ORF      STATUS       Function Best COG  Functional category                                          Pathways and functional systems
r_klactVI3373   suspect: LH   J     KOG4080  Translation, ribosomal structure and biogenesis                Mitochondrial ribosomal protein L32

BLASTP 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= r_klactVI3373 1183687 1183133 -185 
         (185 letters)

Database: KOG eukaryal database 04/03 
           60,738 sequences; 30,389,216 total letters

Searching..................................................done

Color Key for Alignment Scores:   


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

YCR003w [J] KOG4080 Mitochondrial ribosomal protein L32               183   1e-46

>YCR003w [J] KOG4080 Mitochondrial ribosomal protein L32
          Length = 183

 Score =  183 bits (465), Expect = 1e-46
 Identities = 93/174 (53%), Positives = 118/174 (67%), Gaps = 13/174 (7%)

Query: 9   SFSRVLLETATSILPRWSTPAAGTALP---QKLLELLERNQREK------SSPQADYFTN 59
           +F +++  TA      W  P    +L    QK L  + R  REK       +   D+F+N
Sbjct: 11  AFHKIVPTTAIG----WLVPLGNPSLQIPGQKQLGSIHRWLREKLQQDHKDTEDKDFFSN 66

Query: 60  NGILLAVPXXXXXXXXXXXXLYAPGDKQLKMINHLNKCPSCGHYKKAHTLCMHCVGEIRH 119
           NGILLAVP            LY PG KQLKMI+HLNKCPSCGHYK+A+TLCM+CVG+I H
Sbjct: 67  NGILLAVPKKKVSHQKKRQKLYGPGKKQLKMIHHLNKCPSCGHYKRANTLCMYCVGQISH 126

Query: 120 IWKAHTNVEQVEPIQEQELSELDKRILYPGRKETEYTKKLKDKDAYLERRMKTL 173
           IWK HT  E+++P QE+ELSELD+R+LYPGR++T+YTK LKDKD YLERR++TL
Sbjct: 127 IWKTHTAKEEIKPRQEEELSELDQRVLYPGRRDTKYTKDLKDKDNYLERRVRTL 180


  Database: KOG eukaryal database 04/03
    Posted date:  Apr 14, 2003  1:07 PM
  Number of letters in database: 30,389,216
  Number of sequences in database:  60,738
  
Lambda     K      H
   0.315    0.132    0.387 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,934,937
Number of Sequences: 60738
Number of extensions: 426331
Number of successful extensions: 1509
Number of sequences better than 1.0e-05: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1508
Number of HSP's gapped (non-prelim): 1
length of query: 185
length of database: 30,389,216
effective HSP length: 100
effective length of query: 85
effective length of database: 24,315,416
effective search space: 2066810360
effective search space used: 2066810360
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)