ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactVI3370 good BT KOG2130 Chromatin structure and dynamics Phosphatidylserine-specific receptor PtdSerR, contains JmjC domain
r_klactVI3370 good BT KOG2130 Signal transduction mechanisms Phosphatidylserine-specific receptor PtdSerR, contains JmjC domain
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactVI3370 1182651 1180912 -580
(580 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
At5g06550 [BT] KOG2130 Phosphatidylserine-specific receptor PtdS... 173 6e-43
At1g78280 [BT] KOG2130 Phosphatidylserine-specific receptor PtdS... 157 3e-38
CE27146 [BT] KOG2130 Phosphatidylserine-specific receptor PtdSer... 129 2e-29
7300833 [BT] KOG2130 Phosphatidylserine-specific receptor PtdSer... 125 2e-28
Hs14769286 [BT] KOG2130 Phosphatidylserine-specific receptor Ptd... 122 1e-27
Hs12711670 [BT] KOG2131 Uncharacterized conserved protein contai... 67 7e-11
7298434 [BT] KOG2131 Uncharacterized conserved protein contains ... 67 7e-11
SPAC25H1.02 [BT] KOG2131 Uncharacterized conserved protein conta... 58 5e-08
Hs22055516 [B] KOG1633 F-box protein JEMMA and related proteins ... 50 9e-06
>At5g06550 [BT] KOG2130 Phosphatidylserine-specific receptor PtdSerR contains
JmjC domain
Length = 425
Score = 173 bits (439), Expect = 6e-43
Identities = 126/418 (30%), Positives = 198/418 (47%), Gaps = 59/418 (14%)
Query: 25 PTHPLGVKPSGNSLLEGADPQETXXXXXXXXGSLSVLPEDLIIEILAYIDDPNDLQNLGC 84
P+ GV+P GN G+L +L ++L+++IL + N L L
Sbjct: 54 PSQEHGVQPLGNLYFNPG----AVNVRNTGLGNLQILSDELVLDILGLLG-ANHLGVLAT 108
Query: 85 SSRILYAYTYDEELWRKIYTKEYLKLESESPEQERISPFGCSRWRGSWRKTILKV----- 139
++ Y + E LWR + +E LK G + GSWR T +
Sbjct: 109 VTKSFYIFANHEPLWRNLVLEE-LK--------------GDFLFNGSWRSTYVAAYHPKF 153
Query: 140 ----DQEALIQCHNILFSDTLYRPYQCSQIDYTELFKKVIEFETSSYELGTCLNTEFGVP 195
D E+ ++ + +SD L++ + C+ + E+ K + + + G ++ E +
Sbjct: 154 KFAGDGESNLKIIDF-YSDYLFQSWLCANL---EMKPKWLRRDNITRVRG--ISVEDFIT 207
Query: 196 RMQETEFDVATFHEEFINKPFILQNKDGITSEGKPRWPRWTLDDLVERYPHEIFRQEAVK 255
+ +E NKP +L+ +G P +W+ D L + F V+
Sbjct: 208 KFEEP------------NKPVLLEG----CLDGWPAIEKWSRDYLTKVVGDVEFAVGPVE 251
Query: 256 WDLSLYSYYFRENRDESPLYLFDCN-STALKLMSKEYAPPSIYHNDFFKLFQEKGIKCRP 314
L Y Y R+E PLYLFD + + ++ EY P + D F + + RP
Sbjct: 252 MKLEKYFRYSDGAREERPLYLFDPKFAEKVPVLDSEYDVPVYFREDLFGVLGNE----RP 307
Query: 315 DHRWLIAGPARSGSTFHKDPNHTSAWNTGLSGMKLWVMLPPGENPPGVMTDKEEEEVTSP 374
D+RW+I GPA SGS+FH DPN TSAWN ++G K WV+ PP PPGV + EV P
Sbjct: 308 DYRWIIIGPAGSGSSFHIDPNSTSAWNAVITGSKKWVLFPPDVVPPGVHPSPDGAEVACP 367
Query: 375 VGIAEWIISGYYNDAVKLAQEGRCQICVTFPGECIYVPSGWWHSVINLTDSVALTENF 432
V I EW ++ +Y+D E + C+ GE ++VP+GWWH VINL +S+A+T+N+
Sbjct: 368 VSIIEWFMN-FYDDTKD--WEKKPIECICKAGEVMFVPNGWWHLVINLEESIAITQNY 422
>At1g78280 [BT] KOG2130 Phosphatidylserine-specific receptor PtdSerR contains
JmjC domain
Length = 889
Score = 157 bits (398), Expect = 3e-38
Identities = 95/257 (36%), Positives = 135/257 (51%), Gaps = 27/257 (10%)
Query: 232 WPR---WTLDDLVERY---PHEIFRQEAVKWDLSLYSY--YFRENRDESPLYLFDCN-ST 282
WP WT+D L E+Y P I ++ K + Y Y + RDE PLY+FD
Sbjct: 130 WPASNTWTIDQLSEKYGEVPFRISQRSPNKISMKFKDYIAYMKTQRDEDPLYVFDDKFGE 189
Query: 283 ALKLMSKEYAPPSIYHNDFFKLFQEKGIKCRPDHRWLIAGPARSGSTFHKDPNHTSAWNT 342
A + K+Y+ P ++ D+F++ ++ RP +RWLI GP RSG+++H DP TSAWNT
Sbjct: 190 AAPELLKDYSVPHLFQEDWFEILDKES---RPPYRWLIVGPERSGASWHVDPALTSAWNT 246
Query: 343 GLSGMKLWVMLPPGENPPGVMTDKEEEE----VTSPVGIAEWIISGYYNDAVKLAQEGRC 398
L G K W + PPG+ P GV E+E + +P + W+ YY LA E +
Sbjct: 247 LLCGRKRWALYPPGKVPLGVTVHVNEDEGDVSIDTPSSLQWWL--DYY---PLLADEDKP 301
Query: 399 QICVTFPGECIYVPSGWWHSVINLTDSVALTENFVPEPIVPKVMNFFKNKPAQISGFHLK 458
C PGE IYVPSGWWH ++NL +VA+T+NFV + NF G+H K
Sbjct: 302 IECTLLPGETIYVPSGWWHCILNLEPTVAVTQNFVNKE------NFGFVCLDMAPGYHHK 355
Query: 459 DFVESVRVFLDTQERDD 475
+ + LD + +D
Sbjct: 356 GVCRAGLLALDDENSED 372
>CE27146 [BT] KOG2130 Phosphatidylserine-specific receptor PtdSerR contains
JmjC domain
Length = 400
Score = 129 bits (323), Expect = 2e-29
Identities = 80/249 (32%), Positives = 125/249 (50%), Gaps = 16/249 (6%)
Query: 194 VPRMQETEFDVATFHEEFINKPFILQNKDGITSEGKPRWPRWTLDDLVERYPHEIFR--- 250
+ R+ V F +F +P I G+T + +WT++ L ++Y ++ F+
Sbjct: 51 IQRVDGNNLTVEEFRRDF-ERPRIPVIITGLTDNWAAK-DKWTVERLSKKYRNQNFKCGE 108
Query: 251 ---QEAVKWDLSLYSYYFRENRDESPLYLFDCNSTA---LKLMSKEYAPPSIYHNDFFKL 304
+V+ + Y Y N+D+SPLY+FD + K +S++Y+ P + +D F
Sbjct: 109 DDNGNSVRMKMKYYHDYMLNNKDDSPLYIFDSSFAERRKTKKLSEDYSVPKFFEDDLFHY 168
Query: 305 FQEKGIKCRPDHRWLIAGPARSGSTFHKDPNHTSAWNTGLSGMKLWVMLPPGENPPGVMT 364
+K RP HRW + GPARSG+ H DP TSAWN+ L G K WV++PP P ++
Sbjct: 169 ADDKK---RPPHRWFVMGPARSGTAIHIDPLGTSAWNSLLQGHKRWVLIPP-IAPRDLVK 224
Query: 365 DKEEEEVTSPVGIAEWIISGYYN-DAVKLAQEGRCQICVTFPGECIYVPSGWWHSVINLT 423
E+ P W + Y + +E C PGE ++VPSGWWH VIN
Sbjct: 225 PMAHEKGKHPDEGITWFQTVYKRVRSPSWPKEYAPIECRQGPGETMFVPSGWWHVVINEE 284
Query: 424 DSVALTENF 432
++A+T N+
Sbjct: 285 YTIAVTHNY 293
>7300833 [BT] KOG2130 Phosphatidylserine-specific receptor PtdSerR contains
JmjC domain
Length = 408
Score = 125 bits (314), Expect = 2e-28
Identities = 85/265 (32%), Positives = 132/265 (49%), Gaps = 34/265 (12%)
Query: 196 RMQETEFDVATFHEEFIN--KPFILQNKDGITSEGKPRWPRWTLDDLVERYPHEIFR--- 250
R++E++ + F E F KP +++ ++G +WTL L ++Y ++ F+
Sbjct: 53 RIEESQVPESEFIERFERPYKPVVIRG----CTDGWLALEKWTLARLAKKYRNQKFKCGE 108
Query: 251 ---QEAVKWDLSLYSYYFRENRDESPLYLFDCN----STALKLMSKEYAPPSIYHNDFFK 303
+VK + Y Y + RD+SPLY+FD + KL+ +Y P + +D
Sbjct: 109 DNEGYSVKMKMKYYVEYMQSTRDDSPLYIFDSSFGEHHRRRKLLD-DYVVPKYFRDD--- 164
Query: 304 LFQEKGIKCRPDHRWLIAGPARSGSTFHKDPNHTSAWNTGLSGMKLWVMLPPGENPPGVM 363
LFQ G RP +RW + GPARSG+ H DP TSAWNT + G K W + P
Sbjct: 165 LFQYCGENRRPPYRWFVMGPARSGTGIHIDPLGTSAWNTLIRGHKRWCLFP-------TQ 217
Query: 364 TDKEEEEVTSPVG------IAEWIISGYYNDAV-KLAQEGRCQICVTFPGECIYVPSGWW 416
T KE +VTS +G W + Y + ++ R + GE ++VP GWW
Sbjct: 218 TPKELLKVTSAMGGKQRDEAITWFSTIYPRTQLPSWPEQYRPIEVLQGAGETVFVPGGWW 277
Query: 417 HSVINLTDSVALTENFVPEPIVPKV 441
H V+N+ D++A+T+NF + P V
Sbjct: 278 HVVLNMDDTIAITQNFSSQTNFPCV 302
>Hs14769286 [BT] KOG2130 Phosphatidylserine-specific receptor PtdSerR contains
JmjC domain
Length = 414
Score = 122 bits (307), Expect = 1e-27
Identities = 79/259 (30%), Positives = 118/259 (45%), Gaps = 18/259 (6%)
Query: 194 VPRMQETEFDVATFHEEFIN--KPFILQNKDGITSEGKPRWPRWTLDDLVERYPHEIFR- 250
V R + V F E + KP +L N EG +WTL+ L +Y ++ F+
Sbjct: 46 VERADALQLSVEEFVERYERPYKPVVLLN----AQEGWSAQEKWTLERLKRKYRNQKFKC 101
Query: 251 -----QEAVKWDLSLYSYYFRENRDESPLYLFDCN---STALKLMSKEYAPPSIYHNDFF 302
+VK + Y Y RD+SPLY+FD + + + ++Y P + +D
Sbjct: 102 GEDNDGYSVKMKMKYYIEYMESTRDDSPLYIFDSSYGEHPKRRKLLEDYKVPKFFTDD-- 159
Query: 303 KLFQEKGIKCRPDHRWLIAGPARSGSTFHKDPNHTSAWNTGLSGMKLWVMLPPGENPPGV 362
LFQ G K RP +RW + GP RSG+ H DP TSAWN + G K W + P +
Sbjct: 160 -LFQYAGEKRRPPYRWFVMGPPRSGTGIHIDPLGTSAWNALVQGHKRWCLFPTSTPRELI 218
Query: 363 MTDKEEEEVTSPVGIAEWIISGYYNDAVKLAQEGRCQICVTFPGECIYVPSGWWHSVINL 422
++E I + + E + + PGE ++VP GWWH V+NL
Sbjct: 219 KVTRDEGGNQQDEAITWFNVIYPRTQLPTWPPEFKPLEILQKPGETVFVPGGWWHVVLNL 278
Query: 423 TDSVALTENFVPEPIVPKV 441
++A+T+NF P V
Sbjct: 279 DTTIAITQNFASSTNFPVV 297
>Hs12711670 [BT] KOG2131 Uncharacterized conserved protein contains JmjC domain
Length = 463
Score = 67.0 bits (162), Expect = 7e-11
Identities = 40/122 (32%), Positives = 64/122 (51%), Gaps = 12/122 (9%)
Query: 315 DHRWLIAGPARSGSTFHKDPNHTSAWNTGLSGMKLWVMLPPGENPPGVMTDKEEE---EV 371
D+R++ AGPA S S FH D + +W+ + G K W++ PPG+ + D+ +V
Sbjct: 219 DYRFVYAGPAGSWSPFHADIFRSFSWSVNVCGRKKWLLFPPGQEE--ALRDRHGNLPYDV 276
Query: 372 TSPVGIAEWIISGYYNDAVKLAQEGRCQICVTFPGECIYVPSGWWHSVINLTDSVALTEN 431
TSP + + + +LA G GE ++VPSGW H V NL D++++ N
Sbjct: 277 TSPA-----LCDTHLHPRNQLA--GPPLEITQEAGEMVFVPSGWHHQVHNLDDTISINHN 329
Query: 432 FV 433
+V
Sbjct: 330 WV 331
>7298434 [BT] KOG2131 Uncharacterized conserved protein contains JmjC domain
Length = 425
Score = 67.0 bits (162), Expect = 7e-11
Identities = 46/176 (26%), Positives = 81/176 (45%), Gaps = 20/176 (11%)
Query: 274 LYLFDCNSTALKLMSKEYAPPSIYHNDFF--KLFQEKGIKCRPDHRWLIAGPARSGSTFH 331
LYL D + A Y P + +D+ +L Q+ + D+R++ GP S +++H
Sbjct: 157 LYLKDWHLAAQMPGYNFYKVPKYFASDWLNEQLIQQG----KDDYRFVYMGPKNSWTSYH 212
Query: 332 KDPNHTSAWNTGLSGMKLWVMLPPGENPPGVMTDKEEEEVTSPVGIAEWIISGYYNDAVK 391
D + +W+T + G+K W+++PPGE + P I E ++ +
Sbjct: 213 ADVFGSFSWSTNIVGLKKWLIMPPGEE-----LKLNDRLGNLPFSIDEKMLDEHNVRYYT 267
Query: 392 LAQEGRCQICVTFPGECIYVPSGWWHSVINLTDSVALTENFVPEPIVPKVMNFFKN 447
+ Q E ++VPSGW+H V NLTD++++ N+ + V KN
Sbjct: 268 INQRA---------NEAVFVPSGWFHQVWNLTDTISVNHNWFNGCNISMVWQNLKN 314
>SPAC25H1.02 [BT] KOG2131 Uncharacterized conserved protein contains JmjC domain
Length = 464
Score = 57.8 bits (138), Expect = 5e-08
Identities = 43/195 (22%), Positives = 92/195 (47%), Gaps = 15/195 (7%)
Query: 291 YAPPSIYHNDFFKLFQEKGIKCRPDH-RWLIAGPARSGSTFHKDPNHTSAWNTGLSGMKL 349
Y+ P I+ +D+ + I C D R+ G + + H D + +++ L G+K
Sbjct: 200 YSTPDIFADDWLNAYV---IDCESDDFRFAYLGSHLTTTGLHTDVYASHSFSVNLCGVKC 256
Query: 350 WVMLPPGENPPGVMTDKEEEEVTSPVGIAEWIISGYYNDAVKLAQEGRCQICVTFPGECI 409
W+ + P ++ + + +++++ S WI + +I +PG+ +
Sbjct: 257 WLFIDP-KDLQTIASLYDDQQLPS------WITKDDLFRGPLVNHRHLIKILFQYPGQTV 309
Query: 410 YVPSGWWHSVINLTDSVALTENFVPEPIVPKVMNFFKNKPAQISGFHLKDFVESVRVFLD 469
+VPSGW+H V+N+ ++++ N+ + ++ K + ++S LKD +E V
Sbjct: 310 FVPSGWYHQVLNIGTTLSINHNWCNASCILQMYTALKEQ-YEVSAESLKDLLEDGIV--- 365
Query: 470 TQERDDQSQNERLDA 484
T++R Q E ++A
Sbjct: 366 TKDRFSQVVTEVVEA 380
>Hs22055516 [B] KOG1633 F-box protein JEMMA and related proteins with JmjC PHD
F-box and LRR domains
Length = 1060
Score = 50.1 bits (118), Expect = 9e-06
Identities = 53/244 (21%), Positives = 98/244 (39%), Gaps = 29/244 (11%)
Query: 201 EFDVATFHEEFINKPFILQNKDGITSEGKPRWPRWTLDDLVERYPH--------EIFRQE 252
+ V E + P ++ KDG+ P +T+ D VE Y ++ RQ
Sbjct: 146 QLTVEFLEENSFSVPILVLKKDGLGMTLPS--PSFTVRD-VEHYVGSDKEIDVIDVTRQA 202
Query: 253 AVKWDLSLYSYYFRENRDESPLYLFDCNSTALKLMSKEYAPPSIYHNDFFK-LFQEKGIK 311
K L + Y+ + E L + + +L + P + + + L+ E+ +
Sbjct: 203 DCKMKLGDFVKYYYSGKREKVLNVISLEFSDTRLSNLVETPKIVRKLSWVENLWPEECVF 262
Query: 312 CRPD-HRWLIAGPARSGSTFHKDPNHTSAWNTGLSGMKLWVMLPPGENPPGVMTDKEEEE 370
RP+ ++ + S + FH D TS W L G K++ ++ P
Sbjct: 263 ERPNVQKYCLMSVRDSYTDFHIDFGGTSVWYHVLKGEKIFYLIRP--------------- 307
Query: 371 VTSPVGIAE-WIISGYYNDAVKLAQEGRCQICVTFPGECIYVPSGWWHSVINLTDSVALT 429
+ + + E W S N+ Q +C C G+ +++P+GW H+V+ D +A
Sbjct: 308 TNANLTLFECWSSSSNQNEMFFGDQVDKCYKCSVKQGQTLFIPTGWIHAVLTPVDCLAFG 367
Query: 430 ENFV 433
NF+
Sbjct: 368 GNFL 371
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.317 0.136 0.419
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,901,405
Number of Sequences: 60738
Number of extensions: 1792430
Number of successful extensions: 4086
Number of sequences better than 1.0e-05: 9
Number of HSP's better than 0.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 4062
Number of HSP's gapped (non-prelim): 10
length of query: 580
length of database: 30,389,216
effective HSP length: 112
effective length of query: 468
effective length of database: 23,586,560
effective search space: 11038510080
effective search space used: 11038510080
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)