ORF      STATUS       Function Best COG  Functional category                                          Pathways and functional systems
r_klactVI3252   suspect: LH   R     KOG3038  General function prediction only                               Histone acetyltransferase SAGA associated factor SGF29

BLASTP 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= r_klactVI3252 1142235  1142972 246  
         (246 letters)

Database: KOG eukaryal database 04/03 
           60,738 sequences; 30,389,216 total letters

Searching..................................................done

Color Key for Alignment Scores:   


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

YCL010c [R] KOG3038 Histone acetyltransferase SAGA associated fa...   214   9e-56
SPBC1921.07c [R] KOG3038 Histone acetyltransferase SAGA associat...   120   2e-27

>YCL010c [R] KOG3038 Histone acetyltransferase SAGA associated factor SGF29
          Length = 259

 Score =  214 bits (545), Expect = 9e-56
 Identities = 122/252 (48%), Positives = 153/252 (60%), Gaps = 19/252 (7%)

Query: 7   WGLAVTQLQDLYKIGDIAGF--ESLDPKXXXXXXXXXXXXADIHEKLEARQSVNEKMRNY 64
           W + V+ LQD+Y   ++  F  E    K              ++   E  ++VN ++   
Sbjct: 5   WDVVVSSLQDIYNANEVIPFDDELQTKKLNFLNMSKDQLQLHLNTFQEHMENVN-RVHRI 63

Query: 65  CRDLVENISYILDNY---PVEEEPILKEESSSTHIPESS------VVGRSHWTSQFNPSE 115
             ++  N+S +L+       EE     EE   T +  S        VGRS+WTS++NP+ 
Sbjct: 64  LDNVRSNLSLMLNQSREEKSEENTEDAEEGEGTRMALSQGKKAVGKVGRSYWTSEYNPNA 123

Query: 116 PIEVGSEVAYKSKK---TGEWIQCICTKVSGDGLRFEVKDPEPDEFGKPGGIFKCNSKEI 172
           PI VGSEVAYK ++    GEWIQC   KV  DG RFEV+DPEPDE G  G ++KCN KE+
Sbjct: 124 PILVGSEVAYKPRRGSADGEWIQCEVLKVVADGTRFEVRDPEPDELGNSGKVYKCNRKEL 183

Query: 173 LLIPPVTMKRTQTPNYPANTKVLARYPETTTFYPAIVCGSKRDGTCKLRFDGEEEIDKET 232
           LLIPP       T NYP  TKVLARYPETTTFYPAIV G+KRDGTC+LRFDGEEE+DKET
Sbjct: 184 LLIPP----GFPTKNYPPGTKVLARYPETTTFYPAIVIGTKRDGTCRLRFDGEEEVDKET 239

Query: 233 EVERRLVLPFPS 244
           EV RRLVLP P+
Sbjct: 240 EVTRRLVLPSPT 251


>SPBC1921.07c [R] KOG3038 Histone acetyltransferase SAGA associated factor SGF29
          Length = 116

 Score =  120 bits (301), Expect = 2e-27
 Identities = 63/114 (55%), Positives = 77/114 (67%), Gaps = 5/114 (4%)

Query: 131 GEWIQCICTKVSGDGL--RFEVKDPEPDEFGKPGGIFKCNSKEILLIPPVTMKRTQTPNY 188
           G+WIQCI  KV+G+G   RFEV+DPEPD+ G  G I+K  +  ++ IP    K T  P  
Sbjct: 4   GDWIQCIIIKVTGEGAKQRFEVQDPEPDDDGNAGQIYKTTANHLIQIPA---KGTPLPPI 60

Query: 189 PANTKVLARYPETTTFYPAIVCGSKRDGTCKLRFDGEEEIDKETEVERRLVLPF 242
              T VLARYPETTTFY A V  +  DG+CKLRF+GEEE+ KET VER LVL +
Sbjct: 61  SPKTNVLARYPETTTFYRAEVIRTLPDGSCKLRFEGEEEVGKETVVERHLVLEY 114


  Database: KOG eukaryal database 04/03
    Posted date:  Apr 14, 2003  1:07 PM
  Number of letters in database: 30,389,216
  Number of sequences in database:  60,738
  
Lambda     K      H
   0.314    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,819,374
Number of Sequences: 60738
Number of extensions: 701773
Number of successful extensions: 1311
Number of sequences better than 1.0e-05: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1304
Number of HSP's gapped (non-prelim): 2
length of query: 246
length of database: 30,389,216
effective HSP length: 104
effective length of query: 142
effective length of database: 24,072,464
effective search space: 3418289888
effective search space used: 3418289888
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)