 FALKEGRVRFEKSKI-TGRKWIHV 120
>Hs7706057 [J] KOG4600 Mitochondrial ribosomal protein MRP7 (L2)
Length = 148
Score = 65.5 bits (158), Expect = 1e-10
Identities = 35/79 (44%), Positives = 50/79 (62%), Gaps = 1/79 (1%)
Query: 17 VRTATKRAAGSRTSMKD-SAGRRLGPKKYEGQATQVGEIIMRQRGTKFYPGENVGIGKDH 75
VR A+K++ GS ++ S+GRR G KK EG G II QR +++PG +VG+GK+
Sbjct: 28 VRYASKKSGGSSKNLGGKSSGRRQGIKKMEGHYVHAGNIIATQRHFRWHPGAHVGVGKNK 87
Query: 76 TLFALEPGYVRYYLDPFHP 94
L+ALE G VRY + + P
Sbjct: 88 CLYALEEGIVRYTKEVYVP 106
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.318 0.136 0.384
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,472,269
Number of Sequences: 60738
Number of extensions: 640315
Number of successful extensions: 1286
Number of sequences better than 1.0e-05: 6
Number of HSP's better than 0.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1275
Number of HSP's gapped (non-prelim): 6
length of query: 364
length of database: 30,389,216
effective HSP length: 108
effective length of query: 256
effective length of database: 23,829,512
effective search space: 6100355072
effective search space used: 6100355072
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)